bioconductor: dada2 | Projects | Ecosyste.ms: Papers

10.1186/s42523-020-00048-2

Seasonal dynamics and starvation impact on the gut microbiome of urochordate ascidian Halocynthia roretzi
Cited by: 13
Author(s): Jiankai Wei, Hongwei Gao, Yang Yang, Haiming Liu, Haiyan Yu, Zigui Chen, Bo Dong
Software Mentions: 3
Published: over 4 years ago

10.1038/s41396-020-00875-w

The amphibian microbiome exhibits poor resilience following pathogen-induced disturbance
Cited by: 27
Author(s): Andrea J. Jani, Jessie Bushell, Cédric Arisdakessian, Mahdi Belcaid, Daniel M. Boiano, Cathy Brown, Roland A. Knapp
Software Mentions: 3
Published: almost 4 years ago

10.1002/mbo3.1144

Hidden heterogeneity and co‐occurrence networks of soil prokaryotic communities revealed at the scale of individual soil aggregates
Cited by: 14
Author(s): Márton Szoboszlay, Christoph C. Tebbe
Software Mentions: 3
Published: almost 4 years ago

10.1002/mbo3.821

Patterns of community assembly in the developing chicken microbiome reveal rapid primary succession
Cited by: 69
Author(s): Stephanie D. Jurburg, Michael S.M. Brouwer, Daniela Ceccarelli, Jeanet van der Goot, A.J.M. Jansman, Alex Bossers
Software Mentions: 3
Published: over 5 years ago

10.1186/s13071-019-3724-0

Of microbes and mange: consistent changes in the skin microbiome of three canid species infected with Sarcoptes scabiei mites
Cited by: 21
Author(s): Alexandra L. DeCandia, Kennedy N. Leverett, Bridgett M. vonHoldt
Software Mentions: 2
Published: about 5 years ago

10.1186/s40168-019-0772-9

The subway microbiome: seasonal dynamics and direct comparison of air and surface bacterial communities
Cited by: 36
Author(s): Jostein Gohli, Kari Oline Bøifot, Line Victoria Moen, Paulina Pastuszek, Gunnar Skogan, Klas I. Udekwu, Marius Dybwad
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41598-018-37559-7

Microbial basis of Fusarium wilt suppression by Allium cultivation
Cited by: 28
Author(s): Tomoki Nishioka, Malek Marian, Issei Kobayashi, Yuhko Kobayashi, Kyosuke Yamamoto, Hideyuki Tamaki, Haruhisa Suga, Mitsuaki Shimizu
Software Mentions: 2
Published: almost 6 years ago

10.3389/fmicb.2020.01506

Quantification of Cable Bacteria in Marine Sediments via qPCR
Cited by: 10
Author(s): Jeanine S. Geelhoed, Sebastiaan van de Velde, Filip J. R. Meysman
Software Mentions: 2
Published: over 4 years ago

10.1264/jsme2.ME20112

Synthetic Bacterial Community of Duckweed: A Simple and Stable System to Study Plant-microbe Interactions
Cited by: 6
Author(s): Hidehiro Ishizawa, Minami Tada, Masatoshi Kuroda, Daisuke Inoue, Hiroyuki Futamata, Michihiko Ike
Software Mentions: 2
Published: almost 5 years ago

10.1099/mgen.0.000485

Chronic cigarette smoke exposure and pneumococcal infection induce oropharyngeal microbiota dysbiosis and contribute to long-lasting lung damage in mice
Cited by: 6
Author(s): Markus Hilty, Tsering Wüthrich, Aurélie Godel, Roberto Adelfio, Suzanne Aebi, Sabrina Sofia Burgener, Brunhilde Illgen-Wilcke, Charaf Benarafa
Software Mentions: 2
Published: almost 4 years ago

10.1186/s12864-020-07252-z

Exploring protocol bias in airway microbiome studies: one versus two PCR steps and 16S rRNA gene region V3 V4 versus V4
Cited by: 10
Author(s): Christine Drengenes, Tomas Mikal Eagan, Ingvild Haaland, Harald G. Wiker, Rune Nielsen
Software Mentions: 2
Published: almost 4 years ago

10.3390/microorganisms8040614

Microbial Resource Management for Ex Situ Biomethanation of Hydrogen at Alkaline pH
Cited by: 33
Author(s): Washington Logroño, Denny Popp, Sabine Kleinsteuber, Heike Sträuber, Hauke Harms, Marcell Nikolausz
Software Mentions: 2
Published: over 4 years ago

10.1186/s12866-020-01768-w

Metabolic diversity and co-occurrence of multiple Ferrovum species at an acid mine drainage site
Cited by: 8
Author(s): Christen L. Grettenberger, J. R. Havig, Trinity L. Hamilton
Software Mentions: 2
Published: over 4 years ago

10.3389/fimmu.2021.683387

An Immunologic Compatibility Testing Was Not Useful for Donor Selection in Fecal Microbiota Transplantation for Ulcerative Colitis
Cited by: 5
Author(s): Manuel Ponce-Alonso, Carlota García-Hoz, Ana Verónica Halperin, Javier Nuño, Pilar Nicolás, Adolfo Martínez-perez, Juan Ocaña, Juan Carlos García Pérez, Antonio Guerrero, Antonio López-Sanromán, Rafael Cantón, Garbiñe Roy, Rosa del Campo
Software Mentions: 2
Published: over 3 years ago

10.3389/fcimb.2020.00465

Topic Application of the Probiotic Streptococcus dentisani Improves Clinical and Microbiological Parameters Associated With Oral Health
Cited by: 24
Author(s): Milagros Ferrer, Aránzazu López-López, Teodora Nicolescu, Salvadora Perez-Vilaplana, Alba Boix-Amorós, Majda Dzidic, Sandra García, Alejandro Artacho, Carmen Llena, Álex Mira
Software Mentions: 2
Published: about 4 years ago

10.3389/fcimb.2020.00472

Co-infection of Malassezia sympodialis With Bacterial Pathobionts Pseudomonas aeruginosa or Staphylococcus aureus Leads to Distinct Sinonasal Inflammatory Responses in a Murine Acute Sinusitis Model
Cited by: 14
Author(s): Keehoon Lee, Irene Zhang, Shari Kyman, Oliver Kask, Emily K. Cope
Software Mentions: 2
Published: about 4 years ago

10.3389/fnbeh.2018.00140

Effects of Sub-Chronic MPTP Exposure on Behavioral and Cognitive Performance and the Microbiome of Wild-Type and mGlu8 Knockout Female and Male Mice
Cited by: 30
Author(s): Eileen Ruth S. Torres, Tunde Akinyeke, Keaton Stagaman, Robert M. Duvoisin, Charles K. Meshul, Thomas J. Sharpton, Jacob Raber
Software Mentions: 2
Published: over 6 years ago

10.1002/ece3.5768

Geography, seasonality, and host‐associated population structure influence the fecal microbiome of a genetically depauparate Arctic mammal
Cited by: 18
Author(s): Samantha Bird, Erin Prewer, Susan Kutz, Lisa‐Marie Leclerc, Sibelle Torres Vilaça, Christopher J. Kyle
Software Mentions: 2
Published: about 5 years ago

10.1016/j.chom.2019.05.001

Dynamic Modulation of the Gut Microbiota and Metabolome by Bacteriophages in a Mouse Model
Cited by: 286
Author(s): Bryan B. Hsu, Travis E. Gibson, Vladimir Yeliseyev, Qing Liu, Lorena Lyon, Lynn Bry, Pamela A. Silver, Georg K. Gerber
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0249571

Distinct community structures of soil nematodes from three ecologically different sites revealed by high-throughput amplicon sequencing of four 18S ribosomal RNA gene regions
Cited by: 5
Author(s): Harutaro Kenmotsu, Masahiro Ishikawa, Tomokazu Nitta, Yuu Hirose, Toshihiko Eki
Software Mentions: 2
Published: over 3 years ago

10.3390/microorganisms9050987

The Effect of Antimicrobial Treatment upon the Gill Bacteriome of Atlantic Salmon (Salmo salar L.) and Progression of Amoebic Gill Disease (AGD) In Vivo
Cited by: 8
Author(s): Joel Slinger, Mark B. Adams, Chris Stratford, Megan Rigby, James W. Wynne
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pone.0194729

Comparison of the oral microbiome in mouthwash and whole saliva samples
Cited by: 30
Author(s): Xiaozhou Fan, Brandilyn A. Peters, Deborah Min, Jiyoung Ahn, Richard B. Hayes
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-021-95409-5

Association between clinical and environmental factors and the gut microbiota profiles in young South African children
Cited by: 5
Author(s): Kristien Nel Van Zyl, Andrew Whitelaw, Anneke C. Hesseling, James A Seddon, Anne-Marie Demers, Mae Newton-Foot
Software Mentions: 2
Published: over 3 years ago

10.7554/eLife.57051

Modeling transfer of vaginal microbiota from mother to infant in early life
Cited by: 30
Author(s): Martin Steen Mortensen, Morten Arendt Rasmussen, Jakob Stokholm, Asker Brejnrod, Christina Balle, Jonathan Thorsen, Karen A. Krogfelt, Hans Bisgaard, Søren J. Sørensen
Software Mentions: 2
Published: almost 4 years ago

10.1128/mSystems.00271-18

Impact of Preservation Method and 16S rRNA Hypervariable Region on Gut Microbiota Profiling
Cited by: 99
Author(s): Zigui Chen, Pak Chun Hui, Michael K. Hui, Yun Kit Yeoh, Pak-Kin Wong, Max Kam-Kwan Chan, Martin Cs Wong, Siew C. Ng, Francis K.L. Chan, Paul Kay Sheung Chan
Software Mentions: 2
Published: over 5 years ago

10.15698/mic2021.06.752

Proanthocyanidin-enriched cranberry extract induces resilient bacterial community dynamics in a gnotobiotic mouse model
Cited by: 10
Author(s): Catherine Neto, Benedikt M Mortzfeld, John R. Turbitt, Shakti Bhattarai, Vladimir Yeliseyev, Nicholas DiBenedetto, Lynn Bry, Vanni Bucci
Software Mentions: 2
Published: over 3 years ago

10.7717/peerj.8004

Stability of the vaginal, oral, and gut microbiota across pregnancy among African American women: the effect of socioeconomic status and antibiotic exposure
Cited by: 26
Author(s): Anne L. Dunlop, Anna K. Knight, Glen A. Satten, Anya Cutler, Michelle L. Wright, Rebecca Mitchell, Timothy D. Read, Jennifer G. Mullé, Vicki Hertzberg, Cherie C. Hill, Alicia K. Smith, Elizabeth J. Corwin
Software Mentions: 2
Published: about 5 years ago

10.1186/s42523-021-00078-4

The dysbiosis of ovine foot microbiome during the development and treatment of contagious ovine digital dermatitis
Cited by: 16
Author(s): Jennifer Duncan, Joseph W. Angell, Peter Richards, Luca Lenzi, Gareth J. Staton, Dai Grove‐White, Simon R. Clegg, Georgios Oikonomou, Stuart Carter, Nicholas J. Evans
Software Mentions: 2
Published: almost 4 years ago

10.7717/peerj.9593

Improved normalization of species count data in ecology by scaling with ranked subsampling (SRS): application to microbial communities
Cited by: 90
Author(s): Lukas Beule, Petr Karlovský
Software Mentions: 2
Published: over 4 years ago

10.3389/fphys.2019.00179

Combined Effects of Three High-Energy Charged Particle Beams Important for Space Flight on Brain, Behavioral and Cognitive Endpoints in B6D2F1 Female and Male Mice
Cited by: 50
Author(s): Jacob Raber, Joy Yamazaki, Eileen Ruth S. Torres, Nicole Kirchoff, Keaton Stagaman, Thomas J. Sharpton, Mitchell S. Turker, Amy Kronenberg
Software Mentions: 2
Published: over 5 years ago

10.3389/fvets.2020.00017

Development of the Ileal Microbiota in Three Broiler Breeds
Cited by: 51
Author(s): Peter Richards, Joanne L. Fothergill, Marion Bernardeau, Paul Wigley
Software Mentions: 2
Published: almost 5 years ago

10.3389/fvets.2019.00201

Development of the Caecal Microbiota in Three Broiler Breeds
Cited by: 68
Author(s): Peter Richards, Joanne L. Fothergill, Marion Bernardeau, Paul Wigley
Software Mentions: 2
Published: over 5 years ago

10.1264/jsme2.ME19067

Growth Stage-dependent Bacterial Communities in Soybean Plant Tissues: <i>Methylorubrum</i> Transiently Dominated in the Flowering Stage of the Soybean Shoot
Cited by: 17
Author(s): Shintaro Hara, Minoru Matsuda, Kiwamu Minamisawa
Software Mentions: 2
Published: almost 6 years ago

10.1128/AEM.02387-19

Topical Application of Adult Cecal Contents to Eggs Transplants Spore-Forming Microbiota but Not Other Members of the Microbiota to Chicks
Cited by: 12
Author(s): Peter Richards‐Rios, Gail Leeming, Joanne L. Fothergill, Marion Bernardeau, Paul Wigley
Software Mentions: 2
Published: almost 5 years ago

10.1186/s13099-019-0341-6

Microbial imbalance in inflammatory bowel disease patients at different taxonomic levels
Cited by: 189
Author(s): Mohammad Tauqeer Alam, Gregory C. A. Amos, Andrew Murphy, Simon Murch, Elizabeth M. H. Wellington, Ramesh P. Arasaradnam
Software Mentions: 2
Published: almost 5 years ago

10.3389/fmicb.2017.00365

Are Oligotypes Meaningful Ecological and Phylogenetic Units? A Case Study of Microcystis in Freshwater Lakes
Cited by: 52
Author(s): Michelle A. Berry, Jeffrey D. White, Timothy W. Davis, Sunit Jain, Thomas H. Johengen, Gregory J. Dick, Orlando Sarnelle, Vincent J. Denef
Software Mentions: 2
Published: over 7 years ago

10.1093/jas/skaa338

Canola meal in nursery pig diets: growth performance and gut health
Cited by: 9
Author(s): Jinsu Hong, Saymore Petros Ndou, Sam Adams, Joy Scaria, T. A. Woyengo
Software Mentions: 2
Published: about 4 years ago

10.3389/fmicb.2021.693615

Towards Bioleaching of a Vanadium Containing Magnetite for Metal Recovery
Cited by: 7
Author(s): Sören Bellenberg, Stephanie Turner, Laura Seidel, Nathan van Wyk, Ruichi Zhang, Varvara Sachpazidou, Rodrigo F. Embile, Ingar Walder, Tiina Leiviskä, Mark Dopson
Software Mentions: 2
Published: over 3 years ago

10.3389/fmicb.2020.595036

Ecogenomics-Based Mass Balance Model Reveals the Effects of Fermentation Conditions on Microbial Activity
Cited by: 6
Author(s): Jinha Kim, Renwei Mei, Fernanda Paes Wilson, Heyang Yuan, Benjamin T.W. Bocher, Wen Tso Liu
Software Mentions: 2
Published: almost 4 years ago

10.3389/fmicb.2020.01813

PacBio and Illumina MiSeq Amplicon Sequencing Confirm Full Recovery of the Bacterial Community After Subacute Ruminal Acidosis Challenge in the RUSITEC System
Cited by: 13
Author(s): Melanie Brede, Theresa Orton, Beate Pinior, Franz-Ferdinand Roch, Monika Dzieciol, Benjamin Zwirzitz, Martin Wagner, Gerhard Breves, Stefanie U. Wetzels
Software Mentions: 2
Published: over 4 years ago

10.1186/s13756-019-0530-6

Patterns in the longitudinal oropharyngeal microbiome evolution related to ventilator-associated pneumonia
Cited by: 14
Author(s): Rami Sommerstein, Tobias M. Merz, Sabine Berger, Julia G. Kraemer, Jonas Marschall, Markus Hilty
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2021.681210

The Macleaya cordata Symbiont: Revealing the Effects of Plant Niches and Alkaloids on the Bacterial Community
Cited by: 11
Author(s): Fangmeng Lei, Xueduan Liu, Haonan Huang, Shaodong Fu, Kai Zou, Shuangfei Zhang, Li Zhou, Jianguo Zeng, Hongwei Liu, Luhua Jiang, Bo Miao, Yili Liang
Software Mentions: 2
Published: over 3 years ago

10.3390/antiox10060911

Effects of C60 Fullerene on Thioacetamide-Induced Rat Liver Toxicity and Gut Microbiome Changes
Cited by: 8
Author(s): Siniša Đurašević, Snežana Pejić, Ilijana Grigorov, Gorana Nikolić, Dragana Mitić-Ćulafić, Milan Dragićević, Jelena Đorđević, Nevena Todorović Vukotić, Nenad Đorđević, Ana Todorović, Dunja Drakulić, Filip Veljković, Snežana B. Pajović, Zoran Todorović
Software Mentions: 1
Published: over 3 years ago

10.1186/s12876-021-01856-9

Daily, oral FMT for long-term maintenance therapy in ulcerative colitis: results of a single-center, prospective, randomized pilot study
Cited by: 51
Author(s): Jessica W Crothers, Nathaniel D. Chu, Le Thanh Tu Nguyen, Magen Phillips, Cheryl Collins, Karen A. Fortner, Roxana del Rio-Guerra, Brigitte Lavoie, Peter W. Callas, María Alejandra Vélez, Aaron Cohn, Ryan J. Elliott, Wing Fei Wong, Elaine Vo, Rebecca Wilcox, Mark Smith, Zain Kassam, Ralph C. Budd, Eric J. Alm, Gary M. Mawe, Peter L. Moses
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.ppat.1007611

Gut microbiota from high-risk men who have sex with men drive immune activation in gnotobiotic mice and in vitro HIV infection
Cited by: 45
Author(s): Sam X. Li, Sharon Sen, Jennifer M. Schneider, Ka-Na Xiong, Nichole M. Nusbacher, Nancy Moreno-Huizar, Michael J. Shaffer, Abigail J. S. Armstrong, Erin Severs, Kristine A. Kuhn, C. Preston Neff, Martin D. McCarter, Thomas Campbell, Catherine Lozupone, Brent E. Palmer
Software Mentions: 1
Published: over 5 years ago

10.1080/20002297.2019.1687397

High-throughput DNA sequencing of microbiota at interproximal sites
Cited by: 11
Author(s): Miguel Carda‐Diéguez, Luis Alberto Bravo González, Isabel María Morata, Ascensión Vicente, Álex Mira
Software Mentions: 1
Published: about 5 years ago

10.1186/s13073-021-00851-9

Trans-ethnic gut microbial signatures of prediabetic subjects from India and Denmark
Cited by: 28
Author(s): Nishal Kumar Pinna, Ranjit Mohan Anjana, Shruti Saxena, Anirban Dutta, Visvanathan Gnanaprakash, Rameshkumar Gnanavadivel, Sukumaran Aswath, Srividhya Raghavan, Coimbatore Subramanian Shanthi Rani, Venkatesan Radha, Muthuswamy Balasubramanyam, Archana Pant, Trine Nielsen, Torben Jørgensen, Kristine Færch, Alireza Kashani, Camila Alvarez-Silva, Henrik Vestergaard, Tue H. Hansen, Manimozhiyan Arumugam, G. Balakrish Nair, Bhabatosh Das, Oluf Pedersen, Viswanathan Mohan, Sharmila S. Mande
Software Mentions: 1
Published: over 3 years ago

10.3390/microorganisms8071085

Impaired Hypothalamic Microglial Activation in Offspring of Antibiotic-Treated Pregnant/Lactating Rats Is Attenuated by Prebiotic Oligofructose Co-Administration
Cited by: 6
Author(s): Nicole Cho, Alissa C. Nicolucci, Teja Klančič, Weilan Wang, Keith A. Sharkey, Richelle Mychasiuk, Raylene A. Reimer
Software Mentions: 1
Published: over 4 years ago

10.3390/microorganisms7100416

Bacterial and Fungal Diversity Inside the Medieval Building Constructed with Sandstone Plates and Lime Mortar as an Example of the Microbial Colonization of a Nutrient-Limited Extreme Environment (Wawel Royal Castle, Krakow, Poland)
Cited by: 13
Author(s): Magdalena Dyda, Adam Pyzik, Ewa Wilkojc, Beata Kwiatkowska-Kopka, Aleksandra Skłodowska
Software Mentions: 1
Published: about 5 years ago

10.1186/s12863-020-00880-0

A database for ITS2 sequences from nematodes
Cited by: 25
Author(s): Matthew L. Workentine, Rebecca Chen, Shawna Zhu, Stefan Gavriliuc, N. Shaw, Jill de Rijke, Elizabeth Redman, Russell W. Avramenko, Janneke Wit, Jocelyn Poissant, John S. Gilleard
Software Mentions: 1
Published: over 4 years ago

10.3390/nu12030648

Nutritional, Microbial, and Allergenic Changes during the Fermentation of Cashew ‘Cheese’ Product Using a Quinoa-Based Rejuvelac Starter Culture
Cited by: 19
Author(s): Jennifer M. Chen, Kait F. Al, Laura J Craven, Shannon Seney, Margaret Coons, Heather McCormick, Gregor Reid, Colleen O’Connor, Jeremy P. Burton
Software Mentions: 1
Published: over 4 years ago

10.3389/fmicb.2020.607251

Microbial Diversity of Pinnacle and Conical Microbial Mats in the Perennially Ice-Covered Lake Untersee, East Antarctica
Cited by: 7
Author(s): Carla Greco, Dale T. Andersen, Ian Hawes, Alexander M. C. Bowles, Marian L. Yallop, Gary Barker, Anne D. Jungblut
Software Mentions: 1
Published: almost 4 years ago

10.1186/s40168-021-01146-2

Cooperation between host immunity and the gut bacteria is essential for helminth-evoked suppression of colitis
Cited by: 24
Author(s): Adam Shute, Blanca E. Callejas, Shuhua Li, Arthur Wang, Timothy S. Jayme, Christina Ohland, Ian A. Lewis, Brian T. Layden, André G. Buret, Derek M. McKay
Software Mentions: 1
Published: about 3 years ago

10.3390/nu13092978

Integrating Dietary Data into Microbiome Studies: A Step Forward for Nutri-Metaomics
Cited by: 3
Author(s): Francisca Yáñez, Zaida Soler, Manon Oliero, Zhenrong Xie, Iñigo Oyarzun, Gerard Serrano-Gómez, Chaysavanh Manichanh
Software Mentions: 1
Published: about 3 years ago

10.3390/microorganisms8081189

Bacteriomic Profiling of Branchial Lesions Induced by Neoparamoeba perurans Challenge Reveals Commensal Dysbiosis and an Association with Tenacibaculum dicentrarchi in AGD-Affected Atlantic Salmon (Salmo salar L.)
Cited by: 16
Author(s): Joel Slinger, Mark B. Adams, James W. Wynne
Software Mentions: 1
Published: over 4 years ago

10.1038/s41396-020-00881-y

Novel dichloromethane-fermenting bacteria in the Peptococcaceae family
Cited by: 14
Author(s): Sophie I. Holland, Haluk Ertan, Kate Montgomery, Michael Manefield, Matthew Lee
Software Mentions: 1
Published: almost 4 years ago

10.3389/fmicb.2020.577481

Cosmopolitan Distribution of Endozoicomonas-Like Organisms and Other Intracellular Microcolonies of Bacteria Causing Infection in Marine Mollusks
Cited by: 16
Author(s): Irene Cano, David Ryder, Stephen C. Webb, Brian Jones, Cara L. Brosnahan, Noèlia Carrasco, Barbara Bodinier, Dolors Furones, Tobia Pretto, Francesca Carella, Bruno Chollet, Isabelle Arzul, Deborah Cheslett, Evelyn Collins, Karin B. Lohrmann, Ana L. Valdivia, Georgia M. Ward, Marı́a J. Carballal, António Villalba, Ionan Marigómez, Stein Mortensen, Kevin W. Christison, Wakeman C Kevin, Eduardo Bustos, Lyndsay Christie, Matthew Green, Stephen W. Feist
Software Mentions: 1
Published: about 4 years ago

10.1371/journal.pone.0242771

Feeding selenium-biofortified alfalfa hay during the preconditioning period improves growth, carcass weight, and nasal microbial diversity of beef calves
Cited by: 10
Author(s): Jean A. Hall, Anitha Isaiah, Gerd Bobe, Charles T. Estill, Janell K. Bishop-Stewart, T. Zane Davis, Jan S. Suchodolski, Gene J. Pirelli
Software Mentions: 1
Published: almost 4 years ago

10.1128/mSphere.00914-19

Acute Sleep-Wake Cycle Shift Results in Community Alteration of Human Gut Microbiome
Cited by: 36
Author(s): Zhi Li, Zhiyuan Wei, Junyu Chen, Kun Chen, Xuhua Mao, Qisha Liu, Yu Sun, Zixiao Zhang, Yue Zhang, Dan Zhou, Jun‐Ming Tang, Lianhong Qin, Jian‐Huan Chen, Xingyin Liu
Software Mentions: 1
Published: over 4 years ago

10.3390/membranes10110320

Diversity of Acyl Homoserine Lactone Molecules in Anaerobic Membrane Bioreactors Treating Sewage at Psychrophilic Temperatures
Cited by: 12
Author(s): Shamas Tabraiz, Burhan Shamurad, Evangelos Petropoulos, Alex Charlton, Obaidullah Mohiudin, M. A. Khan, Emeka Boniface Ekwenna, Paul J. Sallis
Software Mentions: 1
Published: about 4 years ago

10.1186/s12879-020-4808-3

Natural polymorphisms in HIV-1 CRF01_AE strain and profile of acquired drug resistance mutations in a long-term combination treatment cohort in northeastern China
Cited by: 6
Author(s): Zesong Sun, Jian Ouyang, Bin Zhao, Minghui An, Lin Wang, Haibo Ding, Xiaoxu Han
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pone.0217229

Vaginal microbiota and mucosal pharmacokinetics of tenofovir in healthy women using tenofovir and tenofovir/levonorgestrel vaginal rings
Cited by: 20
Author(s): Andrea Ries Thurman, Jill L. Schwartz, Jacques Ravel, Pawel Gajer, Mark A. Marzinke, Nazita Yousefieh, Sharon Anderson, Gustavo F. Doncel
Software Mentions: 1
Published: over 5 years ago

10.1038/s41396-018-0338-z

Reductive metabolism of the important atmospheric gas isoprene by homoacetogens
Cited by: 17
Author(s): Miriam Kronen, Matthew Lee, Zackary L. Jones, Michael Manefield
Software Mentions: 1
Published: almost 6 years ago

10.3389/fcimb.2021.641005

Vaginal Microbiome Composition in Early Pregnancy and Risk of Spontaneous Preterm and Early Term Birth Among African American Women
Cited by: 31
Author(s): Anne L. Dunlop, Glen A. Satten, Yi‐Juan Hu, Anna K. Knight, Cherie C. Hill, Michelle L. Wright, Alicia K. Smith, Timothy D. Read, Bradley D. Pearce, Elizabeth J. Corwin
Software Mentions: 1
Published: over 3 years ago

10.3389/fmicb.2018.03165

Identification of Microbial Dark Matter in Antarctic Environments
Cited by: 15
Author(s): Jeff S. Bowman
Software Mentions: 1
Published: almost 6 years ago

10.3389/fmicb.2019.00407

Identification of Nitrogen-Fixing Bradyrhizobium Associated With Roots of Field-Grown Sorghum by Metagenome and Proteome Analyses
Cited by: 52
Author(s): Shintaro Hara, Takashi Morikawa, Sawa Wasai, Yasuhiro Kasahara, Taichi Koshiba, Kiyoshi Yamazaki, Toru Fujiwara, Tsuyoshi Tokunaga, Kiwamu Minamisawa
Software Mentions: 1
Published: over 5 years ago

10.3390/microorganisms9091833

Prebiotic, Probiotic, and Synbiotic Consumption Alter Behavioral Variables and Intestinal Permeability and Microbiota in BTBR Mice
Cited by: 11
Author(s): Jodi E. Nettleton, Teja Klančič, Alana Schick, Ashley C. Choo, Ning Cheng, Jane Shearer, Stephanie L. Borgland, Jong M. Rho, Raylene A. Reimer
Software Mentions: 1
Published: about 3 years ago

10.3389/fmicb.2021.671395

The Altitude of Coffee Cultivation Causes Shifts in the Microbial Community Assembly and Biochemical Compounds in Natural Induced Anaerobic Fermentations
Cited by: 14
Author(s): Silvia Juliana Martinez, João Batista Pavesi Simão, Victor Satler Pylro, Rosane Freitas Schwan
Software Mentions: 1
Published: over 3 years ago

10.3390/biology10010013

Microbial Characteristics and Safety of Dairy Manure ComPosting for Reuse as Dairy Bedding
Cited by: 9
Author(s): Haoming Wu, Yan Wang, Lei Dong, Haiyan Hu, Lu Meng, Huimin Liu, Nan Zheng, Jiaqi Wang
Software Mentions: 1
Published: almost 4 years ago

10.12688/f1000research.15704.1

ITSxpress: Software to rapidly trim internally transcribed spacer sequences with quality scores for marker gene analysis
Cited by: 127
Author(s): Adam R. Rivers, Kyle C. Weber, Terrence G. Gardner, Shuang Liu, Shalamar D. Armstrong
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-021-82436-5

Choosing source of microorganisms and processing technology for next generation beet bioinoculant
Cited by: 6
Author(s): Sonia Szymańska, Marcin Sikora, Katarzyna Hrynkiewicz, Jarosław Tyburski, Andrzej Tretyn, Marcin Gołębiewski
Software Mentions: 1
Published: almost 4 years ago

10.3390/nu11061248

Low-Dose Stevia (Rebaudioside A) Consumption Perturbs Gut Microbiota and the Mesolimbic Dopamine Reward System
Cited by: 41
Author(s): Jodi E. Nettleton, Teja Klančič, Alana Schick, Ashley C. Choo, Jane Shearer, Stephanie L. Borgland, Faye Chleilat, Shyamchand Mayengbam, Raylene A. Reimer
Software Mentions: 1
Published: over 5 years ago

10.1016/j.btre.2020.e00572

Diesel-born organosulfur compounds stimulate community re-structuring in a diesel-biodesulfurizing consortium
Cited by: 12
Author(s): Maysoon N. Awadh, Huda Mahmoud, Raeid M. M. Abed, Ashraf M. El Nayal, Nasser Abotalib, Wael Ismail
Software Mentions: 1
Published: almost 4 years ago

10.3390/microorganisms8111806

Clinical and Microbiological Efficacy of Pyrophosphate Containing Toothpaste: A Double-Blinded Placebo-Controlled Randomized Clinical Trial
Cited by: 4
Author(s): In-Pyo Hong, Hyun Gee Lee, Hye Lim Keum, Myong Ji Kim, Ui Won Jung, Kijung Kim, Su Yeon Kim, Taehun Park, Hye Jin Kim, Jin Ju Kim, Woo Jun Sul, Shi An, Jae Kook
Software Mentions: 1
Published: about 4 years ago

Projects: bioconductor: dada2

Papers Mentioning dada2 274