10.1186/s12864-015-1929-y

Transfer RNA detection by small RNA deep sequencing and disease association with myelodysplastic syndromes
Cited by: 38
Author(s): Yan Guo, Amma Bosompem, Sanjay Mohan, Begüm Erdoğan, Fei Ye, Kasey C. Vickers, Quanhu Sheng, Shilin Zhao, Chung I. Li, Pei Fang Su, Madan Jagasia, Stephen A. Strickland, Elizabeth A. Griffiths, Annette S. Kim
Software Mentions: 2
Published: about 11 years ago

10.1186/s12864-019-5860-5

Transcriptome profiling of Puccinellia tenuiflora during seed germination under a long-term saline-alkali stress
Cited by: 29
Author(s): Xiaoxue Ye, Hao Wang, Xiuling Cao, Xuejiao Jin, Fuqiang Cui, Yuanyuan Bu, Hua Liu, Wenwu Wu, Tetsuo Takano, Shenkui Liu
Software Mentions: 2
Published: over 7 years ago

10.1186/s12864-016-3115-2

Single-cell RNA sequencing reveals dynamic changes in A-to-I RNA editome during early human embryogenesis
Cited by: 25
Author(s): Si Qiu, Wenhui Li, Heng Xiong, Dongbing Liu, Yang Bai, Kui Wu, Xiuqing Zhang, Huanming Yang, Kun Ma, Yong Hou, Bo Li
Software Mentions: 2
Published: about 10 years ago

10.1186/s12864-017-4317-y

Transcriptome analysis of ruminal epithelia revealed potential regulatory mechanisms involved in host adaptation to gradual high fermentable dietary transition in beef cattle
Cited by: 22
Author(s): Ke Zhao, Y. H. Chen, G.B. Penner, M. Oba, Le Luo Guan
Software Mentions: 2
Published: almost 9 years ago

10.1186/s12864-016-2660-z

Combined physiological, transcriptome, and cis-regulatory element analyses indicate that key aspects of ripening, metabolism, and transcriptional program in grapes (Vitis vinifera L.) are differentially modulated accordingly to fruit size
Cited by: 53
Author(s): D. Wong, Rodrigo Lopez Gutierrez, Nicolas Dimopoulos, Grégory A. Gambetta, Simone D. Castellarin
Software Mentions: 2
Published: over 10 years ago

10.1186/s12864-021-07677-0

Dynamic transcriptome and histomorphology analysis of developmental traits of hindlimb thigh muscle from Odorrana tormota and its adaptability to different life history stages
Cited by: 1
Author(s): Yilin Shu, Jun He, Huijuan Zhang, Guangxuan Liu, Shikun Li, Shuaitao Deng, Hailong Wu
Software Mentions: 2
Published: over 5 years ago

10.1186/s12916-016-0632-4

Modeling hormonal and inflammatory contributions to preterm and term labor using uterine temporal transcriptomics
Cited by: 54
Author(s): Roberta Migale, David A. MacIntyre, Stefano Cacciatore, Yun Sok Lee, Henrik Hagberg, Bronwen R. Herbert, Mark R. Johnson, Donald Peebles, Simon N. Waddington, Phillip R. Bennett
Software Mentions: 2
Published: over 10 years ago

10.1186/s12881-016-0292-4

Genome-wide DNA methylation analysis of transient neonatal diabetes type 1 patients with mutations in ZFP57
Cited by: 25
Author(s): Mads Bak, Susanne E. Boonen, Christina Dahl, Johanne M D Hahnemann, Deborah J G Mackay, Zeynep Tümer, Karen Grønskov, I. Karen Temple, Per Guldberg, Niels Tommerup
Software Mentions: 2
Published: over 10 years ago

10.1186/s12920-020-00825-7

RNA sequencing analysis reveals increased expression of interferon signaling genes and dysregulation of bone metabolism affecting pathways in the whole blood of patients with osteogenesis imperfecta
Cited by: 4
Author(s): Lidiia Zhytnik, Katre Maasalu, Ene Reimann, Aare Märtson, Sulev Kõks
Software Mentions: 2
Published: almost 6 years ago

10.1186/s12920-018-0376-4

Longitudinal expression profiling of CD4+ and CD8+ cells in patients with active to quiescent giant cell arteritis
Cited by: 13
Author(s): Elisabeth De Smit, Samuel W. Lukowski, Lisa K. Anderson, Anne Senabouth, Kaisar Dauyey, Sharon Song, Bruce D. Wyse, Lawrie Wheeler, Christine Y. Chen, Kun Cao, Amy Yuen, Neil Shuey, Linda Clarke, M Isabel G Lopez Sanchez, Stevephen Hung, Alice Pébay, David A. Mackey, Matthew A. Brown, Alex W. Hewitt, Joseph E. Powell
Software Mentions: 2
Published: over 8 years ago

10.1186/s12920-018-0463-6

Selecting precise reference normal tissue samples for cancer research using a deep learning approach
Cited by: 33
Author(s): William Z. D. Zeng, Benjamin S. Glicksberg, Yangyan Li, Bin Chen
Software Mentions: 2
Published: almost 8 years ago

10.1186/s12920-018-0379-1

Transcriptomic signatures reveal immune dysregulation in human diabetic and idiopathic gastroparesis
Cited by: 37
Author(s): Madhusudan Grover, Simon J. Gibbons, Asha Nair, Cheryl E. Bernard, Adeel S. Zubair, Seth T. Eisenman, Laura Wilson, Laura Miriel, Pankaj J. Pasricha, Henry P. Parkman, Irene Sarosiek, Richard W. McCallum, Kenneth L. Koch, Thomas L. Abell, William J. Snape, Braden Kuo, Robert J. Shulman, Travis J. McKenzie, Todd A. Kellogg, Michael L. Kendrick, James Tonascia, Frank A. Hamilton, Gianrico Farrugia
Software Mentions: 2
Published: about 8 years ago

10.1186/s12920-019-0498-3

Transcriptomic analysis of fetal membranes reveals pathways involved in preterm birth
Cited by: 18
Author(s): Silvana Pereyra, Claudio Sosa, Bernardo Bertoni, Rossana Sapiro
Software Mentions: 2
Published: over 7 years ago

10.1186/s12920-018-0370-x

Blood pressure signature genes and blood pressure response to thiazide diuretics: results from the PEAR and PEAR-2 studies
Cited by: 6
Author(s): Ana Caroline Costa Sá, Amy Webb, Yan Gong, Caitrin W. McDonough, Mohamed H. Shahin, Somnath Datta, Taimour Langaee, Stephen T. Turner, Amber L. Beitelshees, Arlene B. Chapman, Eric Boerwinkle, John G. Gums, Steven E. Scherer, Rhonda M. Cooper‐DeHoff, Wolfgang Sadée, Julie A. Johnson
Software Mentions: 2
Published: over 8 years ago

10.1186/s12920-019-0550-3

Transcriptome profiling reveals significant changes in the gastric muscularis externa with obesity that partially overlap those that occur with idiopathic gastroparesis
Cited by: 10
Author(s): B. Paul Herring, Meng Chen, Plamen Mihaylov, April M. Hoggatt, Anita Gupta, Attila Nakeeb, Jennifer Choi, John M. Wo
Software Mentions: 2
Published: over 7 years ago

10.1186/s12866-020-02039-4

Transcriptional response of Bacillus megaterium FDU301 to PEG200-mediated arid stress
Cited by: 7
Author(s): Lei Zhao, Yanjun Zhou, Jianbei Li, Yucheng Xia, Weiyun Wang, Xiuqi Luo, Juan Yin, Jun Zhong
Software Mentions: 2
Published: almost 6 years ago

10.1186/s12866-020-01853-0

Comparative transcriptome analysis of two Cercospora sojina strains reveals differences in virulence under nitrogen starvation stress
Cited by: 2
Author(s): Xiaorong Gu, Shuai Yang, Xiaoxue Yang, Liangliang Yao, Xuedong Gao, Maoming Zhang, Wei Liu, Haiming Zhao, Qingsheng Wang, Zengjie Li, Zhimin Li, Junjie Ding
Software Mentions: 2
Published: over 6 years ago

10.1186/s12866-015-0513-6

Deep sequencing analysis of transcriptomes in Aspergillus flavus in response to resveratrol
Cited by: 40
Author(s): Houmiao Wang, Yong Lei, Liying Yan, Ke Cheng, Xiaofeng Dai, Ling‐Shu Wan, Wanshou Guo, Cheng Ling, Boshou Liao
Software Mentions: 2
Published: about 11 years ago

10.1186/s12866-018-1158-z

Transcriptome analysis of different growth stages of Aspergillus oryzae reveals dynamic changes of distinct classes of genes during growth
Cited by: 21
Author(s): Bin He, Zhìhóng Hú, Ling Ma, Haoran Li, Mingqiang Ai, Jizhong Han
Software Mentions: 2
Published: over 8 years ago

10.1186/s12866-016-0761-0

Genomic characterization of plant cell wall degrading enzymes and in silico analysis of xylanses and polygalacturonases of Fusarium virguliforme
Cited by: 44
Author(s): Hao‐Xun Chang, Craig R. Yendrek, Gustavo Caetano‐Anollés, G. L. Hartman
Software Mentions: 2
Published: over 10 years ago

10.1186/s12866-018-1289-2

Symbiotic microbes affect the expression of male reproductive genes in Glossina m. morsitans
Cited by: 8
Author(s): Francesca Scolari, Geoffrey M. Attardo, Emre Aksoy, Brian L. Weiss, Grazia Savini, Peter Takáč, Adly M. M. Abd-Alla, Andrew G. Parker, Serap Aksoy, Anna R. Malacrida
Software Mentions: 2
Published: about 8 years ago

10.1186/s12870-019-1933-5

De novo transcriptome sequencing and gene expression profiling of Magnolia wufengensis in response to cold stress
Cited by: 38
Author(s): Shixin Deng, Jun Ma, Lili Zhang, Faju Chen, Ziyang Sang, Zhongkui Jia, Ma Li
Software Mentions: 2
Published: over 7 years ago

10.1186/s12870-015-0521-6

A comparison of the low temperature transcriptomes of two tomato genotypes that differ in freezing tolerance: Solanum lycopersicum and Solanum habrochaites
Cited by: 74
Author(s): Hongyu Chen, Xiuling Chen, Dong Chen, Jin-Fu Li, Yi Zhang, Aoxue Wang
Software Mentions: 2
Published: over 11 years ago

10.1186/s12870-016-0962-6

Genome-scale transcriptional study of hybrid effects and regulatory divergence in an F1 hybrid Ruellia (Wild Petunias: Acanthaceae) and its parents
Cited by: 12
Author(s): Yongbin Zhuang, Erin A. Tripp
Software Mentions: 2
Published: almost 10 years ago

10.1186/s12870-017-1032-4

Transcriptomic analysis links gene expression to unilateral pollen-pistil reproductive barriers
Cited by: 6
Author(s): Amanda K. Broz, Rafael F. Guerrero, April M. Randle, You Soon Baek, Matthew W. Hahn, Patricia A. Bedinger
Software Mentions: 2
Published: over 9 years ago

10.1186/s12870-014-0368-2

Regulation of Zn and Fe transporters by the GPC1gene during early wheat monocarpic senescence
Cited by: 101
Author(s): Stephen Pearce, Facundo Tabbita, Dario Cantu, Vince Buffalo, Raz Avni, Hans Vazquez-Gross, Rongrong Zhao, Christopher J. Conley, Assaf Distelfeld, Jorge Dubcovksy
Software Mentions: 2
Published: almost 12 years ago

10.1186/s12870-014-0356-6

Columnar apple primary roots share some features of the columnar-specific gene expression profile of aerial plant parts as evidenced by RNA-Seq analysis
Cited by: 17
Author(s): R. Petersen, Haris Djozgic, Benjamin Rieger, Steffen Rapp, Erwin R. Schmidt
Software Mentions: 2
Published: almost 12 years ago

10.1186/s12870-017-1192-2

Differential gene expression in response to Fusarium oxysporum infection in resistant and susceptible genotypes of flax (Linum usitatissimum L.)
Cited by: 37
Author(s): Alexey A. Dmitriev, George S. Krasnov, Tatiana A. Rozhmina, Roman O. Novakovskiy, Anastasiya V. Snezhkina, Maria S. Fedorova, Olga Yu. Yurkevich, Olga V. Muravenko, Nadezhda L. Bolsheva, Anna V. Kudryavtseva, Nataliya V. Melnikova
Software Mentions: 2
Published: almost 9 years ago

10.1186/s12870-020-02709-5

Heterologous expression of heat stress-responsive AtPLC9 confers heat tolerance in transgenic rice
Cited by: 14
Author(s): Yuliang Liu, Xinye Liu, Xue Wang, Guolian Kang, Weiwei Qi, Hua-Liang Ren, Haorui Hu, Dan Sun, Jiaoteng Bai, Shuzhi Zheng
Software Mentions: 2
Published: almost 6 years ago

10.1186/s12870-019-2073-7

Transcriptome analysis identifies genes related to the waxy coating on blueberry fruit in two northern-adapted rabbiteye breeding populations
Cited by: 18
Author(s): Xiaofeng Qi, Elizabeth L. Ogden, José V. Die, Mark K. Ehlenfeldt, James J. Polashock, Omar Darwish, Nadim W. Alkharouf, Lisa J. Rowland
Software Mentions: 2
Published: about 7 years ago

10.1186/s12870-019-1935-3

Rpv3–1 mediated resistance to grapevine downy mildew is associated with specific host transcriptional responses and the accumulation of stilbenes
Cited by: 35
Author(s): Birgit Eisenmann, Stefan Czemmel, Tobias Ziegler, Günther Buchholz, A. Kortekamp, Oliver Trapp, Thomas Rausch, Ian B. Dry, Jochen Bogs
Software Mentions: 2
Published: about 7 years ago

10.1186/s12870-019-2081-7

Anatomy and RNA-Seq reveal important gene pathways regulating sex differentiation in a functionally Androdioecious tree, Tapiscia sinensis
Cited by: 7
Author(s): Guiliang Xin, Jia-Qian Liu, Jia Liu, Xiaolong Ren, Xiaomin Du, Wenzhe Liu
Software Mentions: 2
Published: almost 7 years ago

10.1186/s12870-020-02643-6

Interaction of zinc and IAA alleviate aluminum-induced damage on photosystems via promoting proton motive force and reducing proton gradient in alfalfa
Cited by: 10
Author(s): Liantai Su, Jianming Xie, Wuwu Wen, Jiaojiao Li, Peng Zhou, Yuan An
Software Mentions: 2
Published: about 6 years ago

10.1186/s12870-020-02487-0

Cold priming uncouples light- and cold-regulation of gene expression in Arabidopsis thaliana
Cited by: 13
Author(s): Andras Bittner, Jörn van Buer, Margarete Baier
Software Mentions: 2
Published: over 6 years ago

10.1186/1471-2229-14-46

A systems-wide comparison of red rice (Oryza longistaminata) tissues identifies rhizome specific genes and proteins that are targets for cultivated rice improvement
Cited by: 35
Author(s): Rong He, Fernanda Salvato, Park Jeong-Jin, Minjeong Kim, William M. Nelson, Tiago Santana Balbuena, Mark R. Willer, John A. Crow, Greg May, Carol Soderlund, Jay J. Thelen, David R. Gang
Software Mentions: 2
Published: over 12 years ago

10.1186/s12870-021-02921-x

Dynamic transcriptome analysis identifies genes related to fatty acid biosynthesis in the seeds of Prunus pedunculata Pall
Cited by: 1
Author(s): Wenquan Bao, Dun Ao, Lin Wang, Zhihao Ling, Maoshan Chen, Yue Bai, Tana Wuyun, Junxing Chen, Shuning Zhang, Fengming Li
Software Mentions: 2
Published: over 5 years ago

10.1186/s12870-017-1055-x

Integrative analysis of DNA methylation, mRNAs, and small RNAs during maize embryo dedifferentiation
Cited by: 14
Author(s): Hongjun Liu, Langlang Ma, Xuerong Yang, Lin Zhang, Xing Zeng, Shupeng Xie, Huanwei Peng, Shibin Gao, Hung-Ching Lin, Guangtang Pan, Yongrui Wu, Yaou Shen
Software Mentions: 2
Published: over 9 years ago

10.1155/2020/7434737

Nomogram Based on microRNA Signature Contributes to Improve Survival Prediction of Clear Cell Renal Cell Carcinoma
Cited by: 7
Author(s): Enfa Zhao, Xiaofang Bai
Software Mentions: 2
Published: over 6 years ago

10.1155/2019/8732023

Dynamic Changes of DNA Methylation and Transcriptome Expression in Porcine Ovaries during Aging
Cited by: 8
Author(s): Xiaoyu Xi, Qin Zou, Yingying Wei, Chen Yan, Xue Wang, Daojun Lv, Peilin Li, Anxiang Wen, Li Zhu, Guoqing Tang, Jideng Ma, Mingzhou Li, Xuewei Li, Yanzhi Jiang
Software Mentions: 2
Published: about 7 years ago

10.1155/2018/8518563

Profiling and Bioinformatic Analyses Indicate Differential circRNA and miRNA/isomiR Expression and Interactions
Cited by: 7
Author(s): Li Guo, Liang Zheng, Yang Zhao, Qianyun Wang
Software Mentions: 2
Published: almost 9 years ago

10.1155/2020/1836542

Development and Validation of a Seven-Gene Signature for Predicting the Prognosis of Lung Adenocarcinoma
Cited by: 5
Author(s): Yingqing Zhang, Xiaoping Zhang, Xiaodong Liu, Ming Zhang, Xixi Gao, Jialiang Li, Yufen Xu, Zhixian Fang, Wenyu Chen
Software Mentions: 2
Published: about 6 years ago

10.1155/2015/731938

Similarities in Gene Expression Profiles during<i>In Vitro</i>Aging of Primary Human Embryonic Lung and Foreskin Fibroblasts
Cited by: 33
Author(s): Shiva Marthandan, Stefan Priebe, Mario Baumgart, Marco Groth, Alessandro Cellerino, Reinhard Guthke, Peter Hemmerich, Stephan Diekmann
Software Mentions: 2
Published: almost 12 years ago

10.1155/2020/2094320

The Identification and Verification of Key Long Noncoding RNAs in Ischemic Stroke
Cited by: 7
Author(s): Houxi Xu, Jinzhi Zhang, Yuzhu Ma, Jialin Gu, Xianwen Jing, Lu Shen, Chen Xia, Wenguo Yang, Yaoyao Bian, Shunjun Fu
Software Mentions: 2
Published: almost 6 years ago

10.1155/2017/8032910

RNA Sequencing Analysis Reveals Interactions between Breast Cancer or Melanoma Cells and the Tissue Microenvironment during Brain Metastasis
Cited by: 25
Author(s): Ryo Sato, T. Nakano, Mari Hosonaga, Oltea Sampetrean, Ritsuko Harigai, Takashi Sasaki, Ikuko Koya, Hideyuki Okano, Jun Kudoh, Hideyuki Saya, Yoshimi Arima
Software Mentions: 2
Published: almost 10 years ago

10.1155/2020/4951692

Comprehensive Analysis of lncRNA-Mediated ceRNA Crosstalk and Identification of Prognostic Biomarkers in Wilms’ Tumor
Cited by: 15
Author(s): Hong Zheng, Bai-Hui Li, Chang Liu, Jia Li, Fengting Liu
Software Mentions: 2
Published: over 6 years ago

10.1155/2020/5976127

Novel miRNA Predicts Survival and Prognosis of Cholangiocarcinoma Based on RNA-seq Data and In Vitro Experiments
Cited by: 11
Author(s): Yuan Yao, Dechao Jiao, Zaoqu Liu, Jianjian Chen, Xueliang Zhou, Zhaonan Li, Jing Li, Xinwei Han
Software Mentions: 2
Published: almost 6 years ago

10.1155/2021/1978434

RNA-seq-Based Screening in Coal Dust-Treated Cells Identified PHLDB2 as a Novel Lung Cancer-Related Molecular Marker
Cited by: 1
Author(s): Deyong Ge, Yuhan Shao, Mengjie Wang, Huihui Tao, Min Mu, Xinrong Tao
Software Mentions: 2
Published: over 5 years ago

10.1155/2020/9568976

MicroRNA-148b Inhibits the Malignant Biological Behavior of Melanoma by Reducing Sirtuin 7 Expression Levels
Cited by: 2
Author(s): Rui Sun, Meiliang Guo, Xiaojing Fan, Qinqin Meng, Ding Yuan, Xin–Rong Yang, Kexiang Yan, Hui Deng
Software Mentions: 2
Published: almost 6 years ago

10.1155/2017/8682057

Identifying the Genes Responsible for Iron-Limited Condition in Riemerella anatipestifer CH-1 through RNA-Seq-Based Analysis
Cited by: 11
Author(s): Mafeng Liu, Huang Mi, Dekang Zhu, Mingshu Wang, Renyong Jia, Shun Chen, Kunfeng Sun, Qiao Yang, Ying Wu, Francis Biville, Anchun Cheng
Software Mentions: 2
Published: almost 10 years ago

10.1155/2016/1035945

Modeling Gene Regulation in Liver Hepatocellular Carcinoma with Random Forests
Cited by: 7
Author(s): Hilal Kazan
Software Mentions: 2
Published: almost 11 years ago

10.1155/2018/1235097

Upregulation of Immune Process-Associated Genes in RAW264.7 Macrophage Cells in Response to<i>Burkholderia pseudomallei</i>Infection
Cited by: 3
Author(s): Dongmei Peng, Feng Pang, Ruiyong Cao, Shu Zhu, Xinggang Yang, Xin Nie, Zhenxing Zhang, Baobao Li, Haifeng Huang, Yaying Li, Guohua Li, Lijun Du, Yafei Wang
Software Mentions: 2
Published: over 8 years ago

10.1155/2019/6581576

Identification of Potential Biomarkers in Glioblastoma through Bioinformatic Analysis and Evaluating Their Prognostic Value
Cited by: 41
Author(s): Yabo Zhou, Yang Li, Xiaoxi Zhang, Rui Chen, Xiuqiong Chen, Wilkin Tang, Mengxian Zhang
Software Mentions: 2
Published: over 7 years ago

10.3390/biomedicines9091136

Small Extracellular Vesicle Enrichment of a Retrotransposon-Derived Double-Stranded RNA: A Means to Avoid Autoinflammation?
Cited by: 2
Author(s): Marilou H. Barrios, Alexandra L. Garnham, Andrew D Foers, Lesley Cheng, Seth L. Masters, Ken C Pang
Software Mentions: 2
Published: about 5 years ago

10.3390/biomedicines9081021

Utilizing Patient-Derived Epithelial Ovarian Cancer Tumor Organoids to Predict Carboplatin Resistance
Cited by: 11
Author(s): J Górski, Zhuwei Zhang, Joseph R. McCorkle, Jodi M. DeJohn, Chi Wang, Rachel W. Miller, Holly H. Gallion, Charles S. Dietrich, Frederick R. Ueland
Software Mentions: 2
Published: about 5 years ago

10.3390/biom10050698

Exomes of Ductal Luminal Breast Cancer Patients from Southwest Colombia: Gene Mutational Profile and Related Expression Alterations
Cited by: 3
Author(s): Carolina Cortes-Urrea, Fernando Bueno-Gutiérrez, Melissa Solarte, Miguel Guevara-Burbano, Fabián Tobar-Tosse, Patricia E. Vélez-Varela, Juan Carlos Leiva, Guillermo Barreto, Jaime Velasco-Medina, Pedro Moreno, Javier De Las Rivas
Software Mentions: 2
Published: over 6 years ago

10.3390/biom11081223

Post-Transcriptional Control of Mating-Type Gene Expression during Gametogenesis in Saccharomyces cerevisiae
Cited by: 1
Author(s): Randi Yeager, G. Guy Bushkin, Emily Singer, Rui Fu, Benjamin Cooperman, Michael A. McMurray
Software Mentions: 2
Published: about 5 years ago

10.3390/biom10070974

Transcriptome Based Profiling of the Immune Cell Gene Signature in Rat Experimental Colitis and Human IBD Tissue Samples
Cited by: 3
Author(s): Éva Boros, Bence Prontvai, Zoltán Kellermayer, Péter Balogh, Silvia Patrícia, Áron Vincze, Csaba Varga, Zoltán Maróti, Balázs Balint, István Nagy
Software Mentions: 2
Published: over 6 years ago

10.3390/biom11020274

Low Expression of miR-375 and miR-190b Differentiates Grade 3 Patients with Endometrial Cancer
Cited by: 2
Author(s): Miłosz Pietrus, Michał Seweryn, Przemysław Kapusta, Paweł Wołkow, Kazimierz Pityński, Gracjan Wątor
Software Mentions: 2
Published: over 5 years ago

10.1042/BSR20200487

The transcription factor USF1 promotes glioma cell invasion and migration by activating lncRNA HAS2-AS1
Cited by: 21
Author(s): Juntong Wang, Jingshun Gu, Aiwu You, Jun Li, Yuyan Zhang, Guomin Rao, Xuehua Ge, Kun Zhang, Jianfeng Li, Xiaohui Lu, Qianchao Wang, Tzu Chen Lin, Ling Cheng, Meiying Zhu, Xiaotang Wu, Dongchun Wang
Software Mentions: 2
Published: over 6 years ago

10.1042/BSR20190996

Integrated analysis of a competing endogenous RNA network in renal cell carcinoma using bioinformatics tools
Cited by: 14
Author(s): Weidong Jiang, Zhihua Ye
Software Mentions: 2
Published: over 7 years ago

10.1042/BSR20191554

Comprehensive analysis of prognostic biomarkers in lung adenocarcinoma based on aberrant lncRNA–miRNA–mRNA networks and Cox regression models
Cited by: 14
Author(s): Yan Yao, Tingting Zhang, Ling‐Yu Qi, Ruijuan Liu, Gongxi Liu, Wei Hua Jia, Qi Song, Changgang Sun
Software Mentions: 2
Published: almost 7 years ago

10.1042/BSR20181514

Differential expression and bioinformatics analysis of circRNA in osteosarcoma
Cited by: 36
Author(s): Yizhe Xi, Mitra Fowdur, Yun Liu, Hao Wu, Miao He, Jinmin Zhao
Software Mentions: 2
Published: over 7 years ago

10.1042/BSR20203200

Identifying breast cancer subtypes associated modules and biomarkers by integrated bioinformatics analysis
Cited by: 8
Author(s): Yanwei Wang, Li Yu, Baohong Liu, Ailin Song
Software Mentions: 2
Published: almost 6 years ago

10.1042/BSR20191251

The lncRNAs RP1-261G23.7, RP11-69E11.4 and SATB2-AS1 are a novel clinical signature for predicting recurrent osteosarcoma
Cited by: 9
Author(s): Ying Tang, Jia-Yi Dong, Cheng Yuan, Peng Li, Guo Qing-shan
Software Mentions: 2
Published: almost 7 years ago

10.1042/BSR20202203

Developing a risk scoring system based on immune-related lncRNAs for patients with gastric cancer
Cited by: 5
Author(s): Yuzhi Wang, Yu Zhong, Yi Zhang, Chengwen Li
Software Mentions: 2
Published: almost 6 years ago

10.1042/BSR20210021

Construction and analysis of the abnormal lncRNA–miRNA–mRNA network in hypoxic pulmonary hypertension
Cited by: 5
Author(s): Jie Liu, Yuhua Deng, Zeqin Fan, Shuanglan Xu, Wei Li, Xiaoxian Huang, Xin Xing, Jiao Yang
Software Mentions: 2
Published: over 5 years ago

10.1186/s13068-016-0471-8

Dissection of early transcriptional responses to water stress in Arundo donax L. by unigene-based RNA-seq
Cited by: 31
Author(s): Yuan Fu, Michele Poli, Gaurav Sablok, Bo Wang, Yanchun Liang, Nicola La Porta, Violeta Velikova, Francesco Loreto, Mingai Li, Claudio Varotto
Software Mentions: 2
Published: over 10 years ago

10.1186/s13068-015-0227-x

Genetic basis of the highly efficient yeast Kluyveromyces marxianus: complete genome sequence and transcriptome analyses
Cited by: 131
Author(s): Noppon Lertwattanasakul, Tomoyuki Kosaka, Akira Hosoyama, Yutaka Suzuki, Nadchanok Rodrussamee, Minenosuke Matsutani, Masayuki Murata, Naoko Fujimoto, Suprayogi Suprayogi, Keiko Tsuchikane, Savitree Limtong, Nobuyuki Fujita, Mamoru Yamada
Software Mentions: 2
Published: over 11 years ago

10.1186/s13068-020-01825-6

Evolutionary engineering of E. coli MG1655 for tolerance against isoprenol
Cited by: 12
Author(s): Heiko Babel, Jens O. Krömer
Software Mentions: 2
Published: almost 6 years ago

10.1186/s13068-018-1331-5

Comparative transcriptome analyses of oleaginous Botryococcus braunii race A reveal significant differences in gene expression upon cobalt enrichment
Cited by: 9
Author(s): Pengfei Cheng, Chengxu Zhou, Yan Wu, Zhihui Xu, Jilin Xu, Dongqing Zhou, Yinghui Zhang, Haizhen Wu, Xuezhi Zhang, Tianzhong Liu, Ming Tang, Yang Qiyong, Xiaojun Yan, Jianhua Fan
Software Mentions: 2
Published: almost 8 years ago

10.1186/s13068-015-0357-1

A photorespiratory bypass increases plant growth and seed yield in biofuel crop Camelina sativa
Cited by: 87
Author(s): Jyoti Dalal, Harry O. Lopez, Naresh Vasani, Zhaohui Hu, Jennifer Swift, Roopa Yalamanchili, Mia Dvora, Xiuli Lin, De‐Yu Xie, Rongda Qu, Heike Sederoff
Software Mentions: 2
Published: about 11 years ago

10.1186/s13068-019-1393-z

Kluyveromyces marxianus developing ethanol tolerance during adaptive evolution with significant improvements of multiple pathways
Cited by: 59
Author(s): Wenjuan Mo, Mengzhu Wang, Rongrong Zhan, Yao Yu, Yungang He, Hong Lü
Software Mentions: 2
Published: over 7 years ago

10.1038/s41408-019-0173-0

Identification of lenalidomide resistance pathways in myeloma and targeted resensitization using cereblon replacement, inhibition of STAT3 or targeting of IRF4
Cited by: 57
Author(s): Yuan Xiao Zhu, Chao Shi, Laura A. Bruins, Xuewei Wang, Daniel L. Riggs, Brooke Porter, Jonathan M. Ahmann, Cecília Bonolo de Campos, Esteban Braggio, P. Leif Bergsagel, A. Keith Stewart
Software Mentions: 2
Published: over 7 years ago

10.1038/s41408-020-00404-0

Gene expression profiling-based risk prediction and profiles of immune infiltration in diffuse large B-cell lymphoma
Cited by: 22
Author(s): Selin Merdan, Kritika Subramanian, Turgay Ayer, Johan Van Weyenbergh, Andrés Chang, Jean L. Koff, Christopher R. Flowers
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41413-020-00120-2

MEF2C regulates osteoclastogenesis and pathologic bone resorption via c-FOS
Cited by: 25
Author(s): Takayuki Fujii, Koichi Murata, Se-Hwan Mun, Seyeon Bae, Ye Ji Lee, Tannia Pannellini, Ki‐Woon Kang, David J. Oliver, Kyung‐Hyun Park‐Min, Lionel B. Ivashkiv
Software Mentions: 2
Published: almost 6 years ago

10.1186/s40529-017-0185-7

Transcriptomic analyses reveal clathrin-mediated endocytosis involved in symbiotic seed germination of Gastrodia elata
Cited by: 20
Author(s): Zhiai Xu, Yuanyuan Li, Hong Ling, Sisi Liu, Mengmeng Liu, Juan Chen, Shun‐Xing Guo
Software Mentions: 2
Published: over 9 years ago

10.1038/s41416-020-0923-6

ASCL1-regulated DARPP-32 and t-DARPP stimulate small cell lung cancer growth and neuroendocrine tumour cell proliferation
Cited by: 15
Author(s): Sk Kayum Alam, Li Wang, Yanan Ren, Christina E. Hernandez, Farhad Kosari, Anja C. Roden, Rendong Yang, Luke H. Hoeppner
Software Mentions: 2
Published: over 6 years ago

10.1038/s41416-018-0196-5

MiR-532-5p suppresses renal cancer cell proliferation by disrupting the ETS1-mediated positive feedback loop with the KRAS-NAP1L1/P-ERK axis
Cited by: 58
Author(s): Wei Zhai, Junjie Ma, Ronggang Zhu, Chun‐Fang Xu, Jin Zhang, Yonghui Chen, Zhiguo Chen, Dongkui Gong, Jiayi Zheng, Chen Chen, Saiyang Li, Butang Li, Yiran Huang, Wei Xue, Junhua Zheng
Software Mentions: 2
Published: over 8 years ago

10.1111/bph.15142

Regulation of gene expression by MF63, a selective inhibitor of microsomal PGE synthase 1 (mPGES1) in human osteoarthritic chondrocytes
Cited by: 5
Author(s): Lauri Tuure, Antti Pemmari, Mari Hämäläinen, Teemu Moilanen, Eeva Moilanen
Software Mentions: 2
Published: about 6 years ago

10.1186/s12943-020-01264-9

Identification of a distinct luminal subgroup diagnosing and stratifying early stage prostate cancer by tissue-based single-cell RNA sequencing
Cited by: 42
Author(s): Xing-Hong Ma, Jinan Guo, Kaisheng Liu, Lipeng Chen, Dale Liu, Shaowei Dong, Jinquan Xia, Qiaoyun Long, Yongjian Yue, Pan Zhao, Fengyan Hu, Zhangang Xiao, Xinghua Pan, Kefeng Xiao, Zhiqiang Cheng, Zunfu Ke, Zhe‐Sheng Chen, Chang Zou
Software Mentions: 2
Published: about 6 years ago

10.1186/s12943-020-01259-6

Circular HER2 RNA positive triple negative breast cancer is sensitive to Pertuzumab
Cited by: 83
Author(s): Jie Li, Maoguang Ma, Xuesong Yang, Maolei Zhang, Jixian Luo, Huangkai Zhou, Nunu Huang, Feizhe Xiao, Bingquan Lai, Weiming Lv, Nu Zhang
Software Mentions: 2
Published: about 6 years ago

10.1186/s12943-020-01184-8

CircLONP2 enhances colorectal carcinoma invasion and metastasis through modulating the maturation and exosomal dissemination of microRNA-17
Cited by: 95
Author(s): Kai Han, Feng Wei Wang, Chenhui Cao, Ling Han, Jie Wei Chen, Ri Xin Chen, Zi Hao Feng, Jie Luo, Xiaoyue Jin, Jin ling Duan, Shu Man Li, Ning Fang, Jing Ping Yun, Xin Yuan Guan, Zhi Zhong Pan, Ping Lan, Rui‐Hua Xu, Dan Xie
Software Mentions: 2
Published: over 6 years ago

10.1128/MCB.00651-17

Multilevel Differential Control of Hormone Gene Expression Programs by hnRNP L and LL in Pituitary Cells
Cited by: 6
Author(s): Lei Lei, Wenguang Cao, Ling Liu, Urmi Das, Yujia Wu, Guodong Liu, Muhammad Sohail, Yi Jen Chen, Jiuyong Xie
Software Mentions: 2
Published: over 8 years ago

10.3390/molecules26082294

Physiological and Transcriptomic Analysis Provide Insight into Low Temperature Enhancing Hypericin Biosynthesis in Hypericum perforatum
Cited by: 4
Author(s): Hongyan Su, Jie Li, Sijin Chen, Ping Sun, Hua Xing, Deok‐Chun Yang, Xiaona Zhang, Mengfei Li, Jianhe Wei
Software Mentions: 2
Published: over 5 years ago

10.3390/molecules26133924

A Transcriptomic Approach to the Metabolism of Tetrapyrrolic Photosensitizers in a Marine Annelid
Cited by: 4
Author(s): Maria Leonor Santos, Mariaelena D’Ambrosio, Ana P. Rodrigo, A. Jorge Parola, Pedro M. Costa
Software Mentions: 2
Published: over 5 years ago

10.3390/molecules23112879

Identification of Epigenetic Mechanisms Involved in the Anti-Asthmatic Effects of Descurainia sophia Seed Extract Based on a Multi-Omics Approach
Cited by: 12
Author(s): Su‐Jin Baek, Jin Mi Chun, Tae-Wook Kang, Yun‐Soo Seo, Sung‐Bae Kim, Boseok Seong, Yunji Jang, Ga-Hee Shin, Chul Kim
Software Mentions: 2
Published: almost 8 years ago

10.1002/mgg3.729

Gene signature associated with neuro‐endocrine activity predicting prognosis of pancreatic carcinoma
Cited by: 11
Author(s): Ke Chen, Yiping He, Yuan Liu, Xunan Yang
Software Mentions: 2
Published: over 7 years ago

10.1186/s10020-021-00362-8

An mRNA assay system demonstrates proteasomal-specific degradation contributes to cardiomyopathic phospholamban null mutation
Cited by: 1
Author(s): Eduarde Rohner, Nevin Witman, Jesper Sohlmér, Erwin De Genst, William E. Louch, Makoto Sahara, Kenneth R. Chien
Software Mentions: 2
Published: about 5 years ago

10.1016/j.molmet.2020.101059

Overexpression of the vitamin D receptor (VDR) induces skeletal muscle hypertrophy
Cited by: 51
Author(s): Joseph J. Bass, Asif Nakhuda, Colleen S. Deane, Matthew S. Brook, Daniel J. Wilkinson, Mathew Piasecki, Andrew Philp, Janelle Tarum, Fawzi Kadi, Ditte Andersen, Amadeo Muñoz García, Kyle Smith, Iain J. Gallagher, Nathaniel J. Szewczyk, Mark E. Cleasby, Philip J. Atherton
Software Mentions: 2
Published: almost 6 years ago

10.1007/s12035-018-1368-2

Bezafibrate Upregulates Mitochondrial Biogenesis and Influence Neural Differentiation of Human-Induced Pluripotent Stem Cells
Cited by: 23
Author(s): Justyna Augustyniak, Jacek Lenart, Paweł Gaj, Monika Kolanowska, Krystian Jażdżewski, Piotr P. Stępień, Leonora Bużańska
Software Mentions: 2
Published: about 8 years ago

10.1002/mnfr.201900999

Anthocyanin‐Biofortified Colored Wheat Prevents High Fat Diet–Induced Alterations in Mice: Nutrigenomics Studies
Cited by: 29
Author(s): Saloni Sharma, Pragyanshu Khare, Ashish Kumar, Venkatesh Chunduri, Aman Kumar, Payal Kapoor, Priyanka Mangal, Kanthi Kiran Kondepudi, Mahendra Bishnoi, Monika Garg
Software Mentions: 2
Published: over 6 years ago

10.1002/1878-0261.12884

Tetraspanin 1 promotes endometriosis leading to ovarian clear cell carcinoma
Cited by: 13
Author(s): Hyungcheol Shin, Woo‐Ick Yang, Doo Byung Chay, Eun‐ju Lee, Joon‐Yong Chung, Hyunsoo Kim, Jae‐Hoon Kim
Software Mentions: 2
Published: almost 6 years ago

10.1002/1878-0261.12555

<i>Retracted:</i> Down‐regulation of long noncoding <scp>RNA PVT</scp>1 inhibits esophageal carcinoma cell migration and invasion and promotes cell apoptosis via micro<scp>RNA</scp>‐145‐mediated inhibition of <scp>FSCN</scp>1
Cited by: 56
Author(s): Shuxin Shen, Ké Li, Ying Liu, Chengli Yang, Chao He, Hao-Rang Wang
Software Mentions: 2
Published: about 7 years ago

10.1177/1744806921999013

Modulation of microglial activation states by spinal cord stimulation in an animal model of neuropathic pain: Comparing high rate, low rate, and differential target multiplexed programming
Cited by: 24
Author(s): William J. Smith, David L. Cedeño, Samuel M. Thomas, Courtney A. Kelley, Francesco Vetri, Ricardo Vallejo
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41380-019-0473-6

Mapping the physiological and molecular markers of stress and SSRI antidepressant treatment in S100a10 corticostriatal neurons
Cited by: 16
Author(s): Derya Sargin, Revathy U. Chottekalapanda, Kristina Elice Perit, Victoria Yao, Duong Chu, Daniel W. Sparks, Salina Kalik, Saige K Power, Olga G. Troyanskaya, Eric F. Schmidt, Paul Greengard, Evelyn K. Lambe
Software Mentions: 2
Published: about 7 years ago

10.1016/j.ymthe.2018.08.023

Recombinant BCG Overexpressing phoP-phoR Confers Enhanced Protection against Tuberculosis
Cited by: 14
Author(s): Sang Kyun Ahn, Vanessa Tran, Andrea S. Leung, Mark Ng, Ming Li, Jun Liu
Software Mentions: 2
Published: almost 8 years ago

10.1038/s41385-020-0277-7

Deficiency in the glycosyltransferase Gcnt1 increases susceptibility to tuberculosis through a mechanism involving neutrophils
Cited by: 17
Author(s): Kaori L. Fonseca, Ana Raquel Maceiras, Rita Matos, Luísa Simões-Costa, Jeremy Sousa, Baltazar Cá, Leandro Barros, Ana Fernandes, Stefan Mereiter, R. L. Reis, Joana Gomes, Gustavo Tapia, Paula Rodríguez-Martínez, Montse Martín-Céspedes, Sergo Vashakidze, Shota Gogishvili, Keti Nikolaishvili, Rui Appelberg, Fátima Gärtner, Pedro Rodrigues, Cristina Vilaplana, Celso A. Reis, Ana Magalhães, Margarida Saraiva
Software Mentions: 2
Published: about 6 years ago

10.1038/s41385-019-0231-8

NK cell recruitment limits tissue damage during an enteric helminth infection
Cited by: 20
Author(s): Maria E. Gentile, Yue Li, Amicha Robertson, Kathleen Shah, Ghislaine Fontés, Eva Kaufmann, Barbara Polese, Nargis Khan, Marc Parisien, Hans Markus Münter, Judith N. Mandl, Luda Diatchenko, Maziar Divangahi, Irah L. King
Software Mentions: 2
Published: over 6 years ago

10.1038/s41385-020-00348-5

IL-22 receptor signaling in Paneth cells is critical for their maturation, microbiota colonization, Th17-related immune responses, and anti-Salmonella immunity
Cited by: 33
Author(s): Stephen Gaudino, Michael Beaupre, Xun Lin, Preet Joshi, Sonika Rathi, Patrick A. McLaughlin, Cody Kempen, Neil K. Mehta, Onur Eskiocak, Brian Yueh, Richard S. Blumberg, Adrianus W. M. van der Velden, Kenneth R. Shroyer, Agnieszka B. Bialkowska, Semir Beyaz, Perikala V. Kumar
Software Mentions: 2
Published: over 5 years ago

10.1186/1297-9716-44-93

Monitoring the immune response to vaccination with an inactivated vaccine associated to bovine neonatal pancytopenia by deep sequencing transcriptome analysis in cattle
Cited by: 23
Author(s): Wiebke Demasius, Rosemarie Weikard, Frieder Hadlich, Kerstin Müller, Christa Kühn
Software Mentions: 2
Published: about 13 years ago