bioconductor: edgeR | Projects | Ecosyste.ms: Papers

10.1155/2020/4623107

Global Transcriptional Profiling Reveals Novel Autocrine Functions of Interleukin 6 in Human Vascular Endothelial Cells
Cited by: 8
Author(s): Liza U. Ljungberg, Mulugeta M. Zegeye, Caroline Kardeby, Knut Fälker, Dirk Repsilber, Allan Sirsjö
Software Mentions: 1
Published: over 4 years ago

10.1007/s00408-019-00257-w

Growth Hormone-Releasing Hormone Receptor Antagonist Modulates Lung Inflammation and Fibrosis due to Bleomycin
Cited by: 29
Author(s): Chongxu Zhang, Renzhi Cai, Aaron Lazerson, Gaëtan J.-R. Delcroix, Medhi Wangpaichitr, Mehdi Mirsaeidi, Anthony J. Griswold, Andrew V. Schally, Robert M. Jackson
Software Mentions: 1
Published: over 5 years ago

10.1534/g3.116.035329

The Phenotypic Plasticity of Duplicated Genes in<i>Saccharomyces cerevisiae</i>and the Origin of Adaptations
Cited by: 31
Author(s): Florian Mattenberger, Beatriz Sabater-Muñoz, Christina Toft, Mario A. Fares
Software Mentions: 1
Published: almost 8 years ago

10.1534/g3.116.037424

Genetic Dissection of a QTL Affecting Bone Geometry
Cited by: 3
Author(s): Olivia L. Sabik, Juan F. Medrano, Charles R. Farber
Software Mentions: 1
Published: over 7 years ago

10.3389/fvets.2021.647153

Integrating miRNA and mRNA Profiling to Assess the Potential miRNA–mRNA Modules Linked With Testicular Immune Homeostasis in Sheep
Cited by: 4
Author(s): Taotao Li, Xia Wang, Ruirui Luo, Xiaopeng An, Yong Zhang, Xingxu Zhao, Youji Ma
Software Mentions: 1
Published: over 3 years ago

10.3389/fpls.2015.00062

Mango (Mangifera indica L.) cv. Kent fruit mesocarp de novo transcriptome assembly identifies gene families important for ripening
Cited by: 52
Author(s): Mitzuko Dautt-Castro, Adrián Ochoa-Leyva, Carmen A. Contreras-Vergara, Magda A. Pacheco-Sánchez, Sergio Casas-Flores, Alejandro Sánchez-Flores, David N. Kuhn, María A. Islas-Osuna
Software Mentions: 1
Published: almost 10 years ago

10.3389/fpls.2020.592603

Zucchini Plants Alter Gene Expression and Emission of (E)-β-Caryophyllene Following Aphis gossypii Infestation
Cited by: 7
Author(s): Alessia Vitiello, Donata Molisso, M. Cristina Digilio, Massimo Giorgini, Giuseppe Colla, T. J. A. Bruce, Nunzio D’Agostino, Rosa Rao
Software Mentions: 1
Published: almost 4 years ago

10.1186/s12944-020-01222-w

Bioinformatics analysis of vascular RNA-seq data revealed hub genes and pathways in a novel Tibetan minipig atherosclerosis model induced by a high fat/cholesterol diet
Cited by: 22
Author(s): Yongming Pan, Yu Chen, Junjie Huang, Yili Rong, Jiaojiao Chen, Minli Chen
Software Mentions: 1
Published: over 4 years ago

10.7150/thno.48028

IL-33/ST2 induces neutrophil-dependent reactive oxygen species production and mediates gout pain
Cited by: 31
Author(s): Chengyu Yin, Boyu Liu, Yuanyuan Li, Xiaojie Li, Jie Wang, Ruixiang Chen, Yan Tai, Qiyang Shou, Ping Wang, Xiaomei Shao, Yi Liang, Hong Zhou, Wen-Li Mi, Jianqiao Fang
Software Mentions: 1
Published: almost 5 years ago

10.1128/IAI.00426-20

An Ixodes scapularis Protein Disulfide Isomerase Contributes to Borrelia burgdorferi Colonization of the Vector
Cited by: 4
Author(s): Yongguo Cao, Connor Rosen, Gunjan Arora, Akash Gupta, Carmen J. Booth, Kristen E. Murfin, Jiří Černý, Alejandro Marín López, Yu-Min Chuang, Xiao‐Tian Tang, Utpal Pal, Aaron M. Ring, Sukanya Narasimhan, Erol Fikrig
Software Mentions: 1
Published: about 4 years ago

10.7150/thno.49186

Discovery of extracellular vesicles derived miR-181a-5p in patient's serum as an indicator for bone-metastatic prostate cancer
Cited by: 28
Author(s): Yanqing Wang, Yuxiang Fang, Baijun Dong, Xin Du, Jialin Wang, Xiao Wang, Wei‐Qiang Gao, Wei Xue
Software Mentions: 1
Published: almost 4 years ago

10.3389/fpls.2020.00526

MADS-Box and bHLH Transcription Factors Coordinate Transmitting Tract Development in Arabidopsis thaliana
Cited by: 20
Author(s): Maurizio Di Marzo, Irma Roig‐Villanova, Eva Zanchetti, Francesca Caselli, Veronica Gregis, Paola Bardetti, Matteo Chiara, Andrea Guazzotti, Elisabetta Caporali, Marta Adelina Mendes, Lucia Colombo, Martin M. Kater
Software Mentions: 1
Published: over 4 years ago

10.1016/j.xinn.2020.100052

Regulatory Role of Retinoic Acid in Male Pregnancy of the Seahorse
Cited by: 8
Author(s): Chunyan Li, Yongxin Li, Geng Qin, Zelin Chen, Meng Qu, Bo Zhang, Xue Han, Xin Wang, Pei‐Yuan Qian, Qiang Lin
Software Mentions: 1
Published: about 4 years ago

10.3390/insects10080245

Genome-Wide Identification of Long Non-Coding RNAs and Their Regulatory Networks Involved in Apis mellifera ligustica Response to Nosema ceranae Infection
Cited by: 30
Author(s): Dafu Chen, Huazhi Chen, Yuguang Du, Dingding Zhou, Suxia Geng, Haipeng Wang, Jieqi Wan, Chuan Xiong, Yusheng Zheng, Rui Guo
Software Mentions: 1
Published: over 5 years ago

10.3389/fpls.2016.00963

Transcriptome Profiling of Light-Regulated Anthocyanin Biosynthesis in the Pericarp of Litchi
Cited by: 43
Author(s): Hongna Zhang, Weicai Li, Huicong Wang, Shengyou Shi, Bo Shu, Liqin Liu, Yongzan Wei
Software Mentions: 1
Published: over 8 years ago

10.3389/fpls.2017.00317

Transcriptome Changes Associated with Boron Deficiency in Leaves of Two Citrus Scion-Rootstock Combinations
Cited by: 12
Author(s): Xiao Liu, Jiawei Zhang, Ling-Xia Guo, Yong-Zhong Liu, Long-Fei Jin, Syed Bilal Hussain, Wei Du, Zhao Deng, Shuang Peng
Software Mentions: 1
Published: over 7 years ago

10.3389/fpls.2015.01179

Transcriptomic Analysis Reveals Key Genes Related to Betalain Biosynthesis in Pulp Coloration of Hylocereus polyrhizus
Cited by: 36
Author(s): Qian Hua, Chengjie Chen, Zhe Chen, Pengkun Chen, Ma Ying, Jingyu Wu, Jian Zheng, Guibing Hu, Jietang Zhao, Yonghua Qin
Software Mentions: 1
Published: almost 9 years ago

10.3390/insects11110816

Chemosensory-Related Gene Family Members of the Horn Fly, Haematobia irritans irritans (Diptera: Muscidae), Identified by Transcriptome Analysis
Cited by: 5
Author(s): Pia U. Olafson, Christopher Saski
Software Mentions: 1
Published: about 4 years ago

10.3389/fpls.2021.713814

The Response of Grain Yield and Root Morphological and Physiological Traits to Nitrogen Levels in Paddy Rice
Cited by: 8
Author(s): Xin Wei, Hualong Liu, Hongwei Zhao, Jingguo Wang, Hongliang Zheng, Yan Jia, Liuqing Yang, Xinpeng Wang, Jiaming Li, Xianwei Li, Lei Lei, Detang Zou
Software Mentions: 1
Published: about 3 years ago

10.1186/s12920-018-0335-0

Whole transcriptome analysis reveals differential gene expression profile reflecting macrophage polarization in response to influenza A H5N1 virus infection
Cited by: 21
Author(s): Na Zhang, Youmei Bao, Amy Hin-Yan Tong, Scott Zuyderduyn, Gary D. Bader, J. S. Malik Peiris, Si Lok, Smy Lee
Software Mentions: 1
Published: over 6 years ago

10.3390/insects12030209

Antennal Transcriptome Analysis and Identification of Candidate Chemosensory Genes of the Harlequin Ladybird Beetle, Harmonia axyridis (Pallas) (Coleoptera: Coccinellidae)
Cited by: 11
Author(s): Gabriele Rondoni, Alessandro Roman, Camille Meslin, Nicolas Montagné, Eric Conti, Emmanuelle Jacquin‐Joly
Software Mentions: 1
Published: over 3 years ago

10.3389/fpls.2017.00492

De novo Transcriptome Analysis of Miscanthus lutarioriparius Identifies Candidate Genes in Rhizome Development
Cited by: 15
Author(s): Ruibo Hu, Changjiang Yu, Xiaoyu Wang, Chunlin Jia, Shengqiang Pei, Kang He, He Guo, Yingzhen Kong, Gongke Zhou
Software Mentions: 1
Published: over 7 years ago

10.1172/jci.insight.89631

Plasma vesicle miRNAs for therapy response monitoring in Hodgkin lymphoma patients
Cited by: 113
Author(s): Monique A.J. van Eijndhoven, Josée M. Zijlstra, Nils J. Groenewegen, Esther E.E. Drees, Stuart van Niele, S. Rubina Baglio, Danijela Koppers-Lalić, Hans van der Voorn, Sten F. W. M. Libregts, Marca H. M. Wauben, Renée X. de Menezes, Jan R.T. van Weering, Rienk Nieuwland, Lydia Visser, Anke van den Berg, Daphne de Jong, D. Michiel Pegtel
Software Mentions: 1
Published: about 8 years ago

10.3389/fpls.2016.00163

Transcriptome Analysis Identifies Candidate Genes Related to Triacylglycerol and Pigment Biosynthesis and Photoperiodic Flowering in the Ornamental and Oil-Producing Plant, Camellia reticulata (Theaceae)
Cited by: 26
Author(s): Qiu-Yang Yao, Hui Huang, Yan Tong, Enhua Xia, Li‐Zhi Gao
Software Mentions: 1
Published: over 8 years ago

10.1186/s12870-018-1307-4

Parallel evolution of storage roots in morning glories (Convolvulaceae)
Cited by: 14
Author(s): Lauren A. Eserman, Robert L. Jarret, James H. Leebens‐Mack
Software Mentions: 1
Published: over 6 years ago

10.7554/eLife.14409

Further support for aneuploidy tolerance in wild yeast and effects of dosage compensation on gene copy-number evolution
Cited by: 38
Author(s): Audrey P. Gasch, James Hose, Michael A. Newton, Maria Sardi, Mun Yong, Zhishi Wang
Software Mentions: 1
Published: over 8 years ago

10.1186/s12870-018-1237-1

Resistance to Plum Pox Virus (PPV) in apricot (Prunus armeniaca L.) is associated with down-regulation of two MATHd genes
Cited by: 30
Author(s): Elena Zuriaga, Carlos Romero, José Blanca, M. L. Badenes
Software Mentions: 1
Published: almost 7 years ago

10.3389/fpls.2016.01194

Temporal-Spatial Transcriptome Analyses Provide Insights into the Development of Petaloid Androecium in Canna indica
Cited by: 8
Author(s): Xueyi Tian, Qianxia Yu, Huanfang Liu, Jingping Liao
Software Mentions: 1
Published: over 8 years ago

10.7554/eLife.49910

SCGN deficiency results in colitis susceptibility
Cited by: 16
Author(s): Luis Sifuentes-Dominguez, Haiying Li, Ernesto M. Llano, Zhe Liu, Anuj Singla, Ashish Patel, Mahesh Kathania, Areen Khoury, Nicholas Norris, Jonathan J. Rios, Petro Starokadomskyy, Jason Park, Purva Gopal, Qi Liu, Shuxin Tan, Lillienne Chan, Theodora S. Ross, Steven M. Harrison, K. Venuprasad, Linda A. Baker, Da Jia, Ezra Burstein
Software Mentions: 1
Published: about 5 years ago

10.1172/jci.insight.143023

Shifting osteogenesis in vascular calcification
Cited by: 11
Author(s): Jiayi Yao, Xinhui Wu, Xuguang Qiao, Daoqin Zhang, Li Zhang, Jocelyn Ma, Xinjiang Cai, Kristina I. Boström, Yucheng Yao
Software Mentions: 1
Published: over 3 years ago

10.3389/fpls.2021.684987

Transcriptome Analysis of Chloris virgata, Which Shows the Fastest Germination and Growth in the Major Mongolian Grassland Plant
Cited by: 1
Author(s): Byambajav Bolortuya, Syutaro Kawabata, Ayumi Yamagami, Bekh Ochir Davaapurev, Fumiyuki Takahashi, Komaki Inoue, Asaka Kanatani, Keiichi Mochida, Minoru Kumazawa, Kentaro Ifuku, Sodnomdarjaa Jigjidsuren, Tugsjargal Battogtokh, Udval Gombosuren, Kazuo Shinozaki, Tadao Asami, Javzan Batkhuu, Takeshi Nakano
Software Mentions: 1
Published: over 3 years ago

10.3389/fpls.2020.00728

Identification of Known and Novel MicroRNAs in Raspberry Organs Through High-Throughput Sequencing
Cited by: 5
Author(s): Gengxuan Yan, Jie Zhang, Meng Jiang, Xince Gao, Hongyi Yang, Lili Li
Software Mentions: 1
Published: over 4 years ago

10.3389/fpls.2021.700651

Transcription Factor GmWRKY46 Enhanced Phosphate Starvation Tolerance and Root Development in Transgenic Plants
Cited by: 9
Author(s): Li Cheng, Kangning Li, Xinyi Liu, Hui Ruan, Min Zheng, Zhijie Yu, Junyi Gai, Shouping Yang
Software Mentions: 1
Published: about 3 years ago

10.3389/fpls.2016.01953

Comparative Transcriptome Analysis between Gynoecious and Monoecious Plants Identifies Regulatory Networks Controlling Sex Determination in Jatropha curcas
Cited by: 27
Author(s): Maosheng Chen, Bang-Zhen Pan, Qi Fu, Yongfu Tao, Jorge Martínez‐Herrera, Longjian Niu, Jun Ni, Yi Dong, Miaomiao Zhao, Zeng-Fu Xu
Software Mentions: 1
Published: almost 8 years ago

10.1186/s12870-018-1356-8

Temporal transcriptome profiling of developing seeds reveals a concerted gene regulation in relation to oil accumulation in Pongamia (Millettia pinnata)
Cited by: 11
Author(s): Jiaoying Huang, Xuehong Hao, Ye Jin, Xiaohuan Guo, Qing Shao, Krishna B. Kumar, Yogesh Ahlawat, David E. Harry, Chandrashekhar P. Joshi, Youliang Zheng
Software Mentions: 1
Published: over 6 years ago

10.3389/fpls.2017.01671

Strigolactones Improve Plant Growth, Photosynthesis, and Alleviate Oxidative Stress under Salinity in Rapeseed (Brassica napus L.) by Regulating Gene Expression
Cited by: 115
Author(s): Ning Ma, Chao Hu, Lin Wan, Qiong Hu, Jie Xiong, Chunlei Zhang
Software Mentions: 1
Published: about 7 years ago

10.3389/fpls.2017.00319

Comparative Transcriptome Reveals Benzenoid Biosynthesis Regulation as Inducer of Floral Scent in the Woody Plant Prunus mume
Cited by: 23
Author(s): Kai Zhao, Weiru Yang, Yuzhen Zhou, Jie Zhang, Yushu Li, Sagheer Ahmad, Qixiang Zhang
Software Mentions: 1
Published: over 7 years ago

10.1021/acs.jafc.1c00130

<sup>1</sup>H NMR Metabolomics and Full-Length RNA-Seq Reveal Effects of Acylated and Nonacylated Anthocyanins on Hepatic Metabolites and Gene Expression in Zucker Diabetic Fatty Rats
Cited by: 8
Author(s): Kang Chen, Xuetao Wei, Raghunath Pariyani, Maaria Kortesniemi, Yumei Zhang, Baoru Yang
Software Mentions: 1
Published: over 3 years ago

10.1016/j.jaci.2016.05.031

Tumor progression locus 2 reduces severe allergic airway inflammation by inhibiting Ccl24 production in dendritic cells
Cited by: 9
Author(s): Yashaswini Kannan, Yanda Li, Stephanie M. Coomes, Isobel Okoye, Victoria S. Pelly, Srividya Sriskantharajah, Eva Gückel, Lauren M. Webb, Stephanie Czieso, Nikolay P. Nikolov, Andrew S. MacDonald, Steven C. Ley, Mark S. Wilson
Software Mentions: 1
Published: almost 8 years ago

10.3389/fpls.2019.01147

Genome-Wide Identification of Calcium-Dependent Protein Kinases in Chlamydomonas reinhardtii and Functional Analyses in Nitrogen Deficiency-Induced Oil Accumulation
Cited by: 9
Author(s): Yajun Li, Xiaowen Fei, Hao‐Fu Dai, Jiangyue Li, Wei Zhu, Xiaodong Deng
Software Mentions: 1
Published: about 5 years ago

10.1186/s40104-017-0202-4

Evaluation of fatty acid metabolism and innate immunity interactions between commercial broiler, F1 layer × broiler cross and commercial layer strains selected for different growth potentials
Cited by: 8
Author(s): Nicky‐Lee Willson, R. E. A. Forder, Rick Tearle, G. S. Nattrass, Robert J. Hughes, P. I. Hynd
Software Mentions: 1
Published: about 7 years ago

10.3389/fpls.2017.00109

Differential Gene Expression Analysis in Polygonum minus Leaf upon 24 h of Methyl Jasmonate Elicitation
Cited by: 24
Author(s): Reyhaneh Rahnamaie-Tajadod, Kok Keong Loke, Hoe-Han Goh, Normah Mohd Noor
Software Mentions: 1
Published: almost 8 years ago

10.1186/s12870-020-2244-6

Genome-wide identification and expression profiling of SET DOMAIN GROUP family in Dendrobium catenatum
Cited by: 22
Author(s): Donghong Chen, Han-Lin Qiu, Yong Huang, Lei Zhang, Jinping Si
Software Mentions: 1
Published: almost 5 years ago

10.1093/jac/dkaa296

A genome-wide analysis of Escherichia coli responses to fosfomycin using TraDIS-Xpress reveals novel roles for phosphonate degradation and phosphate transport systems
Cited by: 13
Author(s): A. Keith Turner, Muhammad Yasir, Sarah Bastkowski, Andrea Telatin, Andrew J. Page, Ian G. Charles, Mark A. Webber
Software Mentions: 1
Published: over 4 years ago

10.1186/s12870-020-02375-7

High post-anthesis temperature effects on bread wheat (Triticum aestivum L.) grain transcriptome during early grain-filling
Cited by: 10
Author(s): Richard Ian Kino, Till K. Pellny, Rachel Mitchell, Asier Gonzalez-Uriarte, Paola Tosi
Software Mentions: 1
Published: over 4 years ago

10.1074/jbc.M116.733733

miR-30 Family Controls Proliferation and Differentiation of Intestinal Epithelial Cell Models by Directing a Broad Gene Expression Program That Includes SOX9 and the Ubiquitin Ligase Pathway
Cited by: 33
Author(s): Bailey C. E. Peck, John Sincavage, Sydney Feinstein, Amanda T. Mah, James G. Simmons, P. Kay Lund, Praveen Sethupathy
Software Mentions: 1
Published: over 8 years ago

10.3389/fpls.2015.00389

Molecular characterization of SQUAMOSA PROMOTER BINDING PROTEIN-LIKE (SPL) gene family from Citrus and the effect of fruit load on their expression
Cited by: 37
Author(s): Liron Shalom, Lyudmila Shlizerman, Naftali Zur, Adi Doron‐Faigenboim, Eduardo Blumwald, Avi Sadka
Software Mentions: 1
Published: over 9 years ago

10.3390/ijms21062128

Cardiac miRNA Expression and their mRNA Targets in a Rat Model of Prediabetes
Cited by: 8
Author(s): Éva Sághy, Imre Vörös, Bence Ágg, Bernadett Kiss, Gábor Koncsos, Zoltán V. Varga, Anikó Görbe, Zoltán Giricz, Rainer Schulz, Péter Ferdinándy
Software Mentions: 1
Published: over 4 years ago

10.7554/eLife.70564

Natural variation in the consequences of gene overexpression and its implications for evolutionary trajectories
Cited by: 19
Author(s): DeElegant Robinson, Michael Place, James Hose, Adam Jochem, Audrey P. Gasch
Software Mentions: 1
Published: over 3 years ago

10.3389/fpls.2021.625729

A Meta-Analysis Reveals Opposite Effects of Biotic and Abiotic Stresses on Transcript Levels of Arabidopsis Intracellular Immune Receptor Genes
Cited by: 11
Author(s): Leiyun Yang, Zhixue Wang, Jian Hua
Software Mentions: 1
Published: over 3 years ago

10.1074/jbc.RA120.015877

Elongin A associates with actively transcribed genes and modulates enhancer RNA levels with limited impact on transcription elongation rate in vivo
Cited by: 13
Author(s): M. Behfar Ardehali, Manashree Damle, Carlos Perea-Resa, Michael D. Blower, Robert E. Kingston
Software Mentions: 1
Published: almost 4 years ago

10.1016/j.jbc.2021.100403

Targeting primary and metastatic uveal melanoma with a G protein inhibitor
Cited by: 20
Author(s): Michael D. Onken, Carol M. Makepeace, Kevin M. Kaltenbronn, Joelle Choi, Leonel F. Hernandez‐Aya, Katherine N. Weilbaecher, Kisha Piggott, P. Kumar Rao, Carla M. Yuede, Alethia J. Dixon, Patrick Osei‐Owusu, John A. Cooper, Kendall J. Blumer
Software Mentions: 1
Published: almost 4 years ago

10.1186/s12870-021-03172-6

De novo transcriptome analysis provides insights into formation of in vitro adventitious root from leaf explants of Arnebia euchroma
Cited by: 6
Author(s): Jyoti Devi, Ekjot Kaur, Mohit Kumar Swarnkar, Vishal Acharya, Shashi Bhushan
Software Mentions: 1
Published: about 3 years ago

10.3389/fpls.2018.00252

The Novel Secreted Meloidogyne incognita Effector MiISE6 Targets the Host Nucleus and Facilitates Parasitism in Arabidopsis
Cited by: 27
Author(s): Qianqian Shi, Zhenchuan Mao, Xiaoping Zhang, Jian Ling, Runmao Lin, Xi Zhang, Rui Li, Yunsheng Wang, Youyou Yang, Xinyue Cheng, Bingyan Xie
Software Mentions: 1
Published: over 6 years ago

10.1186/s12870-019-1742-x

Proteome and transcriptome analyses reveal key molecular differences between quality parameters of commercial-ripe and tree-ripe fig (Ficus carica L.)
Cited by: 25
Author(s): Yuanyuan Cui, Ziran Wang, Shangwu Chen, Alexander Vainstein, Huiqin Ma
Software Mentions: 1
Published: over 5 years ago

10.3389/fpls.2016.00432

Using Transcriptomics to Identify Differential Gene Expression in Response to Salinity among Australian Phragmites australis Clones
Cited by: 18
Author(s): Gareth D. Holmes, Nathan E. Hall, Anthony R. Gendall, Paul I. Boon, Elizabeth A. James
Software Mentions: 1
Published: over 8 years ago

10.1016/j.jbc.2021.101156

Iron loading induces cholesterol synthesis and sensitizes endothelial cells to TNFα-mediated apoptosis
Cited by: 9
Author(s): Allison L. Fisher, Daniel N. Srole, Nicolaos Palaskas, David Meriwether, Srinivasa T. Reddy, Tomas Ganz, Elizabeta Nemeth
Software Mentions: 1
Published: about 3 years ago

10.1186/s12929-018-0477-6

Differential genome-wide profiling of alternative polyadenylation sites in nasopharyngeal carcinoma by high-throughput sequencing
Cited by: 7
Author(s): Ya Xu, Ying Qing Li, Na Liu, Qiuming He, Xin Tang, Xin Wen, Xiao Yang, Ying Sun, Ling TANG
Software Mentions: 1
Published: about 6 years ago

10.1186/s12870-020-02330-6

Physiological and transcriptomic analyses reveal the mechanisms underlying the salt tolerance of Zoysia japonica Steud
Cited by: 16
Author(s): Jingjing Wang, Chunlei An, Hailin Guo, Xiangyang Yang, Jingbo Chen, Jingfeng Zong, Li Jianjian, Jianxiu Liu
Software Mentions: 1
Published: over 4 years ago

10.1186/s12870-019-2067-5

Comparative transcriptome and metabolome analyses provide new insights into the molecular mechanisms underlying taproot thickening in Panax notoginseng
Cited by: 22
Author(s): Xuejiao Li, Jianli Yang, Bin Hao, Yingchun Lu, Zhi-Long Qian, Ying Liu, Shuang Ye, Junrong Tang, Mo Chen, Guangqiang Long, Yan Zhao, Guanghui Zhang, Junwen Chen, Wei Fan, Shengchao Yang
Software Mentions: 1
Published: about 5 years ago

10.3389/fpls.2016.01338

Identification of Candidate Anthocyanin-Related Genes by Transcriptomic Analysis of ‘Furongli’ Plum (Prunus salicina Lindl.) during Fruit Ripening Using RNA-Seq
Cited by: 46
Author(s): Zhi‐Zhen Fang, Dan‐Rong Zhou, Xinfu Ye, Cuicui Jiang, Shao‐Lin Pan
Software Mentions: 1
Published: about 8 years ago

10.7150/jca.33157

Establishment and Characterization of a CTC Cell Line from Peripheral Blood of Breast Cancer Patient
Cited by: 19
Author(s): Pan Zhao, Weiping Zhou, Chang Liu, Huirong Zhang, Zhiqiang Cheng, Weiqing Wu, Kaisheng Liu, Hong Hu, Caineng Zhong, Yayuan Zhang, Dongxian Zhou, Feiyuan Liu, Yong Dai, Jianhong Wang, Chang Zou
Software Mentions: 1
Published: almost 6 years ago

10.3389/fmicb.2018.01565

Comparative Transcriptomics of Cold Growth and Adaptive Features of a Eury- and Steno-Psychrophile
Cited by: 31
Author(s): Isabelle Raymond-Bouchard, Julien Tremblay, Ianina Altshuler, Charles W. Greer, Lyle G. Whyte
Software Mentions: 1
Published: over 6 years ago

10.3389/fmicb.2018.02418

Transcriptome Analysis of a Spray Drying-Resistant Subpopulation Reveals a Zinc-Dependent Mechanism for Robustness in L. lactis SK11
Cited by: 7
Author(s): Annereinou Dijkstra, Marjo Starrenburg, Tilman Todt, Sacha A. F. T. van Hijum, Jeroen Hugenholtz, Peter A. Bron
Software Mentions: 1
Published: about 6 years ago

10.3389/fmicb.2018.00877

Genome-Wide Comparative Functional Analyses Reveal Adaptations of Salmonella sv. Newport to a Plant Colonization Lifestyle
Cited by: 16
Author(s): Marcos H. de Moraes, Emanuel Becerra Soto, Isaí Salas González, Prerak Desai, Chu Wu, Steffen Porwollik, Michael McClelland, Max Teplitski
Software Mentions: 1
Published: over 6 years ago

10.7554/eLife.46551

NRG1 is a critical regulator of differentiation in TP63-driven squamous cell carcinoma
Cited by: 9
Author(s): Ganapati V. Hegde, Cecile de la Cruz, Jennifer M. Giltnane, Lisa Crocker, Avinashnarayan Venkatanarayan, Gabriele Schaefer, Debra Dunlap, Joerg D. Hoeck, Robert Piskol, Florian Gnad, Zora Modrušan, Frédéric J. de Sauvage, Christian W. Siebel, Erica Jackson
Software Mentions: 1
Published: over 5 years ago

10.7150/jca.37267

Overexpression of DUSP6 enhances chemotherapy-resistance of ovarian epithelial cancer by regulating the ERK signaling pathway
Cited by: 17
Author(s): Yan Gao, Hui Li, Qing Han, Yuan Li, Tongxia Wang, Cuiyu Huang, Youdong Mao, Xi Wang, Qun Zhang, Tian Jing, David M. Irwin, Tan H, Hongyan Guo
Software Mentions: 1
Published: almost 5 years ago

10.1186/s12866-016-0739-y

Identification of the crp gene in avian Pasteurella multocida and evaluation of the effects of crp deletion on its phenotype, virulence and immunogenicity
Cited by: 17
Author(s): Xinxin Zhao, Qing Liu, Kangpeng Xiao, Yunlong Hu, Xueyan Liu, Yanyan Li, Qingke Kong
Software Mentions: 1
Published: over 8 years ago

10.3389/fmicb.2020.563139

tpo3 and dur3, Aspergillus fumigatus Plasma Membrane Regulators of Polyamines, Regulate Polyamine Homeostasis and Susceptibility to Itraconazole
Cited by: 6
Author(s): Mingcong Chen, Guowei Zhong, Sha Wang, Jun Zhu, Lei Tang, Lei Li
Software Mentions: 1
Published: almost 4 years ago

10.3390/ijms16010840

Identification of Retinopathy of Prematurity Related miRNAs in Hyperoxia-Induced Neonatal Rats by Deep Sequencing
Cited by: 12
Author(s): Ran Zhao, Lijuan Qian, Li Jiang
Software Mentions: 1
Published: almost 10 years ago

10.3389/fmicb.2020.00460

Investigating the Role of FlhF Identifies Novel Interactions With Genes Involved in Flagellar Synthesis in Campylobacter jejuni
Cited by: 11
Author(s): Xiaofei Li, Fangzhe Ren, Guoqiang Cai, Pingyu Huang, Qinwen Chai, Ozan Gundogdu, Xinan Jiao, Jinlin Huang
Software Mentions: 1
Published: over 4 years ago

10.1186/1755-8794-6-43

Association of candidate single nucleotide polymorphisms with somatic mutation of the epidermal growth factor receptor pathway
Cited by: 9
Author(s): Samuel Wormald, Liz Milla, Liam O’Connor
Software Mentions: 1
Published: about 11 years ago

10.7150/jca.47902

Clinical significance of long non-coding RNA DUXAP8 and its protein coding genes in hepatocellular carcinoma
Cited by: 10
Author(s): Xiangkun Wang, Xiwen Liao, Rui Huang, Jianlu Huang, Zijun Chen, Xin Zhou, Chengkun Yang, Chuangye Han, Guangzhi Zhu, Tao Peng
Software Mentions: 1
Published: almost 5 years ago

10.3390/ijms16059152

Expression Profiling Reveals Genes Involved in the Regulation of Wool Follicle Bulb Regression and Regeneration in Sheep
Cited by: 19
Author(s): Guangbin Liu, Ruize Liu, Xiaohui Tang, Jianhua Cao, Zhao Song, Mei Yu
Software Mentions: 1
Published: over 9 years ago

10.3389/fmicb.2020.01264

Yeast Assimilable Nitrogen Concentrations Influence Yeast Gene Expression and Hydrogen Sulfide Production During Cider Fermentation
Cited by: 10
Author(s): Yangbo Song, Patrick A. Gibney, Lailiang Cheng, Shuwen Liu, Gregory M. Peck
Software Mentions: 1
Published: over 4 years ago

10.3389/fmicb.2019.01873

Hydrogen Oxidation Influences Glycogen Accumulation in a Verrucomicrobial Methanotroph
Cited by: 12
Author(s): Carlo R. Carere, Ben McDonald, Hanna Peach, Chris Greening, Daniel J. Gapes, Christophe Collet, Matthew B. Stott
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms160613959

Transcriptional Profiling Reveals Differential Gene Expression of Amur Ide (Leuciscus waleckii) during Spawning Migration
Cited by: 11
Author(s): Jun Cui, Jian Xu, Songhao Zhang, Kai Wang, Yanliang Jiang, Shahid Mahboob, Khalid A. Al‐Ghanim, Peng Xu
Software Mentions: 1
Published: over 9 years ago

10.1186/s12870-019-1824-9

Analysis of metabolic pathways related to fertility restoration and identification of fertility candidate genes associated with Aegilops kotschyi cytoplasm in wheat (Triticum aestivum L.)
Cited by: 7
Author(s): Sha Li, Zihan Liu, Yulin Jia, Jiali Ye, Xiaohong R. Yang, Lingli Zhang, Xiyue Song
Software Mentions: 1
Published: over 5 years ago

10.1186/s12870-021-02827-8

Transcriptomic and chemical analyses to identify candidate genes involved in color variation of sainfoin flowers
Cited by: 5
Author(s): Yu Qiao, Qiming Cheng, Yutong Zhang, Yan Wang, Fengyan Yi, Fengling Shi
Software Mentions: 1
Published: almost 4 years ago

10.7150/jca.46084

UXT antisense RNA 1 sever as a novel prognostic long non-coding RNA in early stage pancreatic ductal adenocarcinoma patients after receiving pancreaticoduodenectomy
Cited by: 1
Author(s): Xiwen Liao, Rui Huang, Xiangkun Wang, Ketuan Huang, Chengkun Yang, Xin Zhou, Chuangye Han, Hao Su, Xinping Ye, Kang Liu, Guangzhi Zhu, Tao Peng
Software Mentions: 1
Published: almost 4 years ago

10.3389/fmicb.2014.00430

Wolbachia is not all about sex: male-feminizing Wolbachia alters the leafhopper Zyginidia pullula transcriptome in a mainly sex-independent manner
Cited by: 12
Author(s): Hosseinali Asgharian, Peter L. Chang, Peter John Mazzoglio, Ilaria Negri
Software Mentions: 1
Published: about 10 years ago

10.3390/ijms17010012

Identification of the Avian Pasteurella multocida phoP Gene and Evaluation of the Effects of phoP Deletion on Virulence and Immunogenicity
Cited by: 16
Author(s): Kangpeng Xiao, Qing Liu, Xueyan Liu, Yunlong Hu, Xinxin Zhao, Qingke Kong
Software Mentions: 1
Published: almost 9 years ago

10.3389/fmicb.2018.01765

Comparative Transcriptomic Analysis of Streptococcus thermophilus TH1436 and TH1477 Showing Different Capability in the Use of Galactose
Cited by: 18
Author(s): Sabrina Giaretta, Laura Treu, Veronica Vendramin, Vinícius da Silva Duarte, Armin Tarrah, Stefano Campanaro, Viviana Corich
Software Mentions: 1
Published: over 6 years ago

10.3389/fmicb.2018.00859

Comparative Metatranscriptomics of Wheat Rhizosphere Microbiomes in Disease Suppressive and Non-suppressive Soils for Rhizoctonia solani AG8
Cited by: 62
Author(s): Helen L. Hayden, Keith W. Savin, Jenny Wadeson, Vadakattu V. S. R. Gupta, Pauline M. Mele
Software Mentions: 1
Published: over 6 years ago

10.3389/fmicb.2018.01643

Long-Term Land Use Affects Phosphorus Speciation and the Composition of Phosphorus Cycling Genes in Agricultural Soils
Cited by: 54
Author(s): Liu Jin, Barbara J. Cade-Menun, Jianjun Yang, Yongfeng Hu, Corey W. Liu, Julien Tremblay, Kerry LaForge, Michael P. Schellenberg, Chantal Hamel, Luke D. Bainard
Software Mentions: 1
Published: over 6 years ago

10.3389/fmicb.2019.00150

Deciphering the Antibacterial Mode of Action of Alpha-Mangostin on Staphylococcus epidermidis RP62A Through an Integrated Transcriptomic and Proteomic Approach
Cited by: 35
Author(s): Murugesan Sivaranjani, Katarzyna Leskinen, Chairmandurai Aravindraja, Päivi Saavalainen, Shunmugiah Karutha Pandian, Mikael Skurnik, Arumugam Veera Ravi
Software Mentions: 1
Published: almost 6 years ago

10.3390/ijms17030283

Physiological Investigation and Transcriptome Analysis of Polyethylene Glycol (PEG)-Induced Dehydration Stress in Cassava
Cited by: 73
Author(s): Lili Fu, Zehong Ding, Bingying Han, Wei Hu, Yajun Li, Jiaming Zhang
Software Mentions: 1
Published: over 8 years ago

10.1111/jcmm.14048

MCLPMDA: A novel method for miRNA-disease association prediction based on matrix completion and label propagation
Cited by: 50
Author(s): Shengsheng Yu, Cheng Liang, Qiu Xiao, Guanghui Li, Pingjian Ding, Jiawei Luo
Software Mentions: 1
Published: almost 6 years ago

10.3390/ijms17050689

Genome-Wide Transcriptome Profiling of Mycobacterium smegmatis MC2 155 Cultivated in Minimal Media Supplemented with Cholesterol, Androstenedione or Glycerol
Cited by: 10
Author(s): Qun Li, Fanglan Ge, Yunya Tan, Guangxiang Zhang, Wei Li
Software Mentions: 1
Published: over 8 years ago

10.1111/jcmm.14567

MicroRNA‐transcriptome networks in whole blood and monocytes of women undergoing preterm labour
Cited by: 12
Author(s): Alison G. Paquette, Oksana Shynlova, Xiaogang Wu, Mark Kibschull, Kai Wang, Nathan D. Price, Stephen J. Lye
Software Mentions: 1
Published: over 5 years ago

10.1111/jcmm.14627

Long non‐coding RNA LINC01225 promotes proliferation, invasion and migration of gastric cancer via Wnt/β‐catenin signalling pathway
Cited by: 13
Author(s): Ying Xü, Guohua Zhang, Chen Zou, Wenliang Qi, Zhigang Gong, Guoliang Zhang, Guansheng Ma, Wenbo Zhang, Pengcheng Jiang
Software Mentions: 1
Published: about 5 years ago

10.3389/fmicb.2021.615893

Transcriptome Profiling Reveals a Novel Mechanism of Antiviral Immunity Upon Sacbrood Virus Infection in Honey Bee Larvae (Apis cerana)
Cited by: 10
Author(s): Yanjun Guo, Zhengyi Zhang, Mingsheng Zhuang, Liuhao Wang, Kai Li, Jun Yao, Huipeng Yang, Jiaxing Huang, Ya Hao, Ying Fan, Hira Mannan, Jie Wu, Yanping Chen, Jilian Li
Software Mentions: 1
Published: over 3 years ago

10.3389/fmicb.2018.00356

Comparative Genomics of the Baltic Sea Toxic Cyanobacteria Nodularia spumigena UHCC 0039 and Its Response to Varying Salinity
Cited by: 12
Author(s): Jonna Teikari, Songjun Hou, Matti Wahlsten, Wolfgang R. Hess, Kaarina Sivonen
Software Mentions: 1
Published: over 6 years ago

10.1111/jcmm.14719

Systematic construction and validation of an immune prognostic model for lung adenocarcinoma
Cited by: 43
Author(s): Chenghan Luo, Mengyuan Lei, Yixia Zhang, Qian Zhang, Lifeng Li, Jingyao Lian, Shasha Li, Liping Wang, Guofu Pi
Software Mentions: 1
Published: almost 5 years ago

10.3389/fmicb.2017.00180

Critical Issues in Mycobiota Analysis
Cited by: 63
Author(s): Bettina Halwachs, Nandhitha Madhusudhan, Robert Krause, R. Henrik Nilsson, Christine Moissl-Eichinger, Christoph Högenauer, Gerhard G. Thallinger, Gregor Gorkiewicz
Software Mentions: 1
Published: almost 8 years ago

10.3390/ijms17050690

Optimizing Hybrid de Novo Transcriptome Assembly and Extending Genomic Resources for Giant Freshwater Prawns (Macrobrachium rosenbergii): The Identification of Genes and Markers Associated with Reproduction
Cited by: 19
Author(s): Hyungtaek Jung, Byung-Ha Yoon, Woo Jin Kim, Dong-Wook Kim, David A. Hurwood, Russell E. Lyons, Krishna R. Salin, Heui‐Soo Kim, Ilseon Baek, Vincent Chand, Peter B. Mather
Software Mentions: 1
Published: over 8 years ago

10.1111/jcmm.15090

Hedgehog signalling mediates drug resistance through targeting TAP1 in hepatocellular carcinoma
Cited by: 22
Author(s): Xiaotian Zhou, Jia Ding, Hui‐Yan Li, Jie‐Liang Zuo, Shengyang Ge, Hongyan Jia, Jian Wu
Software Mentions: 1
Published: over 4 years ago

10.1111/jcmm.15161

LncRNA ADAMTS9‐AS2 suppresses the proliferation of gastric cancer cells and the tumorigenicity of cancer stem cells through regulating SPOP
Cited by: 18
Author(s): Feiran Wang, Chong Tang, Dong Xu, Yijie Tang, Yasu Jiang, Xuesong Gao, Jiacheng Xu
Software Mentions: 1
Published: over 4 years ago

10.3389/fmicb.2016.01545

New Genes Involved in Osmotic Stress Tolerance in Saccharomyces cerevisiae
Cited by: 18
Author(s): Ramón González, Pilar Morales, Jordi Tronchoni, Gustavo Cordero-Bueso, Enrico Vaudano, Manuel Quirós, Maïté Novo, Rafael Torres‐Pérez, Eva Valero
Software Mentions: 1
Published: about 8 years ago

10.3389/fmicb.2016.00078

Integrated Translatomics with Proteomics to Identify Novel Iron–Transporting Proteins in Streptococcus pneumoniae
Cited by: 31
Author(s): Xiao-Yan Yang, Kui He, Gaofei Du, Xiaohui Wu, Guangchuang Yu, Yunlong Pan, Gong Zhang, Xia Sun, Qing‐Yu He
Software Mentions: 1
Published: almost 9 years ago

Projects: bioconductor: edgeR

Papers Mentioning edgeR 6,568