Projects: bioconductor: clusterProfiler
https://packages.ecosyste.ms/registries/bioconductor.org/packages/clusterProfiler
A universal enrichment tool for interpreting omics data
2 versions
Latest release: about 3 years ago
53 dependent packages
1,189,928 downloads total
Science Score: 75/100
Starting Score: 100 points
Bonuses:
Penalties:
-
-25
Non-science indicators
1 non-scientific terms found
Very Likely Science (75)
Papers Mentioning clusterProfiler 2,223
10.3390/ijms22095051
Proteomic Identification of Bombyx mori Organelles Using the Engineered Ascorbate Peroxidase APEX and Development of Silkworm Organelle Proteome Database (SilkOrganPDB)Cited by: 0
Author(s): Li Tian, Chen Xu, Jinzhi Xu, Jian Luo, Bin Yu, Xianzhi Meng, Chunfeng Li, Guoqing Pan, Zeyang Zhou
Software Mentions: 1
Published: over 5 years ago
10.3390/ijms22158089
Long-Term Fluoxetine Administration Causes Substantial Lipidome Alteration of the Juvenile Macaque BrainCited by: 8
Author(s): Anna Tkachev, Elena Stekolshchikova, Daniil Bobrovskiy, Nickolay Anikanov, Polina A Ogurtsova, Dong Ik Park, Anja K.E. Horn, Daria Petrova, Ekaterina Khrameeva, Mari S. Golub, Christoph W. Turck, Philipp Khaitovich
Software Mentions: 1
Published: over 5 years ago
10.3390/ijms22179395
The Regulatory Network of Sturgeon Chondroitin Sulfate on Colorectal Cancer Inhibition by Transcriptomic and Proteomic AnalysisCited by: 1
Author(s): Rongqian Wu, Qian Shen, Guangyue Li, Pinglan Li, Nan Shang
Software Mentions: 1
Published: about 5 years ago
10.18632/aging.202685
Downregulation of FPN1 acts as a prognostic biomarker associated with immune infiltration in lung cancerCited by: 9
Author(s): Bing Liu, Zhen Song, Yumei Fan, Guangyu Zhang, Pengxiu Cao, Danyu Li, Xiaopeng Liu, Yan‐Zhong Chang, Karsoon Tan
Software Mentions: 1
Published: over 5 years ago
10.1186/s12951-021-00810-x
Uterine metabolic disorder induced by silica nanoparticles: biodistribution and bioactivity revealed by labeling with FITCCited by: 13
Author(s): Shuyin Duan, Meihua Zhang, Junxia Li, Jiaqi Tian, Haiyan Yin, Xietong Wang, Lin Zhang
Software Mentions: 1
Published: over 5 years ago
10.1152/jn.00837.2018
Optogenetic and transcriptomic interrogation of enhanced muscle function in the paralyzed mouse whisker padCited by: 5
Author(s): Thomas J. Vajtay, Akhil Bandi, Aman Upadhyay, Mavis R. Swerdel, Ronald P. Hart, Christian R. Lee, David J. Margolis
Software Mentions: 1
Published: over 7 years ago
10.1186/s12935-021-02183-5
Immune classifier-based signatures provide good prognostic stratification and predict the clinical benefits of immune-based therapies for hepatocellular carcinomaCited by: 4
Author(s): Chen Xue, Xinyu Gu, Lanjuan Li
Software Mentions: 1
Published: about 5 years ago
10.1186/s12935-020-01345-1
DNA methylation-based classification and identification of bladder cancer prognosis-associated subgroupsCited by: 14
Author(s): Zijian Tian, Lingfeng Meng, Xingbo Long, Tongxiang Diao, Mao‐Lin Hu, Miao Wang, Ming Liu, Qianqian Wang
Software Mentions: 1
Published: over 6 years ago
10.1186/s12935-021-02054-z
Targeting DNAJC19 overcomes tumor growth and lung metastasis in NSCLC by regulating PI3K/AKT signalingCited by: 4
Author(s): Jianguo Zhou, Peng Yang, Yingming Gao, Taiyu Chen, Pengcheng Li, Ke Xu, Tao Liu, Tao Ren
Software Mentions: 1
Published: over 5 years ago
10.1186/s12935-018-0712-y
Analysis of PD-1 related immune transcriptional profile in different cancer typesCited by: 14
Author(s): Jun Shang, Qian Song, Zaixing Yang, Xiaoyan Sun, Meijuan Xue, Wenjie Chen, Jingcheng Yang, Sihua Wang
Software Mentions: 1
Published: almost 8 years ago
10.1038/s41413-020-00121-1
Osteoclast-derived apoptotic bodies couple bone resorption and formation in bone remodelingCited by: 34
Author(s): Qinyu Ma, Mengmeng Liang, Yutong Wu, Fei Luo, Zaisong Ma, Shiwu Dong, Jiake Xu, Ce Dou
Software Mentions: 1
Published: almost 6 years ago
10.1007/s00262-020-02688-4
Chemotherapy negatively impacts the tumor immune microenvironment in NSCLC: an analysis of pre- and post-treatment biopsies in the multi-center SAKK19/09 studyCited by: 7
Author(s): Michael A. Amrein, E D Bührer, Q Li, Sacha I. Rothschild, Carsten Riether, Rolf Jaggi, Spasenija Savic-Prince, Lukas Bubendorf, Oliver Gautschi, Adrian F. Ochsenbein
Software Mentions: 1
Published: about 6 years ago
10.1186/s12995-021-00308-0
Serum levels of miR-21-5p and miR-339-5p associate with occupational trichloroethylene hypersensitivity syndromeCited by: 4
Author(s): Wei Liu, Jian Zheng, Xiaohu Ren, Yuxuan Xie, Dafeng Lin, Peimao Li, Yuan Lv, Maggie Pui Man Hoi, Yanfang Zhang, Jianjun Li
Software Mentions: 1
Published: over 5 years ago
10.1002/cam4.3820
Construction and validation of an autophagy‐related long noncoding RNA signature for prognosis prediction in kidney renal clear cell carcinoma patientsCited by: 11
Author(s): Junjie Yu, Weipu Mao, Bin Xu, Ming Chen
Software Mentions: 1
Published: over 5 years ago
10.1186/s13068-021-01956-4
Over-expression of an electron transport protein OmcS provides sufficient NADH for d-lactate production in cyanobacteriumCited by: 17
Author(s): Hengkai Meng, Wei Zhang, Huawei Zhu, Fan Yang, Yanping Zhang, Jie Zhou, Yin Li
Software Mentions: 1
Published: over 5 years ago
10.1042/BSR20203565
Uncovering the mechanism of Ge-Gen-Qin-Lian decoction for treating ulcerative colitis based on network pharmacology and molecular docking verificationCited by: 19
Author(s): Lin Xu, Jiaqi Zhang, Yifan Wang, Zedan Zhang, Fengyun Wang, Xudong Tang
Software Mentions: 1
Published: over 5 years ago
10.1155/2019/4237285
FibroAtlas: A Database for the Exploration of Fibrotic Diseases and Their GenesCited by: 9
Author(s): Jinying Liu, Dezhi Sun, Jiale Liu, Hao Xu, Yuan Liu, Yang Li, Lihong Diao, Xun Wang, Dan Wang, Lei Tian, Huimin Zhang, Zhongyang Liu, Weiquan Ren, Fuchu He, Dong Li, Shuzhen Guo
Software Mentions: 1
Published: almost 7 years ago
10.18632/aging.203288
Prognostic value of fatty acid metabolism-related genes in patients with hepatocellular carcinomaCited by: 21
Author(s): Dongsheng He, Lifang Cai, Wei‐Ming Huang, Qing-Qing Weng, Xi Lin, Mengxing You, Shengyin Liao
Software Mentions: 1
Published: over 5 years ago
10.26508/lsa.202000648
CDKL3 promotes osteosarcoma progression by activating Akt/PKBCited by: 6
Author(s): Aina He, Lanjing Ma, Yujing Huang, Haijiao Zhang, Wei Duan, Zexu Li, Fei Teng, Junqing Yuan, Hao Wu, Liguo Liu, Yuqiang Bai, Wentao Dai, Yonggang Wang, Hongtao Li, Yong Sun, Yaling Wang, Chunyan Wang, Ting Yuan, Qingcheng Yang, Songhai Tian, Min Dong, Ren Sheng, Dongxi Xiang
Software Mentions: 1
Published: over 6 years ago
10.1097/MD.0000000000025452
Prognostic value of long noncoding RNA urothelial carcinoma-associated 1 in esophageal carcinomaCited by: 0
Author(s): Hong Zhang, Jie Tian, Jianming Tang, Tianhu Wang
Software Mentions: 1
Published: over 5 years ago
10.1042/BSR20202929
FOXD1 is a prognostic biomarker and correlated with macrophages infiltration in head and neck squamous cell carcinomaCited by: 3
Author(s): Huazhen Liang, Chunning Zhang, Chaoming Li, Changguo Li, Yanli Wang, Hua Lin
Software Mentions: 1
Published: over 5 years ago
10.1186/s12943-020-01279-2
circPARD3 drives malignant progression and chemoresistance of laryngeal squamous cell carcinoma by inhibiting autophagy through the PRKCI-Akt-mTOR pathwayCited by: 86
Author(s): Wei Gao, Huina Guo, Min Niu, Xian Zheng, Yuliang Zhang, Xuting Xue, Yunfeng Bo, Xiaoya Guan, Zhongxun Li, Yujia Guo, Long He, Yu Zhang, Li Li, Ji‐Min Cao, Yongyan Wu
Software Mentions: 1
Published: almost 6 years ago
10.1186/s12943-019-0996-0
Genome-wide identification of cancer-specific alternative splicing in circRNACited by: 57
Author(s): Jing Feng, Ke Chen, Xin Dong, Xiaolong Xu, Yuxuan Jin, Xinyang Zhang, Wenbo Chen, Han Yang, Lin Shen, Yang Gao, Chunjiang He
Software Mentions: 1
Published: over 7 years ago