bioconductor: edgeR | Projects | Ecosyste.ms: Papers

10.3389/fonc.2021.564296

Identification and Validation of SNP-Containing Genes With Prognostic Value in Gastric Cancer via Integrated Bioinformatics Analysis
Cited by: 8
Author(s): Hui Li, Jing Guo, Guang Cheng, Yucheng Wei, Shihai Liu, Yaoyue Qi, Gongjun Wang, Ruoxi Xiao, Weiwei Qi, Wensheng Qiu
Software Mentions: 1
Published: over 5 years ago

10.3389/fonc.2020.586342

VWCE Functions as a Tumor Suppressor in Breast Cancer Cells
Cited by: 0
Author(s): Dan Zhang, Lei Wan, Fan Yang, Wenlan Liu, Litao Liu, Shengnan He, Ni Xie
Software Mentions: 1
Published: almost 6 years ago

10.3389/fonc.2021.654424

Clinical Value and Underlying Mechanisms of Upregulated LINC00485 in Hepatocellular Carcinoma
Cited by: 0
Author(s): Xinyu Zhu, Yan Feng, Dingdong He, Zi Wang, Fangfang Huang, Jiancheng Tu
Software Mentions: 1
Published: about 5 years ago

10.3389/fonc.2018.00398

Circular RNA Expression in Oral Squamous Cell Carcinoma
Cited by: 28
Author(s): Yufan Wang, Bowen Li, Shuai Sun, Xiang Li, Wen Su, Zhihong Wang, Feng Wang, Wei Zhang, Hongyu Yang
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41598-020-76171-6

Characterization of transcriptional response of Lactobacillus plantarum under acidic conditions provides insight into bacterial adaptation in fermentative environments
Cited by: 6
Author(s): Sera Jung, Jong Hee Lee
Software Mentions: 1
Published: almost 6 years ago

10.3390/ijms20194933

Transforming Growth Factor-β1 Selectively Recruits microRNAs to the RNA-Induced Silencing Complex and Degrades CFTR mRNA under Permissive Conditions in Human Bronchial Epithelial Cells
Cited by: 13
Author(s): Nilay Mitash, Fangping Mu, Joshua E Donovan, Michael M. Myerburg, Sarangarajan Ranganathan, Catherine M. Greene, Agnieszka Swiatecka‐Urban
Software Mentions: 1
Published: almost 7 years ago

10.3389/fonc.2020.00049

Upregulated Expression of TUBA1C Predicts Poor Prognosis and Promotes Oncogenesis in Pancreatic Ductal Adenocarcinoma via Regulating the Cell Cycle
Cited by: 23
Author(s): Mugahed Abdullah Hasan Albahde, Haining Zhang, Qiu-Qiang Zhang, Guoqi Li, Weilin Wang
Software Mentions: 1
Published: over 6 years ago

10.1186/s12934-020-01503-0

Effect of overexpression of SNF1 on the transcriptional and metabolic landscape of baker’s yeast under freezing stress
Cited by: 10
Author(s): Meng Kai Lü, Yang Xu, Xue Lin, Huan-Yuan Jiang, Xiaoping Hu, Sixin Liu
Software Mentions: 1
Published: over 5 years ago

10.3389/fonc.2020.01224

Glycogene Expression Profiling of Hepatic Cells by RNA-Seq Analysis for Glyco-Biomarker Identification
Cited by: 6
Author(s): Kiyohiko Angata, Hiromichi Sawaki, Shigeko Tsujikawa, Makoto Ocho, Akira Togayachi, Hisashi Narimatsu
Software Mentions: 1
Published: about 6 years ago

10.3389/fnins.2020.00181

Prdx1 Reduces Intracerebral Hemorrhage-Induced Brain Injury via Targeting Inflammation- and Apoptosis-Related mRNA Stability
Cited by: 14
Author(s): Guoqiang Yang, Jiacheng Huang, Junjie Yuan, Zhang Qin, Chang‐Xiong Gong, Qiong Chen, Qiang Xie, Lin Xie, Ru Chen, Zhongming Qiu, Kai Zhou, Rui Xu, Guohui Jiang, Xiao‐Yi Xiong, Qingwu Yang
Software Mentions: 1
Published: over 6 years ago

10.3389/fnins.2020.00848

Melatonin Enhances the Therapeutic Effect of Plasma Exosomes Against Cerebral Ischemia-Induced Pyroptosis Through the TLR4/NF-κB Pathway
Cited by: 56
Author(s): Kankai Wang, Junnan Ru, Hengli Zhang, Jiayu Chen, Xiao Yan Lin, Zhongxiao Lin, Ming‐Shien Wen, Lijie Huang, Haoqi Ni, Qichuan Zhuge, Shuxu Yang
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-020-74594-9

Involvement of neutrophils in machineries underlying the rupture of intracranial aneurysms in rats
Cited by: 19
Author(s): Mika Kushamae, Haruka Miyata, Makoto Shirai, Kampei Shimizu, Mieko Oka, Hirokazu Koseki, Yu Abekura, Isao Ono, Kazuhiko Nozaki, Tohru Mizutani, Tomohiro Aoki
Software Mentions: 1
Published: almost 6 years ago

10.3389/fnmol.2017.00027

Rpph1 Upregulates CDC42 Expression and Promotes Hippocampal Neuron Dendritic Spine Formation by Competing with miR-330-5p
Cited by: 48
Author(s): Yifei Cai, Zheng Sun, Hui‐Zhen Jia, Hongxue Luo, Xiaoyang Ye, Qi Wu, Yi Xiong, Wei Zhang, Jun Wan
Software Mentions: 1
Published: over 9 years ago

10.3389/fnmol.2018.00410

Transcriptome Profiling of Layer 5 Intratelencephalic Projection Neurons From the Mature Mouse Motor Cortex
Cited by: 7
Author(s): Alison J Clare, Robert C. Day, Ruth M. Empson, Stephanie M. Hughes
Software Mentions: 1
Published: almost 8 years ago

10.3390/ijms20205172

Novel Pituitary Actions of Epidermal Growth Factor: Receptor Specificity and Signal Transduction for UTS1, EGR1, and MMP13 Regulation by EGF
Cited by: 5
Author(s): Qiongyao Hu, Shaohua Xu, Ya Cheng, Jingyi Jia, Lingling Zhou, Guangfu Hu
Software Mentions: 1
Published: almost 7 years ago

10.3389/fmolb.2021.737472

Transcriptional Network Analysis Reveals the Role of miR-223-5p During Diabetic Corneal Epithelial Regeneration
Cited by: 4
Author(s): Yuan Zhang, Shengqian Dou, Xia Qi, Zhenzhen Zhang, Yujie Qiao, Yani Wang, Jin Xie, Hui Jiang, Bin Zhang, Qingjun Zhou, Qun Wang, Lixin Xie
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-020-77177-w

Transcriptome analyses reveals the dynamic nature of oil accumulation during seed development of Plukenetia volubilis L.
Cited by: 6
Author(s): Lu Guo, Zhihua Wu, Peng Yan, Xiuhua Shang, Yi Xie, R. J. Arnold
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-020-77598-7

Functional characterisation of the transcriptome from leaf tissue of the fluoroacetate-producing plant, Dichapetalum cymosum, in response to mechanical wounding
Cited by: 7
Author(s): Selisha A. Sooklal, Phelelani T. Mpangase, Mihai-Silviu Tomescu, Shaun Aron, Scott Hazelhurst, Robert H. Archer, Karl Rumbold
Software Mentions: 1
Published: over 5 years ago

10.3389/fmolb.2021.682769

Novel Insights into the Potential Diagnostic Value of Circulating Exosomal IncRNA-Related Networks in Large Artery Atherosclerotic Stroke
Cited by: 4
Author(s): Shuai Zhang, Jing Wang, Mei Jie Qu, Kun Wang, Jun Ai, Pan Xu, Xiao Jun Zhu
Software Mentions: 1
Published: about 5 years ago

10.3389/fmolb.2017.00057

Deep Sequencing Transcriptome Analysis of Murine Wound Healing: Effects of a Multicomponent, Multitarget Natural Product Therapy-Tr14
Cited by: 34
Author(s): Georges St. Laurent, Bernd Seilheimer, Michael Tackett, Jianhua Zhou, Dmitry Shtokalo, Yuri Vyatkin, Maxim Ri, Ian Toma, Dan Jones, Timothy A. McCaffrey
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-020-77293-7

Comparative transcriptome analysis implied a ZEP paralog was a key gene involved in carotenoid accumulation in yellow-fleshed sweetpotato
Cited by: 13
Author(s): Koichi Suematsu, Masaru Tanaka, Rie Kurata, Kai Yu
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms20205069

Renal Artery Stenosis Alters Gene Expression in Swine Scattered Tubular-Like Cells
Cited by: 7
Author(s): Arash Aghajani Nargesi, Xiang Yang Zhu, Yuanhang Liu, Hui Tang, Kyra L. Jordan, Lilach O. Lerman, Alfonso Eirin
Software Mentions: 1
Published: almost 7 years ago

10.3389/fmolb.2021.587436

Comprehensive Analysis of Ferroptosis Regulators in Lung Adenocarcinomas Identifies Prognostic and Immunotherapy-Related Biomarkers
Cited by: 11
Author(s): Sijin Sun, Guo Wei, Fang Lv, Guochao Zhang, Juhong Wang, Renda Li, Fengwei Tan, Ning Li, Xue Qin, Yibo Gao, Shugeng Gao, Jie He
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-020-78976-x

Early pregnancy maternal progesterone administration alters pituitary and testis function and steroid profile in male fetuses
Cited by: 13
Author(s): Katarzyna Siemienowicz, Yili Wang, Magda Marečková, Junko Nio‐Kobayashi, Paul A. Fowler, Michael T. Rae, W. Colin Duncan
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-020-78781-6

Identifying transcription factors that reduce wood recalcitrance and improve enzymatic degradation of xylem cell wall in Populus
Cited by: 6
Author(s): Chiaki Hori, Naoki Takata, Pui Ying Lam, Yuki Tobimatsu, Soichiro Nagano, Jenny C. Mortimer, Dan Cullen
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0200210

Transcription factor induced conversion of human fibroblasts towards the hair cell lineage
Cited by: 23
Author(s): Maria B Duran Alonso, Iris Lopez Hernandez, Miguel A. de la Fuente, Javier García‐Sancho, Fernando Giráldez, Thomas Schimmang
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0216294

Sensory receptor repertoire in cyprid antennules of the barnacle Balanus improvisus
Cited by: 8
Author(s): Anna Abramova, Magnus Alm Rosenblad, Anders Blomberg, Tomas Larsson
Software Mentions: 1
Published: over 7 years ago

10.3389/fmolb.2018.00079

Systematic Analysis of Gene Expression Profiles Controlled by hnRNP Q and hnRNP R, Two Closely Related Human RNA Binding Proteins Implicated in mRNA Processing Mechanisms
Cited by: 10
Author(s): Sara Cappelli, Maurizio Romano, Emanuele Buratti
Software Mentions: 1
Published: almost 8 years ago

10.3389/fgene.2019.00929

Transcriptome Analysis Reveals That Alfalfa Promotes Rumen Development Through Enhanced Metabolic Processes and Calcium Transduction in Hu Lambs
Cited by: 9
Author(s): Bin Yang, Hongwei Chen, Jiawen Cao, Bo He, Shanshan Wang, Yang Luo, Jiakun Wang
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-020-80837-6

Transcriptome and phytochemical analyses provide insights into the organic sulfur pathway in Allium hirtifolium
Cited by: 6
Author(s): Aboozar Soorni, Amir Mohammad Akrami, Reza Abolghasemi, Maryam Vahedi
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-020-80280-7

Comparative transcriptome analysis reveals resistant and susceptible genes in tobacco cultivars in response to infection by Phytophthora nicotianae
Cited by: 15
Author(s): He Meng, Mingming Sun, Zipeng Jiang, Yutong Liu, Yu Sun, Dan Liŭ, Caihong Jiang, Min Ren, Guangdi Yuan, Wenlong Yu, Qi Sheng Feng, Aiguo Yang, Lei Cheng, Yuanying Wang
Software Mentions: 1
Published: over 5 years ago

10.3389/fgene.2020.00494

Quantitative Estimation of Oxidative Stress in Cancer Tissue Cells Through Gene Expression Data Analyses
Cited by: 6
Author(s): Liyang Liu, Haining Cui, Ying Xu
Software Mentions: 1
Published: about 6 years ago

10.3390/ijms20235893

An Integrated Analysis of the Rice Transcriptome and Metabolome Reveals Root Growth Regulation Mechanisms in Response to Nitrogen Availability
Cited by: 39
Author(s): Xin Wei, Lina Zhang, Wenzhong Zhang, Jiping Gao, Jun Yi, Xiaoxi Zhen, Min Du, Yanze Zhao, Liqiang Chen
Software Mentions: 1
Published: over 6 years ago

10.3389/fgene.2020.00534

Novel Insights Into Triple-Negative Breast Cancer Prognosis by Comprehensive Characterization of Aberrant Alternative Splicing
Cited by: 8
Author(s): Shasha Gong, Zhijian Song, David Ethan Spezia-Lindner, Feilong Meng, Tingting Ruan, Guangzhi Ying, Changhong Lai, Qianqian Wu, Yong Liang
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0178189

Systematic genomic and translational efficiency studies of uveal melanoma
Cited by: 27
Author(s): Chelsea Place Johnson, Ivana K. Kim, Bita Esmaeli, Ali Amin‐Mansour, Daniel J. Treacy, Scott L. Carter, Eran Hodis, Nikhil Wagle, Sara Seepo, Xiaoxing Yu, Anne Marie Lane, Evangelos S. Gragoudas, Francisca Vázquez, Elizabeth Nickerson, Kristian Cibulskis, Aaron McKenna, Stacey Gabriel, Gad Getz, Eliezer M. Van Allen, Peter A.C. ’t Hoen, Levi A. Garraway, Scott E. Woodman
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-021-81164-0

Androgen receptor and its splice variant, AR-V7, differentially induce mRNA splicing in prostate cancer cells
Cited by: 9
Author(s): Manjul Rana, Jianrong Dong, Matthew J. Robertson, Cristian Coarfa, Nancy L. Weigel
Software Mentions: 1
Published: over 5 years ago

10.3389/fgene.2020.00881

SlGID1a Is a Putative Candidate Gene for qtph1.1, a Major-Effect Quantitative Trait Locus Controlling Tomato Plant Height
Cited by: 4
Author(s): Xiaolin Liu, Wencai Yang, Jing Wang, Ming Yang, Kai Wei, Xiaoyan Liu, Zhengkun Qiu, Tong van Giang, Xiaoxuan Wang, Yanmei Guo, Junming Li, Lei Liu, Jinshuai Shu, Yan Du, Zejun Huang
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-020-80680-9

GATA3 somatic mutations are associated with clinicopathological features and expression profile in TCGA breast cancer patients
Cited by: 14
Author(s): Fahimeh Afzaljavan, Ayeh Sadat Sadr, Sevtap Savas, Alireza Pasdar
Software Mentions: 1
Published: over 5 years ago

10.1007/s00408-019-00257-w

Growth Hormone-Releasing Hormone Receptor Antagonist Modulates Lung Inflammation and Fibrosis due to Bleomycin
Cited by: 29
Author(s): Chongxu Zhang, Renzhi Cai, Aaron Lazerson, Gaëtan J.-R. Delcroix, Medhi Wangpaichitr, Mehdi Mirsaeidi, Anthony J. Griswold, Andrew V. Schally, Robert M. Jackson
Software Mentions: 1
Published: about 7 years ago

10.3389/fendo.2021.687586

Metabolic Syndrome Is Associated With Altered mRNA and miRNA Content in Human Circulating Extracellular Vesicles
Cited by: 3
Author(s): Yongxin Li, Yijun Meng, Xiangyang Zhu, André J. van Wijnen, Alfonso Eirin, Lilach O. Lerman
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pntd.0002402

Sex-Biased Expression of MicroRNAs in Schistosoma mansoni
Cited by: 59
Author(s): A. De Marco, Ana Kozomara, Jerome H. L. Hui, Aidan M. Emery, David Rollinson, Sam Griffiths-Jones, Matthew Ronshaugen
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pntd.0003975

Global Gene Expression Profiling through the Complete Life Cycle of Trypanosoma vivax
Cited by: 31
Author(s): Andrew P. Jackson, Sophie Goyard, Dong Xia, Bernardo J. Foth, Mandy Sanders, Jonathan M. Wastling, Paola Minóprio, Matthew Berriman
Software Mentions: 1
Published: about 11 years ago

10.3389/fendo.2016.00165

Muscle Contraction Induces Acute Hydroxymethylation of the Exercise-Responsive Gene Nr4a3
Cited by: 28
Author(s): Pattarawan Pattamaprapanont, Christian Garde, Odile Fabre, Romain Barrès
Software Mentions: 1
Published: over 9 years ago

10.3389/fendo.2018.00574

Leptin Selectively Regulates Nutrients Metabolism in Nile Tilapia Fed on High Carbohydrate or High Fat Diet
Cited by: 33
Author(s): Caizhi Liu, Anbang He, Lei Ning, Yuan Luo, Dongliang Li, Meiling Zhang, Liqiao Chen, Zhen‐Yu Du
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41598-021-81856-7

Freshwater mussels (Unionidae) brought into captivity exhibit up-regulation of genes involved in stress and energy metabolism
Cited by: 10
Author(s): Ieva Roznere, Brandon T. Sinn, Marymegan Daly, G. Thomas Watters
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-82284-3

Notch signaling-modified mesenchymal stem cells improve tissue perfusion by induction of arteriogenesis in a rat hindlimb ischemia model
Cited by: 7
Author(s): Shigeru Miyagawa, Shigeru Miyagawa, Takuji Kawamura, Takashi Shibuya, Kenichi Watanabe, Tomoya Nakagawa, Akira Harada, Dai Chida, Yoshiki Sawa
Software Mentions: 1
Published: over 5 years ago

10.3389/fendo.2019.00553

Identification of a New Theca/Interstitial Cell-Specific Gene and Its Biological Role in Growth of Mouse Ovarian Follicles at the Gonadotropin-Independent Stage
Cited by: 6
Author(s): Masato Aoyama, Akira Shiraishi, Shin Matsubara, Kazuyuki Horie, Tomohiro Osugi, Toru Kawada, Keiko Yasuda, Honoo Satake
Software Mentions: 1
Published: about 7 years ago

10.3389/fendo.2021.650625

Estrogen Receptor Beta Influences the Inflammatory p65 Cistrome in Colon Cancer Cells
Cited by: 1
Author(s): Rajitha Indukuri, Linnea Hases, Amena Archer, Cecilia Williams
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-82509-5

Long non-coding RNAs as novel therapeutic targets in juvenile myelomonocytic leukemia
Cited by: 7
Author(s): Mattias Hofmans, Tim Lammens, Barbara Depreter, Ying Wu, Miriam Erlacher, Aurélie Cayé, Hélène Cavé, Christian Flotho, Valérie de Haas, Charlotte M. Niemeyer, Jan Starý, Filip Van Nieuwerburgh, Dieter Deforce, Wouter Van Loocke, Pieter Van Vlierberghe, Jan Philippé, Barbara De Moerloose
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-83074-7

Small RNAs and their targets are associated with the transgenerational effects of water-deficit stress in durum wheat
Cited by: 13
Author(s): Haipei Liu, Amanda J. Able, Jason A. Able
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms21010159

Transcriptome Response to Drought, Rehydration and Re-Dehydration in Potato
Cited by: 47
Author(s): Yongkun Chen, Canhui Li, Jing Yi, Yang Yu, Chunxia Lei, Ming Gong
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-021-82848-3

A transcriptomic view to wounding response in young Scots pine stems
Cited by: 9
Author(s): Kean‐Jin Lim, Tanja Paasela, Anni Harju, Martti Venäläinen, Lars Paulín, Petri Auvinen, Katri Kärkkäinen, Teemu H. Teeri
Software Mentions: 1
Published: over 5 years ago

10.3389/fendo.2021.743155

Identification of mRNA Prognostic Markers for TGCT by Integration of Co-Expression and CeRNA Network
Cited by: 3
Author(s): Fang Zhu, Zhizhong Liu, Qianyin Zhou, Jingyu Fan, Dai Zhou, Xing Liu, Hao Bo, Le Tang, Liqing Fan
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pntd.0009377

Combined gene deletion of dihydrofolate reductase-thymidylate synthase and pteridine reductase in Leishmania infantum
Cited by: 5
Author(s): Arijit Bhattacharya, Philippe Leprohon, Marc Ouellette
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-83835-4

Lysosome repositioning as an autophagy escape mechanism by Mycobacterium tuberculosis Beijing strain
Cited by: 12
Author(s): Thanida Laopanupong, Pinidphon Prombutara, Phongthon Kanjanasirirat, Salisa Benjaskulluecha, Atsadang Boonmee, Tanapat Palaga, Stéphane Méresse, Jiraporn Paha, Tegar Adriansyah Putra Siregar, Tanawadee Khumpanied, Suparerk Borwornpinyo, Angkana Chaiprasert, Pongsak Utaisincharoen, Marisa Ponpuak
Software Mentions: 1
Published: over 5 years ago

10.3389/fncel.2020.566148

Pioglitazone Ameliorates Gentamicin Ototoxicity by Affecting the TLR and STAT Pathways in the Early Postnatal Organ of Corti
Cited by: 3
Author(s): Marijana Sekulic-Jablanovic, Matthew B. Wright, Vesna Petkovic, Daniel Bodmer
Software Mentions: 1
Published: almost 6 years ago

10.3389/fcimb.2018.00231

The Stringent Response-Regulated sRNA Transcriptome of Borrelia burgdorferi
Cited by: 20
Author(s): Dan Drecktrah, Laura S. Hall, Philipp Rescheneder, Meghan Lybecker, D. Scott Samuels
Software Mentions: 1
Published: about 8 years ago

10.1038/s41598-021-84355-x

The role of gut microbiota and amino metabolism in the effects of improvement of islet β-cell function after modified jejunoileal bypass
Cited by: 9
Author(s): Cai Tan, Zhihua Zheng, Xiaogang Wan, Jiaqing Cao, Ran Wei, Jinyuan Duan
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms21010118

Comparative Proteomic Analysis Reveals the Regulatory Effects of H2S on Salt Tolerance of Mangrove Plant Kandelia obovata
Cited by: 36
Author(s): Yiling Liu, Zhijun Shen, Martín Simón, Huan Li, Dongna Ma, Xike Zhu
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-021-84402-7

Absence of X-chromosome dosage compensation in the primordial germ cells of Drosophila embryos
Cited by: 3
Author(s): Ryoma Ota, Makoto Hayashi, Shumpei Morita, Hideharu Miura, Satoru Kobayashi
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-84519-9

Comparative transcriptome profiles of large and small bodied large-scale loaches cultivated in paddy fields
Cited by: 3
Author(s): Liulan Zhao, Kuo He, Qing Xiao, Qiao Li, Wei Luo, Jie Luo, Hongmei Fu, Jiayao Li, Xugan Wu, Jun Du, Quan Gong, Xun Wang
Software Mentions: 1
Published: over 5 years ago

10.3389/fcimb.2020.00066

Isoforms of Cathepsin B1 in Neurotropic Schistosomula of Trichobilharzia regenti Differ in Substrate Preferences and a Highly Expressed Catalytically Inactive Paralog Binds Cystatin
Cited by: 3
Author(s): Hana Dvořáková, Roman Leontovyč, Tomáš Macháček, Anthony J. O’Donoghue, Ondřej Šedo, Zbyněk Zdráhal, Charles S. Craik, Conor R. Caffrey, Petr Horák, Libor Mikeš
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pntd.0006186

Multifaceted functional implications of an endogenously expressed tRNA fragment in the vector mosquito Aedes aegypti
Cited by: 10
Author(s): Matthew W. Eng, Anthony Clemons, Casey Hill, Roberta Engel, David W. Severson, Susanta K. Behura
Software Mentions: 1
Published: over 8 years ago

10.3389/fcimb.2017.00004

Repurposing Approach Identifies Auranofin with Broad Spectrum Antifungal Activity That Targets Mia40-Erv1 Pathway
Cited by: 64
Author(s): Shankar Thangamani, Matthew C. Maland, Haroon Mohammad, Pete E. Pascuzzi, Larisa Avramova, Carla M. Koehler, Tony R. Hazbun, Mohamed N. Seleem
Software Mentions: 1
Published: over 9 years ago

10.1155/2021/8846951

Construction of Potential Gene Expression and Regulation Networks in Prostate Cancer Using Bioinformatics Tools
Cited by: 4
Author(s): Heyu Liu, Lirong Li, Fan Yu, Yaping Lü, Changhong Zhu, Wei Xia
Software Mentions: 1
Published: almost 5 years ago

10.3389/fcimb.2020.00097

RNA-Seq Revealed a Circular RNA-microRNA-mRNA Regulatory Network in Hantaan Virus Infection
Cited by: 64
Author(s): Shuang Lu, Ni Zhu, Weiwei Guo, Xin Wang, Kaiji Li, Jie Yan, Cuiping Jiang, Han Shi-yu, Hanmin Xiang, Xiaohan Wu, Yuanyuan Liu, Hairong Xiong, Liangjun Chen, Zuojiong Gong, Fan Luo, Wei Hou
Software Mentions: 1
Published: over 6 years ago

10.1038/s41396-020-00797-7

Mating type specific transcriptomic response to sex inducing pheromone in the pennate diatom Seminavis robusta
Cited by: 14
Author(s): Gust Bilcke, Koen Van Den Berge, Sam De Decker, Eli Bonneure, Nicole Poulsen, Petra Bulánková, Cristina Maria Osuna-Cruz, Jack Dickenson, Koen Sabbe, Georg Pohnert, Klaas Vandepoele, Sven Mangelinckx, Lieven De Veylder, Wim Vyverman
Software Mentions: 1
Published: almost 6 years ago

10.3389/fcimb.2020.575630

Comparative Transcriptomics of Shiga Toxin-Producing and Commensal Escherichia coli and Cytokine Responses in Colonic Epithelial Cell Culture Infections
Cited by: 2
Author(s): Lisa M. Harrison, David W. Lacher, Mark K. Mammel, Susan R. Leonard
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41396-019-0393-0

Two Chloroflexi classes independently evolved the ability to persist on atmospheric hydrogen and carbon monoxide
Cited by: 101
Author(s): Zahra F. Islam, Paul R. F. Cordero, Joanna Feng, Ya-Jou Chen, Sean K. Bay, Thanavit Jirapanjawat, Roslyn M. Gleadow, Carlo R. Carere, Matthew B. Stott, Eleonora Chiri, Chris Greening
Software Mentions: 1
Published: over 7 years ago

10.3389/fcimb.2021.662563

Transcriptome Signatures Predict Phenotypic Variations of Candida auris
Cited by: 11
Author(s): Sabrina Jenull, Michael Tscherner, Nataliia D. Kashko, Raju Shivarathri, Anton Stoiber, Manju Chauhan, Andriy Petryshyn, Neeraj Chauhan, Karl Kuchler
Software Mentions: 1
Published: over 5 years ago

10.1038/s41396-017-0034-4

Benefit from decline: the primary transcriptome of Alteromonas macleodii str. Te101 during Trichodesmium demise
Cited by: 27
Author(s): Songjun Hou, Mario López‐Pérez, Ulrike Pfreundt, Natalia Belkin, Kurt Stüber, Bruno Huettel, Richard Reinhardt, Ilana Berman‐Frank, Francisco Rodrı́guez-Valera, Wolfgang R. Hess
Software Mentions: 1
Published: over 8 years ago

10.3390/ijms21030817

Role of Phagocytosis in the Pro-Inflammatory Response in LDL-Induced Foam Cell Formation; a Transcriptome Analysis
Cited by: 16
Author(s): Alexander N. Orekhov, Nikita G. Nikiforov, Vasily N. Sukhorukov, M. Kubekina, Igor A. Sobenin, Wei-Kai Wu, Kathy Foxx, Sergey S. Pintus, Philip Stegmaier, Daria Stelmashenko, Alexander Kel, Alexei Gratchev, Alexandra А. Melnichenko, Reinhard Wetzker, Volha I Summerhill, Ichiro Manabe, Yumiko Oishi
Software Mentions: 1
Published: over 6 years ago

10.1038/s41396-017-0005-9

Deciphering the nature of the coral–Chromera association
Cited by: 31
Author(s): Amin R. Mohamed, Vivian R. Cumbo, Saki Harii, Chuya Shinzato, Cheong Xin Chan, Mark A. Ragan, Nori Satoh, Eldon E. Ball, David J. Miller
Software Mentions: 1
Published: over 8 years ago

10.1038/ismej.2017.18

Chance and necessity in the genome evolution of endosymbiotic bacteria of insects
Cited by: 27
Author(s): Beatriz Sabater-Muñoz, Christina Toft, David Alvarez‐Ponce, Mario A. Fares
Software Mentions: 1
Published: over 9 years ago

10.3389/fcimb.2017.00045

Colistin Resistance in Acinetobacter baumannii MDR-ZJ06 Revealed by a Multiomics Approach
Cited by: 30
Author(s): Xiaoting Hua, Lilin Liu, Youhong Fang, Qiucheng Shi, Xi Li, Qiong Chen, Kezhang Shi, Yan Jiang, Hua Zhou, Yunsong Yu
Software Mentions: 1
Published: over 9 years ago

10.3390/ijms21030745

Divergent Regulation of Myotube Formation and Gene Expression by E2 and EPA during In-Vitro Differentiation of C2C12 Myoblasts
Cited by: 8
Author(s): Orly Lacham‐Kaplan, Donny M. Camera, John A. Hawley
Software Mentions: 1
Published: over 6 years ago

10.1038/s41396-020-0718-z

Iron is not everything: unexpected complex metabolic responses between iron-cycling microorganisms
Cited by: 12
Author(s): Rebecca E. Cooper, Carl‐Eric Wegner, Stefan Kügler, Remington X. Poulin, Nico Ueberschaar, Jens D. Wurlitzer, Daniel Stettin, Thomas Wichard, Georg Pohnert, Kirsten Küsel
Software Mentions: 1
Published: about 6 years ago

10.3389/fcell.2020.579708

Transcriptome Analysis Reveals the Potential Role of Long Non-coding RNAs in Mammary Gland of Yak During Lactation and Dry Period
Cited by: 6
Author(s): Xiaoyun Wu, Xiaofang Zhou, Lin Xiong, Jie Pei, Xixi Yao, Chunnian Liang, Pengjia Bao, Min Chen, Xian Guo, Ping Yan
Software Mentions: 1
Published: over 5 years ago

10.3389/fcell.2021.593677

The Cancer-Testis Long Non-coding RNA PCAT6 Facilitates the Malignant Phenotype of Ovarian Cancer by Sponging miR-143-3p
Cited by: 6
Author(s): Xiaofang Tan, Yang Shao, Yue Teng, Siyu Liu, Weijian Li, Lu Xue, Yuepeng Cao, Chongqi Sun, Jinhong Zhang, Jing Han, Xiaoli Wu, Hanzi Xu, Kaipeng Xie
Software Mentions: 1
Published: over 5 years ago

10.3389/fcell.2021.727353

Multiomics Analysis of Neuroblastoma Cells Reveals a Diversity of Malignant Transformations
Cited by: 2
Author(s): Milda Narmontė, Povilas Gibas, Kristina Daniūnaitė, Juozas Gordevičius, Edita Kriukienė
Software Mentions: 1
Published: almost 5 years ago

10.7150/ijbs.55559

Generation of VEGF knock-in Cashmere goat via the CRISPR/Cas9 system
Cited by: 12
Author(s): Xiao Hu, Hao Fei, Xiaocong Li, Zhiyuan Xun, Yuan Gao, Bo Ren, Ming Cang, Hao Liang, Dongjun Liu
Software Mentions: 1
Published: over 5 years ago

10.7150/ijbs.63430

CCNB2/SASP/Cathepsin B & PGE2 Axis Induce Cell Senescence Mediated Malignant Transformation
Cited by: 5
Author(s): Ying Wang, Hanbing Zhang, Minglei Wang, Jing He, Hui Guo, Lihua Li, Jie Wang
Software Mentions: 1
Published: over 5 years ago

10.7150/ijbs.57871

Characteristics of the PI3K/AKT and MAPK/ERK pathways involved in the maintenance of self-renewal in lung cancer stem-like cells
Cited by: 14
Author(s): Jingyuan Li, Yunlong Wang, Dan Xie, Pei Qin, Xue Wan, H. Rosie Xing, Ting Ye
Software Mentions: 1
Published: over 5 years ago

10.7150/ijbs.59581

The effect of mitochondrial transplantation therapy from different gender on inhibiting cell proliferation of malignant melanoma
Cited by: 8
Author(s): Zhenyao Yu, Yixue Hou, Wei Zhou, Zizhen Zhao, Zesheng Liu, Ailing Fu
Software Mentions: 1
Published: over 5 years ago

10.7150/ijbs.62471

Rutin attenuates Sorafenib-induced Chemoresistance and Autophagy in Hepatocellular Carcinoma by regulating BANCR/miRNA-590-5P/OLR1 Axis
Cited by: 28
Author(s): Meng Zhou, Gan Zhang, Jun Hu, Yanzhi Zhu, Haoming Lan, Xianfeng Shen, Yi Lv, Lei Huang
Software Mentions: 1
Published: over 5 years ago

10.7150/ijbs.36412

Circular RNA profiling identified an abundant circular RNA circTMTC1 that inhibits chicken skeletal muscle satellite cell differentiation by sponging miR-128-3p
Cited by: 56
Author(s): Xiaoxu Shen, Zihao Liu, Xinao Cao, Haorong He, Shunshun Han, Yuqi Chen, Can Cui, Jing Zhao, Diyan Li, Yan Wang, Qing Zhu, Huadong Yin
Software Mentions: 1
Published: over 7 years ago

10.7150/ijbs.58916

Circular RNA circBCBM1 promotes breast cancer brain metastasis by modulating miR-125a/BRD4 axis
Cited by: 27
Author(s): Bo Fu, Wei Liu, Congshan Zhu, Peng Li, Li Wang, Pan Li, Ké Li, Peiying Cai, Min Meng, Yiting Wang, Anqi Zhang, Wenqiang Tang, Meng An
Software Mentions: 1
Published: over 5 years ago

10.3389/fcell.2021.704341

NAT10-Mediated N4-Acetylcytidine of RNA Contributes to Post-transcriptional Regulation of Mouse Oocyte Maturation in vitro
Cited by: 11
Author(s): Yuting Xiang, Chuanchuan Zhou, Yanyan Zeng, Qi Guo, Jiana Huang, Taibao Wu, Jiawen Liu, Qiqi Liang, Haitao Zeng, Xiaoyan Liang
Software Mentions: 1
Published: about 5 years ago

10.1186/s13046-018-0833-0

Overexpression of the Kininogen-1 inhibits proliferation and induces apoptosis of glioma cells
Cited by: 41
Author(s): Jinfang Xu, Jun Fang, Zhonghao Cheng, Longlong Fan, Weiwei Hu, Feng Zhou, Hong Shen
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pntd.0004634

Analysis on Gene Expression Profile in Oncospheres and Early Stage Metacestodes from Echinococcus multilocularis
Cited by: 28
Author(s): Fuqiang Huang, Zhisheng Dang, Yutaka Suzuki, T Horiuchi, Kinpei Yagi, Hirokazu Kouguchi, Takao Irie, Kyeong-Soon Kim, Yuzaburo Oku
Software Mentions: 1
Published: over 10 years ago

10.3389/fcell.2019.00337

mTORC1-Rps15 Axis Contributes to the Mechanisms Underlying Global Translation Reduction During Senescence of Mouse Embryonic Fibroblasts
Cited by: 4
Author(s): Su Wu, Siyao Xu, Ruofei Li, Kecheng Li, Xiaoqin Zhong, Yingying Li, Zhifen Zhou, Yi Liu, Ran Feng, Jianfei Zheng, Zhou Songyang, Feng Liu
Software Mentions: 1
Published: over 6 years ago

10.3389/fcell.2021.713503

Establishment of Mouse Primed Stem Cells by Combination of Activin and LIF Signaling
Cited by: 2
Author(s): Mengyi Wei, Yanglin Chen, Chaoyue Zhao, Zheng Li, Baojiang Wu, Chen Chen, Xihe Li, Siqin Bao
Software Mentions: 1
Published: about 5 years ago

10.1186/s13046-019-1315-8

Long non-coding RNA LUCAT1/miR-5582-3p/TCF7L2 axis regulates breast cancer stemness via Wnt/β-catenin pathway
Cited by: 93
Author(s): Aiping Zheng, Xinyue Song, Lin Zhang, Lin Zhao, Xiaoyun Mao, Minjie Wei, Feng Jin
Software Mentions: 1
Published: about 7 years ago

10.3389/fcell.2020.00527

Transcriptome Characterization of Repressed Embryonic Myogenesis Due to Maternal Calorie Restriction
Cited by: 2
Author(s): Jun He, Ying He, Bing Yu, Xuelian Wang, Shuai Chen
Software Mentions: 1
Published: about 6 years ago

10.1093/molbev/msab123

Conserved and unique transcriptional features of pharyngeal arches in the skate (<i>Leucoraja erinacea</i>) and evolution of the jaw
Cited by: 16
Author(s): Christine Hirschberger, Victoria A. Sleight, Katharine E. Criswell, Stephen J. Clark, J. Andrew Gillis
Software Mentions: 1
Published: over 5 years ago

10.3389/fcell.2021.631413

Role of VEGFR2 in Mediating Endoplasmic Reticulum Stress Under Glucose Deprivation and Determining Cell Death, Oxidative Stress, and Inflammatory Factor Expression
Cited by: 2
Author(s): Bohan Xu, Leocadia Zhou, Qishan Chen, Jianing Zhang, Lijuan Huang, Shasha Wang, Zhimin Ye, Xianyue Ren, Yu Cai, Lasse D. Jensen, Weirong Chen, Xuri Li, Rong Ju
Software Mentions: 1
Published: about 5 years ago

10.3389/fcell.2021.641618

Implementation of CRISPR/Cas9 Genome Editing to Generate Murine Lung Cancer Models That Depict the Mutational Landscape of Human Disease
Cited by: 18
Author(s): Oliver Hartmann, Michaela Reissland, Carina R. Maier, Thomas Fischer, Cristian Prieto-Garcia, Apoorva Baluapuri, Jessica Denise Schwarz, W. Schmitz, Martín Garrido‐Rodriguez, Nikolett Pahor, Clare C. Davies, Florian Bassermann, Amir Orian, Elmar Wolf, Almut Schulze, Marco A. Calzado, Mathias T. Rosenfeldt, Markus E. Diefenbacher
Software Mentions: 1
Published: over 5 years ago

10.1186/s13046-020-01763-z

Therapeutic evaluation of palbociclib and its compatibility with other chemotherapies for primary and recurrent nasopharyngeal carcinoma
Cited by: 11
Author(s): Zhichao Xue, Vivian Wai Yan Lui, Yongshu Li, Lin Jia, Chanping You, Xin Li, Wenying Piao, Hui Yuan, Pek Lan Khong, Kwok Wai Lo, Lydia W.T. Cheung, Victor Ho Fan Lee, Anne W.M. Lee, Sai Wah Tsao, Chi Man Tsang
Software Mentions: 1
Published: over 5 years ago

10.3390/nu10111721

The Effect of Dietary Mushroom Agaricus bisporus on Intestinal Microbiota Composition and Host Immunological Function
Cited by: 25
Author(s): Gloria Solano‐Aguilar, Saebyeol Jang, Sukla Lakshman, Richi Gupta, Ethiopia Beshah, Masoumeh Sikaroodi, Bryan T. Vinyard, Aleksey Molokin, Patrick M. Gillevet, Joseph F. Urban
Software Mentions: 1
Published: almost 8 years ago

10.3390/ijms21041360

Molecular Evidences for the Interactions of Auxin, Gibberellin, and Cytokinin in Bent Peduncle Phenomenon in Rose (Rosa sp.)
Cited by: 3
Author(s): Weikun Jing, Shuai Zhang, Youwei Fan, Yinglong Deng, Chengpeng Wang, Jiao Lü, Xiaoming Sun, Nan Ma, Muhammad Furqan Shahid, Yonghong Li, Xiaofeng Zhou
Software Mentions: 1
Published: over 6 years ago

Projects: bioconductor: edgeR

Science Score: 100/100

Bonuses:

Papers Mentioning edgeR 6,568