bioconductor: edgeR | Projects | Ecosyste.ms: Papers

10.3389/fmicb.2019.01873

Hydrogen Oxidation Influences Glycogen Accumulation in a Verrucomicrobial Methanotroph
Cited by: 12
Author(s): Carlo R. Carere, Ben McDonald, Hanna Peach, Chris Greening, Daniel J. Gapes, Christophe Collet, Matthew B. Stott
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2014.00430

Wolbachia is not all about sex: male-feminizing Wolbachia alters the leafhopper Zyginidia pullula transcriptome in a mainly sex-independent manner
Cited by: 12
Author(s): Hosseinali Asgharian, Peter L. Chang, Peter John Mazzoglio, Ilaria Negri
Software Mentions: 1
Published: about 10 years ago

10.3389/fmicb.2018.01765

Comparative Transcriptomic Analysis of Streptococcus thermophilus TH1436 and TH1477 Showing Different Capability in the Use of Galactose
Cited by: 18
Author(s): Sabrina Giaretta, Laura Treu, Veronica Vendramin, Vinícius da Silva Duarte, Armin Tarrah, Stefano Campanaro, Viviana Corich
Software Mentions: 1
Published: over 6 years ago

10.3389/fmicb.2018.00859

Comparative Metatranscriptomics of Wheat Rhizosphere Microbiomes in Disease Suppressive and Non-suppressive Soils for Rhizoctonia solani AG8
Cited by: 62
Author(s): Helen L. Hayden, Keith W. Savin, Jenny Wadeson, Vadakattu V. S. R. Gupta, Pauline M. Mele
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms17010012

Identification of the Avian Pasteurella multocida phoP Gene and Evaluation of the Effects of phoP Deletion on Virulence and Immunogenicity
Cited by: 16
Author(s): Kangpeng Xiao, Qing Liu, Xueyan Liu, Yunlong Hu, Xinxin Zhao, Qingke Kong
Software Mentions: 1
Published: almost 9 years ago

10.3389/fmicb.2018.01643

Long-Term Land Use Affects Phosphorus Speciation and the Composition of Phosphorus Cycling Genes in Agricultural Soils
Cited by: 54
Author(s): Liu Jin, Barbara J. Cade-Menun, Jianjun Yang, Yongfeng Hu, Corey W. Liu, Julien Tremblay, Kerry LaForge, Michael P. Schellenberg, Chantal Hamel, Luke D. Bainard
Software Mentions: 1
Published: over 6 years ago

10.3389/fmicb.2019.00150

Deciphering the Antibacterial Mode of Action of Alpha-Mangostin on Staphylococcus epidermidis RP62A Through an Integrated Transcriptomic and Proteomic Approach
Cited by: 35
Author(s): Murugesan Sivaranjani, Katarzyna Leskinen, Chairmandurai Aravindraja, Päivi Saavalainen, Shunmugiah Karutha Pandian, Mikael Skurnik, Arumugam Veera Ravi
Software Mentions: 1
Published: almost 6 years ago

10.3389/fmicb.2021.615893

Transcriptome Profiling Reveals a Novel Mechanism of Antiviral Immunity Upon Sacbrood Virus Infection in Honey Bee Larvae (Apis cerana)
Cited by: 10
Author(s): Yanjun Guo, Zhengyi Zhang, Mingsheng Zhuang, Liuhao Wang, Kai Li, Jun Yao, Huipeng Yang, Jiaxing Huang, Ya Hao, Ying Fan, Hira Mannan, Jie Wu, Yanping Chen, Jilian Li
Software Mentions: 1
Published: over 3 years ago

10.3389/fmicb.2018.00356

Comparative Genomics of the Baltic Sea Toxic Cyanobacteria Nodularia spumigena UHCC 0039 and Its Response to Varying Salinity
Cited by: 12
Author(s): Jonna Teikari, Songjun Hou, Matti Wahlsten, Wolfgang R. Hess, Kaarina Sivonen
Software Mentions: 1
Published: over 6 years ago

10.3389/fmicb.2017.00180

Critical Issues in Mycobiota Analysis
Cited by: 63
Author(s): Bettina Halwachs, Nandhitha Madhusudhan, Robert Krause, R. Henrik Nilsson, Christine Moissl-Eichinger, Christoph Högenauer, Gerhard G. Thallinger, Gregor Gorkiewicz
Software Mentions: 1
Published: almost 8 years ago

10.3389/fmicb.2016.01545

New Genes Involved in Osmotic Stress Tolerance in Saccharomyces cerevisiae
Cited by: 18
Author(s): Ramón González, Pilar Morales, Jordi Tronchoni, Gustavo Cordero-Bueso, Enrico Vaudano, Manuel Quirós, Maïté Novo, Rafael Torres‐Pérez, Eva Valero
Software Mentions: 1
Published: about 8 years ago

10.3390/ijms17030283

Physiological Investigation and Transcriptome Analysis of Polyethylene Glycol (PEG)-Induced Dehydration Stress in Cassava
Cited by: 73
Author(s): Lili Fu, Zehong Ding, Bingying Han, Wei Hu, Yajun Li, Jiaming Zhang
Software Mentions: 1
Published: over 8 years ago

10.3389/fmicb.2016.00078

Integrated Translatomics with Proteomics to Identify Novel Iron–Transporting Proteins in Streptococcus pneumoniae
Cited by: 31
Author(s): Xiao-Yan Yang, Kui He, Gaofei Du, Xiaohui Wu, Guangchuang Yu, Yunlong Pan, Gong Zhang, Xia Sun, Qing‐Yu He
Software Mentions: 1
Published: almost 9 years ago

10.3389/fmicb.2021.651744

Growth on Formic Acid Is Dependent on Intracellular pH Homeostasis for the Thermoacidophilic Methanotroph Methylacidiphilum sp. RTK17.1
Cited by: 11
Author(s): Carlo R. Carere, Kiel Hards, Kathryn Wigley, Luke Carman, Karen M. Houghton, Gregory M. Cook, Matthew B. Stott
Software Mentions: 1
Published: over 3 years ago

10.3389/fmicb.2019.02452

Single-Cell RNA Sequencing of Plant-Associated Bacterial Communities
Cited by: 10
Author(s): Qin Ma, Heike Bücking, Jose L. Gonzalez-Hernandez, Senthil Subramanian
Software Mentions: 1
Published: about 5 years ago

10.3389/fmicb.2017.01266

Long-Term Rock Phosphate Fertilization Impacts the Microbial Communities of Maize Rhizosphere
Cited by: 54
Author(s): Ubiana C. Silva, Julliane Dutra Medeiros, Laura Hora Rios Leite, Daniel Morais, Sara Cuadros-Orellana, Carlos A. S. Oliveira, U. G. de P. Lana, E. A. Gomes, Vera Lúcia dos Santos
Software Mentions: 1
Published: over 7 years ago

10.3389/fmicb.2016.00880

Genetic Manipulation of Competition for Nitrate between Heterotrophic Bacteria and Diatoms
Cited by: 41
Author(s): Rachel E. Diner, Sarah M. Schwenck, John P. McCrow, Hong Zheng, Andrew E. Allen
Software Mentions: 1
Published: over 8 years ago

10.3389/fmicb.2018.00299

Temporal Expression Dynamics of Plant Biomass-Degrading Enzymes by a Synthetic Bacterial Consortium Growing on Sugarcane Bagasse
Cited by: 22
Author(s): Diego Javier Jiménez, Maryam Chaib De Mares, Joana Falcão Salles
Software Mentions: 1
Published: over 6 years ago

10.3389/fmicb.2019.00848

Adaptation of the Human Gut Microbiota Metabolic Network During the First Year After Birth
Cited by: 11
Author(s): Alvaro Fuertes, Sergio Pérez-Burillo, Iñigo Apaolaza, Yvonne Vallès, M. Pilar Francino, José Ángel Rufián-Henares, Francisco J. Planes
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms17050689

Genome-Wide Transcriptome Profiling of Mycobacterium smegmatis MC2 155 Cultivated in Minimal Media Supplemented with Cholesterol, Androstenedione or Glycerol
Cited by: 10
Author(s): Qun Li, Fanglan Ge, Yunya Tan, Guangxiang Zhang, Wei Li
Software Mentions: 1
Published: over 8 years ago

10.3389/fmicb.2016.01279

Demethylase Inhibitor Fungicide Resistance in Pyrenophora teres f. sp. teres Associated with Target Site Modification and Inducible Overexpression of Cyp51
Cited by: 55
Author(s): Wesley J. Mair, Wei‐Wei Deng, Jonathan Mullins, Samuel West, Penghao Wang, Naghmeh Besharat, Simon R. Ellwood, Richard P. Oliver, Francisco J. López-Ruiz
Software Mentions: 1
Published: over 8 years ago

10.3389/fmicb.2018.02569

Organic Particles: Heterogeneous Hubs for Microbial Interactions in Aquatic Ecosystems
Cited by: 39
Author(s): Mina Bižić-Ionescu, Danny Ionescu, Hans‐Peter Grossart
Software Mentions: 1
Published: about 6 years ago

10.3389/fmicb.2015.00631

Changes in gene expression of Prymnesium parvum induced by nitrogen and phosphorus limitation
Cited by: 36
Author(s): Zhenfeng Liu, Amy E. Koid, Ramón Terrado, Victoria Campbell, David A. Caron, Karla B. Heidelberg
Software Mentions: 1
Published: over 9 years ago

10.3389/fmicb.2018.00189

Functional Genomics and Phylogenetic Evidence Suggest Genus-Wide Cobalamin Production by the Globally Distributed Marine Nitrogen Fixer Trichodesmium
Cited by: 10
Author(s): Nathan G. Walworth, Michael D. Lee, Christopher Suffridge, Pingping Qu, Fei-Xue Fu, Mak A. Saito, Eric A. Webb, Sergio A. Sañudo‐Wilhelmy, David A. Hutchins
Software Mentions: 1
Published: almost 7 years ago

10.3390/ijms17050690

Optimizing Hybrid de Novo Transcriptome Assembly and Extending Genomic Resources for Giant Freshwater Prawns (Macrobrachium rosenbergii): The Identification of Genes and Markers Associated with Reproduction
Cited by: 19
Author(s): Hyungtaek Jung, Byung-Ha Yoon, Woo Jin Kim, Dong-Wook Kim, David A. Hurwood, Russell E. Lyons, Krishna R. Salin, Heui‐Soo Kim, Ilseon Baek, Vincent Chand, Peter B. Mather
Software Mentions: 1
Published: over 8 years ago

10.3389/fmicb.2020.539702

Calcineurin Regulates Conidiation, Chlamydospore Formation and Virulence in Fusarium oxysporum f. sp. lycopersici
Cited by: 10
Author(s): Yi-Hsuan Hou, Li-Hang Hsu, Hsuan-Fu Wang, Yu-Hsin Lai, Ying-Lien Chen
Software Mentions: 1
Published: about 4 years ago

10.3390/ijms17101612

Elevated Expression of Calpain-4 Predicts Poor Prognosis in Patients with Gastric Cancer after Gastrectomy
Cited by: 5
Author(s): Peike Peng, Lingqiang Min, Shushu Song, Junjie Zhao, Lili Li, Caiting Yang, Miaomiao Shao, Mingming Zhang, Hao Wu, Jie Zhang, Can Li, Xuefei Wang, Hongshan Wang, Jing Qin, Yuanyuan Ruan, Jianxin Gu
Software Mentions: 1
Published: about 8 years ago

10.1155/2021/9917060

Increased EHHADH Expression Predicting Poor Survival of Osteosarcoma by Integrating Weighted Gene Coexpression Network Analysis and Experimental Validation
Cited by: 1
Author(s): Juncheng Cui, Guoliang Yi, Jinxin Li, Yangtao Li, Dongyang Qian
Software Mentions: 1
Published: over 3 years ago

10.3389/fmicb.2019.01622

Molecular Signatures of Non-typeable Haemophilus influenzae Lung Adaptation in Pediatric Chronic Lung Disease
Cited by: 13
Author(s): Ammar Aziz, Derek S. Sarovich, Elizabeth Nosworthy, Jemima Beissbarth, Anne B. Chang, Heidi Smith‐Vaughan, Erin P. Price, Tegan M. Harris
Software Mentions: 1
Published: over 5 years ago

10.1186/s13059-019-1830-0

Dissociation of solid tumor tissues with cold active protease for single-cell RNA-seq minimizes conserved collagenase-associated stress responses
Cited by: 152
Author(s): Ciara H. O’Flanagan, Kieran R Campbell, Allen W. Zhang, Farhia Kabeer, Jamie Lim, Justina Biele, Peter Eirew, Daniel Lai, Andrew McPherson, Esther Kong, Cherie Bates, Kelly Borkowski, Matt Wiens, Brittany Hewitson, James Hopkins, Jenifer Pham, Nicholas Ceglia, Richard A. Moore, Andrew J. Mungall, Jessica N. McAlpine, Sohrab P. Shah, Samuel Aparicio
Software Mentions: 1
Published: about 5 years ago

10.3389/fmicb.2018.00752

Infection by a Giant Virus (AaV) Induces Widespread Physiological Reprogramming in Aureococcus anophagefferens CCMP1984 – A Harmful Bloom Algae
Cited by: 30
Author(s): Mohammad Moniruzzaman, Eric R. Gann, Steven W. Wilhelm
Software Mentions: 1
Published: over 6 years ago

10.3389/fmicb.2016.01465

Exploratory Investigation of Bacteroides fragilis Transcriptional Response during In vitro Exposure to Subinhibitory Concentration of Metronidazole
Cited by: 7
Author(s): Michele Cristine Ribeiro de Freitas, Juliana Alves Resende, Alessandra Barbosa Ferreira-Machado, Guadalupe del Rosario Quispe Saji, Ana Tereza Ribeiro de Vasconcelos, Vânia Lúcia da Silva, Marisa Fabiana Nicolás, Cláudio Galuppo Diniz
Software Mentions: 1
Published: about 8 years ago

10.3389/fmicb.2018.02308

Microbial Community and Metabolic Activity in Thiocyanate Degrading Low Temperature Microbial Fuel Cells
Cited by: 7
Author(s): Gaofeng Ni, Sebastian Canizales, Elias Broman, Domenico Simone, Viraja R. Palwai, Daniel Lundin, Margarita López-Fernández, Tom Sleutels, Mark Dopson
Software Mentions: 1
Published: about 6 years ago

10.3389/fmicb.2020.01096

ClpV3 of the H3-Type VI Secretion System (H3-T6SS) Affects Multiple Virulence Factors in Pseudomonas aeruginosa
Cited by: 14
Author(s): Yanqi Li, Lin Chen, Pansong Zhang, Anjali Y. Bhagirath, Kangmin Duan
Software Mentions: 1
Published: over 4 years ago

10.3390/ijms17111951

Transcriptome Analysis of mRNA and miRNA in Somatic Embryos of Larix leptolepis Subjected to Hydrogen Treatment
Cited by: 15
Author(s): Yali Liu, Sang‐Mi Han, Xiangming Ding, Xinmin Li, Lifeng Zhang, Wanfeng Li, Haiyan Xu, Zhexin Li, Qi Liu
Software Mentions: 1
Published: almost 8 years ago

10.3389/fmicb.2019.02640

Diversity Distribution and Assembly Mechanisms of Planktonic and Benthic Microeukaryote Communities in Intertidal Zones of Southeast Fujian, China
Cited by: 20
Author(s): Jie Kong, Ying Wang, Alan Warren, Bangqin Huang, Ping Sun
Software Mentions: 1
Published: about 5 years ago

10.3390/ijms21176017

Integrated Analysis of Small RNA, Transcriptome, and Degradome Sequencing Reveals the Water-Deficit and Heat Stress Response Network in Durum Wheat
Cited by: 25
Author(s): Haipei Liu, Amanda J. Able, Jason A. Able
Software Mentions: 1
Published: over 4 years ago

10.3389/fmicb.2018.03266

Multi-Method Characterization of the Human Circulating Microbiome
Cited by: 103
Author(s): Emma Whittle, Martin O. Leonard, Rebecca D Harrison, Timothy W. Gant, Daniel Tonge
Software Mentions: 1
Published: almost 6 years ago

10.3389/fmicb.2015.01262

Identification of Genetic Modules Mediating the Jekyll and Hyde Interaction of Dinoroseobacter shibae with the Dinoflagellate Prorocentrum minimum
Cited by: 42
Author(s): Hui Wang, Jürgen Tomasch, Victoria Michael, Sabin Bhuju, Michael Jarek, Jörn Petersen, Irene Wagner‐Döbler
Software Mentions: 1
Published: about 9 years ago

10.3389/fimmu.2020.594243

Effects of In Vivo Gluten Challenge on PBMC Gene Expression Profiles in Diet Treated Celiac Disease
Cited by: 4
Author(s): Dawit A. Yohannes, Andrea de Kauwe, Katri Kaukinen, Kalle Kurppa, Markku Mäki, Robert P. Anderson, Sten Linnarsson, Dario Greco, Päivi Saavalainen
Software Mentions: 1
Published: almost 4 years ago

10.3389/fimmu.2019.02394

IFN-Lambda 3 Mediates Antiviral Protection Against Porcine Epidemic Diarrhea Virus by Inducing a Distinct Antiviral Transcript Profile in Porcine Intestinal Epithelia
Cited by: 35
Author(s): Liang Li, Mei Xue, Fang Fu, Liang Yin, Li Feng, Pinghuang Liu
Software Mentions: 1
Published: about 5 years ago

10.3389/fimmu.2018.01372

CD19+CD24hiCD38hi B Cells Are Expanded in Juvenile Dermatomyositis and Exhibit a Pro-Inflammatory Phenotype After Activation Through Toll-Like Receptor 7 and Interferon-α
Cited by: 60
Author(s): Christopher Piper, Meredyth G Ll Wilkinson, Claire T. Deakin, G. Otto, S Dowle, Chantal L. Duurland, Stuart Adams, Emiliano Marasco, Elizabeth C. Rosser, Anna Radziszewska, Rita Carsetti, Yiannis Ioannou, Philip L. Beales, Daniel Kelberman, David Isenberg, Claudia Mauri, Kiran Nistala, Lucy R. Wedderburn
Software Mentions: 1
Published: over 6 years ago

10.1002/2211-5463.13059

Quantitative comparison of the mRNA content of human iPSC‐derived motor neurons and their extracellular vesicles
Cited by: 4
Author(s): Kentaro Otake, Keiko Adachi-Tominari, Hiroaki Nagai, Masayo Saito, Osamu Sano, Yoshihiko Hirozane, Hidehisa Iwata
Software Mentions: 1
Published: almost 4 years ago

10.1096/fj.201701558R

Macrophage‐derived extracellular vesicles mediate smooth muscle hyperplasia: role of altered miRNA cargo in response to HIV infection and substance abuse
Cited by: 45
Author(s): Himanshu Sharma, Mahendran Chinnappan, Stuti Agarwal, Pranjali Dalvi, Sumedha Gunewardena, Amy O’Brien-Ladner, Navneet K. Dhillon
Software Mentions: 1
Published: over 6 years ago

10.12688/f1000research.9094.2

Selective inhibition of ASIC1a confers functional and morphological neuroprotection following traumatic spinal cord injury
Cited by: 6
Author(s): Liam M. Koehn, Natassya M. Noor, Qing Dong, Sing-Yan Er, Lachlan D. Rash, Glenn F. King, Katarzyna M. Dzięgielewska, NR Saunders, Mark D. Habgood
Software Mentions: 1
Published: almost 8 years ago

10.12688/f1000research.3928.2

edgeR: a versatile tool for the analysis of shRNA-seq and CRISPR-Cas9 genetic screens
Cited by: 68
Author(s): Zhiyin Dai, Julie Sheridan, Linden J. Gearing, Darcy Moore, Shian Su, Sam Wormald, Stephen Wilcox, Liam O’Connor, Ross A. Dickins, Marnie E. Blewitt, Matthew E. Ritchie
Software Mentions: 1
Published: about 10 years ago

10.1186/s40164-021-00230-5

Blocking siglec-10hi tumor-associated macrophages improves anti-tumor immunity and enhances immunotherapy for hepatocellular carcinoma
Cited by: 26
Author(s): Nan Xiao, Xiao‐Dong Zhu, Kangshuai Li, Yifan Chen, Xuefeng Li, Bin Xu, Ming Lei, Jiejie Xu, Hui–Chuan Sun
Software Mentions: 1
Published: over 3 years ago

10.1093/emph/eow010

Human fibroblasts display a differential focal adhesion phenotype relative to chimpanzee
Cited by: 5
Author(s): Alexander S. Advani, Annie Y. Chen, Courtney C. Babbitt
Software Mentions: 1
Published: almost 9 years ago

10.1038/sdata.2016.89

Human whole genome genotype and transcriptome data for Alzheimer’s and other neurodegenerative diseases
Cited by: 312
Author(s): Mariet Allen, Minerva M. Carrasquillo, Cory C. Funk, Benjamin D. Heavner, Fanggeng Zou, Curtis S. Younkin, Jeremy D. Burgess, High Seng Chai, Julia E. Crook, James A. Eddy, Hongdong Li, Ben Logsdon, Mette A. Peters, Kristen K. Dang, Xue Wang, Daniel J. Serie, Chen Wang, Thuy Nguyen, Sarah Lincoln, Kimberly G. Malphrus, Gina Bisceglio, Li Ma, Todd E. Golde, Lara M. Mangravite, Yan W. Asmann, Nathan D. Price, Ronald C. Petersen, Neill R. Graff‐Radford, Dennis W. Dickson, Steven G. Younkin, Nilüfer Ertekin-Taner
Software Mentions: 1
Published: about 8 years ago

10.1111/eva.13024

Age‐dependent expression of cancer‐related genes in a long‐lived seabird
Cited by: 4
Author(s): Richard Meitern, Jérôme Fort, Mathieu Giraudeau, Kalev Rattiste, Elin Sild, Tuul Sepp
Software Mentions: 1
Published: over 4 years ago

10.1186/s13227-016-0050-x

Conserved expression of vertebrate microvillar gene homologs in choanocytes of freshwater sponges
Cited by: 42
Author(s): Jesús F. Peña, Alexandre Alié, Daniel J. Richter, Lingyu Wang, Noriko Funayama, Scott Nichols
Software Mentions: 1
Published: over 8 years ago

10.1155/2018/7538204

An Efficient Feature Selection Strategy Based on Multiple Support Vector Machine Technology with Gene Expression Data
Cited by: 25
Author(s): Ying Zhang, Qingchun Deng, Wenbin Liang, Xuan Zou
Software Mentions: 1
Published: about 6 years ago

10.1186/s13227-016-0044-8

HOX gene complement and expression in the planarian Schmidtea mediterranea
Cited by: 73
Author(s): Ko W. Currie, David D. R. Brown, Shujun Zhu, Changjiang Xu, Véronique Voisin, Gary D. Bader, Bret J. Pearson
Software Mentions: 1
Published: over 8 years ago

10.1155/2020/8591892

Fuzheng Huayu Recipe Prevented and Treated CCl4-Induced Mice Liver Fibrosis through Regulating Polarization and Chemotaxis of Intrahepatic Macrophages via CCL2 and CX3CL1
Cited by: 14
Author(s): Man Zhang, Hongliang Liu, Kai Huang, Yuan Peng, Tao Yue, Changqing Zhao, Xudong Hu, Chenghai Liu
Software Mentions: 1
Published: almost 4 years ago

10.1155/2021/5584099

Transcriptomic Analysis Exploring the Molecular Mechanisms of Hanchuan Zupa Granules in Alleviating Asthma in Rat
Cited by: 2
Author(s): Hai-Long Yin, Yanbo Fan, Dandan Mu, Fei Song, Fang Tian, Qiang Yin
Software Mentions: 1
Published: over 3 years ago

10.3390/ijms21072385

Genome and Transcriptome Sequencing of casper and roy Zebrafish Mutants Provides Novel Genetic Clues for Iridophore Loss
Cited by: 2
Author(s): Chao Bian, Weiting Chen, Zhiqiang Ruan, Zhe Hu, Yu Huang, Yunyun Lv, Tengfei Xu, Jia Li, Qiong Shi, Wei Ge
Software Mentions: 1
Published: over 4 years ago

10.1186/s13072-018-0241-x

Physiological effects of KDM5C on neural crest migration and eye formation during vertebrate development
Cited by: 17
Author(s): Youni Kim, Youngeun Jeong, Kujin Kwon, Tayaba Ismail, Hyun-Kyung Lee, Chowon Kim, Jeen‐Woo Park, Oh Nam Kwon, Beom‐Sik Kang, Dong‐Seok Lee, Tae Joo Park, Taejoon Kwon, Hyun‐Shik Lee
Software Mentions: 1
Published: almost 6 years ago

10.3389/fimmu.2016.00670

Regulation of Marginal Zone B-Cell Differentiation by MicroRNA-146a
Cited by: 22
Author(s): Jennifer K. King, Nolan Ung, May Paing, Jorge R. Contreras, Michael O. Alberti, Thilini R. Fernando, Kelvin Zhang, Matteo Pellegrini, Dinesh S. Rao
Software Mentions: 1
Published: almost 8 years ago

10.3389/fimmu.2020.592569

Helpless Priming Sends CD8+ T Cells on the Road to Exhaustion
Cited by: 23
Author(s): Julia Busselaar, Sun Tian, Hans van Eenennaam, Jannie Borst
Software Mentions: 1
Published: about 4 years ago

10.1016/j.dib.2019.104006

RNA sequencing dataset characterizing transcriptomic responses to dietary changes in Caenorhabditis elegans
Cited by: 5
Author(s): Scott Schumacker, Chloe A.M. Chidester, Ray A. Enke, Matthew R. Marcello
Software Mentions: 1
Published: over 5 years ago

10.1016/j.dib.2020.105805

Transcriptomic dataset of Mycolicibacterium smegmatis exposed to an imidazo[1,2-b][1,2,4,5]tetrazine
Cited by: 1
Author(s): Aleksey A. Vatlin, Ksenia M. Klimina, Svetlana G. Frolova, В. Н. Даниленко, Д. А. Маслов
Software Mentions: 1
Published: over 4 years ago

10.1007/s00109-020-01922-x

Opposite regulation of piRNAs, rRNAs and miRNAs in the blood after subarachnoid hemorrhage
Cited by: 2
Author(s): Rafał Morga, Małgorzata Borczyk, Michał Korostyński, Marcin Piechota, Dżesika Hoinkis, Sławomir Gołda, Tomasz Dziedzic, Agnieszka Słowik, Marek Moskała, Joanna Pera
Software Mentions: 1
Published: over 4 years ago

10.1007/s00109-020-01954-3

Investigating the importance of B cells and antibodies during Trichuris muris infection using the IgMi mouse
Cited by: 4
Author(s): Rinal Sahputra, Erin A. Murphy, Ruth Forman, Iris Mair, Muhammad Zaki Hidayatullah Fadlullah, Ari Waisman, Werner Müller, Kathryn J. Else
Software Mentions: 1
Published: over 4 years ago

10.1042/BSR20210051

GCH1-regulated miRNAs are potential targets for microglial activation in neuropathic pain
Cited by: 9
Author(s): Shu Fang Jia, Guowu Chen, Yanhu Liang, Xiao Liang, Chun Meng
Software Mentions: 1
Published: about 3 years ago

10.3389/fimmu.2019.02888

Mycobacterium abscessus—Bronchial Epithelial Cells Cross-Talk Through Type I Interferon Signaling
Cited by: 15
Author(s): Chongxu Zhang, Huda Asif, Gregory E. Holt, Anthony J. Griswold, Michael Campos, P.A. Bejarano, Nevis Fregien, Mehdi Mirsaeidi
Software Mentions: 1
Published: almost 5 years ago

10.3389/fimmu.2020.01602

Systemic Sclerosis Perturbs the Architecture of the Immunome
Cited by: 10
Author(s): Bhairav Paleja, Andrea Low, Pavanish Kumar, Suzan Saidin, Ahmad Lajam, Sharifah Nur Hazirah, Camillus Chua, Lai Li Yun, Salvatore Albani
Software Mentions: 1
Published: over 4 years ago

10.3389/fimmu.2020.01240

Neonatal Diet Impacts Circulatory miRNA Profile in a Porcine Model
Cited by: 4
Author(s): Laura E. Carr, Anne K. Bowlin, Ahmed A. Elolimy, Stephanie D. Byrum, Charity L. Washam, Christopher E. Randolph, Stewart L. MacLeod, Laxmi Yeruva
Software Mentions: 1
Published: over 4 years ago

10.1155/2020/8209504

miR-152-3p Affects the Progression of Colon Cancer via the KLF4/IFITM3 Axis
Cited by: 13
Author(s): Xiaoyi Zhu, Zhanlong Shen, Da Man, Hang Ruan, Sha Huang
Software Mentions: 1
Published: about 4 years ago

10.1155/2021/5517747

Delivery of miR-224-5p by Exosomes from Cancer-Associated Fibroblasts Potentiates Progression of Clear Cell Renal Cell Carcinoma
Cited by: 11
Author(s): Yifei Liu, Wenqiang Fu, Xiaoan Cao, Shuopeng Li, Tianyu Xiong, Xiaolei Zhang, Xiaotang Wu, Ling Cheng, Yanbing Wei, Bin Gao
Software Mentions: 1
Published: over 3 years ago

10.1155/2020/2953598

miR-139-5p Inhibits Lung Adenocarcinoma Cell Proliferation, Migration, and Invasion by Targeting MAD2L1
Cited by: 23
Author(s): Jianfeng Li, Xi He, Xiaotang Wu, Xiaohui Lu, Yixiong Huang, Yuchen Gong
Software Mentions: 1
Published: about 4 years ago

10.3389/fimmu.2014.00396

RNA-seq Transcriptional Profiling of Peripheral Blood Leukocytes from Cattle Infected with Mycobacterium bovis
Cited by: 48
Author(s): Kirsten E. McLoughlin, Nicolas C. Nalpas, Kévin Rue-Albrecht, John A. Browne, David A. Magee, Kate E. Killick, Stephen D. E. Park, Karsten Hokamp, Kieran G. Meade, Cliona O’Farrelly, Eamonn Gormley, Stephen V. Gordon, David E. MacHugh
Software Mentions: 1
Published: about 10 years ago

10.1155/2021/6241469

miR-30a-5p Regulates Viability, Migration, and Invasion of Lung Adenocarcinoma Cells via Targeting ECT2
Cited by: 4
Author(s): Sangsang Chen, Xuqing Zhu, Jing Zheng, Tingting Xu, Yinmin Xu, Feng Chen
Software Mentions: 1
Published: over 3 years ago

10.1155/2015/915124

Machine Learning and Network Methods for Biology and Medicine
Cited by: 14
Author(s): Chen Lei, Tao Huang, Chuan Lü, Lin Lü, Dandan Li
Software Mentions: 1
Published: almost 10 years ago

10.1155/2021/6684186

A Comprehensive Evaluation of miR-144-3p Expression and Its Targets in Laryngeal Squamous Cell Carcinoma
Cited by: 3
Author(s): Bin-Yu Mo, Jin‐Shu Pang, Wei Dai, Ya-Si Su, Wei Jiang, Su-Hua Huang
Software Mentions: 1
Published: over 3 years ago

10.3389/fimmu.2019.00265

Transcriptome Profiles of Human Visceral Adipocytes in Obesity and Colorectal Cancer Unravel the Effects of Body Mass Index and Polyunsaturated Fatty Acids on Genes and Biological Processes Related to Tumorigenesis
Cited by: 23
Author(s): Manuela Del Cornò, Antonella Baldassarre, Enrica Calura, Lucia Conti, Paolo Martini, Chiara Romualdi, Rosaria Varı́, Beatrice Scazzocchio, Massimo D’Archivio, Andrea Masotti, Sandra Gessani
Software Mentions: 1
Published: almost 6 years ago

10.3389/fimmu.2021.705253

Targeted Transcriptomics of Frog Virus 3 in Infected Frog Tissues Reveal Non-Coding Regulatory Elements and microRNAs in the Ranaviral Genome and Their Potential Interaction with Host Immune Response
Cited by: 5
Author(s): Yun Tian, Collins N. Khwatenge, Jiuyi Li, Francisco De Jesús Andino, Jacques Robert, Yongming Sang
Software Mentions: 1
Published: over 3 years ago

10.1042/BSR20203804

Integrated analysis of ceRNA network and tumor-infiltrating immune cells in esophageal cancer
Cited by: 5
Author(s): Yuhua Chen, Hao Zhou, Zhendong Wang, Zhanghao Huang, Jinjie Wang, Miaosen Zheng, Xuejun Ni, Lei Liu
Software Mentions: 1
Published: over 3 years ago

10.1038/s42003-020-01432-z

Glial granules contain germline proteins in the Drosophila brain, which regulate brain transcriptome
Cited by: 7
Author(s): Samuel J Tindell, Eric C. Rouchka, Alexey L. Arkov
Software Mentions: 1
Published: about 4 years ago

10.1042/BSR20194432

Development of a novel prognostic signature for predicting the overall survival of bladder cancer patients
Cited by: 3
Author(s): Huamei Tang, Lijuan Kan, Tong Ou, Dayang Chen, Xiaowei Dou, Wei Wu, Xiang Ji, Mengmeng Wang, Zhi‐Hong Zong, Hongmei Mo, Xiuming Zhang, Dan Xiong
Software Mentions: 1
Published: over 4 years ago

10.1038/s42003-019-0620-2

Development of a high-productivity, halophilic, thermotolerant microalga Picochlorum renovo
Cited by: 46
Author(s): Lukas R. Dahlin, Alida T. Gerritsen, Calvin A. Henard, Stefanie Van Wychen, Jeffrey G. Linger, Yuliya A. Kunde, Blake T. Hovde, Shawn R. Starkenburg, Matthew C. Posewitz, Michael T. Guarnieri
Software Mentions: 1
Published: about 5 years ago

10.1038/s42003-020-1036-8

Diverse panicle architecture results from various combinations of Prl5/GA20ox4 and Pbl6/APO1 alleles
Cited by: 16
Author(s): Ayumi Agata, K. Ando, Sadayuki Ota, Mikiko Kojima, Yumiko Takebayashi, Shoichiro Takehara, Kouki Doi, Miyako Ueguchi-Tanaka, Takamasa Suzuki, Hitoshi Sakakibara, Makoto Matsuoka, Motoyuki Ashikari, Yoshiaki Inukai, Hidemi Kitano, Tokunori Hobo
Software Mentions: 1
Published: over 4 years ago

10.3389/fonc.2020.00850

CircCSPP1 Functions as a ceRNA to Promote Colorectal Carcinoma Cell EMT and Liver Metastasis by Upregulating COL1A1
Cited by: 19
Author(s): Qingyuan Wang, Li Shi, Kui Shi, Bo Yuan, Gang Cao, Chenchen Kong, Jun Fu, Zhongsong Man, Xu Li, Xuanfeng Zhang, Yifei Feng, Xinglu Jiang, Xinhui Zhang, Jun Yan, Xiaohu Wu, Yueming Sun
Software Mentions: 1
Published: over 4 years ago

10.3390/biom11060771

Transcriptional Cascade in the Regulation of Flowering in the Bamboo Orchid Arundina graminifolia
Cited by: 10
Author(s): Sagheer Ahmad, Chuqiao Lu, Jieqiu Wu, Yonglu Wei, Jie Gao, Jianpeng Jin, Chuanyuan Zheng, Genfa Zhu, Fengming Yang
Software Mentions: 1
Published: over 3 years ago

10.3389/fonc.2021.626858

Genome-Wide Analyses of Prognostic and Therapeutic Alternative Splicing Signatures in Bladder Urothelial Carcinoma
Cited by: 1
Author(s): Zhongru Fan, Zhe Zhang, Chiyuan Piao, Zhuona Liu, Ze‐Shu Wang, Chuize Kong
Software Mentions: 1
Published: over 3 years ago

10.3389/fonc.2020.581985

Bioinformatic Analysis Identifies Potential Key Genes in the Pathogenesis of Melanoma
Cited by: 9
Author(s): Yanjie Han, Xinxin Li, Jiliang Yan, Chunyan Ma, Xin Wang, Hong Pan, Xiaoli Zheng, Zhen Zhang, Biao Gao, Xin‐Ying Ji
Software Mentions: 1
Published: about 4 years ago

10.1038/s42003-021-01814-x

Reduction in organ–organ friction is critical for corolla elongation in morning glory
Cited by: 2
Author(s): Ayaka Shimoki, Satoru Tsugawa, Kentaro Ohashi, Magdalena Toda, Akiteru Maeno, Tomoaki Sakamoto, Seisuke Kimura, Takashi Nobusawa, Mika Nagao, Eiji Nitasaka, Taku Demura, Kiyotaka Okada, Seiji Takeda
Software Mentions: 1
Published: over 3 years ago

10.3389/fonc.2021.736620

A Phase II Trial of Adjuvant Durvalumab Following Trimodality Therapy for Locally Advanced Esophageal and Gastroesophageal Junction Adenocarcinoma: A Big Ten Cancer Research Consortium Study
Cited by: 20
Author(s): Hirva Mamdani, Bryan J. Schneider, Susan M. Perkins, Heather N. Burney, Pashtoon Murtaza Kasi, Laith Abushahin, Thomas J. Birdas, Kenneth A. Kesler, Tracy M. Watkins, Sunil Badve, Milan Radovich, Shadia I. Jalal
Software Mentions: 1
Published: about 3 years ago

10.1371/journal.pone.0191812

Differential miRNA expression in B cells is associated with inter-individual differences in humoral immune response to measles vaccination
Cited by: 19
Author(s): Iana H. Haralambieva, Richard B. Kennedy, Whitney L. Simon, Krista M. Goergen, Diane E. Grill, Inna G. Ovsyannikova, Gregory A. Poland
Software Mentions: 1
Published: almost 7 years ago

10.3389/fonc.2021.699625

Circular RNA hsa_circ_0007507 May Serve as a Biomarker for the Diagnosis and Prognosis of Gastric Cancer
Cited by: 5
Author(s): Weiwei Zhang, Ming Zheng, Shan Kong, Xian Li, Shuting Meng, Xudong Wang, Feng Wang, Chenxue Tang, Shaoqing Ju
Software Mentions: 1
Published: about 3 years ago

10.1371/journal.pone.0224607

Fixation of genetic variation and optimization of gene expression: The speed of evolution in isolated lizard populations undergoing Reverse Island Syndrome
Cited by: 8
Author(s): Maria Buglione, Simona Petrelli, Valeria Maselli, Martina Trapanese, Marco Salvemini, Serena Aceto, Anna Di Cosmo, Domenico Fulgione
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0248351

Key hepatic metabolic pathways are altered in germ-free mice during pregnancy
Cited by: 7
Author(s): Lyrialle W. Han, Yuanyuan Shi, Alison G. Paquette, Lu Wang, Theo K. Bammler, Qingcheng Mao
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pone.0250645

Distribution and diversity of eukaryotic microalgae in Kuwait waters assessed using 18S rRNA gene sequencing
Cited by: 5
Author(s): Vinod Kumar, Sabah Al Momin, Vanitha V. Kumar, Jasim Ahmed, Lamya Al-Musallam, Anisha Shajan, Hamed Al-Aqeel, Hamad Al-Mansour, Walid M. Al-Zakri
Software Mentions: 1
Published: over 3 years ago

10.3389/fonc.2021.687208

LINC00346 Sponges miR-30c-2-3p to Promote the Development of Lung Adenocarcinoma by Targeting MYBL2 and Regulating CELL CYCLE Signaling Pathway
Cited by: 10
Author(s): Qinying Xu, Zuo-Feng Xu, Kai Zhu, Jinlan Lin, Bo Ye
Software Mentions: 1
Published: about 3 years ago

10.1371/journal.pone.0184090

De novo assembly of a transcriptome from the eggs and early embryos of Astropecten aranciacus
Cited by: 8
Author(s): Francesco Musacchia, Filip Vasilev, Marco Borra, Elio Biffali, Remo Sanges, Luigia Santella, Jong Tai Chun
Software Mentions: 1
Published: about 7 years ago

10.3390/biom11020203

Unravelling the Role of LncRNA WT1-AS/miR-206/NAMPT Axis as Prognostic Biomarkers in Lung Adenocarcinoma
Cited by: 18
Author(s): Wen Li, Yu Liu, Zi Jin Li, Yi Shi, Jing Deng, Jie Bai, Liang Ma, Xiao Zeng, Shan Shan Feng, Jia Ren, Feijun Luo, Duo Yan Rong, Xiaoqi Chen, Hua Yin, Chen Zhu, Da Fu
Software Mentions: 1
Published: almost 4 years ago

10.3389/fonc.2021.587548

A 15-Gene Signature and Prognostic Nomogram for Predicting Overall Survival in Non-Distant Metastatic Oral Tongue Squamous Cell Carcinoma
Cited by: 3
Author(s): Muyuan Liu, Litian Tong, Bin Liang, Xuhong Song, Lingzhu Xie, Hanwei Peng, Dongyang Huang
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pone.0200657

Modeling APC mutagenesis and familial adenomatous polyposis using human iPS cells
Cited by: 26
Author(s): Cesar Sommer, Amalia Capilla, F. Javier Molina-Estevez, Andreia Gianotti-Sommer, Nicholas Skvir, Ignacio Caballero, Shantanu Chowdhury, Gustavo Mostoslavsky
Software Mentions: 1
Published: over 6 years ago

10.3389/fonc.2019.00448

Integrated Bioinformatic Analysis of a Competing Endogenous RNA Network Reveals a Prognostic Signature in Endometrial Cancer
Cited by: 20
Author(s): Leilei Xia, Ye Wang, Meng Qi, Xiaoling Su, Jizi Shen, Jing Wang, Haiwei He, Biwei Wen, Caihong Zhang, Man Xu
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0075323

Transcriptome Sequencing and Differential Gene Expression Analysis of Delayed Gland Morphogenesis in Gossypium australe during Seed Germination
Cited by: 25
Author(s): Tao Tao, Liang Zhao, Yuanda Lv, Jiedan Chen, Yan Hu, Tianzhen Zhang, Baoliang Zhou
Software Mentions: 1
Published: about 11 years ago

10.3390/biom10091220

MDA-MB-231 Breast Cancer Cells Resistant to Pleurocidin-Family Lytic Peptides Are Chemosensitive and Exhibit Reduced Tumor-Forming Capacity
Cited by: 6
Author(s): Ashley L. Hilchie, Erin E. Gill, Melanie R. Power Coombs, Reza Falsafi, Robert E. W. Hancock, David W. Hoskin
Software Mentions: 1
Published: over 4 years ago

Projects: bioconductor: edgeR

Papers Mentioning edgeR 6,568