bioconductor: edgeR | Projects | Ecosyste.ms: Papers

10.1038/s41598-017-07388-1

Evolutionary shifts in gene expression decoupled from gene duplication across functionally distinct spider silk glands
Cited by: 27
Author(s): Thomas H. Clarke, Jessica E. Garb, Robert A. Haney, R. Crystal Chaw, Cheryl Y. Hayashi, Nadia A. Ayoub
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-017-07798-1

Virulence and transcriptome profile of multidrug-resistant Escherichia coli from chicken
Cited by: 15
Author(s): Hamid Hussain, Iqbal Zahid, Mohamed N. Seleem, Deyu Huang, Adeel Sattar, Haihong Hao, Yuan Zhang
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-017-10272-7

HIV-1 envelope glycoprotein stimulates viral transcription and increases the infectivity of the progeny virus through the manipulation of cellular machinery
Cited by: 10
Author(s): Xiaozhuo Ran, Zhujun Ao, Adriana Trajtman, Wayne Xu, Gary P. Kobinger, Yoav Keynan, Xiaojian Yao
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-017-09617-z

A time series transcriptome analysis of cassava (Manihot esculenta Crantz) varieties challenged with Ugandan cassava brown streak virus
Cited by: 33
Author(s): Teddy Amuge, David Kenneth Berger, Manpreet S. Katari, Alexander Andrew Myburg, S. L. Goldman, Morag Ferguson
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-017-10349-3

IRF2BP2-deficient microglia block the anxiolytic effect of enhanced postnatal care
Cited by: 14
Author(s): Aswin Hari, Shelly A. Cruz, Zhaohong Qin, Pascal Couture, Ragnar O. Vilmundarson, Hua Huang, Alexandre F.R. Stewart, Hsiao‐Huei Chen
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-017-08854-6

Genotype-specific physiological and transcriptomic responses to drought stress in Setaria italica (an emerging model for Panicoideae grasses)
Cited by: 46
Author(s): Sha Tang, Lin Li, Yongqiang Wang, Qiannan Chen, Wenying Zhang, Guanqing Jia, Hui Zhi, Bin Zhao, Xianmin Diao
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-017-10098-3

Meta-signature of human endometrial receptivity: a meta-analysis and validation study of transcriptomic biomarkers
Cited by: 163
Author(s): Signe Altmäe, Mariann Koel, Urmo Võsa, Priit Adler, Marina Suhorutšenko, Triin Laisk-Podar, Viktorija Kukushkina, Merli Saare, Agne Velthut-Meikas, Kaarel Krjutškov, Lusine Aghajanova, P. G. L. Lalitkumar, Kristina Gemzell‐Danielsson, Linda C. Giudice, Carlos Simón, Andres Salumets
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-017-09554-x

LSD1 modulates the non-canonical integrin β3 signaling pathway in non-small cell lung carcinoma cells
Cited by: 12
Author(s): So‐Young Lim, Iris Macheleidt, Priya Dalvi, Stephan Schäfer, Martin Kerick, Luka Ozretić, Sandra Ortiz-Cuarán, Julie George, Sabine Merkelbach‐Bruse, Jürgen Wolf, Bernd Timmermann, Roman K. Thomas, Michal R. Schweiger, Reinhard Buettner, Margarete Odenthal
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-017-10742-y

RNA-seq analysis of apical meristem reveals integrative regulatory network of ROS and chilling potentially related to flowering in Litchi chinensis
Cited by: 12
Author(s): Xingyu Lu, Jingjing Li, Houbin Chen, Jiaqi Hu, Pengxu Liu, Biyan Zhou
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-017-11456-x

Antennal transcriptome and expression analyses of olfactory genes in the sweetpotato weevil Cylas formicarius
Cited by: 25
Author(s): Shuying Bin, Meng-Qiu Qu, Xinhua Pu, Zhongzhen Wu, Jintian Lin
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-017-11588-0

Comparative transcriptome analysis of axillary buds in response to the shoot branching regulators gibberellin A3 and 6-benzyladenine in Jatropha curcas
Cited by: 36
Author(s): Jun Ni, Miaomiao Zhao, Maosheng Chen, Bang-Zhen Pan, Yongfu Tao, Zeng-Fu Xu
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-017-10675-6

Toxoplasma Modulates Signature Pathways of Human Epilepsy, Neurodegeneration & Cancer
Cited by: 83
Author(s): Huân M. Ngô, Ying Zhou, Hernán Lorenzi, Kai Wang, Taek Kyun Kim, Yong Zhou, Kamal El Bissati, Ernest Mui, Laura Fraczek, Seesandra V. Rajagopala, Craig W. Roberts, Fiona L. Henriquez, Alexandre Montpetit, Jenefer M. Blackwell, Sarra E. Jamieson, Kelsey Wheeler, Ian J. Begeman, Carlos Andrés Naranjo Galvis, Ney Alliey‐Rodriguez, Roderick G. Davis, Liliana Soroceanu, Charles S. Cobbs, Dennis A. Steindler, Kenneth M. Boyer, A. Gwendolyn Noble, Charles N. Swisher, Peter Heydemann, Peter Rabiah, Shawn Withers, Patricia Soteropoulos, Leroy Hood, Rima McLeod
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-017-12025-y

Molecular dissection of transcriptional reprogramming of steviol glycosides synthesis in leaf tissue during developmental phase transitions in Stevia rebaudiana Bert
Cited by: 47
Author(s): Gopal Singh, Gagandeep Singh, Pradeep Singh, Rajni Parmar, Navgeet Paul, Radhika Vashist, Mohit Kumar Swarnkar, Ashok Kumar, Sanatsujat Singh, Anil Kumar Singh, Sanjay Kumar, Ram Kumar Sharma
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-017-12875-6

Membrane Trafficking Modulation during Entamoeba Encystation
Cited by: 11
Author(s): Emily K. Herman, Maria A. Siegesmund, Michael Bottery, Ronny van Aerle, Maulood Mohammed Shather, Elisabet Caler, Joel B. Dacks, Mark van der Giezen
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-017-12537-7

Dynamic mRNA and miRNA expression analysis in response to hypoxia and reoxygenation in the blunt snout bream (Megalobrama amblycephala)
Cited by: 17
Author(s): Shengming Sun, Fujun Xuan, Xianping Ge, Jian Zhu, Wuxiao Zhang
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-017-14673-6

Epigenetics and adaptive phenotypic variation between habitats in an asexual snail
Cited by: 50
Author(s): Jennifer L. M. Thorson, Mark W. Smithson, Daniel Beck, Ingrid Sadler‐Riggleman, Eric Nilsson, Mark F. Dybdahl, Michael K. Skinner
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-017-14736-8

Differential gene expression of Australian Cricotopus draysoni (Diptera: Chironomidae) populations reveals seasonal association in detoxification gene regulation
Cited by: 5
Author(s): Matt N. Krosch, Litticia M. Bryant, Sue Vink
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-017-13999-5

The non-invasive exfoliated transcriptome (exfoliome) reflects the tissue-level transcriptome in a mouse model of NSAID enteropathy
Cited by: 19
Author(s): Canaan Whitfield-Cargile, Noah D. Cohen, Kejun He, Ivan Ivanov, Jennifer S. Goldsby, Ana M. Chamoun‐Emanuelli, Brad R. Weeks, Laurie A. Davidson, Robert S. Chapkin
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-017-14808-9

Antibiotics induce polarization of pleural macrophages to M2-like phenotype in patients with tuberculous pleuritis
Cited by: 13
Author(s): Sisi Wang, Jian Zhang, Liyan Sui, Hao Xu, Qianling Piao, Ying Liu, Xiangping Qu, Ying Sun, Lei Song, Dan Li, Liping Peng, Shucheng Hua, Guangan Hu, Jianzhu Chen
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-017-14913-9

Differential transcriptome regulation by 3,5-T2 and 3′,3,5-T3 in brain and liver uncovers novel roles for thyroid hormones in tilapia
Cited by: 16
Author(s): Arturo Olverá, Christopher J. Martyniuk, Nicolas Buisine, Verónica Jiménez-Jacinto, Alejandro Sánchez-Flores, Laurent M. Sachs, Aurea Orozco
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-017-15699-6

Transcriptomic analysis of the regulation of stalk development in flowering Chinese cabbage (Brassica campestris) by RNA sequencing
Cited by: 17
Author(s): Xinmin Huang, Yuling Lei, Hongling Guan, Yanwei Hao, Houcheng Liu, Guangwen Sun, Riyuan Chen, Shiwei Song
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-017-16611-y

OCT4 supports extended LIF-independent self-renewal and maintenance of transcriptional and epigenetic networks in embryonic stem cells
Cited by: 10
Author(s): Runsheng He, Besa Xhabija, Batool Al‐Qanber, Benjamin L. Kidder
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-017-16472-5

Identification of a histone family gene signature for predicting the prognosis of cervical cancer patients
Cited by: 42
Author(s): Xiaofang Li, Run Tian, Hugh Gao, Yongkang Yang, Bryan R.G. Williams, Michael P. Gantier, Nigel A.J. McMillan, Dakang Xu, Yiqun Hu, Yue Gao
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-017-16930-0

MALE STERILE6021 (MS6021) is required for the development of anther cuticle and pollen exine in maize
Cited by: 27
Author(s): Youhui Tian, Senlin Xiao, Juan Liu, Yamuna Somaratne, Hua Zhang, Mingming Wang, Huairen Zhang, Li Zhao, Huabang Chen
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-017-17140-4

Transcriptome analysis of watermelon (Citrullus lanatus) fruits in response to Cucumber green mottle mosaic virus (CGMMV) infection
Cited by: 41
Author(s): Xiaodong Li, Mengnan An, Zihao Xia, Xiaojiao Bai, Yuanhua Wu
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-017-17751-x

The transcriptome of Mycobacterium tuberculosis in a lipid-rich dormancy model through RNAseq analysis
Cited by: 34
Author(s): Diana A. Aguilar-Ayala, Laurentijn Tilleman, Filip Van Nieuwerburgh, Dieter Deforce, Juan Carlos Palomino, Peter Vandamme, Jorge A. González-y-Merchand, Anandi Martin
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-017-18607-0

Differentially expressed microRNAs between cattleyak and yak testis
Cited by: 23
Author(s): Cheng Xu, Shan Wu, Wangsheng Zhao, TserangDonko Mipam, Jingbo Liu, Wenjing Liu, Chuanping Yi, Mujahid Ali Shah, Shumin Yu, Xin Cai
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-018-19200-9

Maternal whole blood cell miRNA-340 is elevated in gestational diabetes and inversely regulated by glucose and insulin
Cited by: 37
Author(s): Laura Stirm, Peter Huypens, Steffen Sass, Richa Batra, Louise Fritsche, Sara Y. Brucker, Harald Abele, Anita M. Hennige, Fabian J. Theis, Johannes Beckers, Martin Hrabé de Angelis, Andreas Fritsche, Hans‐Ulrich Häring, Harald Staiger
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-018-19837-6

Persistent activation of interlinked type 2 airway epithelial gene networks in sputum-derived cells from aeroallergen-sensitized symptomatic asthmatics
Cited by: 15
Author(s): Anya C. Jones, Niamh M. Troy, Elisha White, Elysia M. Hollams, Alexander M. Gout, Kak-Ming Ling, Anthony Kicic, Stephen M. Stick, Peter D. Sly, Patrick G. Holt, Graham L. Hall, Anthony Bosco
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-018-19954-2

Different milk diets have substantial effects on the jejunal mucosal immune system of pre-weaning calves, as demonstrated by whole transcriptome sequencing
Cited by: 18
Author(s): H.M. Hammon, D. Frieten, C. Gerbert, Christian Koch, G. Dusel, Rosemarie Weikard, Christa Kühn
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-018-21525-4

Molecular characterization of colorectal adenomas with and without malignancy reveals distinguishing genome, transcriptome and methylome alterations
Cited by: 35
Author(s): Brooke R. Druliner, Panwen Wang, Taejeong Bae, Saurabh Baheti, Seth W. Slettedahl, Douglas W. Mahoney, Nikolaos Vasmatzis, Hang Xu, Min‐Soo Kim, Matthew A. Bockol, Daniel R. O’Brien, Diane E. Grill, Nathaniel D. Warner, Miguel Munoz-Gomez, Kimberlee Kossick, Ruth A. Johnson, Mohamad Mouchli, Donna Felmlee-Devine, Jill Washechek-Aletto, Thomas C. Smyrk, Ann L. Oberg, Junwen Wang, Nicholas Chia, Alexej Abyzov, David A. Ahlquist, Lisa A. Boardman
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-018-21371-4

Characterization of gene regulation and protein interaction networks for Matrin 3 encoding mutations linked to amyotrophic lateral sclerosis and myopathy
Cited by: 28
Author(s): María Carolina Gallego Iradi, Judy C. Triplett, James Thomas, Rachel Davila, Anthony M Crown, Hilda Brown, Jada Lewis, Maurice S. Swanson, Guilian Xu, Edgardo Rodríguez-Lebrón, David R. Borchelt
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-018-23714-7

Vitamin C promotes apoptosis in breast cancer cells by increasing TRAIL expression
Cited by: 61
Author(s): David W. Sant, Sushmita Mustafi, Christopher B. Gustafson, Joshua Chen, Joyce M. Slingerland, Gaofeng Wang
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-018-24284-4

Measurement of metabolite variations and analysis of related gene expression in Chinese liquorice (Glycyrrhiza uralensis) plants under UV-B irradiation
Cited by: 33
Author(s): Xiao Zhang, Xiaoli Ding, Yaxi Ji, Shouchuang Wang, Yingying Chen, Jie Luo, Yingbai Shen, Peng Li
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-020-64288-7

Transcriptome profile analysis of two Vicia faba cultivars with contrasting salinity tolerance during seed germination
Cited by: 19
Author(s): Fangwen Yang, Hongwei Chen, Changyan Liu, Li Li, Liangjun Liu, Xuesong Han, Zhengjie Wan, Aihua Sha
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-64022-3

Transcriptome profiling reveals insertional mutagenesis suppressed the expression of candidate pathogenicity genes in honeybee fungal pathogen, Ascosphaera apis
Cited by: 3
Author(s): Awraris Getachew, Tessema Aynalem Abejew, Jiangli Wu, Jin Xu, Yu Hou, Jian Tan, Peng-Jie Wu, Yan Tu, Weipeng Kang, Zheng Wang, Shufa Xu
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-64890-9

Transcriptomic evidence that insulin signalling pathway regulates the ageing of subterranean termite castes
Cited by: 13
Author(s): Haroon, Xiaoming Ma, Yuxin Li, Hongxin Zhang, Qing Liu, Xiaoqing Su, Lianxi Xing
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-65536-6

Opposite Roles of the JMJD1A Interaction Partners MDFI and MDFIC in Colorectal Cancer
Cited by: 16
Author(s): Shushan Yuan, Yongming Li, Sangphil Oh, Bin Zhang, Willard M. Freeman, Sook Shin, Ralf Janknecht
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-66469-w

Transcriptomic study in women with trisomy 21 identifies a possible role of the GTPases of the immunity-associated proteins (GIMAP) in the protection of breast cancer
Cited by: 13
Author(s): André Mégarbané, David Piquemal, Anne-Sophie Rebillat, Samantha Stora, Fabien Pierrat, Roman Bruno, Florian Noguier, Clotilde Mircher, Aimé Ravel, Marie Vilaire-Meunier, Sophie Durand, Gérard Lefranc
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-66500-0

Transcriptome analyses suggest that changes in fungal endophyte lifestyle could be involved in grapevine bud necrosis
Cited by: 13
Author(s): Thales Henrique Cherubino Ribeiro, Christiane Noronha Fernandes-Brum, C. R. de Souza, Frédérico Alcântara Novelli Dias, Osmar de Almeida-Junior, Murilo de Albuquerque Regina, Kellen Kauanne Pimenta de Oliveira, Gabriel Lasmar dos Reis, Larissa Maia de Oliveira, Fernanda de Paula Fernandes, Laurent Torregrosa, Jorge Teodoro de Souza, Antônio Chalfun-Júnior
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-66675-6

Transcriptome profiling of the flowering transition in saffron (Crocus sativus L.)
Cited by: 23
Author(s): Jing Hu, Yuping Liu, Xiaohui Tang, Huajing Rao, Chaoxiang Ren, Chen Jiang, Qinghua Wu, Yi Jiang, Fuchang Geng, Jin Pei
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-66021-w

Functional shell matrix proteins tentatively identified by asymmetric snail shell morphology
Cited by: 11
Author(s): Akito Ishikawa, Keisuke Shimizu, Yukinobu Isowa, Takeshi Takeuchi, Rongjun Zhao, Keiji Kito, Manabu Fujie, Noriyuki Satoh, Kazuhiko Endo
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-64257-0

Core Binding Factors are essential for ovulation, luteinization, and female fertility in mice
Cited by: 10
Author(s): Somang Lee-Thacker, Hayce Jeon, Yohan Choi, Ichiro Taniuchi, Takeshi Takarada, Yukio Yoneda, Che Myong Ko, Misung Jo
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-67476-7

Co-expression based cancer staging and application
Cited by: 7
Author(s): Xiangchun Yu, Sha Cao, Yi Zhou, Zhezhou Yu, Ying Xu
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-67635-w

Genomics and transcriptomics analysis reveals the mechanism of isobutanol tolerance of a laboratory evolved Lactococcus lactis strain
Cited by: 7
Author(s): Jaya Gupta, Sagar Thapa, Madhulika Verma, Ritu Som, Kakali Mukherjee
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-66387-x

Combined PLT and NE to predict the prognosis of patients with locally advanced cervical cancer
Cited by: 5
Author(s): Han Wang, Wen-Ming Chen, Yong-Heng Zhou, Jianping Shi, Yongzhen Huang, Wenjie Wang
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-68339-x

Transcriptional and in silico analyses of MIF cytokine and TLR signalling interplay in the LPS inflammatory response of Ciona robusta
Cited by: 9
Author(s): Vincenzo Arizza, Angela Bonura, Laura La Paglia, Alfonso Urso, Annalisa Pinsino, Aiti Vizzini
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-69434-9

Comparative transcriptome analysis of Sclerotinia sclerotiorum revealed its response mechanisms to the biological control agent, Bacillus amyloliquefaciens
Cited by: 18
Author(s): Xiaoxiang Yang, Lei Zhang, Yunjia Xiang, Lei Du, Xiaoqin Huang, Yong Liu
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-67760-6

A cluster of metabolism-related genes predict prognosis and progression of clear cell renal cell carcinoma
Cited by: 21
Author(s): Mei Liu, Qiufeng Pan, Ruihai Xiao, Yi Yu, Wenbao Lu, Longwang Wang
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-68637-4

Cellular, mitochondrial and molecular alterations associate with early left ventricular diastolic dysfunction in a porcine model of diabetic metabolic derangement
Cited by: 14
Author(s): Ilkka Heinonen, Oana Sorop, Bas M. van Dalen, Rob C I Wüst, Jens van de Wouw, Vincent J. de Beer, Yanti Octavia, Richard van Duin, Youri Hoogstrate, Lau Blonden, Milla Alkio, Katja Anttila, Andrew Stubbs, Jolanda van der Velden, Daphne Merkus, Dirk J. Duncker
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-70484-2

Construct a circRNA/miRNA/mRNA regulatory network to explore potential pathogenesis and therapy options of clear cell renal cell carcinoma
Cited by: 50
Author(s): Shengjie Bai, Yinying Wu, Yanli Yan, Shuai Shao, Jiangzhou Zhang, Jiaxin Liu, Baojun Hui, Rui Li, Hailin Ma, Xiaozhi Zhang, Juan Ren
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-70932-z

Elucidation of resistance signaling and identification of powdery mildew resistant mapping loci (ClaPMR2) during watermelon-Podosphaera xanthii interaction using RNA-Seq and whole-genome resequencing approach
Cited by: 6
Author(s): Mihir Mandal, Haktan Suren, Chandrasekar S. Kousik
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-71050-6

RNA-Seq analysis of differentially expressed genes of Staphylococcus epidermidis isolated from postoperative endophthalmitis and the healthy conjunctiva
Cited by: 3
Author(s): Qing Liu, Nan Chen, Huabo Chen, Yusen Huang
Software Mentions: 1
Published: about 4 years ago

10.1038/s41598-020-72117-0

A central role for the transcriptional regulator VtlR in small RNA-mediated gene regulation in Agrobacterium tumefaciens
Cited by: 9
Author(s): James A. Budnick, Lauren M. Sheehan, Miranda. J. Ginder, Kevin C. Failor, Julia. M. Perkowski, John. F. Pinto, Kirsten A. Kohl, Lin Kang, Pawel Michalak, Li Luo, Jason E. Heindl, Clayton C. Caswell
Software Mentions: 1
Published: about 4 years ago

10.1038/s41598-020-72448-y

Proteasomal degradation of polycomb-group protein CBX6 confers MMP-2 expression essential for mesothelioma invasion
Cited by: 6
Author(s): Katsuya Sakai, Takumi Nishiuchi, Shoichiro Tange, Yoshinori Suzuki, Seiji Yano, Minoru Terashima, Takeshi Suzuki, Kunio Matsumoto
Software Mentions: 1
Published: about 4 years ago

10.1038/s41598-020-74049-1

De novo transcriptome analysis of the critically endangered alpine Himalayan herb Nardostachys jatamansi reveals the biosynthesis pathway genes of tissue-specific secondary metabolites
Cited by: 8
Author(s): Nisha Dhiman, Anil Kumar, Dinesh Kumar, Amita Bhattacharya
Software Mentions: 1
Published: about 4 years ago

10.1038/s41598-020-74789-0

Metabolomic and transcriptomic analyses reveal the regulation of pigmentation in the purple variety of Dendrobium officinale
Cited by: 23
Author(s): Xinqiao Zhan, Jufeng Qi, Bin Zhou, Bizeng Mao
Software Mentions: 1
Published: about 4 years ago

10.1038/s41598-020-73164-3

Assessing the prognostic value of stemness-related genes in breast cancer patients
Cited by: 5
Author(s): Wenjie Wang, Han Wang, Meng-Sen Wang, Yongzhen Huang, Yuan Ma, Jie Qi, Jianping Shi, Wei Li
Software Mentions: 1
Published: about 4 years ago

10.1038/s41598-020-75537-0

Enhanced FGFR3 activity in postmitotic principal neurons during brain development results in cortical dysplasia and axonal tract abnormality
Cited by: 5
Author(s): Jui-Yen Huang, Bruna Baumgarten Krebs, Marisha Lynn Miskus, May Lin Russell, Eamonn Patrick Duffy, Jason Michael Graf, Hui-Chen Lu
Software Mentions: 1
Published: about 4 years ago

10.1038/s41598-020-76171-6

Characterization of transcriptional response of Lactobacillus plantarum under acidic conditions provides insight into bacterial adaptation in fermentative environments
Cited by: 6
Author(s): Sera Jung, Jong Hee Lee
Software Mentions: 1
Published: about 4 years ago

10.1038/s41598-020-74594-9

Involvement of neutrophils in machineries underlying the rupture of intracranial aneurysms in rats
Cited by: 19
Author(s): Mika Kushamae, Haruka Miyata, Makoto Shirai, Kampei Shimizu, Mieko Oka, Hirokazu Koseki, Yu Abekura, Isao Ono, Kazuhiko Nozaki, Tohru Mizutani, Tomohiro Aoki
Software Mentions: 1
Published: about 4 years ago

10.1038/s41598-020-77177-w

Transcriptome analyses reveals the dynamic nature of oil accumulation during seed development of Plukenetia volubilis L.
Cited by: 6
Author(s): Lu Guo, Zhihua Wu, Peng Yan, Xiuhua Shang, Yi Xie, R. J. Arnold
Software Mentions: 1
Published: almost 4 years ago

10.1038/s41598-020-77598-7

Functional characterisation of the transcriptome from leaf tissue of the fluoroacetate-producing plant, Dichapetalum cymosum, in response to mechanical wounding
Cited by: 7
Author(s): Selisha A. Sooklal, Phelelani T. Mpangase, Mihai-Silviu Tomescu, Shaun Aron, Scott Hazelhurst, Robert H. Archer, Karl Rumbold
Software Mentions: 1
Published: almost 4 years ago

10.1038/s41598-020-77293-7

Comparative transcriptome analysis implied a ZEP paralog was a key gene involved in carotenoid accumulation in yellow-fleshed sweetpotato
Cited by: 13
Author(s): Koichi Suematsu, Masaru Tanaka, Rie Kurata, Kai Yu
Software Mentions: 1
Published: almost 4 years ago

10.1038/s41598-020-78976-x

Early pregnancy maternal progesterone administration alters pituitary and testis function and steroid profile in male fetuses
Cited by: 13
Author(s): Katarzyna Siemienowicz, Yili Wang, Magda Marečková, Junko Nio‐Kobayashi, Paul A. Fowler, Michael T. Rae, W. Colin Duncan
Software Mentions: 1
Published: almost 4 years ago

10.1038/s41598-020-78781-6

Identifying transcription factors that reduce wood recalcitrance and improve enzymatic degradation of xylem cell wall in Populus
Cited by: 6
Author(s): Chiaki Hori, Naoki Takata, Pui Ying Lam, Yuki Tobimatsu, Soichiro Nagano, Jenny C. Mortimer, Dan Cullen
Software Mentions: 1
Published: almost 4 years ago

10.1038/s41598-020-80837-6

Transcriptome and phytochemical analyses provide insights into the organic sulfur pathway in Allium hirtifolium
Cited by: 6
Author(s): Aboozar Soorni, Amir Mohammad Akrami, Reza Abolghasemi, Maryam Vahedi
Software Mentions: 1
Published: almost 4 years ago

10.1038/s41598-020-80280-7

Comparative transcriptome analysis reveals resistant and susceptible genes in tobacco cultivars in response to infection by Phytophthora nicotianae
Cited by: 15
Author(s): He Meng, Mingming Sun, Zipeng Jiang, Yutong Liu, Yu Sun, Dan Liŭ, Caihong Jiang, Min Ren, Guangdi Yuan, Wenlong Yu, Qi Sheng Feng, Aiguo Yang, Lei Cheng, Yuanying Wang
Software Mentions: 1
Published: almost 4 years ago

10.1038/s41598-021-81164-0

Androgen receptor and its splice variant, AR-V7, differentially induce mRNA splicing in prostate cancer cells
Cited by: 9
Author(s): Manjul Rana, Jianrong Dong, Matthew J. Robertson, Cristian Coarfa, Nancy L. Weigel
Software Mentions: 1
Published: almost 4 years ago

10.1038/s41598-020-80680-9

GATA3 somatic mutations are associated with clinicopathological features and expression profile in TCGA breast cancer patients
Cited by: 14
Author(s): Fahimeh Afzaljavan, Ayeh Sadat Sadr, Sevtap Savas, Alireza Pasdar
Software Mentions: 1
Published: almost 4 years ago

10.1038/s41598-021-81856-7

Freshwater mussels (Unionidae) brought into captivity exhibit up-regulation of genes involved in stress and energy metabolism
Cited by: 10
Author(s): Ieva Roznere, Brandon T. Sinn, Marymegan Daly, G. Thomas Watters
Software Mentions: 1
Published: almost 4 years ago

10.1038/s41598-021-82284-3

Notch signaling-modified mesenchymal stem cells improve tissue perfusion by induction of arteriogenesis in a rat hindlimb ischemia model
Cited by: 7
Author(s): Shigeru Miyagawa, Shigeru Miyagawa, Takuji Kawamura, Takashi Shibuya, Kenichi Watanabe, Tomoya Nakagawa, Akira Harada, Dai Chida, Yoshiki Sawa
Software Mentions: 1
Published: almost 4 years ago

10.1038/s41598-021-82509-5

Long non-coding RNAs as novel therapeutic targets in juvenile myelomonocytic leukemia
Cited by: 7
Author(s): Mattias Hofmans, Tim Lammens, Barbara Depreter, Ying Wu, Miriam Erlacher, Aurélie Cayé, Hélène Cavé, Christian Flotho, Valérie de Haas, Charlotte M. Niemeyer, Jan Starý, Filip Van Nieuwerburgh, Dieter Deforce, Wouter Van Loocke, Pieter Van Vlierberghe, Jan Philippé, Barbara De Moerloose
Software Mentions: 1
Published: almost 4 years ago

10.1038/s41598-021-83074-7

Small RNAs and their targets are associated with the transgenerational effects of water-deficit stress in durum wheat
Cited by: 13
Author(s): Haipei Liu, Amanda J. Able, Jason A. Able
Software Mentions: 1
Published: almost 4 years ago

10.1038/s41598-021-82848-3

A transcriptomic view to wounding response in young Scots pine stems
Cited by: 9
Author(s): Kean‐Jin Lim, Tanja Paasela, Anni Harju, Martti Venäläinen, Lars Paulín, Petri Auvinen, Katri Kärkkäinen, Teemu H. Teeri
Software Mentions: 1
Published: almost 4 years ago

10.1038/s41598-021-83835-4

Lysosome repositioning as an autophagy escape mechanism by Mycobacterium tuberculosis Beijing strain
Cited by: 12
Author(s): Thanida Laopanupong, Pinidphon Prombutara, Phongthon Kanjanasirirat, Salisa Benjaskulluecha, Atsadang Boonmee, Tanapat Palaga, Stéphane Méresse, Jiraporn Paha, Tegar Adriansyah Putra Siregar, Tanawadee Khumpanied, Suparerk Borwornpinyo, Angkana Chaiprasert, Pongsak Utaisincharoen, Marisa Ponpuak
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-021-84355-x

The role of gut microbiota and amino metabolism in the effects of improvement of islet β-cell function after modified jejunoileal bypass
Cited by: 9
Author(s): Cai Tan, Zhihua Zheng, Xiaogang Wan, Jiaqing Cao, Ran Wei, Jinyuan Duan
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-021-84402-7

Absence of X-chromosome dosage compensation in the primordial germ cells of Drosophila embryos
Cited by: 3
Author(s): Ryoma Ota, Makoto Hayashi, Shumpei Morita, Hideharu Miura, Satoru Kobayashi
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-021-84519-9

Comparative transcriptome profiles of large and small bodied large-scale loaches cultivated in paddy fields
Cited by: 3
Author(s): Liulan Zhao, Kuo He, Qing Xiao, Qiao Li, Wei Luo, Jie Luo, Hongmei Fu, Jiayao Li, Xugan Wu, Jun Du, Quan Gong, Xun Wang
Software Mentions: 1
Published: over 3 years ago

10.7554/eLife.09594

A robust transcriptional program in newts undergoing multiple events of lens regeneration throughout their lifespan
Cited by: 28
Author(s): Konstantinos Sousounis, Feng Qi, Manisha Yadav, José Luis Millán, Fubito Toyama, Chikafumi Chiba, Yukiko Eguchi, Goro Eguchi, Panagiotis A. Tsonis
Software Mentions: 1
Published: about 9 years ago

10.7554/eLife.68054

SMA-miRs (miR-181a-5p, -324-5p, and -451a) are overexpressed in spinal muscular atrophy skeletal muscle and serum samples
Cited by: 9
Author(s): Emanuela Abiusi, Paola Infante, Cinzia Cagnoli, Ludovica Lospinoso Severini, Marika Pane, Giorgia Coratti, Maria Carmela Pera, Adele D’Amico, F Diano, Agnese Novelli, Serena Spartano, Stefania Fiori, Giovanni Baranello, Isabella Moroni, Marina Mora, Maria Barbara Pasanisi, Krizia Pocino, Loredana Le Pera, Davide D’Amico, Lorena Travaglini, Francesco Ria, Claudio Bruno, Denise Locatelli, Enrico Bertini, Lucia Morandi, Eugenio Mercuri, Lucia Di Marcotullio, Francesco Danilo Tiziano
Software Mentions: 1
Published: about 3 years ago

10.7554/eLife.08833

Suppression of transcriptional drift extends C. elegans lifespan by postponing the onset of mortality
Cited by: 68
Author(s): Sunitha Rangaraju, Gregory M. Solis, Ryan Thompson, Rafael L. Gomez‐Amaro, Leo Kurian, Sandra E. Encalada, Alexander B. Niculescu, Daniel R. Salomon, Michael Petrascheck
Software Mentions: 1
Published: almost 9 years ago

10.7554/eLife.59177

A mechanistic model and therapeutic interventions for COVID-19 involving a RAS-mediated bradykinin storm
Cited by: 291
Author(s): Michael R. Garvin, Christiane Alvarez, J Izaak Miller, Érica T. Prates, Angelica M. Walker, B. Kirtley Amos, Alan E. Mast, Amy C. Justice, Bruce J. Aronow, Daniel Jacobson
Software Mentions: 1
Published: over 4 years ago

10.1186/s12863-021-00973-4

Comparative transcriptome analysis of Alpinia oxyphylla Miq. reveals tissue-specific expression of flavonoid biosynthesis genes
Cited by: 9
Author(s): Lin Yuan, Kun Pan, Yonghui Li, Bo Yi, Bingmiao Gao
Software Mentions: 1
Published: over 3 years ago

10.7554/eLife.07125

The acinar differentiation determinant PTF1A inhibits initiation of pancreatic ductal adenocarcinoma
Cited by: 117
Author(s): Nathan M. Krah, Jean–Paul De La O, Galvin H. Swift, Chinh Q. Hoang, Spencer G. Willet, Fong Chen Pan, Gabriela M Cash, Mary P. Bronner, Christopher V.E. Wright, Raymond J. MacDonald, L. Charles Murtaugh
Software Mentions: 1
Published: over 9 years ago

10.7554/eLife.64330

SARS-CoV-2 suppresses anticoagulant and fibrinolytic gene expression in the lung
Cited by: 40
Author(s): Alan E. Mast, Alisa S. Wolberg, David Gailani, Michael R. Garvin, Christiane Alvarez, J Izaak Miller, Bruce J. Aronow, Daniel Jacobson
Software Mentions: 1
Published: over 3 years ago

10.7554/eLife.51002

Hidden long-range memories of growth and cycle speed correlate cell cycles in lineage trees
Cited by: 18
Author(s): Erika E Kuchen, Nils B. Becker, Nina Claudino, Thomas Höfer
Software Mentions: 1
Published: almost 5 years ago

10.7554/eLife.64250

Stretch-activated ion channels identified in the touch-sensitive structures of carnivorous Droseraceae plants
Cited by: 40
Author(s): Carl Procko, Swetha E. Murthy, William T Keenan, Seyed Ali Reza Mousavi, Tsegaye Dabi, Adam Coombs, Erik Procko, Lisa Baird, Ardem Patapoutian, Joanne Chory
Software Mentions: 1
Published: over 3 years ago

10.7554/eLife.65735

circPTPN12/miR-21–5 p/∆Np63α pathway contributes to human endometrial fibrosis
Cited by: 17
Author(s): Minmin Song, Guangfeng Zhao, Haixiang Sun, Simin Yao, Zhenhua Zhou, Pengju Jiang, Qianwen Wu, Hui Zhu, Huiyan Wang, Chenyan Dai, Jingmei Wang, Ruotian Li, Yun Cao, Haining Lv, Dan Liŭ, Jianwu Dai, Yan Zhou, Yali Hu
Software Mentions: 1
Published: over 3 years ago

10.7554/eLife.46012

CCN1 interlinks integrin and hippo pathway to autoregulate tip cell activity
Cited by: 34
Author(s): Myo-Hyeon Park, Ae kyung Kim, Sarala Manandhar, Su-Young Oh, Gil-Jin Jang, Kang Li, Dongwon Lee, Do Young Hyeon, Sunhee Lee, Hye-Eun Lee, Tae‐Lin Huh, Sang Heon Suh, Daehee Hwang, Kyunghee Byun, Hae-Chul Park, You Mie Lee
Software Mentions: 1
Published: over 5 years ago

10.7554/eLife.59469

Adrenergic activation modulates the signal from the Reissner fiber to cerebrospinal fluid-contacting neurons during development
Cited by: 20
Author(s): Yasmine Cantaut-Belarif, Adeline Orts-Del’Immagine, Margot Penru, Guillaume Pézeron, Claire Wyart, Pierre-Luc Bardet
Software Mentions: 1
Published: about 4 years ago

10.7554/eLife.28415

Single-cell transcriptome analysis of avian neural crest migration reveals signatures of invasion and molecular transitions
Cited by: 54
Author(s): Jason A. Morrison, Rebecca McLennan, Lauren A. Wolfe, Madelaine Gogol, Samuel R. Meier, Mary Cathleen McKinney, Jessica M. Teddy, Laura Holmes, Craig L. Semerad, Andrew Box, Hua Li, Kathryn Hall, Anoja Perera, Paul M. Kulesa
Software Mentions: 1
Published: almost 7 years ago

10.7554/eLife.50346

Disruption of entire Cables2 locus leads to embryonic lethality by diminished Rps21 gene expression and enhanced p53 pathway
Cited by: 2
Author(s): Tra Thi Huong Dinh, Hiroyoshi Iseki, Seiya Mizuno, Saori Iijima-Mizuno, Yoko Tanimoto, Yoko Daitoku, Kayoko Kato, Yuko Hamada, Ammar Shaker Hamed Hasan, Hayate Suzuki, Katsuyuki Murata, Masafumi Muratani, Masatsugu Ema, Jun-Dal Kim, Junji Ishida, Akiyoshi Fukamizu, Mitsuyasu Kato, Satoru Takahashi, Ken‐ichi Yagami, Valerie Wilson, Ruth M. Arkell, Fumihiro Sugiyama
Software Mentions: 1
Published: over 3 years ago

10.7554/eLife.40969

Chromatin mapping identifies BasR, a key regulator of bacteria-triggered production of fungal secondary metabolites
Cited by: 41
Author(s): Juliane Fischer, Sebastian Müller, Tina Netzker, Nils Jäger, Agnieszka Gacek‐Matthews, Kirstin Scherlach, Maria C. Stroe, María García‐Altares, Francesco Pezzini, Hanno Schoeler, Michael Reichelt, Jonathan Gershenzon, Mario K. C. Krespach, Ekaterina Shelest, Volker Schroeckh, Vito Valiante, Thorsten Heinzel, Christian Hertweck, Joseph Strauss, Axel A. Brakhage
Software Mentions: 1
Published: about 6 years ago

10.7554/eLife.52613

Cell-type diversity and regionalized gene expression in the planarian intestine
Cited by: 31
Author(s): David J. Forsthoefel, Nicholas Cejda, Umair W Khan, Phillip A. Newmark
Software Mentions: 1
Published: over 4 years ago

10.7554/eLife.63938

Volatile DMNT directly protects plants against Plutella xylostella by disrupting the peritrophic matrix barrier in insect midgut
Cited by: 21
Author(s): Chen Chen, Hongyi Chen, Shenghong Huang, Tao‐Shan Jiang, Chuanhong Wang, Zhen Tao, Chen He, Qingfeng Tang, Peijin Li
Software Mentions: 1
Published: almost 4 years ago

10.7554/eLife.22054

Transcriptome analysis illuminates the nature of the intracellular interaction in a vertebrate-algal symbiosis
Cited by: 40
Author(s): John A. Burns, Huanjia Zhang, Elizabeth M. Hill, Eun-Soo Kim, Ryan Kerney
Software Mentions: 1
Published: over 7 years ago

10.7554/eLife.05462

Dosage compensation can buffer copy-number variation in wild yeast
Cited by: 106
Author(s): James Hose, Chris Mun Yong, Maria Sardi, Zhishi Wang, Michael A. Newton, Audrey P. Gasch
Software Mentions: 1
Published: over 9 years ago

10.7554/eLife.38675

Changes to social feeding behaviors are not sufficient for fitness gains of the Caenorhabditis elegans N2 reference strain
Cited by: 31
Author(s): Yuehui Zhao, Lijiang Long, Wen Xu, Richard F. Campbell, Edward Large, Joshua S. Greene, Patrick T. McGrath
Software Mentions: 1
Published: about 6 years ago

10.7554/eLife.63502

Longitudinal high-throughput TCR repertoire profiling reveals the dynamics of T-cell memory formation after mild COVID-19 infection
Cited by: 88
Author(s): Anastasia A. Minervina, Ekaterina A. Komech, Aleksei Titov, Meriem Bensouda Koraichi, Elisa Rosati, Ilgar Z. Mamedov, André Franke, Grigory A. Efimov, Dmitriy M. Chudakov, Thierry Mora, Aleksandra M. Walczak, Yuri B Lebedev, Mikhail V. Pogorelyy
Software Mentions: 1
Published: almost 4 years ago

Projects: bioconductor: edgeR

Papers Mentioning edgeR 6,568