bioconductor: edgeR | Projects | Ecosyste.ms: Papers

10.3389/fcimb.2020.00097

RNA-Seq Revealed a Circular RNA-microRNA-mRNA Regulatory Network in Hantaan Virus Infection
Cited by: 64
Author(s): Shuang Lu, Ni Zhu, Weiwei Guo, Xin Wang, Kaiji Li, Jie Yan, Cuiping Jiang, Han Shi-yu, Hanmin Xiang, Xiaohan Wu, Yuanyuan Liu, Hairong Xiong, Liangjun Chen, Zuojiong Gong, Fan Luo, Wei Hou
Software Mentions: 1
Published: over 6 years ago

10.3389/fcimb.2017.00004

Repurposing Approach Identifies Auranofin with Broad Spectrum Antifungal Activity That Targets Mia40-Erv1 Pathway
Cited by: 64
Author(s): Shankar Thangamani, Matthew C. Maland, Haroon Mohammad, Pete E. Pascuzzi, Larisa Avramova, Carla M. Koehler, Tony R. Hazbun, Mohamed N. Seleem
Software Mentions: 1
Published: over 9 years ago

10.3389/fcimb.2020.00066

Isoforms of Cathepsin B1 in Neurotropic Schistosomula of Trichobilharzia regenti Differ in Substrate Preferences and a Highly Expressed Catalytically Inactive Paralog Binds Cystatin
Cited by: 3
Author(s): Hana Dvořáková, Roman Leontovyč, Tomáš Macháček, Anthony J. O’Donoghue, Ondřej Šedo, Zbyněk Zdráhal, Charles S. Craik, Conor R. Caffrey, Petr Horák, Libor Mikeš
Software Mentions: 1
Published: over 6 years ago

10.3389/fcimb.2018.00231

The Stringent Response-Regulated sRNA Transcriptome of Borrelia burgdorferi
Cited by: 20
Author(s): Dan Drecktrah, Laura S. Hall, Philipp Rescheneder, Meghan Lybecker, D. Scott Samuels
Software Mentions: 1
Published: about 8 years ago

10.3389/fncel.2020.566148

Pioglitazone Ameliorates Gentamicin Ototoxicity by Affecting the TLR and STAT Pathways in the Early Postnatal Organ of Corti
Cited by: 3
Author(s): Marijana Sekulic-Jablanovic, Matthew B. Wright, Vesna Petkovic, Daniel Bodmer
Software Mentions: 1
Published: almost 6 years ago

10.5713/ajas.18.0516

Multi-tissue observation of the long non-coding RNA effects on sexually biased gene expression in cattle
Cited by: 3
Author(s): Joon Yoon, Heebal Kim
Software Mentions: 1
Published: about 7 years ago

10.3389/fendo.2021.743155

Identification of mRNA Prognostic Markers for TGCT by Integration of Co-Expression and CeRNA Network
Cited by: 3
Author(s): Fang Zhu, Zhizhong Liu, Qianyin Zhou, Jingyu Fan, Dai Zhou, Xing Liu, Hao Bo, Le Tang, Liqing Fan
Software Mentions: 1
Published: almost 5 years ago

10.3389/fendo.2021.650625

Estrogen Receptor Beta Influences the Inflammatory p65 Cistrome in Colon Cancer Cells
Cited by: 1
Author(s): Rajitha Indukuri, Linnea Hases, Amena Archer, Cecilia Williams
Software Mentions: 1
Published: over 5 years ago

10.3389/fendo.2019.00553

Identification of a New Theca/Interstitial Cell-Specific Gene and Its Biological Role in Growth of Mouse Ovarian Follicles at the Gonadotropin-Independent Stage
Cited by: 6
Author(s): Masato Aoyama, Akira Shiraishi, Shin Matsubara, Kazuyuki Horie, Tomohiro Osugi, Toru Kawada, Keiko Yasuda, Honoo Satake
Software Mentions: 1
Published: about 7 years ago

10.3389/fendo.2018.00574

Leptin Selectively Regulates Nutrients Metabolism in Nile Tilapia Fed on High Carbohydrate or High Fat Diet
Cited by: 33
Author(s): Caizhi Liu, Anbang He, Lei Ning, Yuan Luo, Dongliang Li, Meiling Zhang, Liqiao Chen, Zhen‐Yu Du
Software Mentions: 1
Published: almost 8 years ago

10.3390/nu7085297

Dietary Selenium Levels Affect Selenoprotein Expression and Support the Interferon-γ and IL-6 Immune Response Pathways in Mice
Cited by: 63
Author(s): Petra A. Tsuji, Bradley A. Carlson, Christine B. Anderson, Harold E. Seifried, Dolph L. Hatfield, Michael Howard
Software Mentions: 1
Published: about 11 years ago

10.3389/fendo.2016.00165

Muscle Contraction Induces Acute Hydroxymethylation of the Exercise-Responsive Gene Nr4a3
Cited by: 28
Author(s): Pattarawan Pattamaprapanont, Christian Garde, Odile Fabre, Romain Barrès
Software Mentions: 1
Published: over 9 years ago

10.1186/s13075-021-02623-7

Monocyte transcriptomes from patients with axial spondyloarthritis reveal dysregulated monocytopoiesis and a distinct inflammatory imprint
Cited by: 8
Author(s): Fabian Karow, Biljana Smiljanovic, Joachim R. Grün, Denis Poddubnyy, Fabian Proft, Alice Talpin, Christophe Hue, Anne Boland, Jean‐François Deleuze, Henri‐Jean Garchon, İlkay Ergenç, Ann‐Sophie De Craemer, Ulrike Erben, Thomas Häupl, Dirk Elewaut, Maxime Bréban, Andreas Grützkau, Uta Syrbe
Software Mentions: 1
Published: almost 5 years ago

10.3389/fendo.2021.687586

Metabolic Syndrome Is Associated With Altered mRNA and miRNA Content in Human Circulating Extracellular Vesicles
Cited by: 3
Author(s): Yongxin Li, Yijun Meng, Xiangyang Zhu, André J. van Wijnen, Alfonso Eirin, Lilach O. Lerman
Software Mentions: 1
Published: about 5 years ago

10.3389/fgene.2020.00881

SlGID1a Is a Putative Candidate Gene for qtph1.1, a Major-Effect Quantitative Trait Locus Controlling Tomato Plant Height
Cited by: 4
Author(s): Xiaolin Liu, Wencai Yang, Jing Wang, Ming Yang, Kai Wei, Xiaoyan Liu, Zhengkun Qiu, Tong van Giang, Xiaoxuan Wang, Yanmei Guo, Junming Li, Lei Liu, Jinshuai Shu, Yan Du, Zejun Huang
Software Mentions: 1
Published: about 6 years ago

10.3390/ijms20143582

In Silico Analysis of Gene Expression Change Associated with Copy Number of Enhancers in Pancreatic Adenocarcinoma
Cited by: 12
Author(s): Rajesh Kumar, Sumeet Patiyal, Vinod Kumar, Gandharva Nagpal, Gajendra P. S. Raghava
Software Mentions: 1
Published: about 7 years ago

10.1155/2021/8865133

Analysis of a Methanogen and an Actinobacterium Dominating the Thermophilic Microbial Community of an Electromethanogenic Biocathode
Cited by: 4
Author(s): Hajime Kobayashi, Ryohei Toyoda, Hiroyuki Miyamoto, Yasuhito Nakasugi, Yuki Momoi, Kohei Nakamura, Qian Fu, Haruo Maeda, Takashi Goda, Kôzô Satô
Software Mentions: 1
Published: over 5 years ago

10.1007/s00204-021-03092-2

New insights into the mechanisms underlying 5-fluorouracil-induced intestinal toxicity based on transcriptomic and metabolomic responses in human intestinal organoids
Cited by: 17
Author(s): Daniela Rodrigues, Terezinha de Souza, Luke Coyle, Matteo Piazza, Bram Herpers, Sofia Ferreira, Mian Zhang, Johanna Vappiani, Daniel C. Sévin, Attila Gábor, Anthony M. Lynch, Seung‐Wook Chung, Julio Sáez-Rodríguez, Danyel Jennen, Jos Kleinjans, Theo M. de Kok
Software Mentions: 1
Published: about 5 years ago

10.3389/fgene.2020.00534

Novel Insights Into Triple-Negative Breast Cancer Prognosis by Comprehensive Characterization of Aberrant Alternative Splicing
Cited by: 8
Author(s): Shasha Gong, Zhijian Song, David Ethan Spezia-Lindner, Feilong Meng, Tingting Ruan, Guangzhi Ying, Changhong Lai, Qianqian Wu, Yong Liang
Software Mentions: 1
Published: about 6 years ago

10.3389/fgene.2020.00494

Quantitative Estimation of Oxidative Stress in Cancer Tissue Cells Through Gene Expression Data Analyses
Cited by: 6
Author(s): Liyang Liu, Haining Cui, Ying Xu
Software Mentions: 1
Published: over 6 years ago

10.1002/aps3.1206

Transcriptome analysis of maca (<i>Lepidium meyenii</i> ) root at different developmental stages
Cited by: 3
Author(s): Ruiguang Shang, Pu Yang, Bingyi Wang, Zhihui Zhao
Software Mentions: 1
Published: almost 8 years ago

10.1007/s00253-021-11309-8

Exploring the molecular content of CHO exosomes during bioprocessing
Cited by: 16
Author(s): Christoph Keysberg, Oliver Hertel, Louise Schelletter, Busche Tobias, Chiara Sochart, Jörn Kalinowski, Raimund Hoffrogge, Kerstin Otte, Thomas Noll
Software Mentions: 1
Published: over 5 years ago

10.3389/fgene.2019.00929

Transcriptome Analysis Reveals That Alfalfa Promotes Rumen Development Through Enhanced Metabolic Processes and Calcium Transduction in Hu Lambs
Cited by: 9
Author(s): Bin Yang, Hongwei Chen, Jiawen Cao, Bo He, Shanshan Wang, Yang Luo, Jiakun Wang
Software Mentions: 1
Published: almost 7 years ago

10.3389/fimmu.2018.01372

CD19+CD24hiCD38hi B Cells Are Expanded in Juvenile Dermatomyositis and Exhibit a Pro-Inflammatory Phenotype After Activation Through Toll-Like Receptor 7 and Interferon-α
Cited by: 60
Author(s): Christopher Piper, Meredyth G Ll Wilkinson, Claire T. Deakin, G. Otto, S Dowle, Chantal L. Duurland, Stuart Adams, Emiliano Marasco, Elizabeth C. Rosser, Anna Radziszewska, Rita Carsetti, Yiannis Ioannou, Philip L. Beales, Daniel Kelberman, David Isenberg, Claudia Mauri, Kiran Nistala, Lucy R. Wedderburn
Software Mentions: 1
Published: about 8 years ago

10.3390/ijms20174117

Transcriptome Profiling Provides Insight into the Genes in Carotenoid Biosynthesis during the Mesocarp and Seed Developmental Stages of Avocado (Persea americana)
Cited by: 17
Author(s): Yu Ge, Zhihao Cheng, Xiongyuan Si, Wei Ma, Lin Tan, Xiaoping Zang, Bin Wu, Zining Xu, Nan Wang, Zhaoxi Zhou, Xiao Lin, Xiangshu Dong, Rulin Zhan
Software Mentions: 1
Published: about 7 years ago

10.1128/AEM.01913-17

Interactions of Salmonella enterica Serovar Typhimurium and Pectobacterium carotovorum within a Tomato Soft Rot
Cited by: 10
Author(s): Andrée S. George, Clayton E. Cox, Prerak Desai, Steffen Porwollik, Chu Wu, Marcos H. de Moraes, Michael McClelland, Maria T. Brandl, Max Teplitski
Software Mentions: 1
Published: over 8 years ago

10.1128/AEM.00356-20

Microbial Residents of the Atlantis Massif’s Shallow Serpentinite Subsurface
Cited by: 13
Author(s): Shahrzad Motamedi, Beth N. Orcutt, Gretchen L. Früh-Green, Katrina I. Twing, H. Lizethe Pendleton, William J. Brazelton
Software Mentions: 1
Published: over 6 years ago

10.3389/fimmu.2019.02394

IFN-Lambda 3 Mediates Antiviral Protection Against Porcine Epidemic Diarrhea Virus by Inducing a Distinct Antiviral Transcript Profile in Porcine Intestinal Epithelia
Cited by: 35
Author(s): Liang Li, Mei Xue, Fang Fu, Liang Yin, Li Feng, Pinghuang Liu
Software Mentions: 1
Published: almost 7 years ago

10.3390/ijms20194933

Transforming Growth Factor-β1 Selectively Recruits microRNAs to the RNA-Induced Silencing Complex and Degrades CFTR mRNA under Permissive Conditions in Human Bronchial Epithelial Cells
Cited by: 13
Author(s): Nilay Mitash, Fangping Mu, Joshua E Donovan, Michael M. Myerburg, Sarangarajan Ranganathan, Catherine M. Greene, Agnieszka Swiatecka‐Urban
Software Mentions: 1
Published: almost 7 years ago

10.3389/fimmu.2020.594243

Effects of In Vivo Gluten Challenge on PBMC Gene Expression Profiles in Diet Treated Celiac Disease
Cited by: 4
Author(s): Dawit A. Yohannes, Andrea de Kauwe, Katri Kaukinen, Kalle Kurppa, Markku Mäki, Robert P. Anderson, Sten Linnarsson, Dario Greco, Päivi Saavalainen
Software Mentions: 1
Published: over 5 years ago

10.1128/AEM.00708-20

Short- and Long-Term Transcriptomic Responses of Escherichia coli to Biocides: a Systems Analysis
Cited by: 11
Author(s): Beatriz Merchel Piovesan Pereira, Xiaokang Wang, Ilias Tagkopoulos
Software Mentions: 1
Published: about 6 years ago

10.3390/ijms20205172

Novel Pituitary Actions of Epidermal Growth Factor: Receptor Specificity and Signal Transduction for UTS1, EGR1, and MMP13 Regulation by EGF
Cited by: 5
Author(s): Qiongyao Hu, Shaohua Xu, Ya Cheng, Jingyi Jia, Lingling Zhou, Guangfu Hu
Software Mentions: 1
Published: almost 7 years ago

10.3389/fmicb.2015.01262

Identification of Genetic Modules Mediating the Jekyll and Hyde Interaction of Dinoroseobacter shibae with the Dinoflagellate Prorocentrum minimum
Cited by: 42
Author(s): Hui Wang, Jürgen Tomasch, Victoria Michael, Sabin Bhuju, Michael Jarek, Jörn Petersen, Irene Wagner‐Döbler
Software Mentions: 1
Published: almost 11 years ago

10.3389/fmicb.2018.03266

Multi-Method Characterization of the Human Circulating Microbiome
Cited by: 103
Author(s): Emma Whittle, Martin O. Leonard, Rebecca D Harrison, Timothy W. Gant, Daniel Tonge
Software Mentions: 1
Published: over 7 years ago

10.3389/fmicb.2019.02640

Diversity Distribution and Assembly Mechanisms of Planktonic and Benthic Microeukaryote Communities in Intertidal Zones of Southeast Fujian, China
Cited by: 20
Author(s): Jie Kong, Ying Wang, Alan Warren, Bangqin Huang, Ping Sun
Software Mentions: 1
Published: almost 7 years ago

10.3389/fmicb.2020.01096

ClpV3 of the H3-Type VI Secretion System (H3-T6SS) Affects Multiple Virulence Factors in Pseudomonas aeruginosa
Cited by: 14
Author(s): Yanqi Li, Lin Chen, Pansong Zhang, Anjali Y. Bhagirath, Kangmin Duan
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms20205069

Renal Artery Stenosis Alters Gene Expression in Swine Scattered Tubular-Like Cells
Cited by: 7
Author(s): Arash Aghajani Nargesi, Xiang Yang Zhu, Yuanhang Liu, Hui Tang, Kyra L. Jordan, Lilach O. Lerman, Alfonso Eirin
Software Mentions: 1
Published: almost 7 years ago

10.3389/fmicb.2018.02308

Microbial Community and Metabolic Activity in Thiocyanate Degrading Low Temperature Microbial Fuel Cells
Cited by: 7
Author(s): Gaofeng Ni, Sebastian Canizales, Elias Broman, Domenico Simone, Viraja R. Palwai, Daniel Lundin, Margarita López-Fernández, Tom Sleutels, Mark Dopson
Software Mentions: 1
Published: almost 8 years ago

10.3390/antiox9111059

Curcumin Mitigates AFB1-Induced Hepatic Toxicity by Triggering Cattle Antioxidant and Anti-inflammatory Pathways: A Whole Transcriptomic In Vitro Study
Cited by: 32
Author(s): Marianna Pauletto, Mery Giantin, Roberta Tolosi, Irene Bassan, Andrea Barbarossa, Anna Zaghini, Mauro Dacasto
Software Mentions: 1
Published: almost 6 years ago

10.3389/fmicb.2016.01465

Exploratory Investigation of Bacteroides fragilis Transcriptional Response during In vitro Exposure to Subinhibitory Concentration of Metronidazole
Cited by: 7
Author(s): Michele Cristine Ribeiro de Freitas, Juliana Alves Resende, Alessandra Barbosa Ferreira-Machado, Guadalupe del Rosario Quispe Saji, Ana Tereza Ribeiro de Vasconcelos, Vânia Lúcia da Silva, Marisa Fabiana Nicolás, Cláudio Galuppo Diniz
Software Mentions: 1
Published: almost 10 years ago

10.3389/fmicb.2018.00752

Infection by a Giant Virus (AaV) Induces Widespread Physiological Reprogramming in Aureococcus anophagefferens CCMP1984 – A Harmful Bloom Algae
Cited by: 30
Author(s): Mohammad Moniruzzaman, Eric R. Gann, Steven W. Wilhelm
Software Mentions: 1
Published: over 8 years ago

10.3389/fmicb.2019.01622

Molecular Signatures of Non-typeable Haemophilus influenzae Lung Adaptation in Pediatric Chronic Lung Disease
Cited by: 13
Author(s): Ammar Aziz, Derek S. Sarovich, Elizabeth Nosworthy, Jemima Beissbarth, Anne B. Chang, Heidi Smith‐Vaughan, Erin P. Price, Tegan M. Harris
Software Mentions: 1
Published: about 7 years ago

10.3389/fmicb.2020.539702

Calcineurin Regulates Conidiation, Chlamydospore Formation and Virulence in Fusarium oxysporum f. sp. lycopersici
Cited by: 10
Author(s): Yi-Hsuan Hou, Li-Hang Hsu, Hsuan-Fu Wang, Yu-Hsin Lai, Ying-Lien Chen
Software Mentions: 1
Published: almost 6 years ago

10.3389/fmicb.2018.00189

Functional Genomics and Phylogenetic Evidence Suggest Genus-Wide Cobalamin Production by the Globally Distributed Marine Nitrogen Fixer Trichodesmium
Cited by: 10
Author(s): Nathan G. Walworth, Michael D. Lee, Christopher Suffridge, Pingping Qu, Fei-Xue Fu, Mak A. Saito, Eric A. Webb, Sergio A. Sañudo‐Wilhelmy, David A. Hutchins
Software Mentions: 1
Published: over 8 years ago

10.3389/fmicb.2015.00631

Changes in gene expression of Prymnesium parvum induced by nitrogen and phosphorus limitation
Cited by: 36
Author(s): Zhenfeng Liu, Amy E. Koid, Ramón Terrado, Victoria Campbell, David A. Caron, Karla B. Heidelberg
Software Mentions: 1
Published: about 11 years ago

10.3389/fmicb.2018.02569

Organic Particles: Heterogeneous Hubs for Microbial Interactions in Aquatic Ecosystems
Cited by: 39
Author(s): Mina Bižić-Ionescu, Danny Ionescu, Hans‐Peter Grossart
Software Mentions: 1
Published: almost 8 years ago

10.3390/nu12020511

Short-Term Caloric Restriction Attenuates Obesity-Induced Pro-inflammatory Response in Male Rhesus Macaques
Cited by: 4
Author(s): Hollis Wright, Mithila Handu, Allen Jankeel, Ilhem Messaoudi, Oleg Varlamov
Software Mentions: 1
Published: over 6 years ago

10.3389/fmicb.2016.01279

Demethylase Inhibitor Fungicide Resistance in Pyrenophora teres f. sp. teres Associated with Target Site Modification and Inducible Overexpression of Cyp51
Cited by: 55
Author(s): Wesley J. Mair, Wei‐Wei Deng, Jonathan Mullins, Samuel West, Penghao Wang, Naghmeh Besharat, Simon R. Ellwood, Richard P. Oliver, Francisco J. López-Ruiz
Software Mentions: 1
Published: about 10 years ago

10.3389/fmicb.2019.00848

Adaptation of the Human Gut Microbiota Metabolic Network During the First Year After Birth
Cited by: 11
Author(s): Alvaro Fuertes, Sergio Pérez-Burillo, Iñigo Apaolaza, Yvonne Vallès, M. Pilar Francino, José Ángel Rufián-Henares, Francisco J. Planes
Software Mentions: 1
Published: over 7 years ago

10.3389/fmicb.2018.00299

Temporal Expression Dynamics of Plant Biomass-Degrading Enzymes by a Synthetic Bacterial Consortium Growing on Sugarcane Bagasse
Cited by: 22
Author(s): Diego Javier Jiménez, Maryam Chaib De Mares, Joana Falcão Salles
Software Mentions: 1
Published: over 8 years ago

10.3389/fmicb.2016.00880

Genetic Manipulation of Competition for Nitrate between Heterotrophic Bacteria and Diatoms
Cited by: 41
Author(s): Rachel E. Diner, Sarah M. Schwenck, John P. McCrow, Hong Zheng, Andrew E. Allen
Software Mentions: 1
Published: about 10 years ago

10.3390/ijms20235893

An Integrated Analysis of the Rice Transcriptome and Metabolome Reveals Root Growth Regulation Mechanisms in Response to Nitrogen Availability
Cited by: 39
Author(s): Xin Wei, Lina Zhang, Wenzhong Zhang, Jiping Gao, Jun Yi, Xiaoxi Zhen, Min Du, Yanze Zhao, Liqiang Chen
Software Mentions: 1
Published: almost 7 years ago

10.3389/fmicb.2017.01266

Long-Term Rock Phosphate Fertilization Impacts the Microbial Communities of Maize Rhizosphere
Cited by: 54
Author(s): Ubiana C. Silva, Julliane Dutra Medeiros, Laura Hora Rios Leite, Daniel Morais, Sara Cuadros-Orellana, Carlos A. S. Oliveira, U. G. de P. Lana, E. A. Gomes, Vera Lúcia dos Santos
Software Mentions: 1
Published: about 9 years ago

10.3389/fmicb.2019.02452

Single-Cell RNA Sequencing of Plant-Associated Bacterial Communities
Cited by: 10
Author(s): Qin Ma, Heike Bücking, Jose L. Gonzalez-Hernandez, Senthil Subramanian
Software Mentions: 1
Published: almost 7 years ago

10.3390/antibiotics9010035

Effects of Early Intervention with Antibiotics and Maternal Fecal Microbiota on Transcriptomic Profiling Ileal Mucusa in Neonatal Pigs
Cited by: 5
Author(s): Rongying Xu, Jiajia Wan, Chun-Hui Lin, Yong Su
Software Mentions: 1
Published: over 6 years ago

10.3389/fmicb.2021.651744

Growth on Formic Acid Is Dependent on Intracellular pH Homeostasis for the Thermoacidophilic Methanotroph Methylacidiphilum sp. RTK17.1
Cited by: 11
Author(s): Carlo R. Carere, Kiel Hards, Kathryn Wigley, Luke Carman, Karen M. Houghton, Gregory M. Cook, Matthew B. Stott
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2016.00078

Integrated Translatomics with Proteomics to Identify Novel Iron–Transporting Proteins in Streptococcus pneumoniae
Cited by: 31
Author(s): Xiao-Yan Yang, Kui He, Gaofei Du, Xiaohui Wu, Guangchuang Yu, Yunlong Pan, Gong Zhang, Xia Sun, Qing‐Yu He
Software Mentions: 1
Published: over 10 years ago

10.3389/fmicb.2016.01545

New Genes Involved in Osmotic Stress Tolerance in Saccharomyces cerevisiae
Cited by: 18
Author(s): Ramón González, Pilar Morales, Jordi Tronchoni, Gustavo Cordero-Bueso, Enrico Vaudano, Manuel Quirós, Maïté Novo, Rafael Torres‐Pérez, Eva Valero
Software Mentions: 1
Published: almost 10 years ago

10.3389/fmicb.2017.00180

Critical Issues in Mycobiota Analysis
Cited by: 63
Author(s): Bettina Halwachs, Nandhitha Madhusudhan, Robert Krause, R. Henrik Nilsson, Christine Moissl-Eichinger, Christoph Högenauer, Gerhard G. Thallinger, Gregor Gorkiewicz
Software Mentions: 1
Published: over 9 years ago

10.3390/nu12103051

A Multi-Omics Approach Identifies Key Regulatory Pathways Induced by Long-Term Zinc Supplementation in Human Primary Retinal Pigment Epithelium
Cited by: 14
Author(s): Eszter Emri, Elöd Körtvely, Sascha Dammeier, Franziska Klose, David Simpson, Anneke I. den Hollander, Marius Ueffing, Imre Lengyel
Software Mentions: 1
Published: almost 6 years ago

10.3389/fmicb.2018.00356

Comparative Genomics of the Baltic Sea Toxic Cyanobacteria Nodularia spumigena UHCC 0039 and Its Response to Varying Salinity
Cited by: 12
Author(s): Jonna Teikari, Songjun Hou, Matti Wahlsten, Wolfgang R. Hess, Kaarina Sivonen
Software Mentions: 1
Published: over 8 years ago

10.3389/fmicb.2021.615893

Transcriptome Profiling Reveals a Novel Mechanism of Antiviral Immunity Upon Sacbrood Virus Infection in Honey Bee Larvae (Apis cerana)
Cited by: 10
Author(s): Yanjun Guo, Zhengyi Zhang, Mingsheng Zhuang, Liuhao Wang, Kai Li, Jun Yao, Huipeng Yang, Jiaxing Huang, Ya Hao, Ying Fan, Hira Mannan, Jie Wu, Yanping Chen, Jilian Li
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2019.00150

Deciphering the Antibacterial Mode of Action of Alpha-Mangostin on Staphylococcus epidermidis RP62A Through an Integrated Transcriptomic and Proteomic Approach
Cited by: 35
Author(s): Murugesan Sivaranjani, Katarzyna Leskinen, Chairmandurai Aravindraja, Päivi Saavalainen, Shunmugiah Karutha Pandian, Mikael Skurnik, Arumugam Veera Ravi
Software Mentions: 1
Published: over 7 years ago

10.3390/ani11061563

Expression Characteristics of microRNA in Pig Umbilical Venous Blood and Umbilical Arterial Blood
Cited by: 5
Author(s): Mailin Gan, Lin Liu, Shunhua Zhang, Zhanbao Guo, Yimin Tan, Jia Luo, Qiong Yang, Hongmei Pan, Xuewei Li, Jinyong Wang, Linyuan Shen, Li Zhu
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2018.01643

Long-Term Land Use Affects Phosphorus Speciation and the Composition of Phosphorus Cycling Genes in Agricultural Soils
Cited by: 54
Author(s): Liu Jin, Barbara J. Cade-Menun, Jianjun Yang, Yongfeng Hu, Corey W. Liu, Julien Tremblay, Kerry LaForge, Michael P. Schellenberg, Chantal Hamel, Luke D. Bainard
Software Mentions: 1
Published: about 8 years ago

10.3389/fmicb.2018.00859

Comparative Metatranscriptomics of Wheat Rhizosphere Microbiomes in Disease Suppressive and Non-suppressive Soils for Rhizoctonia solani AG8
Cited by: 62
Author(s): Helen L. Hayden, Keith W. Savin, Jenny Wadeson, Vadakattu V. S. R. Gupta, Pauline M. Mele
Software Mentions: 1
Published: over 8 years ago

10.3389/fmicb.2018.01765

Comparative Transcriptomic Analysis of Streptococcus thermophilus TH1436 and TH1477 Showing Different Capability in the Use of Galactose
Cited by: 18
Author(s): Sabrina Giaretta, Laura Treu, Veronica Vendramin, Vinícius da Silva Duarte, Armin Tarrah, Stefano Campanaro, Viviana Corich
Software Mentions: 1
Published: about 8 years ago

10.3389/fmicb.2014.00430

Wolbachia is not all about sex: male-feminizing Wolbachia alters the leafhopper Zyginidia pullula transcriptome in a mainly sex-independent manner
Cited by: 12
Author(s): Hosseinali Asgharian, Peter L. Chang, Peter John Mazzoglio, Ilaria Negri
Software Mentions: 1
Published: about 12 years ago

10.3389/fmicb.2019.01873

Hydrogen Oxidation Influences Glycogen Accumulation in a Verrucomicrobial Methanotroph
Cited by: 12
Author(s): Carlo R. Carere, Ben McDonald, Hanna Peach, Chris Greening, Daniel J. Gapes, Christophe Collet, Matthew B. Stott
Software Mentions: 1
Published: about 7 years ago

10.3389/fmicb.2020.01264

Yeast Assimilable Nitrogen Concentrations Influence Yeast Gene Expression and Hydrogen Sulfide Production During Cider Fermentation
Cited by: 10
Author(s): Yangbo Song, Patrick A. Gibney, Lailiang Cheng, Shuwen Liu, Gregory M. Peck
Software Mentions: 1
Published: about 6 years ago

10.3390/ani11071946

Identification of Sex-Related Genes from the Three-Spot Swimming Crab Portunus sanguinolentus and Comparative Analysis with the Crucifix Crab Charybdis feriatus
Cited by: 4
Author(s): Yin Zhang, Khor Waiho, Mhd Ikhwanuddin, Hongyu Ma
Software Mentions: 1
Published: about 5 years ago

10.3389/fmicb.2020.00460

Investigating the Role of FlhF Identifies Novel Interactions With Genes Involved in Flagellar Synthesis in Campylobacter jejuni
Cited by: 11
Author(s): Xiaofei Li, Fangzhe Ren, Guoqiang Cai, Pingyu Huang, Qinwen Chai, Ozan Gundogdu, Xinan Jiao, Jinlin Huang
Software Mentions: 1
Published: over 6 years ago

10.3389/fmicb.2020.563139

tpo3 and dur3, Aspergillus fumigatus Plasma Membrane Regulators of Polyamines, Regulate Polyamine Homeostasis and Susceptibility to Itraconazole
Cited by: 6
Author(s): Mingcong Chen, Guowei Zhong, Sha Wang, Jun Zhu, Lei Tang, Lei Li
Software Mentions: 1
Published: over 5 years ago

10.3390/ani9100753

Transferrin Identification in Sterlet (Acipenser ruthenus) Reproductive System
Cited by: 7
Author(s): Miaomiao Xin, Pavlína Věchtová, Anna Shaliutina‐Kolešová, Zoltán Füssy, Dmitry S. Loginov, Borys Dzyuba, Otomar Linhart, Serhii Boryshpolets, Marek Rodina, Ping Li, Yana F. Loginova, Ján Štěrba
Software Mentions: 1
Published: almost 7 years ago

10.3389/fmicb.2018.00877

Genome-Wide Comparative Functional Analyses Reveal Adaptations of Salmonella sv. Newport to a Plant Colonization Lifestyle
Cited by: 16
Author(s): Marcos H. de Moraes, Emanuel Becerra Soto, Isaí Salas González, Prerak Desai, Chu Wu, Steffen Porwollik, Michael McClelland, Max Teplitski
Software Mentions: 1
Published: over 8 years ago

10.3389/fmicb.2018.02418

Transcriptome Analysis of a Spray Drying-Resistant Subpopulation Reveals a Zinc-Dependent Mechanism for Robustness in L. lactis SK11
Cited by: 7
Author(s): Annereinou Dijkstra, Marjo Starrenburg, Tilman Todt, Sacha A. F. T. van Hijum, Jeroen Hugenholtz, Peter A. Bron
Software Mentions: 1
Published: almost 8 years ago

10.3390/ijms21010159

Transcriptome Response to Drought, Rehydration and Re-Dehydration in Potato
Cited by: 47
Author(s): Yongkun Chen, Canhui Li, Jing Yi, Yang Yu, Chunxia Lei, Ming Gong
Software Mentions: 1
Published: over 6 years ago

10.3389/fmicb.2018.01565

Comparative Transcriptomics of Cold Growth and Adaptive Features of a Eury- and Steno-Psychrophile
Cited by: 31
Author(s): Isabelle Raymond-Bouchard, Julien Tremblay, Ianina Altshuler, Charles W. Greer, Lyle G. Whyte
Software Mentions: 1
Published: about 8 years ago

10.3390/ijms21010118

Comparative Proteomic Analysis Reveals the Regulatory Effects of H2S on Salt Tolerance of Mangrove Plant Kandelia obovata
Cited by: 36
Author(s): Yiling Liu, Zhijun Shen, Martín Simón, Huan Li, Dongna Ma, Xike Zhu
Software Mentions: 1
Published: over 6 years ago

10.3389/fpls.2016.01338

Identification of Candidate Anthocyanin-Related Genes by Transcriptomic Analysis of ‘Furongli’ Plum (Prunus salicina Lindl.) during Fruit Ripening Using RNA-Seq
Cited by: 46
Author(s): Zhi‐Zhen Fang, Dan‐Rong Zhou, Xinfu Ye, Cuicui Jiang, Shao‐Lin Pan
Software Mentions: 1
Published: about 10 years ago

10.3389/fpls.2016.00432

Using Transcriptomics to Identify Differential Gene Expression in Response to Salinity among Australian Phragmites australis Clones
Cited by: 18
Author(s): Gareth D. Holmes, Nathan E. Hall, Anthony R. Gendall, Paul I. Boon, Elizabeth A. James
Software Mentions: 1
Published: over 10 years ago

10.3390/ani10040624

Identification of Differentially Expressed MicroRNAs and Their Potential Target Genes in Adipose Tissue from Pigs with Highly Divergent Backfat Thickness
Cited by: 10
Author(s): Kai Xing, Xitong Zhao, Yibing Liu, Fengxia Zhang, Zhen Tan, Xiaolong Qi, Xiangguo Wang, Hemin Ni, Yong Guo, Xihui Sheng, Chuduan Wang
Software Mentions: 1
Published: over 6 years ago

10.3389/fpls.2018.00252

The Novel Secreted Meloidogyne incognita Effector MiISE6 Targets the Host Nucleus and Facilitates Parasitism in Arabidopsis
Cited by: 27
Author(s): Qianqian Shi, Zhenchuan Mao, Xiaoping Zhang, Jian Ling, Runmao Lin, Xi Zhang, Rui Li, Yunsheng Wang, Youyou Yang, Xinyue Cheng, Bingyan Xie
Software Mentions: 1
Published: over 8 years ago

10.3390/ani9070399

Transcriptomic Responses of Two Ecologically Divergent Populations of Japanese Mantis Shrimp (Oratosquilla oratoria) under Thermal Stress
Cited by: 8
Author(s): Fangrui Lou, Zhiqiang Han, Tianxiang Gao
Software Mentions: 1
Published: about 7 years ago

10.3390/ani11051430

Expression Analysis of Circular RNAs in Young and Sexually Mature Boar Testes
Cited by: 5
Author(s): Fei Zhang, Xiaodong Zhang, Ning Wei, Xiangdong Zhang, Zhenyuan Ru, Shiqi Wang, Meiping Sheng, Junrui Zhang, Xueying Zhang, Haiqin Luo, Xin Wang, Zubing Cao, Yunhai Zhang
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms21030817

Role of Phagocytosis in the Pro-Inflammatory Response in LDL-Induced Foam Cell Formation; a Transcriptome Analysis
Cited by: 16
Author(s): Alexander N. Orekhov, Nikita G. Nikiforov, Vasily N. Sukhorukov, M. Kubekina, Igor A. Sobenin, Wei-Kai Wu, Kathy Foxx, Sergey S. Pintus, Philip Stegmaier, Daria Stelmashenko, Alexander Kel, Alexei Gratchev, Alexandra А. Melnichenko, Reinhard Wetzker, Volha I Summerhill, Ichiro Manabe, Yumiko Oishi
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms21030745

Divergent Regulation of Myotube Formation and Gene Expression by E2 and EPA during In-Vitro Differentiation of C2C12 Myoblasts
Cited by: 8
Author(s): Orly Lacham‐Kaplan, Donny M. Camera, John A. Hawley
Software Mentions: 1
Published: over 6 years ago

10.3389/fpls.2021.625729

A Meta-Analysis Reveals Opposite Effects of Biotic and Abiotic Stresses on Transcript Levels of Arabidopsis Intracellular Immune Receptor Genes
Cited by: 11
Author(s): Leiyun Yang, Zhixue Wang, Jian Hua
Software Mentions: 1
Published: over 5 years ago

10.3389/fpls.2015.00389

Molecular characterization of SQUAMOSA PROMOTER BINDING PROTEIN-LIKE (SPL) gene family from Citrus and the effect of fruit load on their expression
Cited by: 37
Author(s): Liron Shalom, Lyudmila Shlizerman, Naftali Zur, Adi Doron‐Faigenboim, Eduardo Blumwald, Avi Sadka
Software Mentions: 1
Published: over 11 years ago

10.3389/fpls.2017.00109

Differential Gene Expression Analysis in Polygonum minus Leaf upon 24 h of Methyl Jasmonate Elicitation
Cited by: 24
Author(s): Reyhaneh Rahnamaie-Tajadod, Kok Keong Loke, Hoe-Han Goh, Normah Mohd Noor
Software Mentions: 1
Published: over 9 years ago

10.3389/fpls.2019.01147

Genome-Wide Identification of Calcium-Dependent Protein Kinases in Chlamydomonas reinhardtii and Functional Analyses in Nitrogen Deficiency-Induced Oil Accumulation
Cited by: 9
Author(s): Yajun Li, Xiaowen Fei, Hao‐Fu Dai, Jiangyue Li, Wei Zhu, Xiaodong Deng
Software Mentions: 1
Published: almost 7 years ago

10.3390/ani10030468

MiRNAs and mRNAs Analysis during Abdominal Preadipocyte Differentiation in Chickens
Cited by: 19
Author(s): Xiangfei Ma, Junwei Sun, Shuaipeng Zhu, Zhenwei Du, Donghua Li, Wenting Li, Zhuanjian Li, Yadong Tian, Xiangtao Kang, Guirong Sun
Software Mentions: 1
Published: over 6 years ago

10.3389/fpls.2017.00319

Comparative Transcriptome Reveals Benzenoid Biosynthesis Regulation as Inducer of Floral Scent in the Woody Plant Prunus mume
Cited by: 23
Author(s): Kai Zhao, Weiru Yang, Yuzhen Zhou, Jie Zhang, Yushu Li, Sagheer Ahmad, Qixiang Zhang
Software Mentions: 1
Published: over 9 years ago

10.3389/fpls.2017.01671

Strigolactones Improve Plant Growth, Photosynthesis, and Alleviate Oxidative Stress under Salinity in Rapeseed (Brassica napus L.) by Regulating Gene Expression
Cited by: 115
Author(s): Ning Ma, Chao Hu, Lin Wan, Qiong Hu, Jie Xiong, Chunlei Zhang
Software Mentions: 1
Published: almost 9 years ago

10.3389/fpls.2016.01953

Comparative Transcriptome Analysis between Gynoecious and Monoecious Plants Identifies Regulatory Networks Controlling Sex Determination in Jatropha curcas
Cited by: 27
Author(s): Maosheng Chen, Bang-Zhen Pan, Qi Fu, Yongfu Tao, Jorge Martínez‐Herrera, Longjian Niu, Jun Ni, Yi Dong, Miaomiao Zhao, Zeng-Fu Xu
Software Mentions: 1
Published: over 9 years ago

10.3389/fpls.2021.700651

Transcription Factor GmWRKY46 Enhanced Phosphate Starvation Tolerance and Root Development in Transgenic Plants
Cited by: 9
Author(s): Li Cheng, Kangning Li, Xinyi Liu, Hui Ruan, Min Zheng, Zhijie Yu, Junyi Gai, Shouping Yang
Software Mentions: 1
Published: almost 5 years ago

10.1080/19768354.2018.1487335

Time-series transcriptomic analysis of the kelp grouper <i>Epinephelus moara</i> in response to low salinity stress
Cited by: 5
Author(s): Qiang Gao, Yanfeng Yue, Minghua Min, Shi-Qing Peng, Zhaohong Shi, Jinbo Wang, Tao Zhang
Software Mentions: 1
Published: about 8 years ago

10.3389/fpls.2020.00728

Identification of Known and Novel MicroRNAs in Raspberry Organs Through High-Throughput Sequencing
Cited by: 5
Author(s): Gengxuan Yan, Jie Zhang, Meng Jiang, Xince Gao, Hongyi Yang, Lili Li
Software Mentions: 1
Published: over 6 years ago

10.3389/fpls.2021.684987

Transcriptome Analysis of Chloris virgata, Which Shows the Fastest Germination and Growth in the Major Mongolian Grassland Plant
Cited by: 1
Author(s): Byambajav Bolortuya, Syutaro Kawabata, Ayumi Yamagami, Bekh Ochir Davaapurev, Fumiyuki Takahashi, Komaki Inoue, Asaka Kanatani, Keiichi Mochida, Minoru Kumazawa, Kentaro Ifuku, Sodnomdarjaa Jigjidsuren, Tugsjargal Battogtokh, Udval Gombosuren, Kazuo Shinozaki, Tadao Asami, Javzan Batkhuu, Takeshi Nakano
Software Mentions: 1
Published: about 5 years ago

10.3389/fpls.2016.01194

Temporal-Spatial Transcriptome Analyses Provide Insights into the Development of Petaloid Androecium in Canna indica
Cited by: 8
Author(s): Xueyi Tian, Qianxia Yu, Huanfang Liu, Jingping Liao
Software Mentions: 1
Published: about 10 years ago

Projects: bioconductor: edgeR

Science Score: 100/100

Bonuses:

Papers Mentioning edgeR 6,568