bioconductor: edgeR | Projects | Ecosyste.ms: Papers

10.1186/1471-2164-14-763

Comparative transcriptome analysis of geographically distinct virulent and attenuated Babesia bovis strains reveals similar gene expression changes through attenuation
Cited by: 50
Author(s): Monica J. Pedroni, Kerry S. Sondgeroth, Gina M Gallego-López, Ignacio Echaide, Audrey O.T. Lau
Software Mentions: 1
Published: almost 13 years ago

10.1186/s12864-015-1667-1

De novo assembly of the Carcinus maenas transcriptome and characterization of innate immune system pathways
Cited by: 46
Author(s): Bas Verbruggen, Lisa K. Bickley, Eduarda M. Santos, Charles R. Tyler, Grant D. Stentiford, Kelly S. Bateman, Ronny van Aerle
Software Mentions: 1
Published: over 11 years ago

10.1186/s12864-018-5318-1

Differential responses of Lasiopodomys mandarinus and Lasiopodomys brandtii to chronic hypoxia: a cross-species brain transcriptome analysis
Cited by: 13
Author(s): Qianqian Dong, Luye Shi, Yangwei Li, Mengwan Jiang, Hong Sun, Baishi Wang, Han Cheng, Yifeng Zhang, Tian Shao, Yuhua Shi, Zhenlong Wang
Software Mentions: 1
Published: almost 8 years ago

10.1186/s12864-020-6494-3

Transcriptomic analysis of the testicular fusion in Spodoptera litura
Cited by: 5
Author(s): Yaqing Chang, Jun Ou, Yucheng Liu, Qiong Wu, Liang Wen, Sichun Zheng, Li Sheng, Qili Feng, Lin Liu
Software Mentions: 1
Published: over 6 years ago

10.1186/s12864-021-07879-6

Analyzing the gonadal transcriptome of the frog Hoplobatrachus rugulosus to identify genes involved in sex development
Cited by: 5
Author(s): Yun Tang, Jing-Yi Chen, Guohua Ding, Lin Zhen-shan
Software Mentions: 1
Published: over 5 years ago

10.1186/s12864-019-6082-6

A genomic analysis and transcriptomic atlas of gene expression in Psoroptes ovis reveals feeding- and stage-specific patterns of allergen expression
Cited by: 13
Author(s): Stewart T. G. Burgess, Edward J Marr, Kathryn Bartley, Francesca Nunn, Rachel E. Down, Robert J. Weaver, Jessica C. Prickett, J. A. Dunn, Stéphane Rombauts, Thomas Van Leeuwen, Yves Van de Peer, Alasdair J. Nisbet
Software Mentions: 1
Published: about 7 years ago

10.1186/1471-2164-14-400

The acute transcriptional response of the coral Acropora millepora to immune challenge: expression of GiMAP/IAN genes links the innate immune responses of corals with those of mammals and plants
Cited by: 43
Author(s): Yvonne Weiss, Sylvain Forêt, David C. Hayward, Tracy D. Ainsworth, Rob King, Eldon E. Ball, David J. Miller
Software Mentions: 1
Published: over 13 years ago

10.1186/s12864-020-06869-4

Comparative RNA-Seq transcriptome analyses reveal dynamic time-dependent effects of 56Fe, 16O, and 28Si irradiation on the induction of murine hepatocellular carcinoma
Cited by: 5
Author(s): Anna M. Nia, Kamil Khanipov, Brooke L. Barnette, Robert L. Ullrich, George Golovko
Software Mentions: 1
Published: over 6 years ago

10.1186/s12864-017-3515-y

Transcriptome profiling of the floating-leaved aquatic plant Nymphoides peltata in response to flooding stress
Cited by: 7
Author(s): Juanxia Wu, Huabin Zhao, Dan Yu, Xinglong Xu
Software Mentions: 1
Published: over 9 years ago

10.1186/s12864-021-07825-6

Maternal cold exposure induces distinct transcriptome changes in the placenta and fetal brown adipose tissue in mice
Cited by: 3
Author(s): Sujoy Ghosh, Chul‐Hong Park, Jisu Lee, Nathan Lee, Rui Zhang, Clara Huesing, Dorien Reijnders, Jenny L. Sones, Heike Münzberg, Leanne M. Redman, Jason Y. Chang
Software Mentions: 1
Published: over 5 years ago

10.1186/s12864-019-5823-x

Understanding the liver under heat stress with statistical learning: an integrated metabolomics and transcriptomics computational approach
Cited by: 15
Author(s): Allen Hubbard, Xiaoke Zhang, Sara Jastrebski, Abhyudai Singh, Carl J. Schmidt
Software Mentions: 1
Published: over 7 years ago

10.1186/s12865-021-00439-3

Differential long non-coding RNA expression profile and function analysis in primary Sjogren’s syndrome
Cited by: 7
Author(s): Xiaochan Chen, Qi Cheng, Yan Du, Lei Liu, Huaxiang Wu
Software Mentions: 1
Published: over 5 years ago

10.1186/s12865-019-0292-1

Tristetraprolin specifically regulates the expression and alternative splicing of immune response genes in HeLa cells
Cited by: 25
Author(s): Yue Tu, Xiongfei Wu, Fengyun Yu, Jianzhong Dang, Juan Wang, Yaxun Wei, Zhitao Cai, Zhipeng Zhou, Wenbiao Liao, Lian Li, Yi Zhang
Software Mentions: 1
Published: over 7 years ago

10.1186/s12881-019-0936-2

POLE mutations improve the prognosis of endometrial cancer via regulating cellular metabolism through AMF/AMFR signal transduction
Cited by: 19
Author(s): Yiran Li, Yiding Bian, Kai Wang, Xiaoping Wan
Software Mentions: 1
Published: almost 7 years ago

10.1186/s12870-015-0630-2

Genome-wide transcriptional and physiological responses to drought stress in leaves and roots of two willow genotypes
Cited by: 26
Author(s): Pascal Pucholt, Per Sjödin, Martin Weih, Ann Christin Rönnberg‐Wästljung, Sofia Berlin
Software Mentions: 1
Published: about 11 years ago

10.1186/s12870-021-02922-w

Identification of regulatory factors promoting embryogenic callus formation in barley through transcriptome analysis
Cited by: 16
Author(s): Jingqi Suo, Chenlu Zhou, Zhikai Zeng, Xipu Li, Hongwu Bian, Junhui Wang, Maoyan Zhu, Ning Han
Software Mentions: 1
Published: over 5 years ago

10.1186/s12870-019-2011-8

Transcriptome analysis and identification of genes associated with fruiting branch internode elongation in upland cotton
Cited by: 9
Author(s): Feiyan Ju, Shaodong Liu, Siping Zhang, Huijuan Ma, Jing Chen, Changwei Ge, Qian Shen, Xiaomeng Zhang, Xinhua Zhao, Yongjiang Zhang, Chaoyou Pang
Software Mentions: 1
Published: about 7 years ago

10.1186/s12870-018-1264-y

Comparative transcriptome analysis reveals distinct ethylene–independent regulation of ripening in response to low temperature in kiwifruit
Cited by: 35
Author(s): William Olubero Asiche, Oscar W. Mitalo, Yuka Kasahara, Yasuaki Tosa, Eric Gituma Mworia, Willis Owino, Koichiro Ushijima, Ryohei Nakano, Kentarô Yano, Yasutaka Kubo
Software Mentions: 1
Published: over 8 years ago

10.1186/s12870-016-0794-4

Examining the transcriptional response of overexpressing anthranilate synthase in the hairy roots of an important medicinal plant Catharanthus roseus by RNA-seq
Cited by: 26
Author(s): Jiayi Sun, Harish Manmathan, Cheng Sun, Christie A. M. Peebles
Software Mentions: 1
Published: over 10 years ago

10.1186/s12870-015-0527-0

Comprehensive analysis of Panax ginseng root transcriptomes
Cited by: 52
Author(s): Murukarthick Jayakodi, Sang-Choon Lee, Yun Sun Lee, Hyun-Seung Park, Nam Hoon Kim, Woojong Jang, Hyun Oh Lee, Ho Jun Joh, Tae-Jin Yang
Software Mentions: 1
Published: over 11 years ago

10.1186/1756-0500-5-506

The bench scientist's guide to statistical analysis of RNA-Seq data
Cited by: 35
Author(s): Craig R. Yendrek, Elizabeth A. Ainsworth, Jyothi Thimmapuram
Software Mentions: 1
Published: about 14 years ago

10.1186/s13104-021-05648-y

The brain transcriptome of the wolf spider, Schizocosa ocreata
Cited by: 0
Author(s): Daniel Stribling, Peter L. Chang, Justin E. Dalton, Christopher A. Conow, Malcolm F. Rosenthal, Eileen A. Hebets, Rita M. Graze, Michelle N. Arbeitman
Software Mentions: 1
Published: over 5 years ago

10.1186/s12918-016-0374-0

Small RNA profiles in soybean primary root tips under water deficit
Cited by: 31
Author(s): Yun Zheng, Vandana K. Hivrale, Xiaotuo Zhang, Babu Valliyodan, Christine Lelandais‐Brière, Andrew Farmer, Gregory D. May, Martín Crespi, Henry T. Nguyen, Ramanjulu Sunkar
Software Mentions: 1
Published: almost 10 years ago

10.1186/s12918-015-0223-6

Analyzing Th17 cell differentiation dynamics using a novel integrative modeling framework for time-course RNA sequencing data
Cited by: 10
Author(s): Jukka Intosalmi, Helena Ahlfors, Sini Rautio, Henrik Mannerstöm, Zhi Chen, Riitta Lahesmaa, Brigitta Stockinger, Harri Lähdesmäki
Software Mentions: 1
Published: almost 11 years ago

10.1186/s12894-017-0292-5

A Drosophila genetic model of nephrolithiasis: transcriptional changes in response to diet induced stone formation
Cited by: 8
Author(s): Vera Y. Chung, Benjamin Turney
Software Mentions: 1
Published: almost 9 years ago

10.1186/1756-0381-7-15

An iteration normalization and test method for differential expression analysis of RNA-seq data
Cited by: 8
Author(s): Yan Zhou, Nan Lin, Baoxue Zhang
Software Mentions: 1
Published: about 12 years ago

10.1016/j.bbrep.2021.101061

Transcriptome dynamics during cholesterol-induced transdifferentiation of human coronary artery smooth muscle cells: A Gene Ontology-centric clustering approach
Cited by: 1
Author(s): Kentaro Inoue, Hiromitsu Araki, Fumihito Miura, Takashi Ito
Software Mentions: 1
Published: about 5 years ago

10.1080/21655979.2019.1710932

Genome-wide analysis of PYL-PP2C-SnRK2s family in Camellia sinensis
Cited by: 18
Author(s): Ping Xu, Xueying Zhang, Hui Su, Xiaofen Liu, Yuefei Wang, Gaojie Hong
Software Mentions: 1
Published: almost 7 years ago

10.3390/bioengineering8070090

Reengineering Tumor Microenvironment with Sequential Interleukin Delivery
Cited by: 7
Author(s): Marxa L. Figueiredo, Rachel A. Letteri, Delphine Chan‐Seng, Shreya Kumar, Cosette M. Rivera-Cruz, Todd Emrick
Software Mentions: 1
Published: over 5 years ago

10.1002/bies.201500192

Lineage-specific genomics: Frequent birth and death in the human genome
Cited by: 4
Author(s): Robert S. Young
Software Mentions: 1
Published: over 10 years ago

10.1093/bioinformatics/btz754

Computationally predicted gene regulatory networks in molluscan biomineralization identify extracellular matrix production and ion transportation pathways
Cited by: 15
Author(s): Victoria A. Sleight, Philipp Antczak, Francesco Falciani, Melody S. Clark
Software Mentions: 1
Published: about 7 years ago

10.1093/bioinformatics/btw334

Integrated gene set analysis for microRNA studies
Cited by: 23
Author(s): Francisco García‐García, Joaquín Panadero, Joaquín Dopazo, David Montaner
Software Mentions: 1
Published: over 10 years ago

10.1093/bioinformatics/btw022

The TraDIS toolkit: sequencing and analysis for dense transposon mutant libraries
Cited by: 158
Author(s): Lars Barquist, Matthew Mayho, Carla Cummins, Amy K. Cain, Christine J. Boinett, Andrew J. Page, Gemma C. Langridge, Michael A. Quail, Jacqueline A. Keane, Julian Parkhill
Software Mentions: 1
Published: almost 11 years ago

10.6026/97320630014153

Biomarker Identification from RNA-Seq Data using a Robust Statistical Approach
Cited by: 9
Author(s): Zobaer Akond, Munirul Alam, Md. Nurul Haque Mollah
Software Mentions: 1
Published: over 8 years ago

10.1186/1745-6150-8-10

Genome-wide analysis reveals downregulation of miR-379/miR-656 cluster in human cancers
Cited by: 69
Author(s): Saurabh V. Laddha, Subhashree Nayak, Deepanjan Paul, Rajasekhara Reddy, Charu Sharma, Prerana Jha, Manoj Hariharan, Anurag Agrawal, Shantanu Chowdhury, Chitra Sarkar, Arijit Mukhopadhyay
Software Mentions: 1
Published: over 13 years ago

10.1242/bio.052381

Cardiac hypertrophy in a dish: A human stem cell based model
Cited by: 8
Author(s): Markus Johansson, Benjamin Ulfenborg, Christian X. Andersson, Sepideh Heydarkhan‐Hagvall, Anders Jeppsson, Peter Sartipy, Jane Synnergren
Software Mentions: 1
Published: almost 7 years ago

10.1242/bio.058678

Specificity and off-target effects of AAV8-TBG viral vectors for the manipulation of hepatocellular gene expression in mice
Cited by: 18
Author(s): Christos Kiourtis, Ania Wilczynska, Colin Nixon, William Clark, Stephanie May, Tom Bird
Software Mentions: 1
Published: about 5 years ago

10.1242/bio.058503

The thermal dependence and molecular basis of physiological color change in Takydromus septentrionalis (Lacertidae)
Cited by: 3
Author(s): Kun Guo, Jun Zhong, Lin Zhu, Fan Xie, Yuguang Du, Xiang Ji
Software Mentions: 1
Published: over 5 years ago

10.1242/bio.038281

Transcriptomic analyses highlight the likely metabolic consequences of colonization of a cnidarian host by native or non-native Symbiodinium species
Cited by: 17
Author(s): Ming-Chuan Lin, Shunichi Takahashi, Sylvain Forêt, Simon K. Davy, David J. Miller
Software Mentions: 1
Published: almost 8 years ago

10.1242/bio.058528

Cex1 is a component of the COPI intracellular trafficking machinery
Cited by: 0
Author(s): Ludovic Enkler, Bruno Rinaldi, Johan-Owen De Craene, Philippe Hammann, Osamu Nureki, Bruno Senger, Sylvie Friant, Hubert Dominique Becker
Software Mentions: 1
Published: over 5 years ago

10.1242/bio.029405

Prednisolone induces osteoporosis-like phenotypes via focal adhesion signaling pathway in zebrafish larvae
Cited by: 20
Author(s): Lei Huo, Lei Wang, Zhaoyao Yang, Pingyuan Li, Dechun Geng, Yaozeng Xu
Software Mentions: 1
Published: over 8 years ago

10.1186/s40659-018-0174-7

Identification of key genes and pathways involved in response to pain in goat and sheep by transcriptome sequencing
Cited by: 13
Author(s): Xin Deng, Dong Wang, Shenyuan Wang, Haisheng Wang, Huanmin Zhou
Software Mentions: 1
Published: about 8 years ago

10.1186/s13293-018-0173-y

Orphan receptor GPR37L1 contributes to the sexual dimorphism of central cardiovascular control
Cited by: 12
Author(s): James L. Coleman, Margaret A Mouat, Jianxin Wu, Nikola Jancovski, Jaspreet K Bassi, Andrea Y. Chan, David T. Humphreys, Nadine Mrad, Ze‐Yan Yu, Tony Ngo, Siiri E. Iismaa, Cristobal G. dos Remedios, Michael P. Feneley, Andrew M. Allen, Robert M. Graham, Nicola J. Smith
Software Mentions: 1
Published: over 8 years ago

10.3390/biology10070607

Life-On-Hold: Lanthanoids Rapidly Induce a Reversible Ametabolic State in Mammalian Cells
Cited by: 0
Author(s): A.M. Subbot, Sabina Kondratieva, Novikov Ia, Natalia Gogoleva, О. С. Козлова, I. V. Chebotar, Guzel Gazizova, Anastasia V. Ryabova, М. А. Воронцова, Takahiro Kikawada, Elena Shagimardanova, Oleg Gusev
Software Mentions: 1
Published: over 5 years ago

10.3390/biology9050109

Brain Control Reproduction by the Endocrine System of Female Blue Gourami (Trichogaster trichopterus)
Cited by: 4
Author(s): Gad Degani
Software Mentions: 1
Published: over 6 years ago

10.3390/biology10040312

Differential Expression of the Tetraspanin CD9 in Normal and Leukemic Stem Cells
Cited by: 0
Author(s): Rachid Lahlil, Maurice Scrofani, Anne Aries, Philippe Hénon, Bernard Drénou
Software Mentions: 1
Published: over 5 years ago

10.1039/c9bm01481k

Heparin-based hydrogel scaffolding alters the transcriptomic profile and increases the chemoresistance of MDA-MB-231 triple-negative breast cancer cells
Cited by: 12
Author(s): Nidhi Menon, Ha X. Dang, Udaya Sree Datla, Maryam Moarefian, Christopher B. Lawrence, Christopher A. Maher, Coleen Jones
Software Mentions: 1
Published: almost 7 years ago

10.1155/2021/6692544

miR-145-5p Inhibits the Proliferation, Migration, and Invasion of Esophageal Carcinoma Cells by Targeting ABRACL
Cited by: 11
Author(s): Shengming Fan, Pei Chen, Shugang Li
Software Mentions: 1
Published: over 5 years ago

10.1155/2019/5023125

Aluminum Responsive Genes in Flax (Linum usitatissimum L.)
Cited by: 10
Author(s): George S. Krasnov, Alexey A. Dmitriev, Alexander V. Zyablitsin, Tatiana A. Rozhmina, А. А. Жученко, Parfait Kezimana, Anastasiya V. Snezhkina, Maria S. Fedorova, Roman O. Novakovskiy, Elena N. Pushkova, Liubov V. Povkhova, Nadezhda L. Bolsheva, Anna V. Kudryavtseva, Nataliya V. Melnikova
Software Mentions: 1
Published: over 7 years ago

10.1155/2020/8579651

Identification of Long Noncoding RNA Biomarkers for Hepatocellular Carcinoma Using Single-Sample Networks
Cited by: 2
Author(s): Xiaoqing Yu, Jingsong Zhang, Rui Yang, Chun Li
Software Mentions: 1
Published: almost 6 years ago

10.1155/2021/5585884

Identification of MicroRNAs in Taxillus chinensis (DC.) Danser Seeds under Cold Stress
Cited by: 5
Author(s): Jine Fu, Lingyun Wan, Lina Song, Lili He, Ni Jiang, Hairong Long, Juan Huo, Xiaowen Ji, Ying Wei, Shugen Wei, Limei Pan
Software Mentions: 1
Published: over 5 years ago

10.1155/2018/7538204

An Efficient Feature Selection Strategy Based on Multiple Support Vector Machine Technology with Gene Expression Data
Cited by: 25
Author(s): Ying Zhang, Qingchun Deng, Wenbin Liang, Xuan Zou
Software Mentions: 1
Published: about 8 years ago

10.1155/2021/9917060

Increased EHHADH Expression Predicting Poor Survival of Osteosarcoma by Integrating Weighted Gene Coexpression Network Analysis and Experimental Validation
Cited by: 1
Author(s): Juncheng Cui, Guoliang Yi, Jinxin Li, Yangtao Li, Dongyang Qian
Software Mentions: 1
Published: over 5 years ago

10.1093/brain/awab123

Aromatic <scp>l</scp>-amino acid decarboxylase deficiency: a patient-derived neuronal model for precision therapies
Cited by: 14
Author(s): Giada Rossignoli, Karolin Krämer, Eleonora Lugarà, Haya Alrashidi, Simon Pope, Carmen De La Fuente Barrigon, Katy Barwick, Giovanni Bisello, Joanne Ng, John R. Counsell, Gabriele Lignani, Simon Heales, Mariarita Bertoldi, Serena Barral, Manju A. Kurian
Software Mentions: 1
Published: over 5 years ago

10.3390/brainsci9070155

Regional Analysis of the Brain Transcriptome in Mice Bred for High and Low Methamphetamine Consumption
Cited by: 16
Author(s): Robert Hitzemann, Ovidiu D. Iancu, Cheryl Reed, Harue Baba, Denesa R. Lockwood, Tamara J. Phillips
Software Mentions: 1
Published: over 7 years ago

10.3390/brainsci11070913

Characterization of Early Life Stress-Affected Gut Microbiota
Cited by: 12
Author(s): Noriyoshi Usui, Hideo Matsuzaki, Shoichi Shimada
Software Mentions: 1
Published: over 5 years ago

10.1186/s13058-018-0963-5

Dependence receptor UNC5A restricts luminal to basal breast cancer plasticity and metastasis
Cited by: 14
Author(s): Maria B. Padua, Poornima Bhat‐Nakshatri, Manjushree Anjanappa, Mayuri Prasad, Yangyang Hao, Xi Rao, Sheng Liu, Jun Wan, Yunlong Liu, Kyle McElyea, Max Jacobsen, George E. Sandusky, Sandra K. Althouse, Susan M. Perkins, Harikrishna Nakshatri
Software Mentions: 1
Published: over 8 years ago

10.1186/s13058-018-1059-y

Metastatic breast cancer cells overexpress and secrete miR-218 to regulate type I collagen deposition by osteoblasts
Cited by: 53
Author(s): Xuxiang Liu, Minghui Cao, Melanie R. Palomares, Xiwei Wu, Arthur Li, Yan Wei, Miranda Fong, Wing-Chung Chan, Shizhen Emily Wang
Software Mentions: 1
Published: about 8 years ago

10.1186/s12935-020-01295-8

Construction of a metastasis-associated ceRNA network reveals a prognostic signature in lung cancer
Cited by: 22
Author(s): Qing Cao, Zewen Dong, Shuzhen Liu, Guoyan An, Bianbian Yan, Lei Lei
Software Mentions: 1
Published: over 6 years ago

10.1186/s12935-021-01839-6

Comprehensive analysis of the transcriptome‐wide m6A methylome in invasive malignant pleomorphic adenoma
Cited by: 16
Author(s): Zhaolong Han, Biao Yang, Qin Wang, Yuhua Hu, Yuqiong Wu, Zhen Tian
Software Mentions: 1
Published: over 5 years ago

10.1186/s12935-021-01808-z

LINC00958 promotes the proliferation of TSCC via miR-211-5p/CENPK axis and activating the JAK/STAT3 signaling pathway
Cited by: 19
Author(s): Bo Jia, Junfeng Dao, Jae-Sook Han, Zhijie Huang, Xiang Sun, Xianghuai Zheng, Shijian Xiang, Zhou Hui-xi, Shuguang Liu
Software Mentions: 1
Published: over 5 years ago

10.1186/s12935-021-02075-8

Elevated exosome-derived miRNAs predict osimertinib resistance in non-small cell lung cancer
Cited by: 24
Author(s): Xinying Li, Cen Chen, Zimu Wang, Jiaxin Liu, Wei Sun, Kaikai Shen, Lv Y, Suhua Zhu, Ping Zhan, Tangfeng Lv, Yong Song
Software Mentions: 1
Published: about 5 years ago

10.1186/s12935-021-02001-y

CircRNA NALCN acts as an miR-493-3p sponge to regulate PTEN expression and inhibit glioma progression
Cited by: 10
Author(s): Yi Liu, Simin Chen, Gang Peng, Yixiang Liao, Xue‐Gong Fan, Zuping Zhang, Chenfu Shen
Software Mentions: 1
Published: over 5 years ago

10.1186/s12935-021-01820-3

miR-129-5p inhibits clear cell renal cell carcinoma cell proliferation, migration and invasion by targeting SPN
Cited by: 6
Author(s): Bin Gao, Limin Wang, Na Zhang, Miaomiao Han, Yubo Zhang, Huancai Liu, Dawei Sun, Xiaolong Xiao, Yifei Liu
Software Mentions: 1
Published: over 5 years ago

10.1186/s12935-019-1040-6

Silencing expression of PHF14 in glioblastoma promotes apoptosis, mitigates proliferation and invasiveness via Wnt signal pathway
Cited by: 9
Author(s): Shuai Wu, Chen Luo, Fengjiao Li, Nazia Hameed, Qiu-yan Jin, Jie Zhang
Software Mentions: 1
Published: almost 7 years ago

10.1186/s12935-019-1074-9

Identifying a ten-microRNA signature as a superior prognosis biomarker in colon adenocarcinoma
Cited by: 15
Author(s): Rong Ma, Yimeng Zhao, Miao He, Hongfeng Zhao, Yifan Zhang, Shubo Zhou, Mengcong Gao, Di Di, Jue Wang, Jian Ding, Minjie Wei
Software Mentions: 1
Published: almost 7 years ago

10.1186/s12935-021-01814-1

Identification of four genes and biological characteristics of esophageal squamous cell carcinoma by integrated bioinformatics analysis
Cited by: 13
Author(s): Yexun Song, Wang Xy, Fengjun Wang, Xiaowei Peng, Peiyu Li, Shaojun Liu, Decai Zhang
Software Mentions: 1
Published: over 5 years ago

10.1186/s12935-021-01819-w

LINC00221 silencing prevents the progression of hepatocellular carcinoma through let-7a-5p-targeted inhibition of MMP11
Cited by: 7
Author(s): Lin Yang, Hailong Si, Meng Ma, Fang Yu, Yongchao Jiang, Jintao Wang, Cheng Zhang, Haijuan Xiao
Software Mentions: 1
Published: over 5 years ago

10.1186/s12935-020-01388-4

Identification of prognostic factors for intrahepatic cholangiocarcinoma using long non-coding RNAs-associated ceRNA network
Cited by: 7
Author(s): Zhen Kang, Lixin Guo, Zhuo Zhu, Rongfeng Qu
Software Mentions: 1
Published: over 6 years ago

10.1186/s12935-020-01483-6

MiR-145-5p suppresses the proliferation, migration and invasion of gastric cancer epithelial cells via the ANGPT2/NOD_LIKE_RECEPTOR axis
Cited by: 28
Author(s): Kai Zhou, Bingbing Song, Ming Q. Wei, Jubo Fang, Yufen Xu
Software Mentions: 1
Published: about 6 years ago

10.1186/s12935-018-0704-y

Silencing TRIP13 inhibits cell growth and metastasis of hepatocellular carcinoma by activating of TGF-β1/smad3
Cited by: 31
Author(s): Jianning Yao, Xuexiu Zhang, Yingbo Zhang, Dan Zhao, Bing Gao, Haining Zhou, Shilin Gao, Lianfeng Zhang
Software Mentions: 1
Published: almost 8 years ago

10.1186/s12935-019-0901-3

In silico analysis excavates potential biomarkers by constructing miRNA-mRNA networks between non-cirrhotic HCC and cirrhotic HCC
Cited by: 16
Author(s): Bo Ding, Weiyang Lou, Jingxing Liu, LI Ruo-han, Jing Chen, Weimin Fan
Software Mentions: 1
Published: over 7 years ago

10.1186/s12935-020-01221-y

A long non-coding RNA LINC00461-dependent mechanism underlying breast cancer invasion and migration via the miR-144-3p/KPNA2 axis
Cited by: 12
Author(s): Qiang Zhang, Xiaoyan Jin, Wei Shi, Xin Chen, Wenyang Pang, Xiang Yu, Linjun Yang
Software Mentions: 1
Published: over 6 years ago

10.1002/cam4.4167

A robust signature of immune‐related long non‐coding RNA to predict the prognosis of bladder cancer
Cited by: 10
Author(s): Cong Lai, Zhenyu Wu, Zhuohang Li, Hao Yu, Kuiqing Li, Zhuang Tang, Cheng Liu, Kecheng Xu
Software Mentions: 1
Published: about 5 years ago

10.1002/cam4.3406

Seven immune‐related genes prognostic power and correlation with tumor‐infiltrating immune cells in hepatocellular carcinoma
Cited by: 22
Author(s): Tiantian Liu, Hao Wu, Jianni Qi, Chengyong Qin, Qing Zhu
Software Mentions: 1
Published: about 6 years ago

10.1002/cam4.2071

Candidate genes involved in metastasis of colon cancer identified by integrated analysis
Cited by: 24
Author(s): Yiming Zhou, Yiwen Zang, Yi Yang, Jianbin Xiang, Zongyou Chen
Software Mentions: 1
Published: over 7 years ago

10.1002/cam4.719

Transcriptome profiling reveals novel gene expression signatures and regulating transcription factors of <scp>TGF</scp> β ‐induced epithelial‐to‐mesenchymal transition
Cited by: 32
Author(s): Liutao Du, Shota Yamamoto, Brian L. Burnette, Danshang Huang, Kun Gao, Neema Jamshidi, Michael Kuo
Software Mentions: 1
Published: over 10 years ago

10.1002/cam4.3963

Pivotal factors associated with the immunosuppressive tumor microenvironment and melanoma metastasis
Cited by: 21
Author(s): Chuan Zhang, Dan Dang, Lele Cong, Hongyan Sun, Xianling Cong
Software Mentions: 1
Published: over 5 years ago

10.1002/cam4.2097

Circulating PD‐1 (+) cells may participate in immune evasion in peripheral T‐cell lymphoma and chidamide enhance antitumor activity of PD‐1 (+) cells
Cited by: 10
Author(s): Wei Zhang, Haorui Shen, Yan Zhang, Wei Wang, Shaoxuan Hu, Dongmei Zou, Daobin Zhou
Software Mentions: 1
Published: over 7 years ago

10.1002/cam4.2089

SIRT3 elicited an anti‐Warburg effect through HIF1α/PDK1/PDHA1 to inhibit cholangiocarcinoma tumorigenesis
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Author(s): Lei Xu, Li Yang, Lixing Zhou, Robert Dorfman, Li Liu, Rui Cai, Chenfei Jiang, Dehua Tang, Yuming Wang, Xiaoping Zou, Lei Wang, Mingming Zhang
Software Mentions: 1
Published: over 7 years ago

10.1002/cam4.432

<scp>HER2</scp> as a target in invasive urothelial carcinoma
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Author(s): Joaquim Bellmunt, Lillian Werner, Aristotle Bamias, André P. Fay, Rachel S. Park, Markus Riester, Shamini Selvarajah, Justine A. Barletta, David M. Berman, Silvia de Muga, Marta Salido, Enrique Gallardo, Federico Rojo, Elizabeth A. Guancial, Richard Bambury, Stephanie A. Mullane, Toni K. Choueiri, Massimo Loda, Edward C. Stack, Jonathan E. Rosenberg
Software Mentions: 1
Published: over 11 years ago

10.1002/cam4.2099

Identification of competitive endogenous RNAs network in breast cancer
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Author(s): Xiaojin Wang, Jiahui Wan, Zhanxiang Xu, Jiangbo Shu, Lin Ji, Yutian Liu, Shuwen Zhai, Rongjun Cui
Software Mentions: 1
Published: over 7 years ago

10.1186/s40170-021-00270-9

Targeting MYC-enhanced glycolysis for the treatment of small cell lung cancer
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Author(s): Kasey R. Cargill, C. Allison Stewart, Elizabeth M. Park, Kavya Ramkumar, Robert J. Cardnell, Qi Wang, Lixia Diao, Ли Шен, You-Hong Fan, Wai Kin Chan, Philip L. Lorenzi, Trudy G. Oliver, Lauren A. Byers
Software Mentions: 1
Published: about 5 years ago

10.1186/2049-3002-1-11

Respiratory complex I is essential to induce a Warburg profile in mitochondria-defective tumor cells
Cited by: 74
Author(s): Claudia Calabrese, Luisa Iommarini, Ivana Kurelac, Maria Antonietta Calvaruso, Mariantonietta Capristo, Pier‐Luigi Lollini, Patrizia Nanni, Christian Bergamini, Giordano Nicoletti, Carla De Giovanni, Anna Ghelli, Valentina Giorgio, Mariano Francesco Caratozzolo, Flaviana Marzano, Caterina Manzari, Christine M. Betts, Valerio Carelli, Claudio Ceccarelli, Marcella Attimonelli, Giovanni Romeo, Romana Fato, Michela Rugolo, Apollonia Tullo, Giuseppe Gasparre, Anna Maria Porcelli
Software Mentions: 1
Published: over 13 years ago

10.26508/lsa.202000985

The AXL-PYK2-PKCα axis as a nexus of stemness circuits in TNBC
Cited by: 5
Author(s): Lohit Khera, Yaron Vinik, Flavio Maina, Sima Lev
Software Mentions: 1
Published: over 5 years ago

10.26508/lsa.201800036

Serine catabolism is essential to maintain mitochondrial respiration in mammalian cells
Cited by: 53
Author(s): Stéphanie Lucas, Guohua Chen, Siddhesh Aras, Jian Wang
Software Mentions: 1
Published: over 8 years ago

10.26508/lsa.202000688

IL-36 signaling in keratinocytes controls early IL-23 production in psoriasis-like dermatitis
Cited by: 33
Author(s): Jack Goldstein, Esen Yonca Bassoy, Assunta Caruso, Jennifer Palomo, Emiliana Rodriguez, Sylvain Lemeille, Cem Gabay
Software Mentions: 1
Published: over 6 years ago

10.26508/lsa.202000651

The transcriptional landscape analysis of basal cell carcinomas reveals novel signalling pathways and actionable targets
Cited by: 10
Author(s): Ivan V. Litvinov, Pingxing Xie, Scott R. Gunn, Denis Sasseville, Philippe Lefrançois
Software Mentions: 1
Published: over 5 years ago

10.1186/s13041-020-00589-2

Transcriptomic analysis of long noncoding RNAs and mRNAs expression profiles in the spinal cord of bone cancer pain rats
Cited by: 4
Author(s): Xinran Hou, Yingqi Weng, Qulian Guo, Zhuofeng Ding, Jian Wang, Jiajia Dai, Anqi Wei, Zongbin Song
Software Mentions: 1
Published: over 6 years ago

10.1186/s12943-019-1004-4

RNA N6-methyladenosine demethylase FTO promotes breast tumor progression through inhibiting BNIP3
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Author(s): Yi Niu, Ziyou Lin, Arabella Wan, Honglei Chen, Heng Liang, Lei Sun, Yuan Wang, Xi Li, Xiaofeng Xiong, Bo Wei, Xiaobin Wu, Gang Wan
Software Mentions: 1
Published: over 7 years ago

10.1186/s12943-019-1056-5

A novel tumor suppressor protein encoded by circular AKT3 RNA inhibits glioblastoma tumorigenicity by competing with active phosphoinositide-dependent Kinase-1
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Author(s): Xin Xia, Xixi Li, Fanying Li, Xujia Wu, Maolei Zhang, Huangkai Zhou, Nunu Huang, Xuesong Yang, Feizhe Xiao, Dawei Liu, Lixuan Yang, Nu Zhang
Software Mentions: 1
Published: about 7 years ago

10.1186/s12943-018-0820-2

The lncRNA MACC1-AS1 promotes gastric cancer cell metabolic plasticity via AMPK/Lin28 mediated mRNA stability of MACC1
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Author(s): Yang Zhao, Yajing Liu, Lin Li, Qiong Huang, Wanming He, Shuyi Zhang, Shilin Dong, Zhaowei Wen, Jinjun Rao, Wangjun Liao, Min Shi
Software Mentions: 1
Published: over 8 years ago

10.1186/s12943-021-01384-w

Identification of lymphocyte cell-specific protein-tyrosine kinase (LCK) as a driver for invasion and migration of oral cancer by tumor heterogeneity exploitation
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Author(s): Jonas Weiße, Julia Rosemann, Lisa Müller, Matthias Kappler, Alexander W. Eckert, Markus Glaß, Danny Misiak, Stefan Hüttelmaier, Wolfgang G. Ballhausen, Meçhthild Hatzfeld, Monika Haemmerle, Tony Gutschner
Software Mentions: 1
Published: over 5 years ago

10.3390/molecules22020324

Transcriptomic Analysis of Leaf in Tree Peony Reveals Differentially Expressed Pigments Genes
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Author(s): Jianrang Luo, Qianqian Shi, Lixin Niu, Yanlong Zhang
Software Mentions: 1
Published: over 9 years ago

10.3390/molecules26051210

Divergent and Overlapping Roles for Selected Phytochemicals in the Regulation of Pathological Cardiac Hypertrophy
Cited by: 8
Author(s): Levi Evans, Yiqui Shen, Abigail Bender, Leah Burnett, Musheng Li, Justine S. Habibian, Tong Zhou, Bradley S. Ferguson
Software Mentions: 1
Published: over 5 years ago

10.3390/molecules23123276

Effect of Aspergillus flavus Fungal Elicitor on the Production of Terpenoid Indole Alkaloids in Catharanthus roseus Cambial Meristematic Cells
Cited by: 18
Author(s): Chuxin Liang, Chang Chen, Pengfei Zhou, Lv Xu, Jianhua Zhu, Jincai Liang, Jiachen Zi, Rongmin Yu
Software Mentions: 1
Published: almost 8 years ago

10.3390/molecules22081292

Apigenin Impacts the Growth of the Gut Microbiota and Alters the Gene Expression of Enterococcus
Cited by: 28
Author(s): Minqian Wang, Jenni Firrman, Liqing Zhang, Gustavo Arango-Argoty, Peggy M. Tomasula, LinShu Liu, Weidong Xiao, Kit L. Yam
Software Mentions: 1
Published: about 9 years ago

10.3390/molecules22081364

Biochemical and Comparative Transcriptomic Analyses Identify Candidate Genes Related to Variegation Formation in Paeonia rockii
Cited by: 17
Author(s): Qianqian Shi, Long Li, Xiaoxiao Zhang, Jianrang Luo, Xiang Li, Lijuan Zhai, Li He, Yanlong Zhang
Software Mentions: 1
Published: about 9 years ago

10.3892/mmr.2019.10852

Long non‑coding RNA Unigene56159 promotes glioblastoma multiforme cell proliferation and invasion through negatively regulating microRNA‑194‑5p
Cited by: 2
Author(s): Guangyu Jiang, Hang Dong, Dao‐Yi Yu, Xinyu Yang
Software Mentions: 1
Published: almost 7 years ago

10.1016/j.molmet.2021.101290

Epigenetic rewiring of skeletal muscle enhancers after exercise training supports a role in whole-body function and human health
Cited by: 10
Author(s): Kristine Williams, Germán D. Carrasquilla, Lars R. Ingerslev, Mette Yde Hochreuter, Svenja Hansson, Nicolas Pillon, Ida Donkin, Soetkin Versteyhe, Juleen R. Zierath, Tuomas O. Kilpeläinen, Romain Barrès
Software Mentions: 1
Published: almost 5 years ago

Projects: bioconductor: edgeR

Science Score: 100/100

Bonuses:

Papers Mentioning edgeR 6,568