bioconductor: edgeR | Projects | Ecosyste.ms: Papers

10.3389/fimmu.2020.594243

Effects of In Vivo Gluten Challenge on PBMC Gene Expression Profiles in Diet Treated Celiac Disease
Cited by: 4
Author(s): Dawit A. Yohannes, Andrea de Kauwe, Katri Kaukinen, Kalle Kurppa, Markku Mäki, Robert P. Anderson, Sten Linnarsson, Dario Greco, Päivi Saavalainen
Software Mentions: 1
Published: almost 4 years ago

10.3390/v13071325

Virus-Targeted Transcriptomic Analyses Implicate Ranaviral Interaction with Host Interferon Response in Frog Virus 3-Infected Frog Tissues
Cited by: 1
Author(s): Yun Tian, Francisco De Jesús Andino, Collins N. Khwatenge, Jiuyi Li, Jacques Robert, Yongming Sang
Software Mentions: 1
Published: over 3 years ago

10.3389/fimmu.2019.02394

IFN-Lambda 3 Mediates Antiviral Protection Against Porcine Epidemic Diarrhea Virus by Inducing a Distinct Antiviral Transcript Profile in Porcine Intestinal Epithelia
Cited by: 35
Author(s): Liang Li, Mei Xue, Fang Fu, Liang Yin, Li Feng, Pinghuang Liu
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-020-69434-9

Comparative transcriptome analysis of Sclerotinia sclerotiorum revealed its response mechanisms to the biological control agent, Bacillus amyloliquefaciens
Cited by: 18
Author(s): Xiaoxiang Yang, Lei Zhang, Yunjia Xiang, Lei Du, Xiaoqin Huang, Yong Liu
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-67760-6

A cluster of metabolism-related genes predict prognosis and progression of clear cell renal cell carcinoma
Cited by: 21
Author(s): Mei Liu, Qiufeng Pan, Ruihai Xiao, Yi Yu, Wenbao Lu, Longwang Wang
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-68637-4

Cellular, mitochondrial and molecular alterations associate with early left ventricular diastolic dysfunction in a porcine model of diabetic metabolic derangement
Cited by: 14
Author(s): Ilkka Heinonen, Oana Sorop, Bas M. van Dalen, Rob C I Wüst, Jens van de Wouw, Vincent J. de Beer, Yanti Octavia, Richard van Duin, Youri Hoogstrate, Lau Blonden, Milla Alkio, Katja Anttila, Andrew Stubbs, Jolanda van der Velden, Daphne Merkus, Dirk J. Duncker
Software Mentions: 1
Published: over 4 years ago

10.1155/2021/8875971

High FAM189B Expression and Its Prognostic Value in Patients with Gastric Cancer
Cited by: 3
Author(s): Changliang Wu, Quan-Xiao Tan, Dan Liŭ, Jun-E Jiang, Ting Lu, Zu-Mei Huang, Yingjie Su
Software Mentions: 1
Published: over 3 years ago

10.3389/fimmu.2018.01372

CD19+CD24hiCD38hi B Cells Are Expanded in Juvenile Dermatomyositis and Exhibit a Pro-Inflammatory Phenotype After Activation Through Toll-Like Receptor 7 and Interferon-α
Cited by: 60
Author(s): Christopher Piper, Meredyth G Ll Wilkinson, Claire T. Deakin, G. Otto, S Dowle, Chantal L. Duurland, Stuart Adams, Emiliano Marasco, Elizabeth C. Rosser, Anna Radziszewska, Rita Carsetti, Yiannis Ioannou, Philip L. Beales, Daniel Kelberman, David Isenberg, Claudia Mauri, Kiran Nistala, Lucy R. Wedderburn
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-020-70484-2

Construct a circRNA/miRNA/mRNA regulatory network to explore potential pathogenesis and therapy options of clear cell renal cell carcinoma
Cited by: 50
Author(s): Shengjie Bai, Yinying Wu, Yanli Yan, Shuai Shao, Jiangzhou Zhang, Jiaxin Liu, Baojun Hui, Rui Li, Hailin Ma, Xiaozhi Zhang, Juan Ren
Software Mentions: 1
Published: over 4 years ago

10.1038/s41416-018-0321-5

Exploring the transcriptome of hormone-naive multifocal prostate cancer and matched lymph node metastases
Cited by: 7
Author(s): Linnéa Schmidt, Mia Møller, Christa Haldrup, Siri H. Strand, Søren Vang, Jakob Hedegaard, Søren Høyer, Michael Borre, Torben F. Ørntoft, Karina D. Sørensen
Software Mentions: 1
Published: about 6 years ago

10.1038/s41416-018-0263-y

Targeting peroxiredoxin 1 impairs growth of breast cancer cells and potently sensitises these cells to prooxidant agents
Cited by: 45
Author(s): Małgorzata Bajor, Agata O Zych, Agnieszka Graczyk-Jarzynka, Angelika Muchowicz, Małgorzata Firczuk, Lech Trzeciak, Paweł Gaj, Antoni Domagała, Marta Siernicka, Agnieszka Zagożdżon, Paweł Siedlecki, Monika Kniotek, Patrick C. O’Leary, Jakub Goła̧b, Radosław Zagożdżon
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-020-70932-z

Elucidation of resistance signaling and identification of powdery mildew resistant mapping loci (ClaPMR2) during watermelon-Podosphaera xanthii interaction using RNA-Seq and whole-genome resequencing approach
Cited by: 6
Author(s): Mihir Mandal, Haktan Suren, Chandrasekar S. Kousik
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-71050-6

RNA-Seq analysis of differentially expressed genes of Staphylococcus epidermidis isolated from postoperative endophthalmitis and the healthy conjunctiva
Cited by: 3
Author(s): Qing Liu, Nan Chen, Huabo Chen, Yusen Huang
Software Mentions: 1
Published: about 4 years ago

10.3389/fgene.2019.00929

Transcriptome Analysis Reveals That Alfalfa Promotes Rumen Development Through Enhanced Metabolic Processes and Calcium Transduction in Hu Lambs
Cited by: 9
Author(s): Bin Yang, Hongwei Chen, Jiawen Cao, Bo He, Shanshan Wang, Yang Luo, Jiakun Wang
Software Mentions: 1
Published: about 5 years ago

10.3389/fgene.2020.00494

Quantitative Estimation of Oxidative Stress in Cancer Tissue Cells Through Gene Expression Data Analyses
Cited by: 6
Author(s): Liyang Liu, Haining Cui, Ying Xu
Software Mentions: 1
Published: over 4 years ago

10.1038/s41416-021-01441-7

Essential role of the histone lysine demethylase KDM4A in the biology of malignant pleural mesothelioma (MPM)
Cited by: 4
Author(s): Moshe Lapidot, Abigail Case, Ellen Weisberg, Chengcheng Meng, Sarah R. Walker, Swati Garg, Wei Ni, Klaus Podar, Yin P. Hung, Ruben D. Carrasco, Aine Knott, Prafulla C. Gokhale, Sunil Sharma, Alex Pozhitkov, Prakash Kulkarni, David A. Frank, Ravi Salgia, James D. Griffin, Srinivas Vinod Saladi, Raphael Bueno, Martin Sattler
Software Mentions: 1
Published: over 3 years ago

10.3389/fgene.2020.00534

Novel Insights Into Triple-Negative Breast Cancer Prognosis by Comprehensive Characterization of Aberrant Alternative Splicing
Cited by: 8
Author(s): Shasha Gong, Zhijian Song, David Ethan Spezia-Lindner, Feilong Meng, Tingting Ruan, Guangzhi Ying, Changhong Lai, Qianqian Wu, Yong Liang
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-72117-0

A central role for the transcriptional regulator VtlR in small RNA-mediated gene regulation in Agrobacterium tumefaciens
Cited by: 9
Author(s): James A. Budnick, Lauren M. Sheehan, Miranda. J. Ginder, Kevin C. Failor, Julia. M. Perkowski, John. F. Pinto, Kirsten A. Kohl, Lin Kang, Pawel Michalak, Li Luo, Jason E. Heindl, Clayton C. Caswell
Software Mentions: 1
Published: about 4 years ago

10.3389/fgene.2020.00881

SlGID1a Is a Putative Candidate Gene for qtph1.1, a Major-Effect Quantitative Trait Locus Controlling Tomato Plant Height
Cited by: 4
Author(s): Xiaolin Liu, Wencai Yang, Jing Wang, Ming Yang, Kai Wei, Xiaoyan Liu, Zhengkun Qiu, Tong van Giang, Xiaoxuan Wang, Yanmei Guo, Junming Li, Lei Liu, Jinshuai Shu, Yan Du, Zejun Huang
Software Mentions: 1
Published: over 4 years ago

10.3389/fendo.2021.687586

Metabolic Syndrome Is Associated With Altered mRNA and miRNA Content in Human Circulating Extracellular Vesicles
Cited by: 3
Author(s): Yongxin Li, Yijun Meng, Xiangyang Zhu, André J. van Wijnen, Alfonso Eirin, Lilach O. Lerman
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-020-72448-y

Proteasomal degradation of polycomb-group protein CBX6 confers MMP-2 expression essential for mesothelioma invasion
Cited by: 6
Author(s): Katsuya Sakai, Takumi Nishiuchi, Shoichiro Tange, Yoshinori Suzuki, Seiji Yano, Minoru Terashima, Takeshi Suzuki, Kunio Matsumoto
Software Mentions: 1
Published: about 4 years ago

10.3389/fendo.2016.00165

Muscle Contraction Induces Acute Hydroxymethylation of the Exercise-Responsive Gene Nr4a3
Cited by: 28
Author(s): Pattarawan Pattamaprapanont, Christian Garde, Odile Fabre, Romain Barrès
Software Mentions: 1
Published: almost 8 years ago

10.3389/fendo.2018.00574

Leptin Selectively Regulates Nutrients Metabolism in Nile Tilapia Fed on High Carbohydrate or High Fat Diet
Cited by: 33
Author(s): Caizhi Liu, Anbang He, Lei Ning, Yuan Luo, Dongliang Li, Meiling Zhang, Liqiao Chen, Zhen‐Yu Du
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-020-74049-1

De novo transcriptome analysis of the critically endangered alpine Himalayan herb Nardostachys jatamansi reveals the biosynthesis pathway genes of tissue-specific secondary metabolites
Cited by: 8
Author(s): Nisha Dhiman, Anil Kumar, Dinesh Kumar, Amita Bhattacharya
Software Mentions: 1
Published: about 4 years ago

10.1038/s41413-018-0037-4

Characterization of a novel murine Sost ERT2 Cre model targeting osteocytes
Cited by: 19
Author(s): Daniel Maurel, Tsutomu Matsumoto, Julian Vallejo, Mark Johnson, Sarah L. Dallas, Yukiko Kitase, Marco Brotto, Michael Wacker, Marie A. Harris, S. E. Harris, Lynda F. Bonewald
Software Mentions: 1
Published: over 5 years ago

10.3389/fendo.2019.00553

Identification of a New Theca/Interstitial Cell-Specific Gene and Its Biological Role in Growth of Mouse Ovarian Follicles at the Gonadotropin-Independent Stage
Cited by: 6
Author(s): Masato Aoyama, Akira Shiraishi, Shin Matsubara, Kazuyuki Horie, Tomohiro Osugi, Toru Kawada, Keiko Yasuda, Honoo Satake
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-020-74789-0

Metabolomic and transcriptomic analyses reveal the regulation of pigmentation in the purple variety of Dendrobium officinale
Cited by: 23
Author(s): Xinqiao Zhan, Jufeng Qi, Bin Zhou, Bizeng Mao
Software Mentions: 1
Published: about 4 years ago

10.3389/fendo.2021.650625

Estrogen Receptor Beta Influences the Inflammatory p65 Cistrome in Colon Cancer Cells
Cited by: 1
Author(s): Rajitha Indukuri, Linnea Hases, Amena Archer, Cecilia Williams
Software Mentions: 1
Published: over 3 years ago

10.3389/fendo.2021.743155

Identification of mRNA Prognostic Markers for TGCT by Integration of Co-Expression and CeRNA Network
Cited by: 3
Author(s): Fang Zhu, Zhizhong Liu, Qianyin Zhou, Jingyu Fan, Dai Zhou, Xing Liu, Hao Bo, Le Tang, Liqing Fan
Software Mentions: 1
Published: about 3 years ago

10.1186/s13068-015-0245-8

Uniconazole-induced starch accumulation in the bioenergy crop duckweed (Landoltia punctata) II: transcriptome alterations of pathways involved in carbohydrate metabolism and endogenous hormone crosstalk
Cited by: 46
Author(s): Yang Liu, Yang Fang, Mengjun Huang, Yanling Jin, Jiaolong Sun, Tao Xiang, Guohua Zhang, Kai He, Yun Zhao, Hai Zhao
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-020-73164-3

Assessing the prognostic value of stemness-related genes in breast cancer patients
Cited by: 5
Author(s): Wenjie Wang, Han Wang, Meng-Sen Wang, Yongzhen Huang, Yuan Ma, Jie Qi, Jianping Shi, Wei Li
Software Mentions: 1
Published: about 4 years ago

10.1038/s41598-020-75537-0

Enhanced FGFR3 activity in postmitotic principal neurons during brain development results in cortical dysplasia and axonal tract abnormality
Cited by: 5
Author(s): Jui-Yen Huang, Bruna Baumgarten Krebs, Marisha Lynn Miskus, May Lin Russell, Eamonn Patrick Duffy, Jason Michael Graf, Hui-Chen Lu
Software Mentions: 1
Published: about 4 years ago

10.3389/fncel.2020.566148

Pioglitazone Ameliorates Gentamicin Ototoxicity by Affecting the TLR and STAT Pathways in the Early Postnatal Organ of Corti
Cited by: 3
Author(s): Marijana Sekulic-Jablanovic, Matthew B. Wright, Vesna Petkovic, Daniel Bodmer
Software Mentions: 1
Published: about 4 years ago

10.3389/fcimb.2018.00231

The Stringent Response-Regulated sRNA Transcriptome of Borrelia burgdorferi
Cited by: 20
Author(s): Dan Drecktrah, Laura S. Hall, Philipp Rescheneder, Meghan Lybecker, D. Scott Samuels
Software Mentions: 1
Published: over 6 years ago

10.3389/fcimb.2020.00066

Isoforms of Cathepsin B1 in Neurotropic Schistosomula of Trichobilharzia regenti Differ in Substrate Preferences and a Highly Expressed Catalytically Inactive Paralog Binds Cystatin
Cited by: 3
Author(s): Hana Dvořáková, Roman Leontovyč, Tomáš Macháček, Anthony J. O’Donoghue, Ondřej Šedo, Zbyněk Zdráhal, Charles S. Craik, Conor R. Caffrey, Petr Horák, Libor Mikeš
Software Mentions: 1
Published: over 4 years ago

10.3389/fcimb.2017.00004

Repurposing Approach Identifies Auranofin with Broad Spectrum Antifungal Activity That Targets Mia40-Erv1 Pathway
Cited by: 64
Author(s): Shankar Thangamani, Matthew C. Maland, Haroon Mohammad, Pete E. Pascuzzi, Larisa Avramova, Carla M. Koehler, Tony R. Hazbun, Mohamed N. Seleem
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41598-020-76171-6

Characterization of transcriptional response of Lactobacillus plantarum under acidic conditions provides insight into bacterial adaptation in fermentative environments
Cited by: 6
Author(s): Sera Jung, Jong Hee Lee
Software Mentions: 1
Published: about 4 years ago

10.18632/oncotarget.26071

Intratumor heterogeneity ofHMCN1mutant alleles associated with poor prognosis in patients with breast cancer
Cited by: 16
Author(s): Chie Kikutake, Minako Yoshihara, Tetsuya Sato, Daisuke Saito, Mikita Suyama
Software Mentions: 1
Published: about 6 years ago

10.3389/fcimb.2020.00097

RNA-Seq Revealed a Circular RNA-microRNA-mRNA Regulatory Network in Hantaan Virus Infection
Cited by: 64
Author(s): Shuang Lu, Ni Zhu, Weiwei Guo, Xin Wang, Kaiji Li, Jie Yan, Cuiping Jiang, Han Shi-yu, Hanmin Xiang, Xiaohan Wu, Yuanyuan Liu, Hairong Xiong, Liangjun Chen, Zuojiong Gong, Fan Luo, Wei Hou
Software Mentions: 1
Published: over 4 years ago

10.1186/s12967-019-1987-z

Frequent genetic aberrations in the cell cycle related genes in mucosal melanoma indicate the potential for targeted therapy
Cited by: 18
Author(s): Lina Xu, Zhiyuan Cheng, Chuanliang Cui, Xiaowen Wu, Huan Yu, Jun Guo, Yan Kong
Software Mentions: 1
Published: over 5 years ago

10.3389/fcimb.2020.575630

Comparative Transcriptomics of Shiga Toxin-Producing and Commensal Escherichia coli and Cytokine Responses in Colonic Epithelial Cell Culture Infections
Cited by: 2
Author(s): Lisa M. Harrison, David W. Lacher, Mark K. Mammel, Susan R. Leonard
Software Mentions: 1
Published: about 4 years ago

10.3389/fcimb.2021.662563

Transcriptome Signatures Predict Phenotypic Variations of Candida auris
Cited by: 11
Author(s): Sabrina Jenull, Michael Tscherner, Nataliia D. Kashko, Raju Shivarathri, Anton Stoiber, Manju Chauhan, Andriy Petryshyn, Neeraj Chauhan, Karl Kuchler
Software Mentions: 1
Published: over 3 years ago

10.3389/fcimb.2017.00045

Colistin Resistance in Acinetobacter baumannii MDR-ZJ06 Revealed by a Multiomics Approach
Cited by: 30
Author(s): Xiaoting Hua, Lilin Liu, Youhong Fang, Qiucheng Shi, Xi Li, Qiong Chen, Kezhang Shi, Yan Jiang, Hua Zhou, Yunsong Yu
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-020-74594-9

Involvement of neutrophils in machineries underlying the rupture of intracranial aneurysms in rats
Cited by: 19
Author(s): Mika Kushamae, Haruka Miyata, Makoto Shirai, Kampei Shimizu, Mieko Oka, Hirokazu Koseki, Yu Abekura, Isao Ono, Kazuhiko Nozaki, Tohru Mizutani, Tomohiro Aoki
Software Mentions: 1
Published: about 4 years ago

10.3389/fcell.2020.579708

Transcriptome Analysis Reveals the Potential Role of Long Non-coding RNAs in Mammary Gland of Yak During Lactation and Dry Period
Cited by: 6
Author(s): Xiaoyun Wu, Xiaofang Zhou, Lin Xiong, Jie Pei, Xixi Yao, Chunnian Liang, Pengjia Bao, Min Chen, Xian Guo, Ping Yan
Software Mentions: 1
Published: almost 4 years ago

10.3389/fcell.2021.593677

The Cancer-Testis Long Non-coding RNA PCAT6 Facilitates the Malignant Phenotype of Ovarian Cancer by Sponging miR-143-3p
Cited by: 6
Author(s): Xiaofang Tan, Yang Shao, Yue Teng, Siyu Liu, Weijian Li, Lu Xue, Yuepeng Cao, Chongqi Sun, Jinhong Zhang, Jing Han, Xiaoli Wu, Hanzi Xu, Kaipeng Xie
Software Mentions: 1
Published: almost 4 years ago

10.1186/s13068-019-1377-z

Enhancing co-translational folding of heterologous protein by deleting non-essential ribosomal proteins in Pichia pastoris
Cited by: 7
Author(s): Xihao Liao, Jing Zhao, Shuli Liang, Jingjie Jin, Li Cheng, Ruiming Xiao, Lu Li, Meijin Guo, Gong Zhang, Ying Lin
Software Mentions: 1
Published: over 5 years ago

10.3389/fcell.2021.727353

Multiomics Analysis of Neuroblastoma Cells Reveals a Diversity of Malignant Transformations
Cited by: 2
Author(s): Milda Narmontė, Povilas Gibas, Kristina Daniūnaitė, Juozas Gordevičius, Edita Kriukienė
Software Mentions: 1
Published: about 3 years ago

10.1038/s41598-020-77177-w

Transcriptome analyses reveals the dynamic nature of oil accumulation during seed development of Plukenetia volubilis L.
Cited by: 6
Author(s): Lu Guo, Zhihua Wu, Peng Yan, Xiuhua Shang, Yi Xie, R. J. Arnold
Software Mentions: 1
Published: almost 4 years ago

10.1038/s41598-020-77598-7

Functional characterisation of the transcriptome from leaf tissue of the fluoroacetate-producing plant, Dichapetalum cymosum, in response to mechanical wounding
Cited by: 7
Author(s): Selisha A. Sooklal, Phelelani T. Mpangase, Mihai-Silviu Tomescu, Shaun Aron, Scott Hazelhurst, Robert H. Archer, Karl Rumbold
Software Mentions: 1
Published: almost 4 years ago

10.3389/fcell.2021.704341

NAT10-Mediated N4-Acetylcytidine of RNA Contributes to Post-transcriptional Regulation of Mouse Oocyte Maturation in vitro
Cited by: 11
Author(s): Yuting Xiang, Chuanchuan Zhou, Yanyan Zeng, Qi Guo, Jiana Huang, Taibao Wu, Jiawen Liu, Qiqi Liang, Haitao Zeng, Xiaoyan Liang
Software Mentions: 1
Published: over 3 years ago

10.3389/fcell.2019.00337

mTORC1-Rps15 Axis Contributes to the Mechanisms Underlying Global Translation Reduction During Senescence of Mouse Embryonic Fibroblasts
Cited by: 4
Author(s): Su Wu, Siyao Xu, Ruofei Li, Kecheng Li, Xiaoqin Zhong, Yingying Li, Zhifen Zhou, Yi Liu, Ran Feng, Jianfei Zheng, Zhou Songyang, Feng Liu
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-020-77293-7

Comparative transcriptome analysis implied a ZEP paralog was a key gene involved in carotenoid accumulation in yellow-fleshed sweetpotato
Cited by: 13
Author(s): Koichi Suematsu, Masaru Tanaka, Rie Kurata, Kai Yu
Software Mentions: 1
Published: almost 4 years ago

10.1186/s12967-019-2032-y

Prognosis of clear cell renal cell carcinoma (ccRCC) based on a six-lncRNA-based risk score: an investigation based on RNA-sequencing data
Cited by: 31
Author(s): Jiang‐Hui Zeng, Wei Lü, Liang Liang, Gang Chen, Huihua Lan, Xiu-Yun Liang, Xu Zhu
Software Mentions: 1
Published: about 5 years ago

10.3389/fcell.2021.713503

Establishment of Mouse Primed Stem Cells by Combination of Activin and LIF Signaling
Cited by: 2
Author(s): Mengyi Wei, Yanglin Chen, Chaoyue Zhao, Zheng Li, Baojiang Wu, Chen Chen, Xihe Li, Siqin Bao
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-020-78976-x

Early pregnancy maternal progesterone administration alters pituitary and testis function and steroid profile in male fetuses
Cited by: 13
Author(s): Katarzyna Siemienowicz, Yili Wang, Magda Marečková, Junko Nio‐Kobayashi, Paul A. Fowler, Michael T. Rae, W. Colin Duncan
Software Mentions: 1
Published: almost 4 years ago

10.1038/s41598-020-78781-6

Identifying transcription factors that reduce wood recalcitrance and improve enzymatic degradation of xylem cell wall in Populus
Cited by: 6
Author(s): Chiaki Hori, Naoki Takata, Pui Ying Lam, Yuki Tobimatsu, Soichiro Nagano, Jenny C. Mortimer, Dan Cullen
Software Mentions: 1
Published: almost 4 years ago

10.18632/oncotarget.26401

Exploiting the transcriptional specificity of the alpha-methylacyl-CoA racemase AMACR promoter for the molecular imaging of prostate cancer
Cited by: 4
Author(s): Mariya Shapovalova, Julia Davydova, Christine Henzler, Mark Daniel, Scott M. Dehm, Christopher A. Warlick, Aaron M. LeBeau
Software Mentions: 1
Published: almost 6 years ago

10.18632/oncotarget.26377

Targeting the Wnt/β-catenin pathway in human osteosarcoma cells
Cited by: 43
Author(s): Fang Fang, Ashley M. VanCleave, Ralph Helmuth, Haydee M. Torres, Kirby Rickel, Hannah Wollenzien, Hongli Sun, Erliang Zeng, Jing Zhao, Jianning Tao
Software Mentions: 1
Published: almost 6 years ago

10.3389/fcell.2020.00527

Transcriptome Characterization of Repressed Embryonic Myogenesis Due to Maternal Calorie Restriction
Cited by: 2
Author(s): Jun He, Ying He, Bing Yu, Xuelian Wang, Shuai Chen
Software Mentions: 1
Published: over 4 years ago

10.3389/fcell.2021.631413

Role of VEGFR2 in Mediating Endoplasmic Reticulum Stress Under Glucose Deprivation and Determining Cell Death, Oxidative Stress, and Inflammatory Factor Expression
Cited by: 2
Author(s): Bohan Xu, Leocadia Zhou, Qishan Chen, Jianing Zhang, Lijuan Huang, Shasha Wang, Zhimin Ye, Xianyue Ren, Yu Cai, Lasse D. Jensen, Weirong Chen, Xuri Li, Rong Ju
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-020-80837-6

Transcriptome and phytochemical analyses provide insights into the organic sulfur pathway in Allium hirtifolium
Cited by: 6
Author(s): Aboozar Soorni, Amir Mohammad Akrami, Reza Abolghasemi, Maryam Vahedi
Software Mentions: 1
Published: almost 4 years ago

10.1038/s41598-020-80280-7

Comparative transcriptome analysis reveals resistant and susceptible genes in tobacco cultivars in response to infection by Phytophthora nicotianae
Cited by: 15
Author(s): He Meng, Mingming Sun, Zipeng Jiang, Yutong Liu, Yu Sun, Dan Liŭ, Caihong Jiang, Min Ren, Guangdi Yuan, Wenlong Yu, Qi Sheng Feng, Aiguo Yang, Lei Cheng, Yuanying Wang
Software Mentions: 1
Published: almost 4 years ago

10.3389/fcell.2021.641618

Implementation of CRISPR/Cas9 Genome Editing to Generate Murine Lung Cancer Models That Depict the Mutational Landscape of Human Disease
Cited by: 18
Author(s): Oliver Hartmann, Michaela Reissland, Carina R. Maier, Thomas Fischer, Cristian Prieto-Garcia, Apoorva Baluapuri, Jessica Denise Schwarz, W. Schmitz, Martín Garrido‐Rodriguez, Nikolett Pahor, Clare C. Davies, Florian Bassermann, Amir Orian, Elmar Wolf, Almut Schulze, Marco A. Calzado, Mathias T. Rosenfeldt, Markus E. Diefenbacher
Software Mentions: 1
Published: over 3 years ago

10.1186/s13068-015-0203-5

Genome-wide transcriptional analysis suggests hydrogenase- and nitrogenase-mediated hydrogen production in Clostridium butyricum CWBI 1009
Cited by: 34
Author(s): Magdalena Całusińska, Christopher Hamilton, Pieter Monsieurs, Grégory Mathy, Natalie Leys, Fabrice Franck, Bernard Joris, Philippe Thonart, Serge Hiligsmann, Annick Wilmotte
Software Mentions: 1
Published: over 9 years ago

10.3389/fcell.2020.577221

Ulcerative Colitis-Derived Colonoid Culture: A Multi-Mineral-Approach to Improve Barrier Protein Expression
Cited by: 13
Author(s): Muhammad N. Aslam, Shannon D. McClintock, Durga Attili, Shailja Pandya, Humza Rehman, Daniyal M. Nadeem, Mohamed Ali H Jawad-Makki, Areeba H. Rizvi, Maliha M Berner, Michael K. Dame, D. Kim Turgeon, James Varani
Software Mentions: 1
Published: almost 4 years ago

10.1042/BSR20203973

Identification of KIF4A and its effect on the progression of lung adenocarcinoma based on the bioinformatics analysis
Cited by: 9
Author(s): Yexun Song, Wen-Fang Tang, Hui Li
Software Mentions: 1
Published: almost 4 years ago

10.1038/s41598-021-81164-0

Androgen receptor and its splice variant, AR-V7, differentially induce mRNA splicing in prostate cancer cells
Cited by: 9
Author(s): Manjul Rana, Jianrong Dong, Matthew J. Robertson, Cristian Coarfa, Nancy L. Weigel
Software Mentions: 1
Published: almost 4 years ago

10.3389/fcell.2019.00249

MiR-144-3p Enhances Cardiac Fibrosis After Myocardial Infarction by Targeting PTEN
Cited by: 38
Author(s): Xiaolong Yuan, Jinchun Pan, Liang Wen, Baoyong Gong, Jiaqi Li, Hongbin Gao, Weijiang Tan, Shi Liang, Hao Zhang, Xilong Wang
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-020-80680-9

GATA3 somatic mutations are associated with clinicopathological features and expression profile in TCGA breast cancer patients
Cited by: 14
Author(s): Fahimeh Afzaljavan, Ayeh Sadat Sadr, Sevtap Savas, Alireza Pasdar
Software Mentions: 1
Published: almost 4 years ago

10.18632/oncotarget.27493

DOT1L inhibition is lethal for multiple myeloma due to perturbation of the endoplasmic reticulum stress pathway
Cited by: 10
Author(s): Caroline Dafflon, Swann Gaulis, Louise Barys, Karen Kapur, Vanessa Cornacchione, Lina Schukur, Sebastian Bergling, Elisabetta Traggiai, Selina Jansky, Leon Hellmann, Barbara Schacher Engstler, Gráinne Kerr, Antoine DeWeck, David A. Ruddy, Ulrike Naumann, Frédéric Stauffer, Christoph Gaul, Ying Lin, Éric Billy, Andreas Weiss, Francesco Hofmann, Moriko Ito, Ralph Tiedt
Software Mentions: 1
Published: over 4 years ago

10.3389/fcvm.2018.00016

Temporal Dynamics of Gene Expression During Endothelial Cell Differentiation From Human iPS Cells: A Comparison Study of Signalling Factors and Small Molecules
Cited by: 7
Author(s): Heini Belt, Jonna Koponen, Tuija Kekarainen, Katja A. Puttonen, Petri Mäkinen, Henri Niskanen, Joni Oja, Galina Wirth, Jari Koistinaho, Minna U. Kaikkonen, Seppo Ylä‐Herttuala
Software Mentions: 1
Published: over 6 years ago

10.1155/2017/2503847

Fish Oil Feeding Modulates the Expression of Hepatic MicroRNAs in a Western-Style Diet-Induced Nonalcoholic Fatty Liver Disease Rat Model
Cited by: 11
Author(s): Hualin Wang, Yang Shao, Fahu Yuan, Na Li, Hongyu Zhang, Chaodong Wu, Zhiguo Liu
Software Mentions: 1
Published: almost 8 years ago

10.1042/BSR20191731

A susceptibility biomarker identification strategy based on significantly differentially expressed ceRNA triplets for ischemic cardiomyopathy
Cited by: 3
Author(s): Yongxin Zou, Yahui Wang, Zherou Rong, Benliang Wei, Yang Liu, Zhaona Song, Wenshuai Li, Erqiang Hu, Gui Deng, Yuehan He, Jun-Jie Liu, Lina Chen, Wan Li
Software Mentions: 1
Published: almost 5 years ago

10.3389/fbioe.2020.00679

IGF2BP3 May Contributes to Lung Tumorigenesis by Regulating the Alternative Splicing of PKM
Cited by: 24
Author(s): Xing Huang, Jun Zhang, Yuming Jiang, Xin Liao, Liya Hu, Yuanyuan Fang, Yuting Zhang, Hao Zeng, Hua Wu, Jian Liu, Tie-jun Yin
Software Mentions: 1
Published: about 4 years ago

10.3389/fbioe.2020.00075

MiR-29c-3p Suppresses the Migration, Invasion and Cell Cycle in Esophageal Carcinoma via CCNA2/p53 Axis
Cited by: 18
Author(s): Haiyong Wang, Linhai Fu, Desheng Wei, Bin Wang, Chu Zhang, Ting Zhu, Zhifeng Ma, Zhupeng Li, Yifan Wu, Guanzhen Yu
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-021-81856-7

Freshwater mussels (Unionidae) brought into captivity exhibit up-regulation of genes involved in stress and energy metabolism
Cited by: 10
Author(s): Ieva Roznere, Brandon T. Sinn, Marymegan Daly, G. Thomas Watters
Software Mentions: 1
Published: almost 4 years ago

10.1038/s41598-021-82284-3

Notch signaling-modified mesenchymal stem cells improve tissue perfusion by induction of arteriogenesis in a rat hindlimb ischemia model
Cited by: 7
Author(s): Shigeru Miyagawa, Shigeru Miyagawa, Takuji Kawamura, Takashi Shibuya, Kenichi Watanabe, Tomoya Nakagawa, Akira Harada, Dai Chida, Yoshiki Sawa
Software Mentions: 1
Published: almost 4 years ago

10.3389/fnagi.2018.00024

Plasma Exosomal miRNA-122-5p and miR-300-3p as Potential Markers for Transient Ischaemic Attack in Rats
Cited by: 48
Author(s): Dongbin Li, Jingli Liu, Wei Wang, Xiumei Luo, Xia Zhou, LI Jin-pin, Xiaoli Cao, Xiaoyan Long, Jia-Gui Chen, Chao Qin
Software Mentions: 1
Published: almost 7 years ago

10.3389/fnagi.2021.646729

Krüppel-Like Factor 6 Silencing Prevents Oxidative Stress and Neurological Dysfunction Following Intracerebral Hemorrhage via Sirtuin 5/Nrf2/HO-1 Axis
Cited by: 7
Author(s): Jia Sun, Jinzhong Cai, Junhui Chen, Siqiaozhi Li, Xin Liao, Yijie He, Xudong Chen, Sean Hu
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-021-82509-5

Long non-coding RNAs as novel therapeutic targets in juvenile myelomonocytic leukemia
Cited by: 7
Author(s): Mattias Hofmans, Tim Lammens, Barbara Depreter, Ying Wu, Miriam Erlacher, Aurélie Cayé, Hélène Cavé, Christian Flotho, Valérie de Haas, Charlotte M. Niemeyer, Jan Starý, Filip Van Nieuwerburgh, Dieter Deforce, Wouter Van Loocke, Pieter Van Vlierberghe, Jan Philippé, Barbara De Moerloose
Software Mentions: 1
Published: almost 4 years ago

10.1038/s41598-021-83074-7

Small RNAs and their targets are associated with the transgenerational effects of water-deficit stress in durum wheat
Cited by: 13
Author(s): Haipei Liu, Amanda J. Able, Jason A. Able
Software Mentions: 1
Published: almost 4 years ago

10.1042/BSR20191845

miR-96-5p enhances cell proliferation and invasion via targeted regulation of ZDHHC5 in gastric cancer
Cited by: 8
Author(s): Baolong Wang, Xianrong Liu, Xiangtao Meng
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-021-82848-3

A transcriptomic view to wounding response in young Scots pine stems
Cited by: 9
Author(s): Kean‐Jin Lim, Tanja Paasela, Anni Harju, Martti Venäläinen, Lars Paulín, Petri Auvinen, Katri Kärkkäinen, Teemu H. Teeri
Software Mentions: 1
Published: almost 4 years ago

10.1002/fsn3.1194

Combining of transcriptome and metabolome analyses for understanding the utilization and metabolic pathways of Xylo‐oligosaccharide inBifidobacterium adolescentisATCC 15703
Cited by: 14
Author(s): Jian Yang, Qilong Tang, Lei Xu, Zhijiang Li, Yina Ma, Di Yao
Software Mentions: 1
Published: about 5 years ago

10.1186/s13018-021-02508-0

Cornuside I promoted osteogenic differentiation of bone mesenchymal stem cells through PI3K/Akt signaling pathway
Cited by: 5
Author(s): Feng Gao, Shuhua Xia, Xiuhui Wang, Xiaoxiao Zhou, Jun Wang
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-021-83835-4

Lysosome repositioning as an autophagy escape mechanism by Mycobacterium tuberculosis Beijing strain
Cited by: 12
Author(s): Thanida Laopanupong, Pinidphon Prombutara, Phongthon Kanjanasirirat, Salisa Benjaskulluecha, Atsadang Boonmee, Tanapat Palaga, Stéphane Méresse, Jiraporn Paha, Tegar Adriansyah Putra Siregar, Tanawadee Khumpanied, Suparerk Borwornpinyo, Angkana Chaiprasert, Pongsak Utaisincharoen, Marisa Ponpuak
Software Mentions: 1
Published: over 3 years ago

10.1002/fsn3.1897

Juice from Fructus Rosae Roxburghii normalizes blood lipids in mice with diet‐induced hyperlipidemia* †
Cited by: 2
Author(s): Pingping Song, Xiangchun Shen
Software Mentions: 1
Published: about 4 years ago

10.1038/s41420-020-00328-5

A defined N6-methyladenosine (m6A) profile conferred by METTL3 regulates muscle stem cell/myoblast state transitions
Cited by: 35
Author(s): Brandon Gheller, Jamie Blum, Ern Hwei Hannah Fong, Olga Malysheva, Benjamin D. Cosgrove, Anna Thalacker‐Mercer
Software Mentions: 1
Published: about 4 years ago

10.1038/s41598-021-84355-x

The role of gut microbiota and amino metabolism in the effects of improvement of islet β-cell function after modified jejunoileal bypass
Cited by: 9
Author(s): Cai Tan, Zhihua Zheng, Xiaogang Wan, Jiaqing Cao, Ran Wei, Jinyuan Duan
Software Mentions: 1
Published: over 3 years ago

10.1002/path.5551

Large‐scale analysis of <scp>BAP1</scp> expression reveals novel associations with clinical and molecular features of malignant pleural mesothelioma
Cited by: 22
Author(s): Assunta De Rienzo, Lucian R. Chirieac, Yin P. Hung, David T. Severson, Samuel Freyaldenhoven, Corinne E. Gustafson, Nhien Dao, Claire Meyerovitz, Michela E Oster, Roderick V. Jensen, Beow Y. Yeap, Raphael Bueno, William G. Richards
Software Mentions: 1
Published: about 4 years ago

10.1038/s41598-021-84402-7

Absence of X-chromosome dosage compensation in the primordial germ cells of Drosophila embryos
Cited by: 3
Author(s): Ryoma Ota, Makoto Hayashi, Shumpei Morita, Hideharu Miura, Satoru Kobayashi
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-021-84519-9

Comparative transcriptome profiles of large and small bodied large-scale loaches cultivated in paddy fields
Cited by: 3
Author(s): Liulan Zhao, Kuo He, Qing Xiao, Qiao Li, Wei Luo, Jie Luo, Hongmei Fu, Jiayao Li, Xugan Wu, Jun Du, Quan Gong, Xun Wang
Software Mentions: 1
Published: over 3 years ago

10.1038/s41420-021-00440-0

Dysregulation of miR-23b-5p promotes cell proliferation via targeting FOXM1 in hepatocellular carcinoma
Cited by: 9
Author(s): Xiaopei Yang, Shuguang Yang, Jun Song, Wenjie Yang, Jicheng Yang, Feng Zhang, Jianhua Rao
Software Mentions: 1
Published: over 3 years ago

10.1042/BSR20181173

MicroRNA-550a is associated with muscle system conferring poorer survival for esophageal cancer
Cited by: 2
Author(s): Housong Hong, Taisheng Liu, Haipeng Wu, Jinye Zhang, Xiaoshun Shi, Xiaobing Le, Allen M. Chen, Hong-ying Mo, Qianqian Huang, Zhou Hong-bin, Xin Rao
Software Mentions: 1
Published: over 5 years ago

10.7554/eLife.09594

A robust transcriptional program in newts undergoing multiple events of lens regeneration throughout their lifespan
Cited by: 28
Author(s): Konstantinos Sousounis, Feng Qi, Manisha Yadav, José Luis Millán, Fubito Toyama, Chikafumi Chiba, Yukiko Eguchi, Goro Eguchi, Panagiotis A. Tsonis
Software Mentions: 1
Published: about 9 years ago

10.1155/2020/7340312

Pediococcus acidilactici P25 Protected Caenorhabditis elegans against Enterotoxigenic Escherichia coli K88 Infection and Transcriptomic Analysis of Its Potential Mechanisms
Cited by: 9
Author(s): Keqin Tan, Dun Deng, Xianyong Ma, Yiyan Cui, Zhonghuan Tian
Software Mentions: 1
Published: over 4 years ago

10.7554/eLife.68054

SMA-miRs (miR-181a-5p, -324-5p, and -451a) are overexpressed in spinal muscular atrophy skeletal muscle and serum samples
Cited by: 9
Author(s): Emanuela Abiusi, Paola Infante, Cinzia Cagnoli, Ludovica Lospinoso Severini, Marika Pane, Giorgia Coratti, Maria Carmela Pera, Adele D’Amico, F Diano, Agnese Novelli, Serena Spartano, Stefania Fiori, Giovanni Baranello, Isabella Moroni, Marina Mora, Maria Barbara Pasanisi, Krizia Pocino, Loredana Le Pera, Davide D’Amico, Lorena Travaglini, Francesco Ria, Claudio Bruno, Denise Locatelli, Enrico Bertini, Lucia Morandi, Eugenio Mercuri, Lucia Di Marcotullio, Francesco Danilo Tiziano
Software Mentions: 1
Published: about 3 years ago

10.7554/eLife.08833

Suppression of transcriptional drift extends C. elegans lifespan by postponing the onset of mortality
Cited by: 68
Author(s): Sunitha Rangaraju, Gregory M. Solis, Ryan Thompson, Rafael L. Gomez‐Amaro, Leo Kurian, Sandra E. Encalada, Alexander B. Niculescu, Daniel R. Salomon, Michael Petrascheck
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41420-019-0152-z

The whole transcriptome and proteome changes in the early stage of myocardial infarction
Cited by: 15
Author(s): Yanfei Li, Cuiping Wang, Tingting Li, Linlin Ma, Fangzhou Fan, Yueling Jin, Junwei Shen
Software Mentions: 1
Published: over 5 years ago

Projects: bioconductor: edgeR

Papers Mentioning edgeR 6,568