Projects: bioconductor: edgeR
https://packages.ecosyste.ms/registries/bioconductor.org/packages/edgeR
Empirical Analysis of Digital Gene Expression Data in R
3 versions
Latest release: about 3 years ago
166 dependent packages
2,704,225 downloads total
Science Score: 100/100
Starting Score: 100 points
Bonuses:
-
+16
Academic maintainer emails
2 maintainers with academic email addresses
Very Likely Science (100)
Papers Mentioning edgeR 6,568
10.18632/oncotarget.26345
The estrogen receptor variants β2 and β5 induce stem cell characteristics and chemotherapy resistance in prostate cancer through activation of hypoxic signalingCited by: 15
Author(s): Michelle Faria, Peter D.A. Shepherd, Yinghong Pan, Satabdi Chatterjee, Nora M. Navone, Jan Åke Gustafsson, Anders Ström
Software Mentions: 2
Published: almost 8 years ago
10.1038/s41598-020-74687-5
Evaluation of blood gene expression levels in facioscapulohumeral muscular dystrophy patientsCited by: 10
Author(s): Mirko Signorelli, Amanda G. Mason, Karlien Mul, Teresinha Evangelista, Hailiang Mei, N.C. Voermans, Stephen J. Tapscott, Roula Tsonaka, B.G.M. van Engelen, Silvère M. van der Maarel, Pietro Spitali
Software Mentions: 2
Published: about 6 years ago
10.1038/s41598-020-74800-8
A missense mutation in the RSRSP stretch of Rbm20 causes dilated cardiomyopathy and atrial fibrillation in miceCited by: 23
Author(s): Kensuke Ihara, Tetsuo Sasano, Yuichi Hiraoka, Marina Togo-Ohno, Yurie Soejima, Motoji Sawabe, Megumi Tsuchiya, Hidesato Ogawa, Tetsushi Furukawa, Hidehito Kuroyanagi
Software Mentions: 2
Published: about 6 years ago
10.1186/s12935-019-0884-0
Identification of potential key genes and pathways predicting pathogenesis and prognosis for triple-negative breast cancerCited by: 26
Author(s): Xuemei Lv, Miao He, Yimeng Zhao, Liwen Zhang, Wenjing Zhu, Longyang Jiang, Yuanyuan Yan, Yue Fan, Hongfeng Zhao, Shubo Zhou, Heyao Ma, Yihua Sun, Xiang Li, Hong Xu, Minjie Wei
Software Mentions: 2
Published: over 7 years ago
10.1186/s12935-018-0519-x
RRS1 gene expression involved in the progression of papillary thyroid carcinomaCited by: 17
Author(s): Feng Chen, Yichen Jin, Feng Li, Jie Zhang, Jun Tai, Jin Shi, Yizhi Yu, Jie Lu, Shengcai Wang, Xin Li, Ping Chu, Shujing Han, Shujun Cheng, Yongli Guo
Software Mentions: 2
Published: over 8 years ago
10.1016/j.ccell.2017.11.001
Antibody Tumor Targeting Is Enhanced by CD27 Agonists through Myeloid RecruitmentCited by: 51
Author(s): Anna H. Turaj, Khiyam Hussain, Kerry L. Cox, Matthew Rose-Zerilli, James Testa, Lekh N. Dahal, H T Claude Chan, Sonya James, Vikki L Field, Matthew Carter, Hyung J. Kim, Jonathan West, Lawrence J. Thomas, Lizhen He, Tibor Keler, Peter Johnson, Aymen Al‐Shamkhani, Stephen M. Thirdborough, Stephen A. Beers, Mark S. Cragg, Martin J. Glennie, Sean H. Lim
Software Mentions: 2
Published: almost 9 years ago
10.1038/s41598-020-76574-5
Gene-regulatory network analysis of ankylosing spondylitis with a single-cell chromatin accessible assayCited by: 9
Author(s): Haiyan Yu, Hongwei Wu, Fengping Zheng, Chaowei Zhu, Yin Li, Weier Dai, Dongzhou Liu, Donge Tang, Xiaoping Hong, Yong Dai
Software Mentions: 2
Published: almost 6 years ago
10.1038/s41598-020-76879-5
The effect of Rbfox2 modulation on retinal transcriptome and visual functionCited by: 6
Author(s): Lin Gu, Riki Kawaguchi, Joseph Caprioli, Natik Piri
Software Mentions: 2
Published: almost 6 years ago
10.1111/cns.13661
Normalization of non‐canonical Wnt signalings does not compromise blood‐brain barrier protection conferred by upregulating endothelial Wnt/β‐catenin signaling following ischemic strokeCited by: 5
Author(s): Ya-Bin Ji, Tianxi Wang, Qiang Gao, Xiaowen Huang, Junlei Chang
Software Mentions: 2
Published: over 5 years ago
10.1093/bib/bbv107
Systematic dissection of dysregulated transcription factor–miRNA feed-forward loops across tumor typesCited by: 45
Author(s): Wei Jiang, Ramkrishna Mitra, Lin Chen, Quan Wang, Feixiong Cheng, Zhongming Zhao
Software Mentions: 2
Published: almost 11 years ago
10.1186/s13058-019-1177-1
Neoadjuvant neratinib promotes ferroptosis and inhibits brain metastasis in a novel syngeneic model of spontaneous HER2+ve breast cancer metastasisCited by: 79
Author(s): Aadya Nagpal, Richard P. Redvers, Xiawei Ling, Scott Ayton, Miriam Fuentes, Elnaz Tavancheh, Irmina Diala, Alshad S. Lalani, Sherene Loi, Steven David, Robin L. Anderson, Yvonne E. Smith, Delphine Mérino, Delphine Denoyer, Normand Pouliot
Software Mentions: 2
Published: about 7 years ago
10.1038/s41598-020-76960-z
Identification of the HECT E3 ligase UBR5 as a regulator of MYC degradation using a CRISPR/Cas9 screenCited by: 21
Author(s): Lina Schukur, Tamara Zimmermann, Ole Niewoehner, Gráinne Kerr, Scott Gleim, Beatrice Bauer-Probst, Britta Knapp, Giorgio Galli, Xueya Liang, Angelica Mendiola, John S. Reece‐Hoyes, Melivoia Rapti, Inês Barbosa, Markus Reschke, Thomas Radimerski, Claudio R. Thoma
Software Mentions: 2
Published: almost 6 years ago
10.1186/s13058-015-0585-0
Integration of microRNA signatures of distinct mammary epithelial cell types with their gene expression and epigenetic portraitsCited by: 29
Author(s): Bhupinder Pal, Yunshun Chen, Andrew G. Bert, Yifang Hu, Julie Sheridan, Tamara Beck, Wei Shi, Keith Satterley, Paul Jamieson, Gregory J. Goodall, Geoffrey J. Lindeman, Gordon K. Smyth, Jane E. Visvader
Software Mentions: 2
Published: over 11 years ago
10.1186/s13058-019-1241-x
Anillin regulates breast cancer cell migration, growth, and metastasis by non-canonical mechanisms involving control of cell stemness and differentiationCited by: 29
Author(s): Dongdong Wang, Nayden G. Naydenov, Mikhail G. Dozmorov, Jennifer E. Koblinski, Andrei I. Ivanov
Software Mentions: 2
Published: almost 7 years ago
10.1038/s41598-020-78452-6
The potential role of Arhgef33 RhoGEF in foveal development in the zebra finch retinaCited by: 7
Author(s): T Sugiyama, Haruka Yamamoto, Tetsuo Kon, Taro Chaya, Yoshihiro Omori, Yutaka Suzuki, Kentaro Abe, Dai Watanabe, Takahisa Furukawa
Software Mentions: 2
Published: almost 6 years ago
10.1038/s41598-020-79313-y
Transcriptional profiles of human islet and exocrine endothelial cells in subjects with or without impaired glucose metabolismCited by: 4
Author(s): Ann‐Beth Jonsson, A. Hedin, Malin Müller, Oskar Skog, Olle Korsgren
Software Mentions: 2
Published: almost 6 years ago
10.1038/s41598-020-79165-6
Lipid metabolism in Calanus finmarchicus is sensitive to variations in predation risk and food availabilityCited by: 0
Author(s): Elise Skottene, Ann M. Tarrant, Dag Altin, Rolf Erik Olsen, Marvin Choquet, Kristina Øie Kvile
Software Mentions: 2
Published: almost 6 years ago
10.1186/s13058-019-1222-0
Combination of mTORC1/2 inhibitor vistusertib plus fulvestrant in vitro and in vivo targets oestrogen receptor-positive endocrine-resistant breast cancerCited by: 11
Author(s): Sunil Pancholi, Mariana Ferreira Leal, Ricardo Ribas, Nikiana Simigdala, Eugene F. Schuster, Sophie Château-Joubert, Lila Zabaglo, Margaret Hills, Andrew Dodson, Qiong Gao, Stephen Johnston, Mitch Dowsett, Sabina C. Cosulich, Elisabetta Maragoni, Lesley-Ann Martin
Software Mentions: 2
Published: almost 7 years ago
10.1038/s41598-020-80741-z
Gene expression and functional abnormalities in XX/Sry Leydig cellsCited by: 3
Author(s): Shogo Yanai, Takashi Baba, Kai Inui, Kanako Miyabayashi, Seongwoo Han, Miki Inoue, Fumiya Takahashi, Masami Kanai‐Azuma, Yasuyuki Ohkawa, Man Ho Choi, Ken Ichirou Morohashi
Software Mentions: 2
Published: almost 6 years ago
10.1186/s13058-016-0735-z
MicroRNA expression and gene regulation drive breast cancer progression and metastasis in PyMT miceCited by: 14
Author(s): Rubén Nogales-Cadenas, Ying Cai, Jhih Rong Lin, Quanwei Zhang, Wen Zhang, Cristina Montagna, Zhengdong D. Zhang
Software Mentions: 2
Published: over 10 years ago
10.1038/s41598-020-78654-y
Multiplex gene and phenotype network to characterize shared genetic pathways of epilepsy and autismCited by: 24
Author(s): Jacqueline Peng, Yunyun Zhou, Kai Wang
Software Mentions: 2
Published: almost 6 years ago
10.18632/oncotarget.27955
Genome wide DNA methylation landscape reveals glioblastoma’s influence on epigenetic changes in tumor infiltrating CD4+ T cellsCited by: 13
Author(s): Marpe Bam, Sreenivasulu Chintala, Kaleigh Fetcko, Brooke Carmen Williamsen, Seema Siraj, Sheng Liu, Jun Wan, Xiaoling Xuei, Yunlong Liu, Adam Leibold, Mahua Dey
Software Mentions: 2
Published: over 5 years ago
10.1038/s41598-021-81471-6
Identification of potential key genes and pathways associated with the Pashmina fiber initiation using RNA-Seq and integrated bioinformatics analysisCited by: 12
Author(s): Basharat Ahmad Bhat, Mıfftha Yaseen, Ashutosh Singh, Syed Mudasir Ahmad, Nazir Ahmad Ganai
Software Mentions: 2
Published: almost 6 years ago
10.1186/s13058-015-0666-0
ELF5 isoform expression is tissue-specific and significantly altered in cancerCited by: 33
Author(s): Catherine Piggin, Daniel Roden, David Gallego‐Ortega, Heather Lee, Samantha Oakes, Christopher J. Ormandy
Software Mentions: 2
Published: almost 11 years ago
10.1038/s41598-020-79769-y
Integrative multiomics analysis of Premolis semirufa caterpillar venom in the search for molecules leading to a joint diseaseCited by: 2
Author(s): Giselle Pidde, Milton Yutaka Nishiyama, Úrsula Castro de Oliveira, Isadora Maria Villas-Boas, Adriana F. Paes‐Leme, Inácio L.M. Junqueira-de-Azevedo, Rafael Marques-Porto, Carla Cristina Squaiella-Baptistão, Denise V. Tambourgi
Software Mentions: 2
Published: almost 6 years ago
10.1038/s41598-020-80830-z
Transcriptomic responses of Microcystis aeruginosa under electromagnetic radiation exposureCited by: 6
Author(s): Chao Tang, Ziyan Zhang, Shen Tian, Peng Cai
Software Mentions: 2
Published: almost 6 years ago
10.3390/brainsci9120340
Evaluation of Microglia/Macrophage Cells from Rat Striatum and Prefrontal Cortex Reveals Differential Expression of Inflammatory-Related mRNA after MethamphetamineCited by: 9
Author(s): Joanne Kays, Bryan K. Yamamoto
Software Mentions: 2
Published: almost 7 years ago
10.1038/s41598-020-79020-8
Comparative transcriptome analysis of Rheum australe, an endangered medicinal herb, growing in its natural habitat and those grown in controlled growth chambersCited by: 11
Author(s): Deep Mala, Supriya Awasthi, Nitesh Kumar Sharma, Mohit Kumar Swarnkar, Ravi Shankar, Sanjay Kumar
Software Mentions: 2
Published: over 5 years ago
10.1038/s41598-021-83345-3
Altered non-coding RNA expression profile in F1 progeny 1 year after parental irradiation is linked to adverse effects in zebrafishCited by: 4
Author(s): Leonardo Martín, Jorke H. Kamstra, Selma Hurem, Leif C. Lindeman, Dag Anders Brede, Håvard Aanes, Igor Babiak, Amílcar Arenal, Deborah Oughton, Brit Salbu, Jan Ludvig Lyche, Peter Alestrøm
Software Mentions: 2
Published: over 5 years ago
10.1186/s12967-020-02509-3
LTBP1 plays a potential bridge between depressive disorder and glioblastomaCited by: 7
Author(s): Xiaojun Fu, Pei Zhang, Hongwang Song, Chenxing Wu, Shengzhen Li, Shouwei Li, Yan Chen
Software Mentions: 2
Published: about 6 years ago
10.1186/s12870-017-1055-x
Integrative analysis of DNA methylation, mRNAs, and small RNAs during maize embryo dedifferentiationCited by: 14
Author(s): Hongjun Liu, Langlang Ma, Xuerong Yang, Lin Zhang, Xing Zeng, Shupeng Xie, Huanwei Peng, Shibin Gao, Hung-Ching Lin, Guangtang Pan, Yongrui Wu, Yaou Shen
Software Mentions: 2
Published: over 9 years ago
10.1038/s41598-021-83872-z
Defining early changes in Alzheimer’s disease from RNA sequencing of brain regions differentially affected by pathologyCited by: 21
Author(s): Boris Guennewig, Julia Lim, Lee Marshall, Andrew N. McCorkindale, Patrick Jarmo Paasila, Ellis Patrick, Jillian J. Kril, Glenda M. Halliday, Antony A. Cooper, Greg T. Sutherland
Software Mentions: 2
Published: over 5 years ago
10.1038/s41598-020-72892-w
Differential expression analysis and profiling of hepatic miRNA and isomiRNA in dengue hemorrhagic feverCited by: 10
Author(s): Layanna Freitas de Oliveira, Amanda Araújo Serrão de Andrade, Carla Pagliari, Leda Viegas de Carvalho, Taiana S Silveira, Jedson Ferreira Cardoso, André Luíz Teles e Silva, Janaína Mota de Vasconcelos, Caroline Aquino Moreira-Nunes, Rommel Rodrı́guez Burbano, Márcio Roberto Teixeira Nunes, Eduardo José Melo dos Santos, João Lídio da Silva Gonçalves Vianez Júnior
Software Mentions: 2
Published: over 5 years ago
10.1093/hmg/ddx031
Rdh10 loss-of-function and perturbed retinoid signaling underlies the etiology of choanal atresiaCited by: 25
Author(s): Hiroshi Kurosaka, Qi Wang, Lisa L. Sandell, Takashi Yamashiro, Paul A. Trainor
Software Mentions: 2
Published: over 9 years ago
10.1038/ismej.2016.42
Consortia of low-abundance bacteria drive sulfate reduction-dependent degradation of fermentation products in peat soil microcosmsCited by: 121
Author(s): Bela Hausmann, Klaus‐Holger Knorr, Katharina Schreck, Susannah G. Tringe, Tijana Glavina del Rio, Alexander Loy, Michael Pester
Software Mentions: 2
Published: over 10 years ago
10.1186/s12870-021-02921-x
Dynamic transcriptome analysis identifies genes related to fatty acid biosynthesis in the seeds of Prunus pedunculata PallCited by: 1
Author(s): Wenquan Bao, Dun Ao, Lin Wang, Zhihao Ling, Maoshan Chen, Yue Bai, Tana Wuyun, Junxing Chen, Shuning Zhang, Fengming Li
Software Mentions: 2
Published: over 5 years ago
10.1038/s41396-019-0580-z
Phage-specific metabolic reprogramming of virocellsCited by: 118
Author(s): Cristina Howard-Varona, Morgan Lindback, G. Eric Bastien, Natalie Solonenko, Ahmed A. Zayed, Ho Bin Jang, Bill Andreopoulos, Heather M. Brewer, Tijana Glavina del Rio, Joshua N. Adkins, Subhadeep Paul, Matthew B. Sullivan, Melissa B. Duhaime
Software Mentions: 2
Published: almost 7 years ago
10.3390/jpm8030029
Individualized Transcriptional Resolution of Complicated Malaria in a Colombian StudyCited by: 2
Author(s): Mónica L. Rojas-Peña, Meixue Duan, Dalia Arafat, Lina M. Rengifo, Sócrates Herrera, Myriam Arévalo‐Herrera, Greg Gibson
Software Mentions: 2
Published: about 8 years ago
10.1186/s13046-018-0873-5
Integrated genomic analyses in PDX model reveal a cyclin-dependent kinase inhibitor Palbociclib as a novel candidate drug for nasopharyngeal carcinomaCited by: 20
Author(s): Cheng Lung Hsu, Kar Wai Lui, Ming Liu, Yung Chia Kuo, Yin‐Kai Chao, Chun‐Nan Yeh, Li Yu Lee, Yen‐Lin Huang, Tsan-Shiun Lin, Mei Yuan Huang, Yi Ru Lai, Yuan Ming Yeh, Hsien Chi Fan, An Chi Lin, Yen Jung Lu, Chia Hsun Hsieh, Kai Ping Chang, Ngan Ming Tsang, Hung Ming Wang, Alex Y. Chang, Yu Sun Chang, Hsin Pai Li
Software Mentions: 2
Published: about 8 years ago
10.1186/s13046-020-01624-9
Long non-coding RNA CASC9 promotes tumor growth and metastasis via modulating FZD6/Wnt/β-catenin signaling pathway in bladder cancerCited by: 29
Author(s): Yonghao Zhan, Lianghao Zhang, Shuanbao Yu, Jianguo Wen, Yuchen Liu, Xuepei Zhang
Software Mentions: 2
Published: over 6 years ago
10.1186/s13046-020-01807-4
Cell surface GRP78 regulates BACE2 via lysosome-dependent manner to maintain mesenchymal phenotype of glioma stem cellsCited by: 16
Author(s): Zihang Chen, Huizhi Wang, Zongpu Zhang, Jianye Xu, Yanhua Qi, Hao Xue, Zijie Gao, Rongrong Zhao, Shaobo Wang, Shouji Zhang, Wei Qiu, Xing Guo, Gang Li
Software Mentions: 2
Published: almost 6 years ago
10.1084/jem.20161418
Niche-mediated depletion of the normal hematopoietic stem cell reservoir by Flt3-ITD–induced myeloproliferationCited by: 39
Author(s): Adam J. Mead, Wen Hao Neo, Nikolaos Barkas, Satoshi Matsuoka, Alice Giustacchini, R Facchini, Supat Thongjuea, Lauren E. Jamieson, Christopher A.G. Booth, Nicholas Fordham, Cristina Di Genua, Deborah Atkinson, Onima Chowdhury, Emmanouela Repapi, Nicola E. Gray, Shabnam Kharazi, Clark S-A., Tiphaine Bouriez, Petter Woll, Toshio Suda, Claus Nerlov, Sten Eirik W. Jacobsen
Software Mentions: 2
Published: over 9 years ago
10.1084/jem.20181762
Immune homeostasis and regulation of the interferon pathway require myeloid-derived Regnase-3Cited by: 23
Author(s): Matthias von Gamm, Annalisa Schaub, Alisha N Jones, Christine Wolf, Gesine Behrens, Johannes Lichti, Katharina Essig, Anna Macht, Joachim Pircher, Andreas Ehrlich, Kathrin Davari, Dhruv Chauhan, Benjamin Busch, Wolfgang Wurst, Regina Feederle, Annette Feuchtinger, Matthias H. Tschöp, Caroline C. Friedel, Stefanie M. Hauck, Michael Sattler, Arie Geerlof, Veit Hornung, Vigo Heissmeyer, Christian Schulz, Mathias Heikenwälder, Elke Glasmacher
Software Mentions: 2
Published: over 7 years ago
10.1084/jem.20190493
Regulatory roles of IL-10–producing human follicular T cellsCited by: 60
Author(s): Pablo F. Cañete, Rebecca A. Sweet, Paula González-Figueroa, Ilenia Papa, Naganari Ohkura, Holly A. Bolton, Jonathan A. Roco, Marta Cuenca, Katharine Bassett, İsmail Sayin, Emma F. Barry, Angel F. Lopez, David H. Canaday, Michael Meyer‐Hermann, Claudio Doglioni, Barbara Fazekas de St Groth, Shimon Sakaguchi, Matthew C. Cook, Carola G. Vinuesa
Software Mentions: 2
Published: over 7 years ago
10.1084/jem.20170807
In vivo single cell analysis reveals Gata2 dynamics in cells transitioning to hematopoietic fateCited by: 31
Author(s): Christina Eich, Jochen Arlt, Chris S. Vink, Parham Solaimani Kartalaei, Polynikis Kaimakis, Samanta A. Mariani, Reinier van der Linden, Wiggert A. van Cappellen, Elaine Dzierzak
Software Mentions: 2
Published: almost 9 years ago
10.1186/1471-2229-14-46
A systems-wide comparison of red rice (Oryza longistaminata) tissues identifies rhizome specific genes and proteins that are targets for cultivated rice improvementCited by: 35
Author(s): Rong He, Fernanda Salvato, Park Jeong-Jin, Minjeong Kim, William M. Nelson, Tiago Santana Balbuena, Mark R. Willer, John A. Crow, Greg May, Carol Soderlund, Jay J. Thelen, David R. Gang
Software Mentions: 2
Published: over 12 years ago
10.1186/s12870-020-02487-0
Cold priming uncouples light- and cold-regulation of gene expression in Arabidopsis thalianaCited by: 13
Author(s): Andras Bittner, Jörn van Buer, Margarete Baier
Software Mentions: 2
Published: over 6 years ago
10.1186/s12870-020-02643-6
Interaction of zinc and IAA alleviate aluminum-induced damage on photosystems via promoting proton motive force and reducing proton gradient in alfalfaCited by: 10
Author(s): Liantai Su, Jianming Xie, Wuwu Wen, Jiaojiao Li, Peng Zhou, Yuan An
Software Mentions: 2
Published: about 6 years ago
10.1186/s12870-019-2081-7
Anatomy and RNA-Seq reveal important gene pathways regulating sex differentiation in a functionally Androdioecious tree, Tapiscia sinensisCited by: 7
Author(s): Guiliang Xin, Jia-Qian Liu, Jia Liu, Xiaolong Ren, Xiaomin Du, Wenzhe Liu
Software Mentions: 2
Published: almost 7 years ago
10.1186/s12870-019-1935-3
Rpv3–1 mediated resistance to grapevine downy mildew is associated with specific host transcriptional responses and the accumulation of stilbenesCited by: 35
Author(s): Birgit Eisenmann, Stefan Czemmel, Tobias Ziegler, Günther Buchholz, A. Kortekamp, Oliver Trapp, Thomas Rausch, Ian B. Dry, Jochen Bogs
Software Mentions: 2
Published: about 7 years ago
10.1186/s12920-019-0550-3
Transcriptome profiling reveals significant changes in the gastric muscularis externa with obesity that partially overlap those that occur with idiopathic gastroparesisCited by: 10
Author(s): B. Paul Herring, Meng Chen, Plamen Mihaylov, April M. Hoggatt, Anita Gupta, Attila Nakeeb, Jennifer Choi, John M. Wo
Software Mentions: 2
Published: over 7 years ago
10.1002/ijc.32643
Multiscale network analysis reveals molecular mechanisms and key regulators of the tumor microenvironment in gastric cancerCited by: 14
Author(s): Won‐Min Song, Xiandong Lin, Xuehong Liao, Dan Hu, Jianhua Lin, Umut Sarpel, Yunbin Ye, Yael Feferman, Daniel M. Labow, Martin J. Walsh, Xiongwei Zheng, Bin Zhang
Software Mentions: 2
Published: about 7 years ago
10.1113/JP280652
The mechanisms of skeletal muscle atrophy in response to transient knockdown of the vitamin D receptor <i>in vivo</i>Cited by: 30
Author(s): Joseph J. Bass, Abid A. Kazi, Colleen S. Deane, Asif Nakhuda, Stephen P. Ashcroft, Matthew S. Brook, Daniel J. Wilkinson, Bethan E. Phillips, Andrew Philp, Janelle Tarum, Fawzi Kadi, Ditte Andersen, Amadeo Muñoz García, Kyle Smith, Iain J. Gallagher, Nathaniel J. Szewczyk, Mark E. Cleasby, Philip J. Atherton
Software Mentions: 2
Published: almost 6 years ago
10.1186/s12870-019-2073-7
Transcriptome analysis identifies genes related to the waxy coating on blueberry fruit in two northern-adapted rabbiteye breeding populationsCited by: 18
Author(s): Xiaofeng Qi, Elizabeth L. Ogden, José V. Die, Mark K. Ehlenfeldt, James J. Polashock, Omar Darwish, Nadim W. Alkharouf, Lisa J. Rowland
Software Mentions: 2
Published: about 7 years ago
10.1186/s12920-018-0370-x
Blood pressure signature genes and blood pressure response to thiazide diuretics: results from the PEAR and PEAR-2 studiesCited by: 6
Author(s): Ana Caroline Costa Sá, Amy Webb, Yan Gong, Caitrin W. McDonough, Mohamed H. Shahin, Somnath Datta, Taimour Langaee, Stephen T. Turner, Amber L. Beitelshees, Arlene B. Chapman, Eric Boerwinkle, John G. Gums, Steven E. Scherer, Rhonda M. Cooper‐DeHoff, Wolfgang Sadée, Julie A. Johnson
Software Mentions: 2
Published: over 8 years ago
10.1186/s12920-019-0498-3
Transcriptomic analysis of fetal membranes reveals pathways involved in preterm birthCited by: 18
Author(s): Silvana Pereyra, Claudio Sosa, Bernardo Bertoni, Rossana Sapiro
Software Mentions: 2
Published: over 7 years ago
10.1155/2015/528395
Transcriptomes That Confer to Plant Defense against Powdery Mildew Disease in<i>Lagerstroemia indica</i>Cited by: 7
Author(s): Xinwang Wang, Weibing Shi, Timothy A. Rinehart
Software Mentions: 2
Published: almost 12 years ago
10.1155/2015/265791
Analysis of the<i>Thinopyrum elongatum</i>Transcriptome under Water Deficit StressCited by: 7
Author(s): Yongjun Shu, Jun Zhang, You Ao, Lili Song, Changhong Guo
Software Mentions: 2
Published: almost 12 years ago
10.1155/2019/7859121
Gene Expression Pattern and Regulatory Network of α-Toxin Treatment in Bombyx moriCited by: 0
Author(s): Tieshan Feng, Ping Lin, Jiao Gong, Chen Dong, Xi Yang, Quan Zhang, Tingcai Cheng
Software Mentions: 2
Published: over 7 years ago
10.1155/2016/2895303
Differential Gene Expression during Larval Metamorphic Development in the Pearl Oyster,<i>Pinctada fucata</i>, Based on Transcriptome AnalysisCited by: 8
Author(s): Haimei Li, Bo Zhang, Guiju Huang, Bao-Suo Liu, Sigang Fan, Dongling Zhang, Dahui Yu
Software Mentions: 2
Published: almost 11 years ago
10.1155/2018/8084032
Transcriptomic Profiling of Fruit Development in Black Raspberry <i>Rubus coreanus</i>Cited by: 5
Author(s): Qing Chen, Xunju Liu, Yun Hu, Bo Sun, Yaodong Hu, Xiaorong Wang, Haoru Tang, Yan Wang
Software Mentions: 2
Published: almost 9 years ago
10.1155/2018/5848046
The Challenges and Opportunities in the Clinical Application of Noncoding RNAs: The Road Map for miRNAs and piRNAs in Cancer Diagnostics and PrognosticsCited by: 30
Author(s): Preethi Krishnan, Sambasivarao Damaraju
Software Mentions: 2
Published: almost 9 years ago
10.1186/s12967-021-03056-1
UBE2T promotes autophagy via the p53/AMPK/mTOR signaling pathway in lung adenocarcinomaCited by: 26
Author(s): Jinhong Zhu, Haijiao Ao, Mingdong Liu, Kui Cao, Jianqun Ma
Software Mentions: 2
Published: about 5 years ago
10.1155/2015/527054
Genome-Wide Identification of Genes Probably Relevant to the Uniqueness of Tea Plant (Camellia sinensis) and Its CultivarsCited by: 2
Author(s): Yan Wei, Jing Wang, Youxiang Zhou, Mingming Zhao, Yan Gong, Hua Ding, Lijun Peng, HU Ding-jin
Software Mentions: 2
Published: almost 12 years ago
10.3390/cancers11081179
Papillary Thyroid Carcinoma Variants are Characterized by Co-dysregulation of Immune and Cancer Associated GenesCited by: 14
Author(s): Jaideep Chakladar, Wei Tse Li, Michael Bouvet, Eric Y. Chang, Jessica Wang‐Rodriguez, Weg M. Ongkeko
Software Mentions: 2
Published: about 7 years ago
10.3390/cancers13061433
Epigenetic Mechanisms Are Involved in the Oncogenic Properties of ZNF518B in Colorectal CancerCited by: 3
Author(s): Francisco Gimeno-Valiente, Ángela L. Riffo‐Campos, Luís Torres, Noelia Tarazona, Gerardo López-Rodas, Luís Franco, Josefa Castillo
Software Mentions: 2
Published: over 5 years ago
10.3390/cancers12113169
Id1 and PD-1 Combined Blockade Impairs Tumor Growth and Survival of KRAS-mutant Lung Cancer by Stimulating PD-L1 Expression and Tumor Infiltrating CD8+ T CellsCited by: 8
Author(s): Iosune Baraibar, Marta Cimavilla Román, María Rodríguez‐Remírez, Inés López, Anna Vilalta, Elizabeth Guruceaga, Margarita Ecay, María Collantes, Teresa Lozano, Diego Alignani, A. Puyalto, Carolina Oliver, Sergio Ortiz‐Espinosa, Haritz Moreno, María Dolores Torregrosa, Christian Rolfo, Christian Caglevic, David García-Ros, María Villalba-Esparza, Carlos de Andrea, Silvestre Vicent, Rubén Pı́o, Juan José Lasarte, Alfonso Calvo, Daniel Ajona, Ignacio Gil‐Bazo
Software Mentions: 2
Published: about 6 years ago
10.3390/cancers11050673
SIRT2 Contributes to the Resistance of Melanoma Cells to the Multikinase Inhibitor DasatinibCited by: 19
Author(s): Iwona Karwaciak, Anna Sałkowska, Kaja Karaś, Marta Sobalska‐Kwapis, Aurelia Walczak‐Drzewiecka, Łukasz Pułaski, Dominik Strapagiel, Jarosław Dastych, Marcin Ratajewski
Software Mentions: 2
Published: over 7 years ago
10.3390/cancers13050957
Bifidobacterium Strain-Specific Enhances the Efficacy of Cancer Therapeutics in Tumor-Bearing MiceCited by: 23
Author(s): Young‐In Yoon, Gihyeon Kim, Bu‐Nam Jeon, Sungsoon Fang, Hansoo Park
Software Mentions: 2
Published: over 5 years ago
10.1016/j.cell.2017.11.042
Microbiome Influences Prenatal and Adult Microglia in a Sex-Specific MannerCited by: 497
Author(s): Morgane Sonia Thion, Donovan Low, Aymeric Silvin, Jinmiao Chen, Pauline Grisel, Jonas Schulte-Schrepping, Ronnie Blecher‐Gonen, Thomas Ulas, Paola Squarzoni, Guillaume Hoeffel, Fanny Coulpier, Eleni Siopi, Friederike S. David, Claus‐Jürgen Scholz, Shihui Foo, Josephine Lum, Arlaine Anne Amoyo, Anis Larbi, Michael Poidinger, Anne Buttgereit, Pierre-Marie Lledo, Melanie Greter, Jerry Kok Yen Chan, Ido Amit, Marc Beyer, Joachim L. Schultze, Andreas Schlitzer, Sven Pettersson, Florent Ginhoux, Sonia Garel
Software Mentions: 2
Published: almost 9 years ago
10.1007/s10565-020-09516-6
Estrogen receptor alpha (ERα)–mediated coregulator binding and gene expression discriminates the toxic ERα agonist diethylstilbestrol (DES) from the endogenous ERα agonist 17β-estradiol (E2)Cited by: 10
Author(s): Aziza Hussein Bakheit Adam, L.H.J. de Haan, Ignacio Miro Estruch, Guido Hooiveld, Jochem Louisse, Ivonne M.C.M. Rietjens
Software Mentions: 2
Published: over 6 years ago
10.7150/ijms.57504
Roles of the miR-139-5p/CCT5 axis in hepatocellular carcinoma: a bioinformatic analysisCited by: 7
Author(s): Jingjing Xu, Yuan Zhang, Cheng Liu, Ping Yan, Zongguo Yang
Software Mentions: 2
Published: almost 6 years ago
10.3390/cancers13092009
Distinct mRNAs in Cancer Extracellular Vesicles Activate Angiogenesis and Alter Transcriptome of Vascular Endothelial CellsCited by: 5
Author(s): Pan Zhang, Su Bin Lim, Kuan Jiang, Ti Weng Chew, Boon Chuan Low, Chwee Teck Lim
Software Mentions: 2
Published: over 5 years ago
10.3390/cancers12092674
Direct Antiviral Treatments for Hepatitis C Virus Have Off-Target Effects of Oncologic Relevance in Hepatocellular CarcinomaCited by: 11
Author(s): Catia Giovannini, Francesca Fornari, Valentina Indio, Davide Treré, Matteo Renzulli, Francesco Vasuri, Matteo Cescon, Matteo Ravaioli, Alessia Perrucci, Annalisa Astolfi, Fabio Piscaglia, Laura Gramantieri
Software Mentions: 2
Published: about 6 years ago
10.1186/s12870-020-02709-5
Heterologous expression of heat stress-responsive AtPLC9 confers heat tolerance in transgenic riceCited by: 14
Author(s): Yuliang Liu, Xinye Liu, Xue Wang, Guolian Kang, Weiwei Qi, Hua-Liang Ren, Haorui Hu, Dan Sun, Jiaoteng Bai, Shuzhi Zheng
Software Mentions: 2
Published: almost 6 years ago
10.1038/s41418-020-0541-0
Targeting triple-negative breast cancers with the Smac-mimetic birinapantCited by: 27
Author(s): Najoua Lalaoui, Delphine Mérino, Göknur Giner, François Vaillant, Diep Chau, Lin Liu, Tobias Kratina, Bhupinder Pal, James R. Whittle, Nima Etemadi, Jean Berthelet, Julius Gräsel, Cathrine Hall, Matthew E. Ritchie, Matthias Ernst, Gordon K. Smyth, David Vaux, Jane E. Visvader, Geoffrey J. Lindeman, John Silke
Software Mentions: 2
Published: over 6 years ago
10.1038/s41418-020-00653-3
HDAC inhibition ameliorates cone survival in retinitis pigmentosa miceCited by: 21
Author(s): Marijana Samardzija, Andrea Corna, Raquel Gómez‐Sintes, Mohamed Ali Jarboui, Angela Armento, Jérôme E. Roger, Eleni Petridou, Wadood Haq, François Paquet-Durand, Eberhart Zrenner, Pedro de la Villa, Günther Zeck, Christian Grimm, Patricia Boya, Marius Ueffing, Dragana Trifunović
Software Mentions: 2
Published: almost 6 years ago
10.1038/s41419-020-2435-y
CCL5 derived from tumor-associated macrophages promotes prostate cancer stem cells and metastasis via activating β-catenin/STAT3 signalingCited by: 131
Author(s): Renlun Huang, Shengqi Wang, Neng Wang, Yifeng Zheng, Jianfu Zhou, Bowen Yang, Xuan Wang, Juping Zhang, Lang Guo, Shusheng Wang, Zhiqiang Chen, Zhiyu Wang, Shulin Xiang
Software Mentions: 2
Published: over 6 years ago
10.1038/s41419-021-04005-y
ETV7 regulates breast cancer stem-like cell features by repressing IFN-response genesCited by: 11
Author(s): Laura Pezzè, Erna Marija Meškytė, Mattia Forcato, Stefano Pontalti, Kalina Aleksandra Badowska, Dario Rizzotto, Ira Skvortsova, Silvio Bicciato, Yari Ciribilli
Software Mentions: 2
Published: over 5 years ago
10.3390/cancers10110403
Simultaneous Inhibition of MEK and Hh Signaling Reduces Pancreatic Cancer MetastasisCited by: 13
Author(s): Dongsheng Gu, Hai Lin, Xiaoli Zhang, Qipeng Fan, Shaoxiong Chen, Safi Shahda, Yunlong Liu, Jie Sun, Jingwu Xie
Software Mentions: 2
Published: about 8 years ago
10.3390/cancers13092012
Inhibition of the Myocardin-Related Transcription Factor Pathway Increases Efficacy of Trametinib in NRAS-Mutant Melanoma Cell LinesCited by: 5
Author(s): Kathryn M. Appleton, Charuta C. Palsuledesai, Sean A. Misek, Maja K. Blake, Joseph Zagorski, Kathleen A. Gallo, Thomas S. Dexheimer, Richard R. Neubig
Software Mentions: 2
Published: over 5 years ago
10.1038/s41419-021-04076-x
Toll-like receptor 4 is a master regulator for colorectal cancer growth under high-fat diet by programming cancer metabolismCited by: 6
Author(s): Xianjing Hu, Sarwat Fatima, Minting Chen, Keyang Xu, Chunhua Huang, Rui Gong, Tao Su, Hoi Leong Xavier Wong, Zhaoxiang Bian, Hiu Yee Kwan
Software Mentions: 2
Published: about 5 years ago
10.1038/s41419-019-1938-x
TNFR2 induced priming of the inflammasome leads to a RIPK1-dependent cell death in the absence of XIAPCited by: 22
Author(s): Janin Knop, Lisanne M. Spilgies, Stefanie Rufli, Ramona Reinhart, Lazaros Vasilikos, Monica Yabal, Erika Owsley, Philipp J. Jost, Rebecca Marsh, Harald Wajant, Mark D. Robinson, Thomas Kaufmann, Wendy Wei-Lynn Wong
Software Mentions: 2
Published: about 7 years ago
10.1038/s41366-020-0561-3
Impact of maternal obesity on placental transcriptome and morphology associated with fetal growth restriction in miceCited by: 19
Author(s): Daniela de Barros Mucci, Laura C. Kusinski, Phoebe Wilsmore, Elena Loche, Lucas Carminatti Pantaleão, Tom Ashmore, Heather L. Blackmore, Denise S. Fernandez‐Twinn, Maria das Graças Tavares do Carmo, Susan E. Ozanne
Software Mentions: 2
Published: over 6 years ago
10.3390/cancers12020353
Plasma Next Generation Sequencing and Droplet Digital-qPCR-Based Quantification of Circulating Cell-Free RNA for Noninvasive Early Detection of CancerCited by: 22
Author(s): Martin Metzenmacher, Renáta Váraljai, Balázs Hegedűs, Igor Cima, Jan Förster, Alexander Schramm, Björn Scheffler, Peter A. Horn, Christoph A. Klein, Tibor Szarvas, Henning Reis, Nicola Bielefeld, Alexander Roesch, Clemens Aigner, Volker Kunzmann, Marcel Wiesweg, Jens T. Siveke, Martin Schüler, Smiths Lueong
Software Mentions: 2
Published: over 6 years ago
10.1038/s41419-019-1696-9
FGF1ΔHBS ameliorates chronic kidney disease via PI3K/AKT mediated suppression of oxidative stress and inflammationCited by: 48
Author(s): Dezhong Wang, Mengyun Jin, Xinyu Zhao, Tianyang Zhao, Wei Lin, Zhengle He, Miaojuan Fan, Wei Jin, Jie Zhou, Lingwei Jin, Chao Zheng, Hui Jin, Yushuo Zhao, Xiaokun Li, Ying Lei, Yang Wang, Guo‐Qing Zhu, Zhifeng Huang
Software Mentions: 2
Published: over 7 years ago
10.1038/s41419-020-2589-7
BCL-xL/BCL2L1 is a critical anti-apoptotic protein that promotes the survival of differentiating pancreatic cells from human pluripotent stem cellsCited by: 19
Author(s): Larry Sai Weng Loo, Andreas Alvin Purnomo Soetedjo, Hwee Hui Lau, Natasha Hui Jin Ng, Soumita Ghosh, Linh Nguyen, Vidhya G. Krishnan, Hyungwon Choi, Xavier Roca, Shawn Hoon, Adrian Kee Keong Teo
Software Mentions: 2
Published: over 6 years ago
10.1186/s13045-021-01045-x
The construction, expression, and enhanced anti-tumor activity of YM101: a bispecific antibody simultaneously targeting TGF-β and PD-L1Cited by: 90
Author(s): Ming Yi, Jing Zhang, An‐Ping Li, Mengke Niu, Yongxiang Yan, Yanmei Jiao, Suxia Luo, Pengfei Zhou, Kongming Wu
Software Mentions: 2
Published: over 5 years ago
10.1038/s41419-020-2704-9
Reduced replication origin licensing selectively kills KRAS-mutant colorectal cancer cells via mitotic catastropheCited by: 4
Author(s): Bastian Gastl, Kathleen Klotz-Noack, Bertram Klinger, Sylvia Ispasanie, Krenoula Hani Fouad Salib, Johannes Zuber, Soulafa Mamlouk, Natalie Bublitz, Nils Blüthgen, David Horst, Markus Morkel, Reinhold Schäfer, Christine Sers
Software Mentions: 2
Published: over 6 years ago
10.1038/s41419-018-1296-0
Transcriptome profiling of caspase-2 deficient EμMyc and Th-MYCN mouse tumors identifies distinct putative roles for caspase-2 in neuronal differentiation and immune signalingCited by: 4
Author(s): Loretta Dorstyn, Emily Hackett-Jones, Andrej Nikolic, Murray D. Norris, Yoon Pin Lim, John Toubia, Michelle Haber, Sharad Kumar
Software Mentions: 2
Published: almost 8 years ago
10.1038/s41419-018-0869-2
LncRNA MIR100HG promotes cell proliferation in triple-negative breast cancer through triplex formation with p27 lociCited by: 105
Author(s): Shaowei Wang, Ke Hao, Honglei Zhang, Yujie Ma, Lei Ao, Li Zou, Qin Yang, Huiping Zhu, Jianyun Nie, Chen Wu, Baowei Jiao
Software Mentions: 2
Published: over 8 years ago
10.1038/s41419-020-2372-9
Myofibroblast induces hepatocyte-to-ductal metaplasia via laminin–ɑvβ6 integrin in liver fibrosisCited by: 15
Author(s): Ting Xu, Zhijie Lu, Zhuanglong Xiao, Fang Liu, Yuhua Chen, Zhijun Wang, Shenghua Zhu, Yufang Song
Software Mentions: 2
Published: over 6 years ago
10.1038/s41420-020-00295-x
The prognostic value of six survival-related genes in bladder cancerCited by: 7
Author(s): Songbai Cheng, Jiang Zhou, Jing Xiao, Huiling Guo, Zhengrong Wang, Yuhui Wang
Software Mentions: 2
Published: over 6 years ago
10.1038/s41420-020-00392-x
Translation machinery reprogramming in programmed cell death in Saccharomyces cerevisiaeCited by: 5
Author(s): Francesco Monticolo, Emanuela Palomba, Maria Luisa Chiusano
Software Mentions: 2
Published: almost 6 years ago
10.1038/s41420-021-00560-7
Identification of a seven-long non-coding RNA signature associated with Jab1/CSN5 in predicting hepatocellular carcinomaCited by: 7
Author(s): Weijie Ma, Ye Yao, Gang Xu, Xiaoling Wu, Jinghua Liu, Ganggang Wang, Xi Chen, Kunlei Wang, Yirang Chen, Yonghua Guo, Yongsheng Li, Deli Tan, Hui Guo, Zhisu Liu, Yufeng Yuan, François X. Claret
Software Mentions: 2
Published: over 5 years ago
10.1002/embr.201337642
Extensive regulation of the non‐coding transcriptome by hypoxia: role of <scp>HIF</scp> in releasing paused <scp>RNA</scp> pol2Cited by: 138
Author(s): Hani Choudhry, Johannes Schödel, Spyros Oikonomopoulos, Carme Camps, Steffen Grampp, Adrian L. Harris, Peter J. Ratcliffe, Jiannis Ragoussis, David R. Mole
Software Mentions: 2
Published: almost 13 years ago
10.15252/embr.201847379
<scp>IL</scp> ‐7‐dependent compositional changes within the γδ T cell pool in lymph nodes during ageing lead to an unbalanced anti‐tumour responseCited by: 35
Author(s): Hung-Chang Chen, Nils Eling, Celia P. Martínez-Jiménez, L. M. O'Brien, Valentina Carbonaro, John C. Marioni, Duncan T. Odom
Software Mentions: 2
Published: over 7 years ago
10.3390/cancers12040786
A Novel Role for the Tumor Suppressor Gene ITF2 in Tumorigenesis and Chemotherapy ResponseCited by: 9
Author(s): Olga Pernía, Ana Sastre-Perona, Carlos Rodriguez-Antolín, Álvaro García-Guede, María Palomares‐Bralo, Rocío Rosas, Darío Sánchez-Cabrero, Patricia Cruz, Carmen Rodrı́guez, MDolores Diestro, Rubén Martín‐Arenas, Verónica Pulido, Pilar Santisteban, Javier de Castro, Olga Vera, Inmaculada Ibáñez de Cáceres
Software Mentions: 2
Published: over 6 years ago
10.15252/embr.201948469
Wnt regulates amino acid transporter <i>Slc7a5</i> and so constrains the integrated stress response in mouse embryosCited by: 21
Author(s): Nadège Poncet, Pamela A. Halley, Christopher Lipina, Marek Gierliński, Alwyn Dady, Gail Singer, Melanie Febrer, Yun‐Bo Shi, Terry P. Yamaguchi, Peter M. Taylor, Kate G. Storey
Software Mentions: 2
Published: almost 7 years ago
10.15252/embr.201948019
The role of <i>Xist</i> ‐mediated Polycomb recruitment in the initiation of X‐chromosome inactivationCited by: 72
Author(s): Aurélie Bousard, Ana Raposo, J. Ż̷ylicz, Christel Picard, Vanessa Borges Pires, Yanyan Qi, Cláudia Raquel Estopa Gil, Laurène Syx, Howard Y. Chang, Edith Heard, Simão Teixeira da Rocha
Software Mentions: 2
Published: about 7 years ago