bioconductor: edgeR | Projects | Ecosyste.ms: Papers

10.1038/s41598-017-14673-6

Epigenetics and adaptive phenotypic variation between habitats in an asexual snail
Cited by: 50
Author(s): Jennifer L. M. Thorson, Mark W. Smithson, Daniel Beck, Ingrid Sadler‐Riggleman, Eric Nilsson, Mark F. Dybdahl, Michael K. Skinner
Software Mentions: 1
Published: almost 9 years ago

10.1186/1471-2180-14-31

Hyperexpression of α-hemolysin explains enhanced virulence of sequence type 93 community-associated methicillin-resistant Staphylococcus aureus
Cited by: 46
Author(s): Kyra Chua, Ian R. Monk, Ya-Hsun Lin, Torsten Seemann, Kellie L. Tuck, Jessica L. Porter, Justin Stepnell, Geoffrey W. Coombs, John K. Davies, Timothy P. Stinear, Benjamin P Howden
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0245613

A transcriptomic analysis of sugarcane response to Leifsonia xyli subsp. xyli infection
Cited by: 7
Author(s): Kai Zhu, Li‐Tao Yang, Chengxi Li, Prakash Lakshmanan, Yong‐Xiu Xing, Yang–Rui Li
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-017-14736-8

Differential gene expression of Australian Cricotopus draysoni (Diptera: Chironomidae) populations reveals seasonal association in detoxification gene regulation
Cited by: 5
Author(s): Matt N. Krosch, Litticia M. Bryant, Sue Vink
Software Mentions: 1
Published: almost 9 years ago

10.26508/lsa.202000688

IL-36 signaling in keratinocytes controls early IL-23 production in psoriasis-like dermatitis
Cited by: 33
Author(s): Jack Goldstein, Esen Yonca Bassoy, Assunta Caruso, Jennifer Palomo, Emiliana Rodriguez, Sylvain Lemeille, Cem Gabay
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-017-13999-5

The non-invasive exfoliated transcriptome (exfoliome) reflects the tissue-level transcriptome in a mouse model of NSAID enteropathy
Cited by: 19
Author(s): Canaan Whitfield-Cargile, Noah D. Cohen, Kejun He, Ivan Ivanov, Jennifer S. Goldsby, Ana M. Chamoun‐Emanuelli, Brad R. Weeks, Laurie A. Davidson, Robert S. Chapkin
Software Mentions: 1
Published: almost 9 years ago

10.7554/eLife.59469

Adrenergic activation modulates the signal from the Reissner fiber to cerebrospinal fluid-contacting neurons during development
Cited by: 20
Author(s): Yasmine Cantaut-Belarif, Adeline Orts-Del’Immagine, Margot Penru, Guillaume Pézeron, Claire Wyart, Pierre-Luc Bardet
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-017-14808-9

Antibiotics induce polarization of pleural macrophages to M2-like phenotype in patients with tuberculous pleuritis
Cited by: 13
Author(s): Sisi Wang, Jian Zhang, Liyan Sui, Hao Xu, Qianling Piao, Ying Liu, Xiangping Qu, Ying Sun, Lei Song, Dan Li, Liping Peng, Shucheng Hua, Guangan Hu, Jianzhu Chen
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0196681

Identification of cancer-related miRNA-lncRNA biomarkers using a basic miRNA-lncRNA network
Cited by: 51
Author(s): Guangle Zhang, Cong Pian, Zhi Chen, Jin Zhang, Mei‐Ling Xu, Liangyun Zhang, Yuanyuan Chen
Software Mentions: 1
Published: over 8 years ago

10.3390/cancers12113090

USP1 Regulates TAZ Protein Stability Through Ubiquitin Modifications in Breast Cancer
Cited by: 29
Author(s): Ashley L. Mussell, He Shen, Yanmin Chen, Michalis Mastri, Kevin H. Eng, Wiam Bshara, Costa Frangou, Jianmin Zhang
Software Mentions: 1
Published: almost 6 years ago

10.3390/cancers11091273

Etiology-Specific Analysis of Hepatocellular Carcinoma Transcriptome Reveals Genetic Dysregulation in Pathways Implicated in Immunotherapy Efficacy
Cited by: 9
Author(s): Wei Tse Li, Angela E. Zou, Christine O. Honda, Hao Zheng, Xiao Qi Wang, Tatiana Kisseleva, Eric Y. Chang, Weg M. Ongkeko
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-017-14913-9

Differential transcriptome regulation by 3,5-T2 and 3′,3,5-T3 in brain and liver uncovers novel roles for thyroid hormones in tilapia
Cited by: 16
Author(s): Arturo Olverá, Christopher J. Martyniuk, Nicolas Buisine, Verónica Jiménez-Jacinto, Alejandro Sánchez-Flores, Laurent M. Sachs, Aurea Orozco
Software Mentions: 1
Published: almost 9 years ago

10.18632/oncotarget.15947

UBE2T knockdown inhibits gastric cancer progression
Cited by: 46
Author(s): Changjiang Luo, Yunyi Yao, Zeyuan Yu, Huinian Zhou, Ling‐Yun Guo, Junqiang Zhang, Hongtai Cao, Genyuan Zhang, Yumin Li, Jiao Zhang
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-017-15699-6

Transcriptomic analysis of the regulation of stalk development in flowering Chinese cabbage (Brassica campestris) by RNA sequencing
Cited by: 17
Author(s): Xinmin Huang, Yuling Lei, Hongling Guan, Yanwei Hao, Houcheng Liu, Guangwen Sun, Riyuan Chen, Shiwei Song
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41419-018-0705-8

Jnk2 deficiency increases the rate of glaucomatous neurodegeneration in ocular hypertensive DBA/2J mice
Cited by: 16
Author(s): Jeffrey M Harder, Pete A. Williams, Ileana Soto, Nicole E. Foxworth, Kimberly A. Fernandes, Nelson F. Freeburg, Richard T. Libby, Simon W. M. John
Software Mentions: 1
Published: about 8 years ago

10.1186/s12967-020-02639-8

Plasma exosome-derived microRNAs expression profiling and bioinformatics analysis under cross-talk between increased low-density lipoprotein cholesterol level and ATP-sensitive potassium channels variant rs1799858
Cited by: 7
Author(s): Cheng Liu, Yanxian Lai, Songsong Ying, Junfang Zhan, Yan Shen
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41419-019-2027-x

Circ-Spidr enhances axon regeneration after peripheral nerve injury
Cited by: 22
Author(s): Susu Mao, Tao Huang, Yuanyuan Chen, Longxiang Shen, Shuoshuo Zhou, Shanshan Zhang, Bin Yu
Software Mentions: 1
Published: almost 7 years ago

10.3390/cancers11121919

The Landscape of Long Non-Coding RNA Dysregulation and Clinical Relevance in Muscle Invasive Bladder Urothelial Carcinoma
Cited by: 4
Author(s): Haotian Shen, Lauren Wong, Wei Tse Li, Megan Chu, Rachel High, Eric Y. Chang, Jessica Wang‐Rodriguez, Weg M. Ongkeko
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-017-16611-y

OCT4 supports extended LIF-independent self-renewal and maintenance of transcriptional and epigenetic networks in embryonic stem cells
Cited by: 10
Author(s): Runsheng He, Besa Xhabija, Batool Al‐Qanber, Benjamin L. Kidder
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41419-021-03978-0

Novel FOXM1 inhibitor identified via gene network analysis induces autophagic FOXM1 degradation to overcome chemoresistance of human cancer cells
Cited by: 11
Author(s): Mikhail S. Chesnokov, Marianna Halasi, Soheila Borhani, Zarema Arbieva, Binal N. Shah, Rick Oerlemans, Irum Khan, Carlos J. Camacho, Andrei L. Gartel
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-017-16472-5

Identification of a histone family gene signature for predicting the prognosis of cervical cancer patients
Cited by: 42
Author(s): Xiaofang Li, Run Tian, Hugh Gao, Yongkang Yang, Bryan R.G. Williams, Michael P. Gantier, Nigel A.J. McMillan, Dakang Xu, Yiqun Hu, Yue Gao
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-16930-0

MALE STERILE6021 (MS6021) is required for the development of anther cuticle and pollen exine in maize
Cited by: 27
Author(s): Youhui Tian, Senlin Xiao, Juan Liu, Yamuna Somaratne, Hua Zhang, Mingming Wang, Huairen Zhang, Li Zhao, Huabang Chen
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-17140-4

Transcriptome analysis of watermelon (Citrullus lanatus) fruits in response to Cucumber green mottle mosaic virus (CGMMV) infection
Cited by: 41
Author(s): Xiaodong Li, Mengnan An, Zihao Xia, Xiaojiao Bai, Yuanhua Wu
Software Mentions: 1
Published: almost 9 years ago

10.1186/s12967-019-2032-y

Prognosis of clear cell renal cell carcinoma (ccRCC) based on a six-lncRNA-based risk score: an investigation based on RNA-sequencing data
Cited by: 31
Author(s): Jiang‐Hui Zeng, Wei Lü, Liang Liang, Gang Chen, Huihua Lan, Xiu-Yun Liang, Xu Zhu
Software Mentions: 1
Published: about 7 years ago

10.1038/s41419-020-03317-9

Histone deacetylase 2 regulates ULK1 mediated pyroptosis during acute liver failure by the K68 acetylation site
Cited by: 19
Author(s): Yao Wang, Qian Chen, Fangzhou Jiao, Chunxia Shi, Maohua Pei, Gaofeng Wang, Zuojiong Gong
Software Mentions: 1
Published: over 5 years ago

10.3389/fgene.2020.00881

SlGID1a Is a Putative Candidate Gene for qtph1.1, a Major-Effect Quantitative Trait Locus Controlling Tomato Plant Height
Cited by: 4
Author(s): Xiaolin Liu, Wencai Yang, Jing Wang, Ming Yang, Kai Wei, Xiaoyan Liu, Zhengkun Qiu, Tong van Giang, Xiaoxuan Wang, Yanmei Guo, Junming Li, Lei Liu, Jinshuai Shu, Yan Du, Zejun Huang
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-017-17751-x

The transcriptome of Mycobacterium tuberculosis in a lipid-rich dormancy model through RNAseq analysis
Cited by: 34
Author(s): Diana A. Aguilar-Ayala, Laurentijn Tilleman, Filip Van Nieuwerburgh, Dieter Deforce, Juan Carlos Palomino, Peter Vandamme, Jorge A. González-y-Merchand, Anandi Martin
Software Mentions: 1
Published: over 8 years ago

10.26508/lsa.201800036

Serine catabolism is essential to maintain mitochondrial respiration in mammalian cells
Cited by: 53
Author(s): Stéphanie Lucas, Guohua Chen, Siddhesh Aras, Jian Wang
Software Mentions: 1
Published: over 8 years ago

10.1186/s12967-018-1739-5

NovelmiRNA-25 inhibits AMPD2 in peripheral blood mononuclear cells of patients with systemic lupus erythematosus and represents a promising novel biomarker
Cited by: 26
Author(s): Gangqiang Guo, Huijing Wang, Xinyu Shi, Lele Ye, Kai Wu, Kuan‐Yu Lin, Sisi Ye, Baoqing Li, Huidi Zhang, Qiaoai Lin, Shuang Ye, Xiangyang Xue, Chaosheng Chen
Software Mentions: 1
Published: almost 8 years ago

10.26508/lsa.202000985

The AXL-PYK2-PKCα axis as a nexus of stemness circuits in TNBC
Cited by: 5
Author(s): Lohit Khera, Yaron Vinik, Flavio Maina, Sima Lev
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0199264

A CRISPR screen identifies MAPK7 as a target for combination with MEK inhibition in KRAS mutant NSCLC
Cited by: 15
Author(s): Nicholas Dompe, Christiaan Klijn, Sara A. Watson, Katherine R. Welker Leng, Jenna Port, Trinna Cuellar, Colin Watanabe, Benjamin Haley, Richard M. Neve, Marie Evangelista, David Stokoe
Software Mentions: 1
Published: about 8 years ago

10.1038/s41419-018-1110-z

Increasing G9a automethylation sensitizes B acute lymphoblastic leukemia cells to glucocorticoid-induced death
Cited by: 21
Author(s): Coralie Poulard, Estelle Baulu, Brian H. Lee, Miles A. Pufall, Michael R. Stallcup
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41598-017-18607-0

Differentially expressed microRNAs between cattleyak and yak testis
Cited by: 23
Author(s): Cheng Xu, Shan Wu, Wangsheng Zhao, TserangDonko Mipam, Jingbo Liu, Wenjing Liu, Chuanping Yi, Mujahid Ali Shah, Shumin Yu, Xin Cai
Software Mentions: 1
Published: over 8 years ago

10.1038/cddis.2016.91

The cytoskeleton adaptor protein ankyrin-1 is upregulated by p53 following DNA damage and alters cell migration
Cited by: 26
Author(s): Alan Hall, Wei-Ting Lu, Jack D. Godfrey, Alexey V. Antonov, Claudia Paicu, Simon Moxon, Tamás Dalmay, Ania Wilczynska, Patricia Müller, Martin Bushell
Software Mentions: 1
Published: over 10 years ago

10.3390/cancers13153812

A Yes-Associated Protein (YAP) and Insulin-Like Growth Factor 1 Receptor (IGF-1R) Signaling Loop Is Involved in Sorafenib Resistance in Hepatocellular Carcinoma
Cited by: 9
Author(s): Mai Huong Thi Ngo, Sue Wei Peng, Yung Che Kuo, Chun‐Yen Lin, Ming–Heng Wu, Chia Hsien Chuang, Cheng Xiang Kao, Han Yin Jeng, Gee Way Lin, Thai-Yen Ling, Te‐Sheng Chang, Yen Hua Huang
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-018-19200-9

Maternal whole blood cell miRNA-340 is elevated in gestational diabetes and inversely regulated by glucose and insulin
Cited by: 37
Author(s): Laura Stirm, Peter Huypens, Steffen Sass, Richa Batra, Louise Fritsche, Sara Y. Brucker, Harald Abele, Anita M. Hennige, Fabian J. Theis, Johannes Beckers, Martin Hrabé de Angelis, Andreas Fritsche, Hans‐Ulrich Häring, Harald Staiger
Software Mentions: 1
Published: over 8 years ago

10.3389/fgene.2019.00409

Dynamic Transcriptome Analysis Reveals Potential Long Non-coding RNAs Governing Postnatal Pineal Development in Pig
Cited by: 8
Author(s): Yalan Yang, Rong Zhou, Wentong Li, Ying Liu, Yanmin Zhang, Ai Hong, Hua Li, Kui Li
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-018-19837-6

Persistent activation of interlinked type 2 airway epithelial gene networks in sputum-derived cells from aeroallergen-sensitized symptomatic asthmatics
Cited by: 15
Author(s): Anya C. Jones, Niamh M. Troy, Elisha White, Elysia M. Hollams, Alexander M. Gout, Kak-Ming Ling, Anthony Kicic, Stephen M. Stick, Peter D. Sly, Patrick G. Holt, Graham L. Hall, Anthony Bosco
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-018-19954-2

Different milk diets have substantial effects on the jejunal mucosal immune system of pre-weaning calves, as demonstrated by whole transcriptome sequencing
Cited by: 18
Author(s): H.M. Hammon, D. Frieten, C. Gerbert, Christian Koch, G. Dusel, Rosemarie Weikard, Christa Kühn
Software Mentions: 1
Published: over 8 years ago

10.1038/s41419-021-03661-4

MCPIP1-mediated NFIC alternative splicing inhibits proliferation of triple-negative breast cancer via cyclin D1-Rb-E2F1 axis
Cited by: 21
Author(s): Fengxia Chen, Qingqing Wang, Xiaoyan Yu, Ningning Yang, Yuan Wang, Yongquan Zeng, Zhewen Zheng, Fuxiang Zhou, Youwen Zhou
Software Mentions: 1
Published: over 5 years ago

10.3389/fcimb.2017.00045

Colistin Resistance in Acinetobacter baumannii MDR-ZJ06 Revealed by a Multiomics Approach
Cited by: 30
Author(s): Xiaoting Hua, Lilin Liu, Youhong Fang, Qiucheng Shi, Xi Li, Qiong Chen, Kezhang Shi, Yan Jiang, Hua Zhou, Yunsong Yu
Software Mentions: 1
Published: over 9 years ago

10.7554/eLife.64250

Stretch-activated ion channels identified in the touch-sensitive structures of carnivorous Droseraceae plants
Cited by: 40
Author(s): Carl Procko, Swetha E. Murthy, William T Keenan, Seyed Ali Reza Mousavi, Tsegaye Dabi, Adam Coombs, Erik Procko, Lisa Baird, Ardem Patapoutian, Joanne Chory
Software Mentions: 1
Published: over 5 years ago

10.18632/oncotarget.17321

Inhibition of stress-inducible HSP70 impairs mitochondrial proteostasis and function
Cited by: 31
Author(s): Julia I-Ju Leu, Thibaut Barnoud, Gao Zhang, Tian Tian, Zhi Wei, Meenhard Herlyn, Maureen E. Murphy, Donna L. George
Software Mentions: 1
Published: over 9 years ago

10.1186/s13018-021-02508-0

Cornuside I promoted osteogenic differentiation of bone mesenchymal stem cells through PI3K/Akt signaling pathway
Cited by: 5
Author(s): Feng Gao, Shuhua Xia, Xiuhui Wang, Xiaoxiao Zhou, Jun Wang
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-018-21525-4

Molecular characterization of colorectal adenomas with and without malignancy reveals distinguishing genome, transcriptome and methylome alterations
Cited by: 35
Author(s): Brooke R. Druliner, Panwen Wang, Taejeong Bae, Saurabh Baheti, Seth W. Slettedahl, Douglas W. Mahoney, Nikolaos Vasmatzis, Hang Xu, Min‐Soo Kim, Matthew A. Bockol, Daniel R. O’Brien, Diane E. Grill, Nathaniel D. Warner, Miguel Munoz-Gomez, Kimberlee Kossick, Ruth A. Johnson, Mohamad Mouchli, Donna Felmlee-Devine, Jill Washechek-Aletto, Thomas C. Smyrk, Ann L. Oberg, Junwen Wang, Nicholas Chia, Alexej Abyzov, David A. Ahlquist, Lisa A. Boardman
Software Mentions: 1
Published: over 8 years ago

10.1038/s41419-020-2331-5

The nuclear gene rpl18 regulates erythroid maturation via JAK2-STAT3 signaling in zebrafish model of Diamond–Blackfan anemia
Cited by: 9
Author(s): Cheng Chen, Mengjia Lu, Shuo Lin, Wenzhi Qin
Software Mentions: 1
Published: over 6 years ago

10.1038/s41419-020-03107-3

ClC-3/SGK1 regulatory axis enhances the olaparib-induced antitumor effect in human stomach adenocarcinoma
Cited by: 12
Author(s): Zhuoyu Gu, Liping Wang, Xiaohan Yao, Long Qian, Kaping Lee, Jieyao Li, Dongli Yue, Shuman Yang, Yanfen Liu, Na Li, Yixin Li
Software Mentions: 1
Published: almost 6 years ago

10.1038/cddis.2015.392

Hemoglobinuria-related acute kidney injury is driven by intrarenal oxidative reactions triggering a heme toxicity response
Cited by: 96
Author(s): Jeremy Deuel, Christian A. Schaer, Felicitas S Boretti, Lennart Opitz, Inés García-Rubio, Jin Hyen Baek, Donat R. Spahn, Paul W. Buehler, Dominik J. Schaer
Software Mentions: 1
Published: over 10 years ago

10.1038/s41598-018-21371-4

Characterization of gene regulation and protein interaction networks for Matrin 3 encoding mutations linked to amyotrophic lateral sclerosis and myopathy
Cited by: 28
Author(s): María Carolina Gallego Iradi, Judy C. Triplett, James Thomas, Rachel Davila, Anthony M Crown, Hilda Brown, Jada Lewis, Maurice S. Swanson, Guilian Xu, Edgardo Rodríguez-Lebrón, David R. Borchelt
Software Mentions: 1
Published: over 8 years ago

10.1186/2049-3002-1-11

Respiratory complex I is essential to induce a Warburg profile in mitochondria-defective tumor cells
Cited by: 74
Author(s): Claudia Calabrese, Luisa Iommarini, Ivana Kurelac, Maria Antonietta Calvaruso, Mariantonietta Capristo, Pier‐Luigi Lollini, Patrizia Nanni, Christian Bergamini, Giordano Nicoletti, Carla De Giovanni, Anna Ghelli, Valentina Giorgio, Mariano Francesco Caratozzolo, Flaviana Marzano, Caterina Manzari, Christine M. Betts, Valerio Carelli, Claudio Ceccarelli, Marcella Attimonelli, Giovanni Romeo, Romana Fato, Michela Rugolo, Apollonia Tullo, Giuseppe Gasparre, Anna Maria Porcelli
Software Mentions: 1
Published: over 13 years ago

10.1186/s12967-018-1637-x

Molecular network-based identification of competing endogenous RNAs and mRNA signatures that predict survival in prostate cancer
Cited by: 36
Author(s): Ning Xu, Yupeng Wu, Hubin Yin, Xue-Yi Xue, Xin Gou
Software Mentions: 1
Published: almost 8 years ago

10.3390/cancers13153854

Quantitative Assessment and Prognostic Associations of the Immune Landscape in Ovarian Clear Cell Carcinoma
Cited by: 9
Author(s): Saira Khalique, Sarah H. Nash, David Mansfield, Julian Wampfler, Ayoma D. Attygale, Katherine Vroobel, Harriet Kemp, Richard Buus, Hannah Cottom, Ioannis Roxanis, Thomas R. Jones, Katharina von Loga, Dipa Begum, Naomi Guppy, Pradeep Ramagiri, Kerry Fenwick, Nik Matthews, Michael Hubank, Christopher J. Lord, Syed Haider, Alan Melcher, Susana Banerjee, Rachael Natrajan
Software Mentions: 1
Published: about 5 years ago

10.1186/s40170-021-00270-9

Targeting MYC-enhanced glycolysis for the treatment of small cell lung cancer
Cited by: 19
Author(s): Kasey R. Cargill, C. Allison Stewart, Elizabeth M. Park, Kavya Ramkumar, Robert J. Cardnell, Qi Wang, Lixia Diao, Ли Шен, You-Hong Fan, Wai Kin Chan, Philip L. Lorenzi, Trudy G. Oliver, Lauren A. Byers
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-018-23714-7

Vitamin C promotes apoptosis in breast cancer cells by increasing TRAIL expression
Cited by: 61
Author(s): David W. Sant, Sushmita Mustafi, Christopher B. Gustafson, Joshua Chen, Joyce M. Slingerland, Gaofeng Wang
Software Mentions: 1
Published: over 8 years ago

10.18632/oncotarget.17506

A five-long non-coding RNA signature to improve prognosis prediction of clear cell renal cell carcinoma
Cited by: 27
Author(s): Da Shi, Qinghua Qu, Qimeng Chang, Yilin Wang, Yan Gui, Dong Dong
Software Mentions: 1
Published: over 9 years ago

10.18632/oncotarget.18833

The molecular characterization of porcine egg precursor cells
Cited by: 10
Author(s): Te-Sha Tsai, Jacqueline L. Johnson, Yvonne A.R. White, Justin C. St. John
Software Mentions: 1
Published: about 9 years ago

10.1038/s41419-019-1791-y

Upregulation of SLAMF3 on human T cells is induced by palmitic acid through the STAT5-PI3K/Akt pathway and features the chronic inflammatory profiles of type 2 diabetes
Cited by: 16
Author(s): Tong Zhou, Guixia Wang, Yanan Lyu, Lei Wang, Siyao Zuo, Jun Zou, Lin Sun, Wenjie Zhao, Chang Shu, Yong‐Guang Yang, Zheng Hu
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-018-24284-4

Measurement of metabolite variations and analysis of related gene expression in Chinese liquorice (Glycyrrhiza uralensis) plants under UV-B irradiation
Cited by: 33
Author(s): Xiao Zhang, Xiaoli Ding, Yaxi Ji, Shouchuang Wang, Yingying Chen, Jie Luo, Yingbai Shen, Peng Li
Software Mentions: 1
Published: over 8 years ago

10.1038/s41419-021-03510-4

Suppression of steroid 5α-reductase type I promotes cellular apoptosis and autophagy via PI3K/Akt/mTOR pathway in multiple myeloma
Cited by: 12
Author(s): Renjie Dou, Jinjun Qian, Wei Wu, Yanxin Zhang, Ye Yuan, Mengjie Guo, Rongfang Wei, Shu Yang, Artur Jurczyszyn, Siegfried Janz, Meral Beksaç, Chunyan Gu, Ye Yang
Software Mentions: 1
Published: over 5 years ago

10.1002/cam4.2099

Identification of competitive endogenous RNAs network in breast cancer
Cited by: 13
Author(s): Xiaojin Wang, Jiahui Wan, Zhanxiang Xu, Jiangbo Shu, Lin Ji, Yutian Liu, Shuwen Zhai, Rongjun Cui
Software Mentions: 1
Published: over 7 years ago

10.18632/oncotarget.18234

Cell lines generated from a chronic lymphocytic leukemia mouse model exhibit constitutive Btk and Akt signaling
Cited by: 17
Author(s): Simar Pal Singh, Saravanan Y. Pillai, Marjolein J. W. de Bruijn, Ralph Stadhouders, Odilia B. J. Corneth, Henk-Jan van den Ham, Alice F. Muggen, Wilfred F. J. van IJcken, Erik Slinger, Annemieke Kuil, Marcel Spaargaren, Arnon P. Kater, Anton W. Langerak
Software Mentions: 1
Published: over 9 years ago

10.1002/cam4.432

<scp>HER2</scp> as a target in invasive urothelial carcinoma
Cited by: 35
Author(s): Joaquim Bellmunt, Lillian Werner, Aristotle Bamias, André P. Fay, Rachel S. Park, Markus Riester, Shamini Selvarajah, Justine A. Barletta, David M. Berman, Silvia de Muga, Marta Salido, Enrique Gallardo, Federico Rojo, Elizabeth A. Guancial, Richard Bambury, Stephanie A. Mullane, Toni K. Choueiri, Massimo Loda, Edward C. Stack, Jonathan E. Rosenberg
Software Mentions: 1
Published: over 11 years ago

10.1038/s41419-019-1887-4

Direct neuronal reprogramming of olfactory ensheathing cells for CNS repair
Cited by: 15
Author(s): Xiaoyan Sun, Zijian Tan, Xu Huang, Xueyan Cheng, Yihang Yuan, Shangyao Qin, Dan Wang, Xiangyou Hu, Yakun Gu, Wen-Jing Qian, Zhongfeng Wang, Cheng He, Zhida Su
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0256875

Transcriptome characterization and expression profile of Coix lacryma-jobi L. in response to drought
Cited by: 9
Author(s): Guidong Miao, Yan Qin, Jihua Guo, Qingxia Zhang, Yingying Bao
Software Mentions: 1
Published: about 5 years ago

10.3389/fgene.2021.607238

The TP53-Related Signature Predicts Immune Cell Infiltration, Therapeutic Response, and Prognosis in Patients With Esophageal Carcinoma
Cited by: 7
Author(s): Hongpan Zhang, Zheng Huang, Yangguang Song, Zhihao Yang, Qi Shi, Kaige Wang, Zhiyu Zhang, Zheng Lv, Xiaobin Cui, Feng Li
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-020-64288-7

Transcriptome profile analysis of two Vicia faba cultivars with contrasting salinity tolerance during seed germination
Cited by: 19
Author(s): Fangwen Yang, Hongwei Chen, Changyan Liu, Li Li, Liangjun Liu, Xuesong Han, Zhengjie Wan, Aihua Sha
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0149067

Experimental Approach Reveals the Role of alx1 in the Evolution of the Echinoderm Larval Skeleton
Cited by: 27
Author(s): Hisao Koga, Haruka Fujitani, Yoshiaki Morino, Norio Miyamoto, Jun Tsuchimoto, Tomoko Shibata, Masahiro Nozawa, Shuji Shigenobu, Atsushi Ogura, Kazunori Tachibana, Masato Kiyomoto, Shonan Amemiya, Hiroshi Wada
Software Mentions: 1
Published: over 10 years ago

10.3389/fgene.2020.617872

Transcriptome Analyses Identify an RNA Binding Protein Related Prognostic Model for Clear Cell Renal Cell Carcinoma
Cited by: 8
Author(s): Yue Wu, Wa Xian, Huan Feng, Bintao Hu, Bo Liu, Yang Luan, Yajun Ruan, Xiaohui Liu, Zhuo Liu, Shaogang Wang, Jihong Liu, Tao Wang
Software Mentions: 1
Published: over 5 years ago

10.1038/s41419-021-04126-4

Non-apoptotic function of caspase-8 confers prostate cancer enzalutamide resistance via NF-κB activation
Cited by: 6
Author(s): Jia Xia, Jiahui Zhang, Liangzhe Wang, Hailong Liu, Jie Wang, Junyan Liu, Zhao‐Qian Liu, Yingke Zhu, Yingjie Xu, Wen Yang, Yu Yan
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0039914

A Retinoblastoma Orthologue Is a Major Regulator of S-Phase, Mitotic, and Developmental Gene Expression in Dictyostelium
Cited by: 11
Author(s): Kimchi Strasser, Gareth Bloomfield, Asa MacWilliams, Adriano Ceccarelli, Harry K. MacWilliams, Adrian Tsang
Software Mentions: 1
Published: about 14 years ago

10.3389/fgene.2021.667877

Leveraging Methylation Alterations to Discover Potential Causal Genes Associated With the Survival Risk of Cervical Cancer in TCGA Through a Two-Stage Inference Approach
Cited by: 7
Author(s): Jinhui Zhang, Haojie Lu, Shuo Zhang, Ting Wang, Huashuo Zhao, Fengjun Guan, Ping Zeng
Software Mentions: 1
Published: over 5 years ago

10.3389/fgene.2021.635599

Comparative Small RNA Profiling and Functional Exploration on Wheat With High- and Low-Cadmium Accumulation
Cited by: 6
Author(s): Yuqing Liu, Xudong Wang, Leyi Yuan, Yuxiang Liu, Tong Shen, Yunhua Zhang
Software Mentions: 1
Published: over 5 years ago

10.3389/fgene.2021.698983

Comparative Transcriptomic Analysis Reveals the Immunosuppressive Targets of Mesalazine in Dextran Sulfate Sodium-Induced Ulcerative Colitis
Cited by: 1
Author(s): Rong Li, Lin Cheng, Qi Wang, Liming Zhou
Software Mentions: 1
Published: about 5 years ago

10.1038/s41419-018-1025-8

IGF1R upregulation confers resistance to isoform-specific inhibitors of PI3K in PIK3CA-driven ovarian cancer
Cited by: 30
Author(s): Jonathan Zorea, Manu Prasad, Limor Cohen, Nan Li, Roman Schefzik, Susmita Ghosh, Barak Rotblat, Benedikt Brors, Moshe Elkabets
Software Mentions: 1
Published: almost 8 years ago

10.1186/s12870-020-02745-1

Under fire-simultaneous volatilome and transcriptome analysis unravels fine-scale responses of tansy chemotypes to dual herbivore attack
Cited by: 11
Author(s): Mary V. Clancy, Georg Haberer, Werner Jud, Bishu Niederbacher, Simon Niederbacher, Matthias Senft, Sharon E. Zytynska, Wolfgang W. Weisser, Jörg‐Peter Schnitzler
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-020-64022-3

Transcriptome profiling reveals insertional mutagenesis suppressed the expression of candidate pathogenicity genes in honeybee fungal pathogen, Ascosphaera apis
Cited by: 3
Author(s): Awraris Getachew, Tessema Aynalem Abejew, Jiangli Wu, Jin Xu, Yu Hou, Jian Tan, Peng-Jie Wu, Yan Tu, Weipeng Kang, Zheng Wang, Shufa Xu
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0118002

LSD1 Overexpression Is Associated with Poor Prognosis in Basal-Like Breast Cancer, and Sensitivity to PARP Inhibition
Cited by: 61
Author(s): Satoi Nagasawa, Anna S. Sedukhina, Yuko Nakagawa, Ichiro Maeda, Manabu Kubota, Shigeko Ohnuma, Koichiro Tsugawa, Tomohiko Ohta, Marta Roche-Molina, Juan A. Bernal, A.J. Narvaez, Anand D. Jeyasekharan, Ko Sato
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0110548

In-Depth Transcriptome Analysis of the Red Swamp Crayfish Procambarus clarkii
Cited by: 61
Author(s): Huangxuan Shen, Yacheng Hu, Yuanchao Ma, Xin Zhou, Zenghong Xu, Shui Yu, Chunyan Li, Peng Xu, Xin Sun
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0239617

Comparative transcriptome analysis reveals candidate genes related to cadmium accumulation and tolerance in two almond mushroom (Agaricus brasiliensis) strains with contrasting cadmium tolerance
Cited by: 3
Author(s): Penghu Liu, Zaixing Huang, Xuhui Luo, Hua Cai, Weng Bo-qi, Yixiang Wang, Li‐Song Chen
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0137726

Social Regulation of Gene Expression in Threespine Sticklebacks
Cited by: 23
Author(s): Anna K. Greenwood, Catherine L. Peichel
Software Mentions: 1
Published: almost 11 years ago

10.7554/eLife.28415

Single-cell transcriptome analysis of avian neural crest migration reveals signatures of invasion and molecular transitions
Cited by: 54
Author(s): Jason A. Morrison, Rebecca McLennan, Lauren A. Wolfe, Madelaine Gogol, Samuel R. Meier, Mary Cathleen McKinney, Jessica M. Teddy, Laura Holmes, Craig L. Semerad, Andrew Box, Hua Li, Kathryn Hall, Anoja Perera, Paul M. Kulesa
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0130885

Transcriptome Profiling of Tomato Fruit Development Reveals Transcription Factors Associated with Ascorbic Acid, Carotenoid and Flavonoid Biosynthesis
Cited by: 65
Author(s): Jie Ye, Tixu Hu, Congmei Yang, Hanxia Li, Mingze Yang, Raina Ijaz, Zhibiao Ye, Yuyang Zhang
Software Mentions: 1
Published: about 11 years ago

10.1186/s12870-015-0694-z

Physiological and transcriptional analyses of developmental stages along sugarcane leaf
Cited by: 48
Author(s): Lúcia Mattiello, Diego Mauricio Riaño-Pachón, Marina C. M. Martins, Larissa Prado da Cruz, D. Bassi, Paulo Eduardo Ribeiro Marchiori, Rafael Vasconcelos Ribeiro, Mônica Teresa Veneziano Labate, Carlos Alberto Labate, Marcelo Menossi
Software Mentions: 1
Published: almost 11 years ago

10.3389/fimmu.2021.722500

Transcriptional Changes in Pulmonary Phagocyte Subsets Dictate the Outcome Following Interaction With The Fungal Pathogen Cryptococcus neoformans
Cited by: 4
Author(s): Ashlee Hawkins, Brenden F. Determann, Benjamin N. Nelson, Karen L. Wozniak
Software Mentions: 1
Published: almost 5 years ago

10.7554/eLife.50346

Disruption of entire Cables2 locus leads to embryonic lethality by diminished Rps21 gene expression and enhanced p53 pathway
Cited by: 2
Author(s): Tra Thi Huong Dinh, Hiroyoshi Iseki, Seiya Mizuno, Saori Iijima-Mizuno, Yoko Tanimoto, Yoko Daitoku, Kayoko Kato, Yuko Hamada, Ammar Shaker Hamed Hasan, Hayate Suzuki, Katsuyuki Murata, Masafumi Muratani, Masatsugu Ema, Jun-Dal Kim, Junji Ishida, Akiyoshi Fukamizu, Mitsuyasu Kato, Satoru Takahashi, Ken‐ichi Yagami, Valerie Wilson, Ruth M. Arkell, Fumihiro Sugiyama
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-020-64890-9

Transcriptomic evidence that insulin signalling pathway regulates the ageing of subterranean termite castes
Cited by: 13
Author(s): Haroon, Xiaoming Ma, Yuxin Li, Hongxin Zhang, Qing Liu, Xiaoqing Su, Lianxi Xing
Software Mentions: 1
Published: over 6 years ago

10.3389/fimmu.2020.01064

Different Exosomal microRNA Profile in Aquaporin-4 Antibody Positive Neuromyelitis Optica Spectrum Disorders
Cited by: 7
Author(s): Chen Chen, Yunting Wu, Miaochang Li, Chun-Ping Chu, Yipeng Zhao, Xiaobo Sun, Yuge Wang, Chunxin Liu, Haotian Wu, Xiaonan Zhong, Allan G. Kermode, Lisheng Peng
Software Mentions: 1
Published: over 6 years ago

10.18632/oncotarget.19532

Integration of genomic, transcriptomic and functional profiles of aggressive osteosarcomas across multiple species
Cited by: 12
Author(s): Lara E. Davis, Sophia Jeng, Matthew N. Svalina, Elaine Huang, Janét Pittsenbarger, Emma L. Cantor, Noah Berlow, Bernard Séguin, Atiya Mansoor, Shannon K. McWeeney, Charles Keller
Software Mentions: 1
Published: about 9 years ago

10.3389/fimmu.2020.02191

Human Chondrocyte Activation by Toxins From Premolis semirufa, an Amazon Rainforest Moth Caterpillar: Identifying an Osteoarthritis Signature
Cited by: 4
Author(s): Isadora Maria Villas-Boas, Giselle Pidde, Flávio Lichtenstein, Ana Tung Ching Ching, Inácio L.M. Junqueira-de-Azevedo, Carlos DeOcesano-Pereira, Carlos Eduardo Madureira Trufen, Ana Marisa Chudzinski‐Tavassi, Kátia L.P. Morais, Denise V. Tambourgi
Software Mentions: 1
Published: almost 6 years ago

10.3389/fgene.2020.00273

HSD17B4, ACAA1, and PXMP4 in Peroxisome Pathway Are Down-Regulated and Have Clinical Significance in Non-small Cell Lung Cancer
Cited by: 12
Author(s): Xiuzhi Zhang, Hongmei Yang, Jinzhong Zhang, Fenglan Gao, Liping Dai
Software Mentions: 1
Published: over 6 years ago

10.3389/fimmu.2021.703632

A Biological Circuit Involving Mef2c, Mef2d, and Hdac9 Controls the Immunosuppressive Functions of CD4+Foxp3+ T-Regulatory Cells
Cited by: 4
Author(s): Eros Di Giorgio, Liqing Wang, Yan Xiong, Lanette M Christensen, Tatiana Akimova, Rongxiang Han, Arabinda Samanta, Matteo Trevisanut, Claudio Brancolini, Ulf H. Beier, Wayne W. Hancock
Software Mentions: 1
Published: about 5 years ago

10.3389/fimmu.2021.688294

Macrophage Polarization Modulated by Porcine Circovirus Type 2 Facilitates Bacterial Coinfection
Cited by: 6
Author(s): Wen Zhang, Zhendong Fu, Hongyan Yin, Qin Han, Wenhui Fan, Fangkun Wang, Yue Shang
Software Mentions: 1
Published: about 5 years ago

10.3390/cancers12020339

TGF-Beta-Activated Cancer-Associated Fibroblasts Limit Cetuximab Efficacy in Preclinical Models of Head and Neck Cancer
Cited by: 37
Author(s): Ksenia M. Yegodayev, Ofra Novoplansky, Artemiy Golden, Manu Prasad, Liron Levin, Sankar Jagadeeshan, Jonathan Zorea, Orr Dimitstein, Ben‐Zion Joshua, Limor Cohen, Ekaterina Khrameeva, Moshe Elkabets
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-020-65536-6

Opposite Roles of the JMJD1A Interaction Partners MDFI and MDFIC in Colorectal Cancer
Cited by: 16
Author(s): Shushan Yuan, Yongming Li, Sangphil Oh, Bin Zhang, Willard M. Freeman, Sook Shin, Ralf Janknecht
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0198221

AmpliSeq transcriptome analysis of human alveolar and monocyte-derived macrophages over time in response to Mycobacterium tuberculosis infection
Cited by: 34
Author(s): Audrey C. Papp, Abul K. Azad, Maciej Pietrzak, Amanda Williams, Samuel K. Handelman, Robert P. Igo, Catherine M. Stein, Katherine E. Hartmann, Larry S. Schlesinger, Wolfgang Sadée
Software Mentions: 1
Published: over 8 years ago

10.1186/s12967-021-02857-8

Identifying the functions of two biomarkers in human oligodendrocyte progenitor cell development
Cited by: 4
Author(s): Huixia Zhou, HE Ya, Zhaoyan Wang, Qian Wang, Caiyan Hu, Xiaohua Wang, Shan Lu, Ké Li, Ye Yang, Zuo Luan
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-020-66469-w

Transcriptomic study in women with trisomy 21 identifies a possible role of the GTPases of the immunity-associated proteins (GIMAP) in the protection of breast cancer
Cited by: 13
Author(s): André Mégarbané, David Piquemal, Anne-Sophie Rebillat, Samantha Stora, Fabien Pierrat, Roman Bruno, Florian Noguier, Clotilde Mircher, Aimé Ravel, Marie Vilaire-Meunier, Sophie Durand, Gérard Lefranc
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0219976

Comparative transcriptome analysis of translucent flesh disorder in mangosteen (Garcinia mangostana L.) fruits in response to different water regimes
Cited by: 8
Author(s): Deden Derajat Matra, Toshinori Kozaki, Kazuo Ishii, Roedhy Poerwanto, Eiichi Inoue
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-020-66500-0

Transcriptome analyses suggest that changes in fungal endophyte lifestyle could be involved in grapevine bud necrosis
Cited by: 13
Author(s): Thales Henrique Cherubino Ribeiro, Christiane Noronha Fernandes-Brum, C. R. de Souza, Frédérico Alcântara Novelli Dias, Osmar de Almeida-Junior, Murilo de Albuquerque Regina, Kellen Kauanne Pimenta de Oliveira, Gabriel Lasmar dos Reis, Larissa Maia de Oliveira, Fernanda de Paula Fernandes, Laurent Torregrosa, Jorge Teodoro de Souza, Antônio Chalfun-Júnior
Software Mentions: 1
Published: about 6 years ago

10.1186/s12870-020-2265-1

Transcriptome profiling of Fagopyrum tataricum leaves in response to lead stress
Cited by: 26
Author(s): Lei Wang, Bo Zheng, Yahong Yuan, Quanxi Xu, Peng Chen
Software Mentions: 1
Published: over 6 years ago

Projects: bioconductor: edgeR

Science Score: 100/100

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Papers Mentioning edgeR 6,568