bioconductor: edgeR | Projects | Ecosyste.ms: Papers

10.7150/jca.46084

UXT antisense RNA 1 sever as a novel prognostic long non-coding RNA in early stage pancreatic ductal adenocarcinoma patients after receiving pancreaticoduodenectomy
Cited by: 1
Author(s): Xiwen Liao, Rui Huang, Xiangkun Wang, Ketuan Huang, Chengkun Yang, Xin Zhou, Chuangye Han, Hao Su, Xinping Ye, Kang Liu, Guangzhi Zhu, Tao Peng
Software Mentions: 1
Published: almost 4 years ago

10.3389/fphys.2021.687654

Airway Epithelial Cells Drive Airway Smooth Muscle Cell Phenotype Switching to the Proliferative and Pro-inflammatory Phenotype
Cited by: 6
Author(s): Michael J. O’Sullivan, Jinho Jang, Alice Panariti, Amina Bedrat, Gijs Ijpma, Bernardo Lemos, J. A. Park, Anne‐Marie Lauzon, James G. Martin
Software Mentions: 1
Published: over 3 years ago

10.3390/microorganisms8020278

Differential Potential of Phytophthora capsici Resistance Mechanisms to the Fungicide Metalaxyl in Peppers
Cited by: 12
Author(s): Weiyan Wang, Xiao Liu, Tao Han, Kunyuan Li, Yang Qu, Zhimou Gao
Software Mentions: 1
Published: almost 5 years ago

10.3389/fphys.2017.00056

Increased Hemodynamic Load in Early Embryonic Stages Alters Endocardial to Mesenchymal Transition
Cited by: 27
Author(s): Madeline Midgett, Clàudia López, Larry L. David, Alina Maloyan, Sandra Rugonyi
Software Mentions: 1
Published: almost 8 years ago

10.3389/fphys.2018.00429

Circulating miRNAs as Putative Biomarkers of Exercise Adaptation in Endurance Horses
Cited by: 9
Author(s): Katia Cappelli, Stefano Capomaccio, A. Viglino, Maurizio Silvestrelli, Francesca Beccati, Livia Moscati, Elisabetta Chiaradia
Software Mentions: 1
Published: over 6 years ago

10.3389/fphys.2016.00170

Gene Expression Changes during the Gummosis Development of Peach Shoots in Response to Lasiodiplodia theobromae Infection Using RNA-Seq
Cited by: 22
Author(s): Lei Gao, Yuting Wang, Zhi Li, He Zhang, Junli Ye, Guohuai Li
Software Mentions: 1
Published: over 8 years ago

10.3389/fphys.2020.579296

Extracellular Vesicles From High Glucose-Treated Podocytes Induce Apoptosis of Proximal Tubular Epithelial Cells
Cited by: 9
Author(s): Ying Huang, Ruizhao Li, Li Zhang, Yuanhan Chen, Wei Dong, Xingchen Zhao, Huan Yang, Shu Zhang, Zhiyong Xie, Zhiming Ye, Weidong Wang, Chunling Li, Zhilian Li, Shuangxin Liu, Zheng Dong, Xueqing Yu, Xinling Liang
Software Mentions: 1
Published: about 4 years ago

10.6026/97320630014153

Biomarker Identification from RNA-Seq Data using a Robust Statistical Approach
Cited by: 9
Author(s): Zobaer Akond, Munirul Alam, Md. Nurul Haque Mollah
Software Mentions: 1
Published: over 6 years ago

10.1111/jcmm.14048

MCLPMDA: A novel method for miRNA-disease association prediction based on matrix completion and label propagation
Cited by: 50
Author(s): Shengsheng Yu, Cheng Liang, Qiu Xiao, Guanghui Li, Pingjian Ding, Jiawei Luo
Software Mentions: 1
Published: almost 6 years ago

10.3390/microorganisms8030314

Molecular Mechanisms Underpinning Aggregation in Acidiphilium sp. C61 Isolated from Iron-Rich Pelagic Aggregates
Cited by: 4
Author(s): Qianqian Li, Rebecca E. Cooper, Carl‐Eric Wegner, Kirsten Küsel
Software Mentions: 1
Published: over 4 years ago

10.1111/jcmm.14567

MicroRNA‐transcriptome networks in whole blood and monocytes of women undergoing preterm labour
Cited by: 12
Author(s): Alison G. Paquette, Oksana Shynlova, Xiaogang Wu, Mark Kibschull, Kai Wang, Nathan D. Price, Stephen J. Lye
Software Mentions: 1
Published: over 5 years ago

10.1111/jcmm.14627

Long non‐coding RNA LINC01225 promotes proliferation, invasion and migration of gastric cancer via Wnt/β‐catenin signalling pathway
Cited by: 13
Author(s): Ying Xü, Guohua Zhang, Chen Zou, Wenliang Qi, Zhigang Gong, Guoliang Zhang, Guansheng Ma, Wenbo Zhang, Pengcheng Jiang
Software Mentions: 1
Published: about 5 years ago

10.3389/fphar.2021.647084

Research on the Species Difference of the Hepatotoxicity of Medicine Based on Transcriptome
Cited by: 11
Author(s): Ziying Xu, Qianjun Kang, Zihui Yu, Lichun Tian, Jingxuan Zhang, Ting Wang
Software Mentions: 1
Published: over 3 years ago

10.3389/fphar.2018.00619

Antibacterial Activity and Mechanism of Action of Aspidinol Against Multi-Drug-Resistant Methicillin-Resistant Staphylococcus aureus
Cited by: 24
Author(s): Xin Hua, Qin Yang, Wanjiang Zhang, Zhimin Dong, Shen-Ye Yu, Štefan Schwarz, Siguo Liu
Software Mentions: 1
Published: over 6 years ago

10.1111/jcmm.14719

Systematic construction and validation of an immune prognostic model for lung adenocarcinoma
Cited by: 43
Author(s): Chenghan Luo, Mengyuan Lei, Yixia Zhang, Qian Zhang, Lifeng Li, Jingyao Lian, Shasha Li, Liping Wang, Guofu Pi
Software Mentions: 1
Published: almost 5 years ago

10.3389/fphar.2020.621054

HIF Prolyl Hydroxylase Inhibitors for COVID-19 Treatment: Pros and Cons
Cited by: 17
Author(s): Andrey Poloznikov, Stepan Nersisyan, Dmitry M. Hushpulian, Eliot H. Kazakov, Alexander G. Tonevitsky, С. В. Казаков, В.И. Вечорко, С. В. Никулин, J. A. Makarova, Irina G. Gazaryan
Software Mentions: 1
Published: almost 4 years ago

10.3390/microorganisms9081626

Genetic Responses of Metabolically Active Limnospira indica Strain PCC 8005 Exposed to γ-Radiation during Its Lifecycle
Cited by: 1
Author(s): Anu Yadav, Laurens Maertens, Tim Meese, Filip Van Nieuwerburgh, Mohamed Mysara, Natalie Leys, Ann Cuypers, Paul Janssen
Software Mentions: 1
Published: over 3 years ago

10.1111/jcmm.15090

Hedgehog signalling mediates drug resistance through targeting TAP1 in hepatocellular carcinoma
Cited by: 22
Author(s): Xiaotian Zhou, Jia Ding, Hui‐Yan Li, Jie‐Liang Zuo, Shengyang Ge, Hongyan Jia, Jian Wu
Software Mentions: 1
Published: over 4 years ago

10.1111/jcmm.15161

LncRNA ADAMTS9‐AS2 suppresses the proliferation of gastric cancer cells and the tumorigenicity of cancer stem cells through regulating SPOP
Cited by: 18
Author(s): Feiran Wang, Chong Tang, Dong Xu, Yijie Tang, Yasu Jiang, Xuesong Gao, Jiacheng Xu
Software Mentions: 1
Published: over 4 years ago

10.3389/fphar.2019.00150

Analysis of lncRNA-Mediated ceRNA Crosstalk and Identification of Prognostic Signature in Head and Neck Squamous Cell Carcinoma
Cited by: 27
Author(s): Yunbao Pan, Guohong Liu, Dujuan Wang, Yirong Li
Software Mentions: 1
Published: over 5 years ago

10.3389/fphar.2019.00986

Transcriptional Analysis of the Effects of Gambogic Acid and Neogambogic Acid on Methicillin-Resistant Staphylococcus aureus
Cited by: 13
Author(s): Xin Hua, Yue Jia, Qin Yang, Wanjiang Zhang, Zhimin Dong, Siguo Liu
Software Mentions: 1
Published: about 5 years ago

10.3389/fphar.2021.607379

17β-Estradiol Promotes Apoptosis of HepG2 Cells Caused by Oxidative Stress by Increasing Foxo3a Phosphorylation
Cited by: 5
Author(s): Yusheng Guo, Xiangsheng Cai, Hong-Yang Lu, Qiqi Li, Ying Zheng, Zefang Lin, Zexiong Cheng, Maoxiang Yang, Li Zhang, Lei Xiang, Xiaorong Yang
Software Mentions: 1
Published: over 3 years ago

10.3389/fphar.2020.529553

The Target MicroRNAs and Potential Underlying Mechanisms of Yiqi-Bushen-Tiaozhi Recipe against‐Non-Alcoholic Steatohepatitis
Cited by: 9
Author(s): Hong Wang, Songsong Li, Yan Cai, Tingting Zhang, Qingrou Yang, Beihui He, Jianshun Yu, Zhiyun Chen
Software Mentions: 1
Published: about 4 years ago

10.1111/jcmm.15242

Characterization of the prognostic values and response to immunotherapy/chemotherapy of Krüppel‐like factors in prostate cancer
Cited by: 20
Author(s): Jialin Meng, Xiaofan Lu, Yu Jie Zhou, Meng Zhang, Lei Gao, Shenglin Gao, Fangrong Yan, Chaozhao Liang
Software Mentions: 1
Published: over 4 years ago

10.1111/jcmm.15244

Analysis of deep sequencing exosome‐microRNA expression profile derived from CP‐II reveals potential role of gga‐miRNA‐451 in inflammation
Cited by: 12
Author(s): Yabo Zhao, Yali Fu, Meiling Zou, Yingfei Sun, Xun Yin, Liangjie Niu, Yanzhang Gong, Xiuli Peng
Software Mentions: 1
Published: over 4 years ago

10.3389/fphar.2020.584450

IQGAP3 Overexpression Correlates With Poor Prognosis and Radiation Therapy Resistance in Breast Cancer
Cited by: 10
Author(s): Xin Hua, Zhi‐Qing Long, Lanwei Guo, Wen Wen, Xin Huang, Wen Zhang
Software Mentions: 1
Published: almost 4 years ago

10.3389/fonc.2019.01348

7-lncRNA Assessment Model for Monitoring and Prognosis of Breast Cancer Patients: Based on Cox Regression and Co-expression Analysis
Cited by: 32
Author(s): Huayao Li, Chundi Gao, Lijuan Liu, Jing Zhuang, Jing Yang, Cun Liu, Chao Zhou, Fubin Feng
Software Mentions: 1
Published: almost 5 years ago

10.3389/fonc.2017.00135

Ror2 Signaling and Its Relevance in Breast Cancer Progression
Cited by: 38
Author(s): Michaela Bayerlová, Kerstin Menck, Florian Klemm, Alexander Wolff, Tobias Pukrop, Claudia R. Binder, Tim Beißbarth, Annalen Bleckmann
Software Mentions: 1
Published: over 7 years ago

10.3389/fonc.2019.00448

Integrated Bioinformatic Analysis of a Competing Endogenous RNA Network Reveals a Prognostic Signature in Endometrial Cancer
Cited by: 20
Author(s): Leilei Xia, Ye Wang, Meng Qi, Xiaoling Su, Jizi Shen, Jing Wang, Haiwei He, Biwei Wen, Caihong Zhang, Man Xu
Software Mentions: 1
Published: over 5 years ago

10.1093/bioinformatics/btw022

The TraDIS toolkit: sequencing and analysis for dense transposon mutant libraries
Cited by: 158
Author(s): Lars Barquist, Matthew Mayho, Carla Cummins, Amy K. Cain, Christine J. Boinett, Andrew J. Page, Gemma C. Langridge, Michael A. Quail, Jacqueline A. Keane, Julian Parkhill
Software Mentions: 1
Published: almost 9 years ago

10.1186/s40246-021-00308-5

High heterogeneity undermines generalization of differential expression results in RNA-Seq analysis
Cited by: 15
Author(s): Weitong Cui, Huaru Xue, Lei Wei, Jinghua Jin, Xuewen Tian, Qinglu Wang
Software Mentions: 1
Published: almost 4 years ago

10.3389/fonc.2021.587548

A 15-Gene Signature and Prognostic Nomogram for Predicting Overall Survival in Non-Distant Metastatic Oral Tongue Squamous Cell Carcinoma
Cited by: 3
Author(s): Muyuan Liu, Litian Tong, Bin Liang, Xuhong Song, Lingzhu Xie, Hanwei Peng, Dongyang Huang
Software Mentions: 1
Published: over 3 years ago

10.3389/fonc.2021.687208

LINC00346 Sponges miR-30c-2-3p to Promote the Development of Lung Adenocarcinoma by Targeting MYBL2 and Regulating CELL CYCLE Signaling Pathway
Cited by: 10
Author(s): Qinying Xu, Zuo-Feng Xu, Kai Zhu, Jinlan Lin, Bo Ye
Software Mentions: 1
Published: about 3 years ago

10.3390/microorganisms9030652

In-Situ Metatranscriptomic Analyses Reveal the Metabolic Flexibility of the Thermophilic Anoxygenic Photosynthetic Bacterium Chloroflexus aggregans in a Hot Spring Cyanobacteria-Dominated Microbial Mat
Cited by: 11
Author(s): Shigeru Kawai, Joval N. Martinez, Mads Lichtenberg, Erik Trampe, Michael Kühl, Marcus Tank, Shin Haruta, Arisa Nishihara, Satoshi Hanada, Vera Thiel
Software Mentions: 1
Published: over 3 years ago

10.1111/jcmm.16381

Theragnostic chromosomal rearrangements in treatment‐naive pancreatic ductal adenocarcinomas obtained via endoscopic ultrasound
Cited by: 0
Author(s): Stephen J. Murphy, Michael J. Levy, James B. Smadbeck, Giannoula Karagouga, Alexa McCune, Frances Harris, Julia Udell, Sarah H. Johnson, Sarah E. Kerr, John C. Cheville, Benjamin R. Kipp, George Vasmatzis, Ferga C. Gleeson
Software Mentions: 1
Published: over 3 years ago

10.3390/microorganisms7120634

Transcriptomic Analysis of Viable but Non-Culturable Escherichia coli O157:H7 Formation Induced by Low Temperature
Cited by: 16
Author(s): Junliang Zhong, Xihong Zhao
Software Mentions: 1
Published: almost 5 years ago

10.3389/fonc.2021.699625

Circular RNA hsa_circ_0007507 May Serve as a Biomarker for the Diagnosis and Prognosis of Gastric Cancer
Cited by: 5
Author(s): Weiwei Zhang, Ming Zheng, Shan Kong, Xian Li, Shuting Meng, Xudong Wang, Feng Wang, Chenxue Tang, Shaoqing Ju
Software Mentions: 1
Published: about 3 years ago

10.1111/jcmm.16760

The subtype‐specific molecular function of <i>SPDEF</i> in breast cancer and insights into prognostic significance
Cited by: 4
Author(s): Ting Ye, Jingyuan Li, June Feng, Jinglan Guo, Xue Wan, Dan Xie, Jinbo Liu
Software Mentions: 1
Published: over 3 years ago

10.3389/fonc.2021.736620

A Phase II Trial of Adjuvant Durvalumab Following Trimodality Therapy for Locally Advanced Esophageal and Gastroesophageal Junction Adenocarcinoma: A Big Ten Cancer Research Consortium Study
Cited by: 20
Author(s): Hirva Mamdani, Bryan J. Schneider, Susan M. Perkins, Heather N. Burney, Pashtoon Murtaza Kasi, Laith Abushahin, Thomas J. Birdas, Kenneth A. Kesler, Tracy M. Watkins, Sunil Badve, Milan Radovich, Shadia I. Jalal
Software Mentions: 1
Published: about 3 years ago

10.1111/jcmm.16700

LncRNA PVT1 promotes the progression of ovarian cancer by activating TGF‐β pathway via miR‐148a‐3p/AGO1 axis
Cited by: 13
Author(s): Yuxian Wu, Wenqian Gu, Xiao Han, Zhendong Jin
Software Mentions: 1
Published: over 3 years ago

10.1186/s12974-020-01964-5

Oligodendrocyte-specific Argonaute profiling identifies microRNAs associated with experimental autoimmune encephalomyelitis
Cited by: 8
Author(s): Qin Ma, Atsuko Matsunaga, Brenda Ho, Jorge R. Oksenberg, Alessandro Didonna
Software Mentions: 1
Published: about 4 years ago

10.1111/jcmm.16825

MicroRNA‐205‐5p targets E2F1 to promote autophagy and inhibit pulmonary fibrosis in silicosis through impairing SKP2‐mediated Beclin1 ubiquitination
Cited by: 7
Author(s): Qian Qin, Qinghua Ma, Bin Wang, Qingqiang Qian, Changsong Zhao, Feng Fang, Xiaona Dong
Software Mentions: 1
Published: over 3 years ago

10.3389/fonc.2020.581985

Bioinformatic Analysis Identifies Potential Key Genes in the Pathogenesis of Melanoma
Cited by: 9
Author(s): Yanjie Han, Xinxin Li, Jiliang Yan, Chunyan Ma, Xin Wang, Hong Pan, Xiaoli Zheng, Zhen Zhang, Biao Gao, Xin‐Ying Ji
Software Mentions: 1
Published: about 4 years ago

10.3389/fonc.2021.626858

Genome-Wide Analyses of Prognostic and Therapeutic Alternative Splicing Signatures in Bladder Urothelial Carcinoma
Cited by: 1
Author(s): Zhongru Fan, Zhe Zhang, Chiyuan Piao, Zhuona Liu, Ze‐Shu Wang, Chuize Kong
Software Mentions: 1
Published: over 3 years ago

10.1093/bioinformatics/btw334

Integrated gene set analysis for microRNA studies
Cited by: 23
Author(s): Francisco García‐García, Joaquín Panadero, Joaquín Dopazo, David Montaner
Software Mentions: 1
Published: over 8 years ago

10.3389/fonc.2020.00850

CircCSPP1 Functions as a ceRNA to Promote Colorectal Carcinoma Cell EMT and Liver Metastasis by Upregulating COL1A1
Cited by: 19
Author(s): Qingyuan Wang, Li Shi, Kui Shi, Bo Yuan, Gang Cao, Chenchen Kong, Jun Fu, Zhongsong Man, Xu Li, Xuanfeng Zhang, Yifei Feng, Xinglu Jiang, Xinhui Zhang, Jun Yan, Xiaohu Wu, Yueming Sun
Software Mentions: 1
Published: over 4 years ago

10.3389/fimmu.2021.705253

Targeted Transcriptomics of Frog Virus 3 in Infected Frog Tissues Reveal Non-Coding Regulatory Elements and microRNAs in the Ranaviral Genome and Their Potential Interaction with Host Immune Response
Cited by: 5
Author(s): Yun Tian, Collins N. Khwatenge, Jiuyi Li, Francisco De Jesús Andino, Jacques Robert, Yongming Sang
Software Mentions: 1
Published: over 3 years ago

10.3389/fimmu.2019.00265

Transcriptome Profiles of Human Visceral Adipocytes in Obesity and Colorectal Cancer Unravel the Effects of Body Mass Index and Polyunsaturated Fatty Acids on Genes and Biological Processes Related to Tumorigenesis
Cited by: 23
Author(s): Manuela Del Cornò, Antonella Baldassarre, Enrica Calura, Lucia Conti, Paolo Martini, Chiara Romualdi, Rosaria Varı́, Beatrice Scazzocchio, Massimo D’Archivio, Andrea Masotti, Sandra Gessani
Software Mentions: 1
Published: almost 6 years ago

10.3390/microorganisms9051065

Deletion of the PA4427-PA4431 Operon of Pseudomonas aeruginosa PAO1 Increased Antibiotics Resistance and Reduced Virulence and Pathogenicity by Affecting Quorum Sensing and Iron Uptake
Cited by: 1
Author(s): Liuhong Shen, Lang Gao, Mengjiao Yang, Jian Zhang, Yulu Wang, Yongdong Feng, Liping Wang, Shiwei Wang
Software Mentions: 1
Published: over 3 years ago

10.3389/fimmu.2014.00396

RNA-seq Transcriptional Profiling of Peripheral Blood Leukocytes from Cattle Infected with Mycobacterium bovis
Cited by: 48
Author(s): Kirsten E. McLoughlin, Nicolas C. Nalpas, Kévin Rue-Albrecht, John A. Browne, David A. Magee, Kate E. Killick, Stephen D. E. Park, Karsten Hokamp, Kieran G. Meade, Cliona O’Farrelly, Eamonn Gormley, Stephen V. Gordon, David E. MacHugh
Software Mentions: 1
Published: about 10 years ago

10.3390/jcm8070963

Distinct Profiles of Cell-Free MicroRNAs in Plasma of Veterans with Post-Traumatic Stress Disorder
Cited by: 15
Author(s): Min Young Lee, David Baxter, Kelsey Scherler, Taek‐Kyun Kim, Xiaogang Wu, Duna Abu‐Amara, Janine D. Flory, Rachel Yehuda, Charles R. Marmar, Marti Jett, Inyoul Lee, Kai Wang, Leroy Hood
Software Mentions: 1
Published: over 5 years ago

10.3390/jcm8091440

Surface Pre-Reacted Glass Filler Contributes to Tertiary Dentin Formation through a Mechanism Different Than That of Hydraulic Calcium-Silicate Cement
Cited by: 13
Author(s): Masakazu Okamoto, Muslim Ali, Shungo Komichi, Masakatsu Watanabe, Haozhang Huang, Yuki Ito, Jiro Miura, Yujiro Hirose, Manabu Mizuhira, Yusuke Takahashi, Daisuke Okuzaki, Shigetada Kawabata, Satoshi Imazato, Mikako Hayashi
Software Mentions: 1
Published: about 5 years ago

10.3390/microorganisms9081560

Transcriptome Analysis of Durusdinium Associated with the Transition from Free-Living to Symbiotic
Cited by: 3
Author(s): Ikuko Yuyama, Naoto Ugawa, Takeji Hashimoto
Software Mentions: 1
Published: over 3 years ago

10.3389/fimmu.2020.01240

Neonatal Diet Impacts Circulatory miRNA Profile in a Porcine Model
Cited by: 4
Author(s): Laura E. Carr, Anne K. Bowlin, Ahmed A. Elolimy, Stephanie D. Byrum, Charity L. Washam, Christopher E. Randolph, Stewart L. MacLeod, Laxmi Yeruva
Software Mentions: 1
Published: over 4 years ago

10.3389/fimmu.2020.01602

Systemic Sclerosis Perturbs the Architecture of the Immunome
Cited by: 10
Author(s): Bhairav Paleja, Andrea Low, Pavanish Kumar, Suzan Saidin, Ahmad Lajam, Sharifah Nur Hazirah, Camillus Chua, Lai Li Yun, Salvatore Albani
Software Mentions: 1
Published: over 4 years ago

10.3390/jcm10102110

Plasma Exosomal miRNA Levels after Radiotherapy Are Associated with Early Progression and Metastasis of Cervical Cancer: A Pilot Study
Cited by: 5
Author(s): Oyeon Cho, Do Wan Kim, J.Y. Cheong
Software Mentions: 1
Published: over 3 years ago

10.3390/jcm10112227

miRNAs and Genes Involved in the Interplay between Ocular Hypertension and Primary Open-Angle Glaucoma. Oxidative Stress, Inflammation, and Apoptosis Networks
Cited by: 16
Author(s): J. Raga-Cervera, José Miguel Bolarín, José María Millán, Manuel García-Medina, Laia Pedrola, Javier Abellán-Abenza, Mar Valero-Velló, Silvia M. Sanz-González, José Enrique O’Connor, David Galarreta, Elena Bendala-Tufanisco, Aloma Mayordomo-Febrer, María Dolores Pinazo-Durán, Vicente Zanón‐Moreno
Software Mentions: 1
Published: over 3 years ago

10.3389/fimmu.2019.02888

Mycobacterium abscessus—Bronchial Epithelial Cells Cross-Talk Through Type I Interferon Signaling
Cited by: 15
Author(s): Chongxu Zhang, Huda Asif, Gregory E. Holt, Anthony J. Griswold, Michael Campos, P.A. Bejarano, Nevis Fregien, Mehdi Mirsaeidi
Software Mentions: 1
Published: almost 5 years ago

10.1186/s12974-019-1527-z

Transcriptome profiling of brain myeloid cells revealed activation of Itgal, Trem1, and Spp1 in western diet-induced obesity
Cited by: 31
Author(s): Hongtian Yang, Leah C. Graham, Alaina M. Reagan, Weronika Grabowska, William H. Schott, Gareth R. Howell
Software Mentions: 1
Published: over 5 years ago

10.3389/fimmu.2020.592569

Helpless Priming Sends CD8+ T Cells on the Road to Exhaustion
Cited by: 23
Author(s): Julia Busselaar, Sun Tian, Hans van Eenennaam, Jannie Borst
Software Mentions: 1
Published: about 4 years ago

10.3389/fimmu.2016.00670

Regulation of Marginal Zone B-Cell Differentiation by MicroRNA-146a
Cited by: 22
Author(s): Jennifer K. King, Nolan Ung, May Paing, Jorge R. Contreras, Michael O. Alberti, Thilini R. Fernando, Kelvin Zhang, Matteo Pellegrini, Dinesh S. Rao
Software Mentions: 1
Published: almost 8 years ago

10.3389/fimmu.2021.729776

The Molecular Mechanism of Multiple Organ Dysfunction and Targeted Intervention of COVID-19 Based on Time-Order Transcriptomic Analysis
Cited by: 15
Author(s): Miao Zou, Xiaoyun Su, Luoying Wang, Xingcheng Yi, Yue Qiu, Xirui Yin, Xuan Zhou, Xinhui Niu, Liuli Wang, Manman Su
Software Mentions: 1
Published: over 3 years ago

10.3389/fimmu.2021.688294

Macrophage Polarization Modulated by Porcine Circovirus Type 2 Facilitates Bacterial Coinfection
Cited by: 6
Author(s): Wen Zhang, Zhendong Fu, Hongyan Yin, Qin Han, Wenhui Fan, Fangkun Wang, Yue Shang
Software Mentions: 1
Published: over 3 years ago

10.1093/bioinformatics/btz754

Computationally predicted gene regulatory networks in molluscan biomineralization identify extracellular matrix production and ion transportation pathways
Cited by: 15
Author(s): Victoria A. Sleight, Philipp Antczak, Francesco Falciani, Melody S. Clark
Software Mentions: 1
Published: about 5 years ago

10.3389/fimmu.2021.703632

A Biological Circuit Involving Mef2c, Mef2d, and Hdac9 Controls the Immunosuppressive Functions of CD4+Foxp3+ T-Regulatory Cells
Cited by: 4
Author(s): Eros Di Giorgio, Liqing Wang, Yan Xiong, Lanette M Christensen, Tatiana Akimova, Rongxiang Han, Arabinda Samanta, Matteo Trevisanut, Claudio Brancolini, Ulf H. Beier, Wayne W. Hancock
Software Mentions: 1
Published: over 3 years ago

10.3390/microorganisms9081591

Metatranscriptomic Analysis of Bacterial Communities on Laundered Textiles: A Pilot Case Study
Cited by: 4
Author(s): Susanne Jacksch, Christoph König, Dominik Kaiser, Mirko Weide, Stefan Ratering, Sylvia Schnell, Markus Egert
Software Mentions: 1
Published: over 3 years ago

10.3389/fimmu.2020.02191

Human Chondrocyte Activation by Toxins From Premolis semirufa, an Amazon Rainforest Moth Caterpillar: Identifying an Osteoarthritis Signature
Cited by: 4
Author(s): Isadora Maria Villas-Boas, Giselle Pidde, Flávio Lichtenstein, Ana Tung Ching Ching, Inácio L.M. Junqueira-de-Azevedo, Carlos DeOcesano-Pereira, Carlos Eduardo Madureira Trufen, Ana Marisa Chudzinski‐Tavassi, Kátia L.P. Morais, Denise V. Tambourgi
Software Mentions: 1
Published: about 4 years ago

10.3389/fimmu.2020.01064

Different Exosomal microRNA Profile in Aquaporin-4 Antibody Positive Neuromyelitis Optica Spectrum Disorders
Cited by: 7
Author(s): Chen Chen, Yunting Wu, Miaochang Li, Chun-Ping Chu, Yipeng Zhao, Xiaobo Sun, Yuge Wang, Chunxin Liu, Haotian Wu, Xiaonan Zhong, Allan G. Kermode, Lisheng Peng
Software Mentions: 1
Published: over 4 years ago

10.3389/fimmu.2021.722500

Transcriptional Changes in Pulmonary Phagocyte Subsets Dictate the Outcome Following Interaction With The Fungal Pathogen Cryptococcus neoformans
Cited by: 4
Author(s): Ashlee Hawkins, Brenden F. Determann, Benjamin N. Nelson, Karen L. Wozniak
Software Mentions: 1
Published: about 3 years ago

10.3389/fgene.2021.698983

Comparative Transcriptomic Analysis Reveals the Immunosuppressive Targets of Mesalazine in Dextran Sulfate Sodium-Induced Ulcerative Colitis
Cited by: 1
Author(s): Rong Li, Lin Cheng, Qi Wang, Liming Zhou
Software Mentions: 1
Published: over 3 years ago

10.3389/fgene.2021.635599

Comparative Small RNA Profiling and Functional Exploration on Wheat With High- and Low-Cadmium Accumulation
Cited by: 6
Author(s): Yuqing Liu, Xudong Wang, Leyi Yuan, Yuxiang Liu, Tong Shen, Yunhua Zhang
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-019-43998-7

Progressive expression of PPARGC1α is associated with hair miniaturization in androgenetic alopecia
Cited by: 11
Author(s): Brian Ho, Candida Vaz, Srinivas Ramasamy, Elaine Guo Yan Chew, Jameelah Sheik Mohamed, Huma Jaffar, Axel M. Hillmer, Vivek Tanavde, Mei Bigliardi-Qi, Paul L. Bigliardi
Software Mentions: 1
Published: over 5 years ago

10.3389/fgene.2021.667877

Leveraging Methylation Alterations to Discover Potential Causal Genes Associated With the Survival Risk of Cervical Cancer in TCGA Through a Two-Stage Inference Approach
Cited by: 7
Author(s): Jinhui Zhang, Haojie Lu, Shuo Zhang, Ting Wang, Huashuo Zhao, Fengjun Guan, Ping Zeng
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-019-45346-1

Methylation and transcription patterns are distinct in IDH mutant gliomas compared to other IDH mutant cancers
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Author(s): Dusten Unruh, Makda Zewde, Adam Buss, Michael Drumm, Anh Tran, Denise M. Scholtens, Craig Horbinski
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms21249719

The Genome-Wide Impact of Nipblb Loss-of-Function on Zebrafish Gene Expression
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Author(s): M. Spreafico, Eleonora Mangano, Mara Mazzola, Clarissa Consolandi, Roberta Bordoni, Cristina Battaglia, Silvio Bicciato, Anna Marozzi, Anna Pistocchi
Software Mentions: 1
Published: almost 4 years ago

10.1038/s41598-019-45354-1

Adaptive adipose tissue stromal plasticity in response to cold stress and antibody-based metabolic therapy
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Author(s): Joshua C. Chang, Steffen Durinck, Mark Z. Chen, Nadia Martínez‐Martín, Jingli A. Zhang, Isabelle Lehoux, Hong Li, Millicent Lin, Jianguo Wu, Travis W. Bainbridge, James A. Ernst, Sree R. Ramani, Sairupa Paduchuri, Lance Kates, Margaret Solon, Matthew B. Buechler, Alessandra Castiglioni, Minh Thai, Beatrice Breart, Zora Modrušan, Andrew S. Peterson, Shannon J. Turley, Junichiro Sonoda
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms22010364

Multi-Omics Characterization of Inflammatory Bowel Disease-Induced Hyperplasia/Dysplasia in the Rag2−/−/Il10−/− Mouse Model
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Author(s): Qiyuan Han, Thomas J. Y. Kono, Charles G. Knutson, N. Parry, Charles E. Seiler, James G. Fox, Steven R. Tannenbaum, Natalia Tretyakova
Software Mentions: 1
Published: almost 4 years ago

10.1038/s41598-019-45326-5

Genes functioned in kleptoplastids of Dinophysis are derived from haptophytes rather than from cryptophytes
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Author(s): Yuki Hongo, Akinori Yabuki, Katsunori Fujikura, Satoshi Nagai
Software Mentions: 1
Published: over 5 years ago

10.3389/fgene.2020.617872

Transcriptome Analyses Identify an RNA Binding Protein Related Prognostic Model for Clear Cell Renal Cell Carcinoma
Cited by: 8
Author(s): Yue Wu, Wa Xian, Huan Feng, Bintao Hu, Bo Liu, Yang Luan, Yajun Ruan, Xiaohui Liu, Zhuo Liu, Shaogang Wang, Jihong Liu, Tao Wang
Software Mentions: 1
Published: almost 4 years ago

10.3389/fgene.2021.607238

The TP53-Related Signature Predicts Immune Cell Infiltration, Therapeutic Response, and Prognosis in Patients With Esophageal Carcinoma
Cited by: 7
Author(s): Hongpan Zhang, Zheng Huang, Yangguang Song, Zhihao Yang, Qi Shi, Kaige Wang, Zhiyu Zhang, Zheng Lv, Xiaobin Cui, Feng Li
Software Mentions: 1
Published: over 3 years ago

10.3389/fgene.2021.674856

LncRNA SOX2-OT/miR-30d-5p/PDK1 Regulates PD-L1 Checkpoint Through the mTOR Signaling Pathway to Promote Non-small Cell Lung Cancer Progression and Immune Escape
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Author(s): Zhoumiao Chen, Zhao Chun-hua, Shaohua Xu, Qiang Zhang
Software Mentions: 1
Published: over 3 years ago

10.3389/fgene.2020.00273

HSD17B4, ACAA1, and PXMP4 in Peroxisome Pathway Are Down-Regulated and Have Clinical Significance in Non-small Cell Lung Cancer
Cited by: 12
Author(s): Xiuzhi Zhang, Hongmei Yang, Jinzhong Zhang, Fenglan Gao, Liping Dai
Software Mentions: 1
Published: over 4 years ago

10.3389/fgene.2019.00409

Dynamic Transcriptome Analysis Reveals Potential Long Non-coding RNAs Governing Postnatal Pineal Development in Pig
Cited by: 8
Author(s): Yalan Yang, Rong Zhou, Wentong Li, Ying Liu, Yanmin Zhang, Ai Hong, Hua Li, Kui Li
Software Mentions: 1
Published: over 5 years ago

10.3390/microorganisms5010003

Using Network Extracted Ontologies to Identify Novel Genes with Roles in Appressorium Development in the Rice Blast Fungus Magnaporthe oryzae
Cited by: 8
Author(s): Ryan M. Ames
Software Mentions: 1
Published: almost 8 years ago

10.1002/bies.201500192

Lineage-specific genomics: Frequent birth and death in the human genome
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Author(s): Robert S. Young
Software Mentions: 1
Published: over 8 years ago

10.3389/fgene.2016.00191

Epigenetic DNA Methylation Profiling with MSRE: A Quantitative NGS Approach Using a Parkinson's Disease Test Case
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Author(s): Adam G. Marsh, Matthew T. Cottrell, Morton F. Goldman
Software Mentions: 1
Published: about 8 years ago

10.3389/fgene.2020.577000

Exploration of Sorafenib Influences on Gene Expression of Hepatocellular Carcinoma
Cited by: 0
Author(s): Huancheng Wang, Jia Liu
Software Mentions: 1
Published: about 4 years ago

10.1038/s41598-019-46696-6

De novo assembly of the Platycladus orientalis (L.) Franco transcriptome provides insight into the development and pollination mechanism of female cone based on RNA-Seq data
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Author(s): Wei Zhou, Qi Chen, Xiaobing Wang, Tyler O. Hughes, Jing Liu, Xin Zhang
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-46886-2

RNA sequencing analysis revealed the induction of CCL3 expression in human intracranial aneurysms
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Author(s): Tomohiro Aoki, Hirokazu Koseki, Haruka Miyata, Masayoshi Itoh, Hideya Kawaji, Kazuyasu Takizawa, Akitsugu Kawashima, Hiroshi Ujiié, Takashi Higa, Kenzo Minamimura, Toshikazu Kimura, Hidetoshi Kasuya, Kazuhiko Nozaki, Akio Morita, Hirotoshi Sano, Shuh Narumiya
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-46981-4

Analysis of lncRNA-miRNA-mRNA Interactions in Hyper-proliferative Human Pulmonary Arterial Smooth Muscle Cells
Cited by: 9
Author(s): Mahendran Chinnappan, Sumedha Gunewardena, Prabhakar Chalise, Navneet K. Dhillon
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-47016-8

Wx: a neural network-based feature selection algorithm for transcriptomic data
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Author(s): Sung Soo Park, Bonggun Shin, Won Sang Shim, Yuni Choi, Kilsoo Kang, Keunsoo Kang
Software Mentions: 1
Published: over 5 years ago

10.3390/bioengineering8070090

Reengineering Tumor Microenvironment with Sequential Interleukin Delivery
Cited by: 7
Author(s): Marxa L. Figueiredo, Rachel A. Letteri, Delphine Chan‐Seng, Shreya Kumar, Cosette M. Rivera-Cruz, Todd Emrick
Software Mentions: 1
Published: over 3 years ago

10.15252/embr.201948029

SUMOylated SNF2PH promotes variant surface glycoprotein expression in bloodstream trypanosomes
Cited by: 12
Author(s): Andreu Saura, Paula Ana Iribarren, Domingo I. Rojas-Barros, Jean-Mathieu Bart, Diana López‐Farfán, Eduardo Andrés-León, Isabel Vidal-Cobo, Cordula Boehm, Vanina E. Álvarez, Mark C. Field, Miguel Navarro
Software Mentions: 1
Published: about 5 years ago

10.15252/emmm.202012409

Psoriatic skin inflammation is promoted by c‐Jun/AP‐1‐dependent CCL2 and IL‐23 expression in dendritic cells
Cited by: 35
Author(s): Philipp Novoszel, Martin Holcmann, Gabriel Stulnig, Cristiano De Sa Fernandes, Victoria Zyulina, Izabela Borek, Markus Linder, Alexandra Bogusch, Barbara Drobits, Thomas Bauer, Carmen Tam‐Amersdorfer, Patrick M. Brunner, Georg Stary, Latifa Bakiri, Erwin F. Wagner, Herbert Strobl, Maria Sibilia
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-019-47739-8

The role of ESCO2, SALL4 and TBX5 genes in the susceptibility to thalidomide teratogenesis
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Author(s): João Luiz Ellera Gomes, Thayne Woycinck Kowalski, Lucas Rosa Fraga, Gabriel S. Macedo, Maria Teresa Vieira Sanseverino, Lavínia Schüler‐Faccini, Fernanda S.L. Vianna
Software Mentions: 1
Published: over 5 years ago

10.15252/emmm.201606493

Activin promotes skin carcinogenesis by attraction and reprogramming of macrophages
Cited by: 24
Author(s): Maria Antsiferova, Aleksandra Piwko‐Czuchra, Michael Cangkrama, Mateusz S. Wietecha, Dilara Şahin, Katharina Birkner, Valerie C Amann, Mitchell P. Levesque, Daniel Hohl, Reinhard Dummer, Sabine Werner
Software Mentions: 1
Published: almost 8 years ago

10.3390/ijms22020783

MBNL2 Regulates DNA Damage Response via Stabilizing p21
Cited by: 11
Author(s): Jun Cai, Ningchao Wang, Guanglan Lin, Haowei Zhang, Weidong Xie, Yaou Zhang, Ning Xu
Software Mentions: 1
Published: almost 4 years ago

10.15252/emmm.202013524

Menin‐regulated Pbk controls high fat diet‐induced compensatory beta cell proliferation
Cited by: 6
Author(s): Jian Ma, Bowen Xing, Yan Cao, Xin He, Kate E Bennett, Chao Tong, Chiying An, Taylor Hojnacki, Zijie Feng, Sunbin Deng, Sunbin Ling, Gengchen Xie, Yuan Wu, Yue Ren, Ming Yu, Bryson W. Katona, Hongzhe Li, Ali Naji, Xianxin Hua
Software Mentions: 1
Published: over 3 years ago

10.3390/ijms22031237

LncRNA H19-Derived miR-675-5p Accelerates the Invasion of Extravillous Trophoblast Cells by Inhibiting GATA2 and Subsequently Activating Matrix Metalloproteinases
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Author(s): Manabu Ogoyama, Akihide Ohkuchi, Dongqing Zhao, Shigeki Matsubara, Toshihiro Tajima
Software Mentions: 1
Published: almost 4 years ago

10.1038/s41598-019-48806-w

Comparative transcriptome and metabolite profiling of four tissues from Alisma orientale (Sam.) Juzep reveals its inflorescence developmental and medicinal characteristics
Cited by: 4
Author(s): Wenjin Lin, Fengling Sun, Yamin Zhang, Xinlan Xu, Xuehua Lu, Lisha Li, Ruihua Xu
Software Mentions: 1
Published: over 5 years ago

Projects: bioconductor: edgeR

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