10.1371/journal.pone.0165919

Improving Gene-Set Enrichment Analysis of RNA-Seq Data with Small Replicates
Cited by: 18
Author(s): Susan A. Yoon, Seon‐Young Kim, Dougu Nam
Software Mentions: 2
Published: almost 10 years ago

10.1371/journal.pone.0067019

ANOVA-Like Differential Expression (ALDEx) Analysis for Mixed Population RNA-Seq
Cited by: 471
Author(s): Andrew D. Fernandes, Jean M. Macklaim, Thomas Linn, Gregor Reid, Gregory B. Gloor
Software Mentions: 2
Published: over 13 years ago

10.1007/s12035-018-1368-2

Bezafibrate Upregulates Mitochondrial Biogenesis and Influence Neural Differentiation of Human-Induced Pluripotent Stem Cells
Cited by: 23
Author(s): Justyna Augustyniak, Jacek Lenart, Paweł Gaj, Monika Kolanowska, Krystian Jażdżewski, Piotr P. Stępień, Leonora Bużańska
Software Mentions: 2
Published: about 8 years ago

10.1371/journal.pone.0224577

Time series experimental design under one-shot sampling: The importance of condition diversity
Cited by: 2
Author(s): Xiaohan Kang, Bruce Hajek, Fen Wu, Yoshie Hanzawa
Software Mentions: 2
Published: about 7 years ago

10.3390/ijms19020373

Transcriptome Analysis of Kiwifruit in Response to Pseudomonas syringae pv. actinidiae Infection
Cited by: 27
Author(s): Tao Wang, Gang Wang, Zhemin Jia, Pan Delin, Jiyu Zhang, Xuehua Zhang
Software Mentions: 2
Published: almost 9 years ago

10.1371/journal.pone.0241655

Contact-dependent traits in Pseudomonas syringae B728a
Cited by: 2
Author(s): Monica N. Hernandez, Steven E. Lindow
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0127985

Altered Interactions between the Gut Microbiome and Colonic Mucosa Precede Polyposis in APCMin/+ Mice
Cited by: 45
Author(s): Joshua S. Son, Shanawaj Khair, Donald W. Pettet, Nengtai Ouyang, Xinyu Tian, Yuanhao Zhang, Wei Zhu, Gerardo G. Mackenzie, Charles E. Robertson, Diana Ir, Daniel N. Frank, Basil Rigas, Ellen Li
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0208993

SLC3A2 is a novel endoplasmic reticulum stress-related signaling protein that regulates the unfolded protein response and apoptosis
Cited by: 17
Author(s): Chunlei Liu, Xin Li, Chen Li, Zeyu Zhang, Xiaojian Gao, Zhilong Jia, Haixu Chen, Qian Jia, Xiaojing Zhao, Jixuan Liu, Bohan Liu, Zhihong Xu, Yaping Tian, Kunlun He
Software Mentions: 2
Published: almost 8 years ago

10.3390/cancers12030697

Oxaliplatin-Induced DHX9 Phosphorylation Promotes Oncogenic Circular RNA CCDC66 Expression and Development of Chemoresistance
Cited by: 39
Author(s): Ya-Chi Lin, Ya-Shan Yu, Hongchin Lin, Kuei‐Yang Hsiao
Software Mentions: 2
Published: over 6 years ago

10.1016/j.molmet.2020.101059

Overexpression of the vitamin D receptor (VDR) induces skeletal muscle hypertrophy
Cited by: 51
Author(s): Joseph J. Bass, Asif Nakhuda, Colleen S. Deane, Matthew S. Brook, Daniel J. Wilkinson, Mathew Piasecki, Andrew Philp, Janelle Tarum, Fawzi Kadi, Ditte Andersen, Amadeo Muñoz García, Kyle Smith, Iain J. Gallagher, Nathaniel J. Szewczyk, Mark E. Cleasby, Philip J. Atherton
Software Mentions: 2
Published: almost 6 years ago

10.3390/cancers11111766

Collagen Induces a More Proliferative, Migratory and Chemoresistant Phenotype in Head and Neck Cancer via DDR1
Cited by: 35
Author(s): Sook Ling Lai, Malcolm Tan, Robert Hollows, Max Robinson, Maha Ibrahim, Sandra Margielewska, Eric Kenneth Parkinson, Anand Ramanathan, Rosnah Binti Zain, Hisham Mehanna, Rachel Spruce, Wenbin Wei, Ivy Chung, Paul G. Murray, Lee Fah Yap, Ian C. Paterson
Software Mentions: 2
Published: almost 7 years ago

10.3389/fgene.2020.535622

The FpPPR1 Gene Encodes a Pentatricopeptide Repeat Protein That Is Essential for Asexual Development, Sporulation, and Pathogenesis in Fusarium pseudograminearum
Cited by: 2
Author(s): Limin Wang, Shunpei Xie, Yinshan Zhang, Ruijiao Kang, Mengjuan Zhang, Min Wang, Haiyang Li, Linlin Chen, Hongxia Yuan, Shengli Ding, Liang Shen, Honglian Li
Software Mentions: 2
Published: almost 6 years ago

10.3390/ijms21124465

The Splicing Factor SF2 Is Critical for Hyperproliferation and Survival in a TORC1-Dependent Model of Early Tumorigenesis in Drosophila
Cited by: 3
Author(s): Malgorzata Maria Parniewska, Hugo Stocker
Software Mentions: 2
Published: over 6 years ago

10.1186/s10020-021-00362-8

An mRNA assay system demonstrates proteasomal-specific degradation contributes to cardiomyopathic phospholamban null mutation
Cited by: 1
Author(s): Eduarde Rohner, Nevin Witman, Jesper Sohlmér, Erwin De Genst, William E. Louch, Makoto Sahara, Kenneth R. Chien
Software Mentions: 2
Published: about 5 years ago

10.1002/mgg3.729

Gene signature associated with neuro‐endocrine activity predicting prognosis of pancreatic carcinoma
Cited by: 11
Author(s): Ke Chen, Yiping He, Yuan Liu, Xunan Yang
Software Mentions: 2
Published: over 7 years ago

10.3389/fgene.2019.01080

A Mini-Atlas of Gene Expression for the Domestic Goat (Capra hircus)
Cited by: 11
Author(s): Charity Muriuki, Stephen J. Bush, Mazdak Salavati, Mary E. B. McCulloch, Zofia M. Lisowski, Morris Agaba, Appolinaire Djikeng, David Hume, Emily L. Clark
Software Mentions: 2
Published: almost 7 years ago

10.3389/fgene.2017.00123

Drosophila Model for the Analysis of Genesis of LIM-kinase 1-Dependent Williams-Beuren Syndrome Cognitive Phenotypes: INDELs, Transposable Elements of the Tc1/Mariner Superfamily and MicroRNAs
Cited by: 8
Author(s): Е. В. Савватеева-Попова, Aleksandr V. Zhuravlev, Václav Brázda, Г. А. Захаров, A. N. Kaminskaya, А. В. Медведева, Е. А. Никитина, Elena V. Tokmatcheva, Julia F. Dolgaya, Д. А. Куликова, Olga G. Zatsepina, S. Yu. Funikov, Sergei Ryazansky, М. Б. Евгеньев
Software Mentions: 2
Published: about 9 years ago

10.3389/fgene.2018.00165

The Effect of Centrifugal Force in Quantification of Colorectal Cancer-Related mRNA in Plasma Using Targeted Sequencing
Cited by: 11
Author(s): Vivian Weiwen Xue, Simon Siu Man Ng, Wing Wa Leung, Brigette Buig Yue, William C. Cho, Thomas Chi Chuen Au, Allen Chi Shing Yu, Hin Fung Tsang, Sze Chuen Cesar Wong
Software Mentions: 2
Published: over 8 years ago

10.3389/fgene.2021.715840

Systematic Construction and Validation of an RNA-Binding Protein-Associated Prognostic Model for Acute Myeloid Leukemia
Cited by: 2
Author(s): Hongwei Luo, Yingchun Zhang, Nan Hu, Yancheng He, Chengcheng He
Software Mentions: 2
Published: about 5 years ago

10.3390/molecules23112879

Identification of Epigenetic Mechanisms Involved in the Anti-Asthmatic Effects of Descurainia sophia Seed Extract Based on a Multi-Omics Approach
Cited by: 12
Author(s): Su‐Jin Baek, Jin Mi Chun, Tae-Wook Kang, Yun‐Soo Seo, Sung‐Bae Kim, Boseok Seong, Yunji Jang, Ga-Hee Shin, Chul Kim
Software Mentions: 2
Published: almost 8 years ago

10.3390/molecules26133924

A Transcriptomic Approach to the Metabolism of Tetrapyrrolic Photosensitizers in a Marine Annelid
Cited by: 4
Author(s): Maria Leonor Santos, Mariaelena D’Ambrosio, Ana P. Rodrigo, A. Jorge Parola, Pedro M. Costa
Software Mentions: 2
Published: over 5 years ago

10.3389/fgene.2018.00379

SUMO-Targeted Ubiquitin Ligases (STUbLs) Reduce the Toxicity and Abnormal Transcriptional Activity Associated With a Mutant, Aggregation-Prone Fragment of Huntingtin
Cited by: 7
Author(s): Kentaro Ohkuni, Nagesh Pasupala, Jennifer L Peek, Grace Lauren Holloway, Gloria D. Sclar, Reuben Levy-Myers, Richard E. Baker, Munira A. Basrai, Oliver Kerscher
Software Mentions: 2
Published: about 8 years ago

10.3390/molecules26082294

Physiological and Transcriptomic Analysis Provide Insight into Low Temperature Enhancing Hypericin Biosynthesis in Hypericum perforatum
Cited by: 4
Author(s): Hongyan Su, Jie Li, Sijin Chen, Ping Sun, Hua Xing, Deok‐Chun Yang, Xiaona Zhang, Mengfei Li, Jianhe Wei
Software Mentions: 2
Published: over 5 years ago

10.3389/fgene.2013.00178

Evaluating statistical analysis models for RNA sequencing experiments
Cited by: 30
Author(s): Pablo Reeb, Juan P. Steibel
Software Mentions: 2
Published: almost 14 years ago

10.3389/fgene.2019.00710

Transcriptome Analysis Reveals Differential Expression of Genes Regulating Hepatic Triglyceride Metabolism in Pekin Ducks During Dietary Threonine Deficiency
Cited by: 9
Author(s): Yong Jiang, Ming Xie, Wenlei Fan, Jiajia Xue, Zhengkui Zhou, Jing Tang, Chen Guo-hong, Shuisheng Hou
Software Mentions: 2
Published: about 7 years ago

10.3389/fgene.2021.689892

Splicing in the Diagnosis of Rare Disease: Advances and Challenges
Cited by: 31
Author(s): Jenny Lord, Diana Baralle
Software Mentions: 2
Published: over 5 years ago

10.3389/fgene.2021.579800

Whole-Transcriptome Analysis of Yak and Cattle Heart Tissues Reveals Regulatory Pathways Associated With High-Altitude Adaptation
Cited by: 4
Author(s): Hui Wang, Jincheng Zhong, Jikun Wang, Zhixin Chai, Chengfu Zhang, Jinwei Xin, Jiabo Wang, Xin Cai, Zhijuan Wu, Qiumei Ji
Software Mentions: 2
Published: over 5 years ago

10.1128/MCB.00651-17

Multilevel Differential Control of Hormone Gene Expression Programs by hnRNP L and LL in Pituitary Cells
Cited by: 6
Author(s): Lei Lei, Wenguang Cao, Ling Liu, Urmi Das, Yujia Wu, Guodong Liu, Muhammad Sohail, Yi Jen Chen, Jiuyong Xie
Software Mentions: 2
Published: over 8 years ago

10.1186/s12943-020-01184-8

CircLONP2 enhances colorectal carcinoma invasion and metastasis through modulating the maturation and exosomal dissemination of microRNA-17
Cited by: 95
Author(s): Kai Han, Feng Wei Wang, Chenhui Cao, Ling Han, Jie Wei Chen, Ri Xin Chen, Zi Hao Feng, Jie Luo, Xiaoyue Jin, Jin ling Duan, Shu Man Li, Ning Fang, Jing Ping Yun, Xin Yuan Guan, Zhi Zhong Pan, Ping Lan, Rui‐Hua Xu, Dan Xie
Software Mentions: 2
Published: over 6 years ago

10.1186/s12943-020-01259-6

Circular HER2 RNA positive triple negative breast cancer is sensitive to Pertuzumab
Cited by: 83
Author(s): Jie Li, Maoguang Ma, Xuesong Yang, Maolei Zhang, Jixian Luo, Huangkai Zhou, Nunu Huang, Feizhe Xiao, Bingquan Lai, Weiming Lv, Nu Zhang
Software Mentions: 2
Published: about 6 years ago

10.1186/s12943-020-01264-9

Identification of a distinct luminal subgroup diagnosing and stratifying early stage prostate cancer by tissue-based single-cell RNA sequencing
Cited by: 42
Author(s): Xing-Hong Ma, Jinan Guo, Kaisheng Liu, Lipeng Chen, Dale Liu, Shaowei Dong, Jinquan Xia, Qiaoyun Long, Yongjian Yue, Pan Zhao, Fengyan Hu, Zhangang Xiao, Xinghua Pan, Kefeng Xiao, Zhiqiang Cheng, Zunfu Ke, Zhe‐Sheng Chen, Chang Zou
Software Mentions: 2
Published: about 6 years ago

10.3390/ijms19072052

Genome-Wide Characterization and Expression Analyses of Pleurotus ostreatus MYB Transcription Factors during Developmental Stages and under Heat Stress Based on de novo Sequenced Genome
Cited by: 26
Author(s): Lining Wang, Wei Gao, Xiangli Wu, Ming Zhao, Jian Qu, Chenyang Huang, Jinxia Zhang
Software Mentions: 2
Published: over 8 years ago

10.3389/fgene.2019.01122

Linc-GALMD1 Regulates Viral Gene Expression in the Chicken
Cited by: 7
Author(s): Yanghua He, Bo Han, Yi Ding, Huanmin Zhang, Shuang Chang, Li Zhang, Chunfang Zhao, Ning Yang, Jiuzhou Song
Software Mentions: 2
Published: almost 7 years ago

10.1186/s12864-015-1778-8

A comparative analysis of host responses to avian influenza infection in ducks and chickens highlights a role for the interferon-induced transmembrane proteins in viral resistance
Cited by: 83
Author(s): Jacqueline Smith, Nikki Smith, Yu Lan, Ian R. Paton, Maria Weronika Gutowska, H. S. Forrest, Angela Danner, J. Seiler, Paul Digard, Robert G. Webster, David W. Burt
Software Mentions: 2
Published: about 11 years ago

10.1186/s12944-016-0190-y

Fish oil alleviated high-fat diet–induced non-alcoholic fatty liver disease via regulating hepatic lipids metabolism and metaflammation: a transcriptomic study
Cited by: 60
Author(s): Fahu Yuan, Hualin Wang, Yu Tian, Qi Li, Lei He, Na Li, Zhiguo Liu
Software Mentions: 2
Published: over 10 years ago

10.26508/lsa.201800211

Defining the expression of piRNA and transposable elements in<i>Drosophila</i>ovarian germline stem cells and somatic support cells
Cited by: 11
Author(s): Benjamin A. Story, Xing Ma, Kazue L. Ishihara, Hua Li, Kathryn Hall, Allison Peak, Anoja Perera, Jungeun Park, Jeff Haug, Marco Blanchette, Ting Xie
Software Mentions: 2
Published: about 7 years ago

10.26508/lsa.201900533

Distinct signals and immune cells drive liver pathology and glomerulonephritis in ABIN1[D485N] mice
Cited by: 14
Author(s): Sambit K. Nanda, Tsvetana Petrova, Francesco Marchesi, Marek Gierliński, M Razsolkov, Katherine L. Lee, Stephen W. Wright, Vikram Rao, Philip Cohen, J. Simon C. Arthur
Software Mentions: 2
Published: almost 7 years ago

10.1186/s12864-017-3699-1

Comparative analysis of the predicted secretomes of Rosaceae scab pathogens Venturia inaequalis and V. pirina reveals expanded effector families and putative determinants of host range
Cited by: 48
Author(s): Cecilia Deng, Kim M. Plummer, Darcy A. B. Jones, Carl H. Mesarich, Jason Shiller, Adam P. Taranto, Andrew Robinson, P. Kastner, Nathan E. Hall, Matthew D. Templeton, Joanna K. Bowen
Software Mentions: 2
Published: over 9 years ago

10.26508/lsa.201900529

Oscillatory cAMP signaling rapidly alters H3K4 methylation
Cited by: 5
Author(s): Tyler C. Huff, Vladimir Camarena, David W. Sant, Zachary Wilkes, Derek Van Booven, Allegra T. Aron, Ryan K Muir, Adam R. Renslo, Christopher J. Chang, Paula V. Monje, Gaofeng Wang
Software Mentions: 2
Published: almost 7 years ago

10.3389/fimmu.2020.609624

Characterization and Monitoring of Antigen-Responsive T Cell Clones Using T Cell Receptor Gene Expression Analysis
Cited by: 4
Author(s): Sabrina Pollastro, Marie de Bourayne, G Balzaretti, Aldo Jongejan, Barbera D. C. van Schaik, Ilse T.G. Niewold, Antoine H. C. van Kampen, Bernard Maillére, Niek de Vries
Software Mentions: 2
Published: over 5 years ago

10.3389/fimmu.2021.630318

Adenylate Kinase 4 Promotes Inflammatory Gene Expression via Hif1α and AMPK in Macrophages
Cited by: 15
Author(s): Wei-Yao Chin, Chi-Ying He, Tsun Wai Chow, Qi-You Yu, Liang‐Chuan Lai, Shi‐Chuen Miaw
Software Mentions: 2
Published: over 5 years ago

10.3389/fimmu.2021.691997

Phosphoinositide 3-Kinase p110 Delta Differentially Restrains and Directs Naïve Versus Effector CD8+ T Cell Transcriptional Programs
Cited by: 6
Author(s): Laura Spinelli, Julia M. Marchingo, Aneela Nomura, Marcos Damasio, Doreen A. Cantrell
Software Mentions: 2
Published: over 5 years ago

10.26508/lsa.201900536

Virus-induced transposable element expression up-regulation in human and mouse host cells
Cited by: 35
Author(s): Marissa Macchietto, Ryan A. Langlois, Steven S. Shen
Software Mentions: 2
Published: almost 7 years ago

10.3389/fimmu.2021.684430

CD22 Blockage Restores Age-Related Impairments of Microglia Surveillance Capacity
Cited by: 12
Author(s): Vanessa Aires, Claire Coulon-Bainier, Anto Pavlovic, Martin Ebeling, Roland Schmucki, Christophe Schweitzer, Erich Kueng, Simon Gutbier, Eva Harde
Software Mentions: 2
Published: over 5 years ago

10.26508/lsa.201900335

<i>let-7</i>coordinates the transition to adulthood through a single primary and four secondary targets
Cited by: 24
Author(s): Florian Aeschimann, Anca Neagu, Magdalene Rausch, Helge Großhans
Software Mentions: 2
Published: over 7 years ago

10.26508/lsa.201800281

Dietary restriction induces posttranscriptional regulation of longevity genes
Cited by: 22
Author(s): Jarod Rollins, Dan Shaffer, Santina Snow, Pankaj Kapahi, Aric N. Rogers
Software Mentions: 2
Published: over 7 years ago

10.3389/fimmu.2019.00870

The Axial Organ and the Pharynx Are Sites of Hematopoiesis in the Sea Urchin
Cited by: 23
Author(s): Preethi Golconda, Katherine M. Buckley, Caroline R. Reynolds, Jennifer P. Romanello, L. Courtney Smith
Software Mentions: 2
Published: over 7 years ago

10.3389/fimmu.2021.717785

Long Noncoding RNA RP11-115N4.1 Promotes Inflammatory Responses by Interacting With HNRNPH3 and Enhancing the Transcription of HSP70 in Unexplained Recurrent Spontaneous Abortion
Cited by: 6
Author(s): Meilan Liu, Xiaoyue Sun, Liqiong Zhu, Menglan Zhu, Kewen Deng, Xiaolu Nie, Hanjie Mo, Tao Du, Bingqian Huang, Lihao Hu, Liuhong Liang, Dongyan Wang, Yinger Luo, Jun Yi, Jianping Zhang, Xingming Zhong, Chenglong Cao, Hui Chen
Software Mentions: 2
Published: about 5 years ago

10.26508/lsa.201800233

m⁶A-mRNA methylation regulates cardiac gene expression and cellular growth
Cited by: 91
Author(s): Vivien Kmietczyk, Eva Riechert, Laura Kalinski, Etienne Boileau, Ellen Malovrh, Brandon Malone, Agnieszka Górska, Christoph Hofmann, Eshita Varma, Lonny Jürgensen, Verena Kamuf-Schenk, Janine Altmüller, Rewati Tappu, Martin Busch, Patrick Most, Hugo A. Katus, Christoph Dieterich, Mirko Völkers
Software Mentions: 2
Published: over 7 years ago

10.3389/fimmu.2020.559332

Polyunsaturated Fatty Acids Influence LPS-Induced Inflammation of Fish Macrophages Through Differential Modulation of Pathogen Recognition and p38 MAPK/NF-κB Signaling
Cited by: 14
Author(s): Qingfei Li, Kun Chen, Mengjiao Wu, Dan Xu, Kangsen Mai, Qinghui Ai
Software Mentions: 2
Published: about 6 years ago

10.3389/fimmu.2021.641886

The Chromatin Accessibility Landscape of Peripheral Blood Mononuclear Cells in Patients With Systemic Lupus Erythematosus at Single-Cell Resolution
Cited by: 5
Author(s): Haiyan Yu, Xiaoping Hong, Hongwei Wu, Fengping Zheng, Zhipeng Zeng, Weier Dai, Yin Li, Dongzhou Liu, Donge Tang, Yong Dai
Software Mentions: 2
Published: over 5 years ago

10.3390/ijms19103192

Transcriptome Profiling of Two Ornamental and Medicinal Papaver Herbs
Cited by: 8
Author(s): Jae-Hyeon Oh, Younhee Shin, In-Joong Ha, Min Young Lee, Seok‐Geun Lee, Byeong-Chul Kang, Dongsoo Kyeong, Dowan Kim
Software Mentions: 2
Published: about 8 years ago

10.3389/fimmu.2021.619932

Single-Cell Sequencing Reveals the Transcriptome and TCR Characteristics of pTregs and in vitro Expanded iTregs
Cited by: 7
Author(s): Zhenzhen Hui, Jiali Zhang, Yu Zheng, Lili Yang, Wenwen Yu, Yang An, Feng Wei, Xiubao Ren
Software Mentions: 2
Published: over 5 years ago

10.3390/life11040285

Rice Transcriptome Analysis Reveals Nitrogen Starvation Modulates Differential Alternative Splicing and Transcript Usage in Various Metabolism-Related Genes
Cited by: 6
Author(s): Saurabh Chaudhary, Meenu Kalkal
Software Mentions: 2
Published: over 5 years ago

10.1186/s12933-017-0567-x

Joint analysis of left ventricular expression and circulating plasma levels of Omentin after myocardial ischemia
Cited by: 13
Author(s): Louis A. Saddic, Sarah M. Nicoloro, Olga T. Gupta, Michael P. Czech, Joshua M. Gorham, Stanton K. Shernan, Christine E. Seidman, J. G. Seidman, Sary F. Aranki, Simon C. Body, Timothy P. Fitzgibbons, Jochen D. Muehlschlegel
Software Mentions: 2
Published: over 9 years ago

10.1002/cam4.2525

Lymph node metastasis in lung squamous cell carcinoma and identification of metastasis‐related genes based on the Cancer Genome Atlas
Cited by: 7
Author(s): Ming Dong, Hao Gong, Tong Li, Xin Li, Jinghao Liu, Hongbing Zhang, Minghui Liu, Gang Chen, Hongyu Liu, Jun Chen
Software Mentions: 2
Published: about 7 years ago

10.3389/fimmu.2019.02873

Efficient and Robust NK-Cell Transduction With Baboon Envelope Pseudotyped Lentivector
Cited by: 78
Author(s): Aurélien Colamartino, William Lemieux, Panojot Bifsha, Simon Nicoletti, Nitin Chakravarti, Joaquín Sanz, H Roméro, Silvia Selleri, Kathie Béland, Mélanie Guiot, Camille Tremblay‐Laganière, Renée Dicaire, Luis B. Barreiro, Dean A. Lee, Els Verhoeyen, Élie Haddad
Software Mentions: 2
Published: almost 7 years ago

10.3389/fimmu.2021.615859

Integrated Transcriptome Profiling Revealed That Elevated Long Non-Coding RNA-AC007278.2 Expression Repressed CCR7 Transcription in Systemic Lupus Erythematosus
Cited by: 14
Author(s): Yi You, Xingwang Zhao, WU Yu-hua, Jiangming Mao, Lan Ge, Junkai Guo, Chunrong Zhao, Dong Chen, Zhiqiang Song
Software Mentions: 2
Published: over 5 years ago

10.3390/ijms21176424

Antibiotic Treatment Prior to Injury Improves Post-Traumatic Osteoarthritis Outcomes in Mice
Cited by: 16
Author(s): Melanie E. Mendez, Deepa K. Murugesh, Aimy Sebastian, Nicholas R. Hum, Summer A. McCloy, Edward A. Kuhn, Blaine A. Christiansen, Gabriela G. Loots
Software Mentions: 2
Published: about 6 years ago

10.1002/cam4.3047

Identification of cancer stem cell characteristics in liver hepatocellular carcinoma by WGCNA analysis of transcriptome stemness index
Cited by: 69
Author(s): Kunhao Bai, Siyuan He, Lingling Shu, Weida Wang, Sensen Lin, Qian-Yi Zhang, Liang Li, Lei Cheng, Yong Dai
Software Mentions: 2
Published: over 6 years ago

10.1002/cam4.2232

CLEC3A, MMP7, and LCN2 as novel markers for predicting recurrence in resected G1 and G2 pancreatic neuroendocrine tumors
Cited by: 17
Author(s): Masami Minemura, Takamasa Oono, Nao Fujimori, Takehiro Takaoka, Ken Kawabe, Yoshihiro Miyasaka, Takao Ohtsuka, Daisuke Saito, Masafumi Nakamura, Yasuyuki Ohkawa, Yoshinao Oda, Mikita Suyama, Tetsuhide Ito, Yoshihiro Ogawa
Software Mentions: 2
Published: over 7 years ago

10.1002/cam4.3361

Identification of potential prognostic small nucleolar RNA biomarkers for predicting overall survival in patients with sarcoma
Cited by: 8
Author(s): Jianwei Liu, Xiwen Liao, Xianze Zhu, Peizhen Lv, Rong Li
Software Mentions: 2
Published: about 6 years ago

10.3389/fimmu.2018.01248

Transcriptomics of the Vaccine Immune Response: Priming With Adjuvant Modulates Recall Innate Responses After Boosting
Cited by: 22
Author(s): Francesco Santoro, Elena Pettini, Dmitri Kazmin, Annalisa Ciabattini, Fabio Fiorino, Gregor D. Gilfillan, Ida M. Evenroed, Peter Andersen, Gianni Pozzi, Donata Medaglini
Software Mentions: 2
Published: over 8 years ago

10.3389/fimmu.2020.01136

Mucosal-Associated Invariant T Cells Develop an Innate-Like Transcriptomic Program in Anti-mycobacterial Responses
Cited by: 14
Author(s): Manju Sharma, Shuangmin Zhang, Liang Niu, David Lewinsohn, Xiang Zhang, Shouxiong Huang
Software Mentions: 2
Published: over 6 years ago

10.3390/ijms20020369

Comprehensive Analysis of Differentially Expressed Unigenes under NaCl Stress in Flax (Linum usitatissimum L.) Using RNA-Seq
Cited by: 24
Author(s): Jianzhong Wu, Qian Zhao, Guangwen Wu, Hongmei Yuan, Yan Ma, Hong Lin, Liyan Pan, Suiyan Li, Dequan Sun
Software Mentions: 2
Published: almost 8 years ago

10.3389/fimmu.2015.00023

Analysis of the Bovine Monocyte-Derived Macrophage Response to Mycobacterium avium Subspecies Paratuberculosis Infection Using RNA-seq
Cited by: 31
Author(s): Maura E. Casey, Kieran G. Meade, Nicolas C. Nalpas, Maria Taraktsoglou, John A. Browne, Kate E. Killick, Stephen D. E. Park, Eamonn Gormley, Karsten Hokamp, David A. Magee, David E. MacHugh
Software Mentions: 2
Published: over 11 years ago

10.1002/cam4.3122

Identification of the key genes associated with chemotherapy sensitivity in ovarian cancer patients
Cited by: 4
Author(s): Hui Zheng, Meiqin Zhang, Shuang Ma, Wenting Yang, Shuanshuan Xie, Yanchun Wang, Yixuan Liu, Jinyan Kai, Qian Ma, Renquan Lu, Lin Guo
Software Mentions: 2
Published: over 6 years ago

10.3389/fimmu.2020.607891

MAPKAP Kinase-2 Drives Expression of Angiogenic Factors by Tumor-Associated Macrophages in a Model of Inflammation-Induced Colon Cancer
Cited by: 12
Author(s): Lucia Suárez‐López, Yi Wen Kong, Ganapathy Sriram, Jesse C. Patterson, Samantha G. Rosenberg, Sandra Morandell, Kevin M. Haigis, Michael B. Yaffe
Software Mentions: 2
Published: over 5 years ago

10.3389/fimmu.2021.672700

Host-Parasite Interaction of Atlantic salmon (Salmo salar) and the Ectoparasite Neoparamoeba perurans in Amoebic Gill Disease
Cited by: 18
Author(s): Natasha A. Botwright, Amin R. Mohamed, Joel Slinger, Paula C. Lima, James W. Wynne
Software Mentions: 2
Published: over 5 years ago

10.1186/s12864-018-5261-1

RNA-Seq transcriptome analysis of breast muscle in Pekin ducks supplemented with the dietary probiotic Clostridium butyricum
Cited by: 12
Author(s): Yanhan Liu, Yaxiong Jia, Cun Liu, Limin Ding, Zhaofei Xia
Software Mentions: 2
Published: almost 8 years ago

10.1002/cam4.4095

Immunophenotype‐associated gene signature in ductal breast tumors varies by receptor subtype, but the expression of individual signature genes remains consistent
Cited by: 4
Author(s): Michael Behring, Yuanfan Ye, Amr Elkholy, Prachi Bajpai, Sumit Agarwal, Hyung‐Gyoon Kim, Akinyemi I. Ojesina, Howard W. Wiener, Upender Manne, Sadeep Shrestha, Ana I. Vázquez
Software Mentions: 2
Published: over 5 years ago

10.3389/fimmu.2017.00876

Transcriptional Profiling of Midguts Prepared from Trypanosoma/T. congolense-Positive Glossina palpalis palpalis Collected from Two Distinct Cameroonian Foci: Coordinated Signatures of the Midguts’ Remodeling As T. congolense-Supportive Niches
Cited by: 9
Author(s): Jean Marc Tsagmo Ngoune, Flobert Njiokou, Béatrice Loriod, Ginette Irma Kame‐Ngasse, Nicolas Fernandez-Nunez, Claire Rioualen, Jacques van Helden, Anne Geiger
Software Mentions: 2
Published: over 9 years ago

10.1002/cam4.3375

Screening and bioinformatics analysis of a ceRNA network based on the circular RNAs, miRNAs, and mRNAs in pan‐cancer
Cited by: 8
Author(s): Zhanghan Chen, Jie Huang, Yinchang Feng, Zehuan Li, Ying Jiang
Software Mentions: 2
Published: about 6 years ago

10.1002/cam4.2642

A network‐based predictive gene expression signature for recurrence risks in stage II colorectal cancer
Cited by: 14
Author(s): Wenjing Yang, Haibo Wang, Wen-da Wang, P Y Bai, Lu Hongxia, Chang‐He Sun, Zishen Liu, Ding‐Kun Guan, Guowang Yang, Gan‐Lin Zhang
Software Mentions: 2
Published: almost 7 years ago

10.3389/fimmu.2021.650977

T Cell-Intrinsic CDK6 Is Dispensable for Anti-Viral and Anti-Tumor Responses In Vivo
Cited by: 3
Author(s): Klara R. Klein, Agnieszka Witalisz‐Siepracka, Dagmar Gotthardt, Benedikt Agerer, Felix Locker, Reinhard Grausenburger, Vanessa M. Knab, Andréas Bergthaler, Veronika Sexl
Software Mentions: 2
Published: over 5 years ago

10.3389/fimmu.2020.01073

Prediabetes Induced by a Single Autoimmune B Cell Clone
Cited by: 1
Author(s): Nathaniel Phillips, Eugene Ke, Amy Nham, Maximilian Seidl, Brent Freeman, Justin R. Abadejos, Changchun Xiao, David Nemazee, Manching Ku, Oktay Kirak
Software Mentions: 2
Published: over 6 years ago

10.3389/fimmu.2020.568565

Dynamic Transcriptome Reveals the Mechanism of Liver Injury Caused by DHAV-3 Infection in Pekin Duck
Cited by: 4
Author(s): Junting Cao, Yunsheng Zhang, Ying Chen, Shuang Liang, Dapeng Liu, Wenlei Fan, Yaxi Xu, Hehe Liu, Zhengkui Zhou, Xiaolin Liu, Shuisheng Hou
Software Mentions: 2
Published: almost 6 years ago

10.1186/s12864-015-2186-9

Transcriptome profiling of differentially expressed genes in floral buds and flowers of male sterile and fertile lines in watermelon
Cited by: 53
Author(s): Sun-Ju Rhee, Minseok Seo, Yoonjeong Jang, Seoae Cho, Gung Pyo Lee
Software Mentions: 2
Published: almost 11 years ago

10.1186/s12935-019-0928-5

A nomogram based on 9-lncRNAs signature for improving prognostic prediction of clear cell renal cell carcinoma
Cited by: 24
Author(s): Wen Jiang, Qing Guo, Chenghe Wang, Yu Zhu
Software Mentions: 2
Published: about 7 years ago

10.1186/s12935-019-0934-7

Long non-coding RNA LINC00485 acts as a microRNA-195 sponge to regulate the chemotherapy sensitivity of lung adenocarcinoma cells to cisplatin by regulating CHEK1
Cited by: 21
Author(s): Wei Zuo, Wei Zhang, Fei Xu, Jing Zhou, Wei Bai
Software Mentions: 2
Published: about 7 years ago

10.3389/fonc.2020.00316

Promoter-Level Transcriptome Identifies Stemness Associated With Relatively High Proliferation in Pancreatic Cancer Cells
Cited by: 0
Author(s): Ru Chen, Aiko Sugiyama, Naoyuki Kataoka, Masahiro Sugimoto, Shoko Yokoyama, Akira Fukuda, Shigeo Takaishi, Hiroshi Seno
Software Mentions: 2
Published: over 6 years ago

10.3389/fonc.2021.625271

Establishment of a Novel Risk Score System of Immune Genes Associated With Prognosis in Esophageal Carcinoma
Cited by: 9
Author(s): Zhenghua Fei, Rongrong Xie, Zhi Chen, Junhui Xie, Yuyang Gu, Yue Zhou, Tongpeng Xu
Software Mentions: 2
Published: over 5 years ago

10.1186/s12935-020-1140-3

Identification of molecular markers associated with the progression and prognosis of endometrial cancer: a bioinformatic study
Cited by: 12
Author(s): Jinhui Liu, Mingming Feng, Siyue Li, Song Nie, Hui Wang, Shan Wu, Jiangnan Qiu, Jie Zhang, Wenjun Cheng
Software Mentions: 2
Published: over 6 years ago

10.3389/fonc.2020.00566

A Novel Scoring System for Risk Assessment of Elderly Patients With Cytogenetically Normal Acute Myeloid Leukemia Based on Expression of Three AQP1 DNA Methylation-Associated Genes
Cited by: 3
Author(s): Xin Yin, Huapin Huang, Sufang Huang, Aihua Xu, Fengjuan Fan, Shanshan Luo, Han Yan, Lei Chen, Chaoyang Sun, Yu Hu
Software Mentions: 2
Published: over 6 years ago

10.1186/s12935-020-01274-z

Random-forest algorithm based biomarkers in predicting prognosis in the patients with hepatocellular carcinoma
Cited by: 21
Author(s): Ling‐Yun Guo, Zhenjiang Wang, Yuanyuan Du, Jie Mao, Junqiang Zhang, Zeyuan Yu, Jiwu Guo, Jun Zhao, Huinian Zhou, Haitao Wang, Yanmei Gu, Yumin Li
Software Mentions: 2
Published: over 6 years ago

10.3389/fonc.2021.587744

Prognostic Implication of the Expression Level of PECAM-1 in Non-small Cell Lung Cancer
Cited by: 4
Author(s): Shanshan Cao, Yue Wang, Jingwen Li, Xuxinyi Ling, Yao Zhang, Yan Zhou, Hua Zhong
Software Mentions: 2
Published: over 5 years ago

10.1186/s12935-020-1134-1

Construction of a circRNA-miRNA-mRNA network based on competitive endogenous RNA reveals the function of circRNAs in osteosarcoma
Cited by: 32
Author(s): Yu Qiu, Pu Chen, Yanchao Li, Baochuang Qi
Software Mentions: 2
Published: over 6 years ago

10.1186/s12935-021-01789-z

Construction of a competitive endogenous RNA network and analysis of potential regulatory axis targets in glioblastoma
Cited by: 5
Author(s): Kai Yu, Huan Yang, Qiao‐Li Lv, Li-chong Wang, Zilong Tan, Zhe Zhang, Yulong Ji, Qian-xia Lin, Junjun Chen, Wei He, Zhe Chen, Xiaoli Shen
Software Mentions: 2
Published: over 5 years ago

10.3390/ijms20112628

Transcriptome Analyses Reveal Effects of Vitamin C-Treated Donor Cells on Cloned Bovine Embryo Development
Cited by: 11
Author(s): Lei Zhang, Yan Zhang, Zhuo Han, Jingshuai Fang, Huanhuan Chen, Zekun Guo
Software Mentions: 2
Published: over 7 years ago

10.1186/s12935-021-01824-z

Immune subtyping for pancreatic cancer with implication in clinical outcomes and improving immunotherapy
Cited by: 13
Author(s): Jing-Kai Liu, Qiaofei Liu, Xiang Zhang, Ming Cui, Tong Li, Yalu Zhang, Quan Liao
Software Mentions: 2
Published: over 5 years ago

10.1186/1471-2164-14-797

The planarian regeneration transcriptome reveals a shared but temporally shifted regulatory program between opposing head and tail scenarios
Cited by: 53
Author(s): Damian Kao, Daniel A. Felix, A. Aziz Aboobaker
Software Mentions: 2
Published: almost 13 years ago

10.3389/fonc.2020.00307

Gene Expression Profiling of B Cell Lymphoma in Dogs Reveals Dichotomous Metabolic Signatures Distinguished by Oxidative Phosphorylation
Cited by: 4
Author(s): Ying Wu, Yu‐Mei Chang, Gerry Polton, Anneliese Stell, Balázs Szladovits, Michael Macfarlane, Laureen M. Peters, Simon L. Priestnall, Nicholas J. Bacon, Kelvin Kow, Sarah A. Stewart, Eshita Sharma, Michelle R. Goulart, John G. Gribben, Dong Xia, Oliver A. Garden
Software Mentions: 2
Published: over 6 years ago

10.3389/fonc.2020.564306

Immune Cluster and PPI Network Analyses Identified CXCR3 as a Key Node of Immunoregulation in Head and Neck Cancer
Cited by: 2
Author(s): Ping Wang, Yanli Wang, Yufei Jiang, Minghong Li, Guang Li, Qiao Qiao
Software Mentions: 2
Published: almost 6 years ago

10.3389/fonc.2019.00568

Dynamic Changes in Gene Mutational Landscape With Preservation of Core Mutations in Mantle Cell Lymphoma Cells
Cited by: 7
Author(s): Qian Zhang, Hong Y Wang, Xiaobin Liu, Michael H. Roth, Alex A. Shestov, Seung‐Cheol Lee, Kanika Jain, Craig Soderquist, Qun-Bin Xiong, Marco Ruella, Honore T. Strauser, Jerry D. Glickson, Stephen J. Schuster, Andrzej Ptasznik, Mariusz A. Wasik
Software Mentions: 2
Published: over 7 years ago

10.1186/s12935-019-0884-0

Identification of potential key genes and pathways predicting pathogenesis and prognosis for triple-negative breast cancer
Cited by: 26
Author(s): Xuemei Lv, Miao He, Yimeng Zhao, Liwen Zhang, Wenjing Zhu, Longyang Jiang, Yuanyuan Yan, Yue Fan, Hongfeng Zhao, Shubo Zhou, Heyao Ma, Yihua Sun, Xiang Li, Hong Xu, Minjie Wei
Software Mentions: 2
Published: over 7 years ago

10.3389/fonc.2021.608433

A Survival-Related Competitive Endogenous RNA Network of Prognostic lncRNAs, miRNAs, and mRNAs in Wilms Tumor
Cited by: 7
Author(s): Hengchen Liu, Mingzhao Zhang, Manyu Shi, Tingting Zhang, Zenan Zhang, QingBo Cui, Shaoyu Yang, ZhaoZhu Li
Software Mentions: 2
Published: over 5 years ago

10.1186/s12935-018-0519-x

RRS1 gene expression involved in the progression of papillary thyroid carcinoma
Cited by: 17
Author(s): Feng Chen, Yichen Jin, Feng Li, Jie Zhang, Jun Tai, Jin Shi, Yizhi Yu, Jie Lu, Shengcai Wang, Xin Li, Ping Chu, Shujing Han, Shujun Cheng, Yongli Guo
Software Mentions: 2
Published: over 8 years ago

10.3390/ijms20122898

Transcriptome-Based Analysis Reveals a Crucial Role of BxGPCR17454 in Low Temperature Response of Pine Wood Nematode (Bursaphelenchus xylophilus)
Cited by: 9
Author(s): Bowen Wang, Xin Hao, Jiayao Xu, Yan Ma, Ling Ma
Software Mentions: 2
Published: over 7 years ago

10.3390/ijms20143468

Interleukin (IL)-22 from IL-20 Subfamily of Cytokines Induces Colonic Epithelial Cell Proliferation Predominantly through ERK1/2 Pathway
Cited by: 26
Author(s): Md. Moniruzzaman, Ran Wang, Varinder Jeet, Michael A. McGuckin, Sumaira Z. Hasnain
Software Mentions: 2
Published: over 7 years ago

10.1016/j.ccell.2017.11.001

Antibody Tumor Targeting Is Enhanced by CD27 Agonists through Myeloid Recruitment
Cited by: 51
Author(s): Anna H. Turaj, Khiyam Hussain, Kerry L. Cox, Matthew Rose-Zerilli, James Testa, Lekh N. Dahal, H T Claude Chan, Sonya James, Vikki L Field, Matthew Carter, Hyung J. Kim, Jonathan West, Lawrence J. Thomas, Lizhen He, Tibor Keler, Peter Johnson, Aymen Al‐Shamkhani, Stephen M. Thirdborough, Stephen A. Beers, Mark S. Cragg, Martin J. Glennie, Sean H. Lim
Software Mentions: 2
Published: almost 9 years ago