Projects: bioconductor: clusterProfiler
https://packages.ecosyste.ms/registries/bioconductor.org/packages/clusterProfiler
A universal enrichment tool for interpreting omics data
2 versions
Latest release: almost 3 years ago
53 dependent packages
1,189,928 downloads total
Science Score: 75/100
Starting Score: 100 points
Bonuses:
Penalties:
-
-25
Non-science indicators
1 non-scientific terms found
Very Likely Science (75)
Papers Mentioning clusterProfiler 2,223
10.3389/fphar.2021.688746
Poria cum Radix Pini Rescues Barium Chloride-Induced Arrhythmia by Regulating the cGMP-PKG Signalling Pathway Involving ADORA1 in ZebrafishCited by: 2
Author(s): Ning-Juan Yang, Yanru Liu, Zhishu Tang, Jin‐Ao Duan, Yongmei Yan, Zhong-Xing Song, Ming-Geng Wang, Yuru Zhang, Bai-Jin Chang, Mingwen Zhao, Yan-Ting Zhao
Software Mentions: 1
Published: about 5 years ago
10.3389/fgene.2020.00206
CircRNA Expression Profiles and the Potential Role of CircZFP644 in Mice With Severe Acute Pancreatitis via Sponging miR-21-3pCited by: 11
Author(s): Yi Yang, Jiandong Ren, Qilin Huang, Jun Wu, Xiaohui Yuan, Wen Jiang, Yi Wen, Lijun Tang, Haiyan Sun
Software Mentions: 1
Published: over 6 years ago
10.1111/jcmm.16737
The lncRNA HOTAIR regulates autophagy and affects lipopolysaccharide‐induced acute lung injury through the miR‐17‐5p/ <i>ATG2/ATG7/ATG16</i> axisCited by: 5
Author(s): Yujun Li, Zhike Liang, He Huang, Xiaomei Huang, Zexun Mo, Jinwen Tan, Weihong Guo, Ziwen Zhao, Shuquan Wei
Software Mentions: 1
Published: about 5 years ago
10.3389/fmicb.2020.00341
Modulation of Plant and Fungal Gene Expression Upon Cd Exposure and Symbiosis in Ericoid Mycorrhizal Vaccinium myrtillusCited by: 16
Author(s): Salvatore Casarrubia, Elena Martino, Stefania Daghino, Annegret Kohler, Emmanuelle Morin, Hassine‐Radhouane Khouja, Claude Murat, Kerrie Barry, Erika Lindquist, Francis Martin, Silvia Perotto
Software Mentions: 1
Published: over 6 years ago
10.3389/fgene.2021.679150
Identification of a Genome Instability-Associated LncRNA Signature for Prognosis Prediction in Colon CancerCited by: 10
Author(s): Tao Yin, Dongyan Zhao, Shukun Yao
Software Mentions: 1
Published: about 5 years ago
10.1038/s41598-020-61163-3
A Novel Fluorescent Reporter System Identifies Laminin-511/521 as Potent Regulators of Cardiomyocyte MaturationCited by: 20
Author(s): Nawin Chanthra, Tomoyuki Abe, Matthew Miyamoto, Kiyotoshi Sekiguchi, Chulan Kwon, Yutaka Hanazono, Hideki Uosaki
Software Mentions: 1
Published: over 6 years ago
10.3389/fgene.2019.00845
Genome-Wide Analysis of Alternative Splicing Provides Insights Into Stress Response of the Pacific White Shrimp Litopenaeus vannameCited by: 9
Author(s): Xiaoxi Zhang, Jianbo Yuan, Xiaojun Zhang, Xianhui Qin, Jianhai Xiang, Fuhua Li
Software Mentions: 1
Published: almost 7 years ago
10.3390/jcm8010073
Deduction of Novel Genes Potentially Involved in Keratinocytes of Type 2 Diabetes Using Next-Generation Sequencing and Bioinformatics ApproachesCited by: 7
Author(s): En‐Shyh Lin, Wei‐An Chang, Yangyi Chen, Lu Wu, Yi Jen Chen, Po‐Lin Kuo
Software Mentions: 1
Published: over 7 years ago
10.3389/fcvm.2020.602345
Comprehensive Analysis of the Immune Infiltrates and Aberrant Pathways Activation in Atherosclerotic PlaqueCited by: 6
Author(s): Hukui Han, Rongsheng Du, Panke Cheng, Jiancheng Zhang, Chen Yang, Gang Li
Software Mentions: 1
Published: over 5 years ago
10.3389/fmicb.2020.570903
Transcriptomic Profiling of Mouse Brain During Acute and Chronic Infections by Toxoplasma gondii OocystsCited by: 8
Author(s): Rui-Si Hu, Jun-Jun He, Hany M. Elsheikha, Yang Zou, Muhammad Ehsan, Qiao-Ni Ma, Xingquan Zhu, Wei Cong
Software Mentions: 1
Published: almost 6 years ago
10.3389/fmicb.2019.01730
Cold Acclimation Improves the Desiccation Stress Resilience of Polar Strains of Klebsormidium (Streptophyta)Cited by: 10
Author(s): Martin Rippin, Nadine Borchhardt, Ulf Karsten, Burkhard Becker
Software Mentions: 1
Published: about 7 years ago
10.3389/fcell.2021.701073
Genome Instability-Derived Genes Are Novel Prognostic Biomarkers for Triple-Negative Breast CancerCited by: 6
Author(s): Maoni Guo, San Ming Wang
Software Mentions: 1
Published: about 5 years ago
10.3390/jcm10194584
The Potential Role of Proinflammatory Cytokines and Complement Components in the Development of Drug-Induced Neuropathy in Patients with Multiple MyelomaCited by: 4
Author(s): Karolina Łuczkowska, Magdalena Rutka, Dorota Rogińska, Edyta Paczkowska, Bartłomiej Baumert, Sławomir Milczarek, Martyna Górska, Piotr Kulig, Bogumiła Osękowska, Michał Janowski, Krzysztof Safranow, Krzysztof Sommerfeld, Ewa Borowiecka, Piotr Zawodny, Anna Koclęga, Grzegorz Helbig, Bogusław Machaliński
Software Mentions: 1
Published: almost 5 years ago
10.3389/fgene.2021.596794
Identifying Breast Cancer-Related Genes Based on a Novel Computational Framework Involving KEGG Pathways and PPI Network ModularityCited by: 13
Author(s): Yan Zhang, Xu Ju, Liang Tang, Jianming Li, Qingqing Lu, Geng Tian, Binsheng He, Jialiang Yang
Software Mentions: 1
Published: almost 5 years ago
10.3389/fgene.2018.00425
Use of Laplacian Heat Diffusion Algorithm to Infer Novel Genes With Functions Related to UveitisCited by: 6
Author(s): Shiheng Lu, Ke Zhao, Xuefei Wang, Hui Liu, Xiamuxiya Ainiwaer, Yixin Xu, Min Ye
Software Mentions: 1
Published: almost 8 years ago
10.3389/fmicb.2021.679241
The abaI/abaR Quorum Sensing System Effects on Pathogenicity in Acinetobacter baumanniiCited by: 11
Author(s): Xiaoyu Sun, Zhaohui Ni, Jie Tang, Yue Ding, Xinlei Wang, Fan Li
Software Mentions: 1
Published: about 5 years ago
10.1155/2021/5546199
Investigation of the Mechanism of Complement System in Diabetic Nephropathy via Bioinformatics AnalysisCited by: 15
Author(s): Bojun Xu, Lei Wang, Huakui Zhan, Liangbin Zhao, Yuehan Wang, Meng‐Ru Shen, Keyang Xu, Li Li, Xu Luo, Shasha Zhou, Anqi Tang, Gang Liu, Lu Song, Yan Li
Software Mentions: 1
Published: about 5 years ago
10.3389/fgene.2021.732419
Analysis of Genomic Copy Number Variation in Miscarriages During Early and Middle PregnancyCited by: 8
Author(s): Heming Wu, Qingyan Huang, Xia Zhang, Zhikang Yu, Zhixiong Zhong
Software Mentions: 1
Published: almost 5 years ago
10.3389/fgene.2020.579215
Combining Bioinformatics Techniques to Study the Key Immune-Related Genes in Abdominal Aortic AneurysmCited by: 7
Author(s): Han Nie, Jiacong Qiu, Wen Si, Weimin Zhou
Software Mentions: 1
Published: over 5 years ago
10.3389/fgene.2020.00419
Cryopreservation Induces Alterations of miRNA and mRNA Fragment Profiles of Bull SpermCited by: 17
Author(s): Aishao Shangguan, Hao Zhou, Wei Sun, Rui Ding, Xihe Li, Jiajia Li, Yang Zhou, Xing Chen, Fengling Ding, Liguo Yang, Shujun Zhang
Software Mentions: 1
Published: over 6 years ago
10.1038/s41598-021-88253-0
Gene network and biological pathways associated with susceptibility to differentiated thyroid carcinomaCited by: 4
Author(s): Om Kulkarni, Pierre‐Emmanuel Sugier, Julie Guibon, Anne Boland‐Augé, Christine Lonjou, Delphine Bacq‐Daian, Robert Olaso, Carole Rubino, Vincent Souchard, Frédérique Rachédi, Juan J Lence-Anta, Rosa María Bravo Ortiz, Constance Xhaard, Pierre Laurent‐Puig, Claire Mulot, Anne‐Valérie Guizard, Claire Schvartz, Marie‐Christine Boutron‐Ruault, Evgenia Ostroumova, Ausrele Kesminiene, Jean‐François Deleuze, Pascal Guénel, Florent de Vathaire, Thérèse Truong, Fabienne Lesueur
Software Mentions: 1
Published: over 5 years ago
10.3389/fgene.2021.655885
Use of Comparative Transcriptomics Combined With Physiological Analyses to Identify Key Factors Underlying Cadmium Accumulation in Brassica juncea L.Cited by: 8
Author(s): Dawei Zhang, Yunyan Du, Dan He, Dinggang Zhou, Jinfeng Wu, Jia-Shi Peng, Huan Liu, Zhongsong Liu, Mingli Yan
Software Mentions: 1
Published: over 5 years ago
10.3389/fgene.2020.625977
A Seven-Long Non-coding RNA Signature Improves Prognosis Prediction of Lung Adenocarcinoma: An Integrated Competing Endogenous RNA Network AnalysisCited by: 7
Author(s): Rang Li, Kedong Han, Dehua Xu, Xiaolin Chen, Shujin Lan, Yuanjun Liao, Shengnan Sun, Shaoqi Rao
Software Mentions: 1
Published: over 5 years ago