Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: bioconductor: clusterProfiler
https://packages.ecosyste.ms/registries/bioconductor.org/packages/clusterProfiler
A universal enrichment tool for interpreting omics data
2 versions
Latest release: about 1 year ago
53 dependent packages
1,189,928 downloads total
Papers Mentioning clusterProfiler 2,223
10.1038/s41419-019-1537-x
Cancer testis antigen 55 deficiency attenuates colitis-associated colorectal cancer by inhibiting NF-κB signalingCited by: 8
Author(s): Huan Zhao, Wen-Ming Pan, Huihui Zhang, Yang Song, Jie Chen, Ying Xiang, Bingxin Gu, Shangze Li, Runlei Du, Xiaodong Zhang
Software Mentions: 1
Published: over 5 years ago
10.1155/2021/9213205
Circular RNA hsa_circ_0006117 Facilitates Pancreatic Cancer Progression by Regulating the miR-96-5p/KRAS/MAPK Signaling PathwayCited by: 4
Author(s): Tao Liu, Lei Zhou, Zhiwei He, Yankun Chen, Xueyi Jiang, Jian Xu, Jianxin Jiang
Software Mentions: 1
Published: about 3 years ago
10.1038/s41419-020-02752-y
WFDC2 suppresses prostate cancer metastasis by modulating EGFR signaling inactivationCited by: 23
Author(s): Yaoyi Xiong, Lushun Yuan, Song Chen, Huimin Xu, Tianchen Peng, Lingao Ju, Gang Wang, Yu Xiao, Xinghuan Wang
Software Mentions: 1
Published: over 4 years ago
10.3390/cancers13092195
Enhanced Efficacy of Aurora Kinase Inhibitors in G2/M Checkpoint Deficient TP53 Mutant Uterine Carcinomas Is Linked to the Summation of LKB1–AKT–p53 InteractionsCited by: 0
Author(s): Katherine N. Lynch, Joyce F. Liu, Nikolas Kesten, Kin-Hoe Chow, Aniket Shetty, Rui-Yang He, Mosammat Faria Afreen, Liping Yuan, Ursula A. Matulonis, Whitfield B. Growdon, Michael G. Muto, Neil S. Horowitz, Colleen M. Feltmate, Michael J. Worley, Ross S. Berkowitz, Christopher P. Crum, Bo R. Rueda, Sarah J. Hill
Software Mentions: 1
Published: over 3 years ago
10.18632/oncotarget.13379
Assessment of differentially expressed plasma microRNAs in nonsyndromic cleft palate and nonsyndromic cleft lip with cleft palateCited by: 27
Author(s): Jingyun Li, Jijun Zou, Qian Li, Ling Chen, Yanli Gao, Hui Yan, Bei Zhou, Jun Li
Software Mentions: 1
Published: about 8 years ago
10.1016/j.gpb.2019.05.004
The Biological Significance of Multi-copy Regions and Their Impact on Variant DiscoveryCited by: 0
Author(s): Jing Sun, Yanfang Zhang, Minhui Wang, Qian Guan, Xiujia Yang, Jin Xia Ou, Mingchen Yan, Chengrui Wang, Yan Zhang, Zhi-Hao Li, Chunhong Lan, Mao Chen, Hongwei Zhou, Bingtao Hao, Zhenhai Zhang
Software Mentions: 1
Published: about 4 years ago
10.1186/s13059-020-02239-1
Genome structure variation analyses of peach reveal population dynamics and a 1.67 Mb causal inversion for fruit shapeCited by: 42
Author(s): Jiantao Guan, Yaoguang Xu, Yan Yu, Jun Fu, Fei Ren, Jiying Guo, Jianbo Zhao, Quan Jiang, Jianhua Wei, Hua Xie
Software Mentions: 1
Published: almost 4 years ago
10.3390/cancers12040801
Extracellular Protease ADAMTS1 Is Required at Early Stages of Human Uveal Melanoma Development by Inducing Stemness and Endothelial-Like Features on Tumor CellsCited by: 14
Author(s): Carlos Peris-Torres, María del Carmen Plaza-Calonge, Raúl López-Domínguez, Silvia Domínguez-García, Antonio Barrientos‐Durán, Pedro Carmona-Sáez, Juan Carlos Rodrı́guez-Manzaneque
Software Mentions: 1
Published: over 4 years ago
10.3390/genes11101225
Systems Level Analysis and Identification of Pathways and Key Genes Associated with DeliriumCited by: 5
Author(s): Yukiko Takahashi, Tomoyoshi Terada, Yoshinori Muto
Software Mentions: 1
Published: about 4 years ago
10.18632/oncotarget.17452
Prognostic value of DNA repair genes based on stratification of glioblastomasCited by: 11
Author(s): Kai Sun, Qiwen Duan, Gang Liu, Jing‐Min Lu
Software Mentions: 1
Published: over 7 years ago
10.18632/oncotarget.19699
RNA-seq based gene expression analysis of ovarian granulosa cells exposed to zearalenone <i>in vitro</i>: significance to steroidogenesisCited by: 19
Author(s): Guoliang Zhang, Ruiqian Zhang, Xiao‐Feng Sun, Shun‐Feng Cheng, Yufeng Wang, Chuanliang Ji, Yanzhong Feng, Jie Yu, Wei Ge, Yong Zhao, Shiduo Sun, Wei Shen, Lan Li
Software Mentions: 1
Published: over 7 years ago
10.1172/jci.insight.144863
IGF1R controls mechanosignaling in myofibroblasts required for pulmonary alveologenesisCited by: 12
Author(s): Hua He, John Snowball, Fei Sun, Cheng-Lun Na, Jeffrey A. Whitsett
Software Mentions: 1
Published: over 3 years ago
10.3389/fonc.2019.01492
Cross-Cancer Pleiotropic Analysis Reveals Novel Susceptibility Loci for Lung CancerCited by: 6
Author(s): Limin Wang, Meng Zhu, Yuzhuo Wang, Jingyi Fan, Qi Sun, Mengmeng Ji, Xikang Fan, Jian Xie, Juncheng Dai, Guangfu Jin, Zhibin Hu, Hongxia Ma, Hongbing Shen
Software Mentions: 1
Published: almost 5 years ago
10.3389/fonc.2021.579351
TIM-3 as a Prognostic Marker and a Potential Immunotherapy Target in Human Malignant Tumors: A Meta-Analysis and Bioinformatics ValidationCited by: 32
Author(s): Kui Zang, Liangliang Hui, Min Wang, Ying Huang, Xingxing Zhu, Bin Yao
Software Mentions: 1
Published: over 3 years ago
10.1186/s40104-019-0326-9
Genome-wide identification of RNA editing in seven porcine tissues by matched DNA and RNA high-throughput sequencingCited by: 15
Author(s): Yuebo Zhang, Longchao Zhang, Jin Yue, Wei Xia, Ligang Wang, Xin Liu, Hongmei Gao, Xinhua Hou, Fuping Zhao, Hua Yan, Lixian Wang
Software Mentions: 1
Published: over 5 years ago
10.1007/s10815-016-0745-x
Differentially expressed genes in preimplantation human embryos: potential candidate genes for blastocyst formation and implantationCited by: 13
Author(s): Erika Munch, Amy E.T. Sparks, Jesús González Bosquet, Lane K. Christenson, Eric J. Devor, Bradley J. Van Voorhis
Software Mentions: 1
Published: over 8 years ago
10.7150/jca.33737
Integrin-Linked Kinase Is Involved In the Proliferation and Invasion of Esophageal Squamous Cell CarcinomaCited by: 8
Author(s): Zhonghua Ning, Xiaozhong Zhu, Yinghua Jiang, Aidi Gao, Shitao Zou, Chao Gu, Chao He, Yihong Chen, Wei‐Qun Ding, Jundong Zhou
Software Mentions: 1
Published: almost 5 years ago
10.18632/oncotarget.21872
A prognostic 4-gene expression signature for patients with HER2-negative breast cancer receiving taxane and anthracycline-based chemotherapyCited by: 5
Author(s): Pu Cheng, Zhen Wang, Guoming Hu, Qi Huang, Mengjiao Han, Jian Huang
Software Mentions: 1
Published: about 7 years ago
10.7150/jca.39328
Effect of CELSR3 on the Cell Cycle and Apoptosis of Hepatocellular Carcinoma CellsCited by: 8
Author(s): Zucheng Xie, Yi‐Wu Dang, Huayu Wu, Rong‐Quan He, Jie Ma, Zhigang Peng, Minhua Rong, Zhekun Li, Jiapeng Yang, Yizhao Jiang, Gang Chen, Lihua Yang
Software Mentions: 1
Published: almost 5 years ago
10.3389/fonc.2020.580027
Relevance of STK11 Mutations Regarding Immune Cell Infiltration, Drug Sensitivity, and Cellular Processes in Lung AdenocarcinomaCited by: 7
Author(s): Zhenqing Li, Bo Ding, Jianxun Xu, Kai Mao, Pengfei Zhang, Qun Xue
Software Mentions: 1
Published: almost 4 years ago
10.7150/jca.50370
Increased IGFBP7 Expression Correlates with Poor Prognosis and Immune Infiltration in Gastric CancerCited by: 13
Author(s): Zhao Qi, Rulin Zhao, Conghua Song, Huan Wang, Jianfang Rong, Fangfei Wang, Lili Yan, Yanping Song, Yong Xie
Software Mentions: 1
Published: almost 4 years ago
10.3389/fonc.2021.659720
Jiyuan Oridonin A Overcomes Differentiation Blockade in Acute Myeloid Leukemia Cells With MLL Rearrangements via Multiple Signaling PathwaysCited by: 10
Author(s): Mei Qu, Yu Duan, Min Zhao, Zhanju Wang, Mengjie Zhao, Yao Zhao, Haihua Wang, Ke Yu, Ying Liu, Hong‐Min Liu, Liuya Wei, Zhenbo Hu
Software Mentions: 1
Published: over 3 years ago
10.7150/jca.48661
Signature of gene aberrant alternative splicing events in pancreatic adenocarcinoma prognosisCited by: 5
Author(s): Jun Yao, Yuchen Tang, Bin Yi, Jian Yang, Yaqin Chai, Ning Yin, Zixiang Zhang, Yijun Wei, Dechun Li, Jian Zhou
Software Mentions: 1
Published: almost 4 years ago