Projects: bioconductor: clusterProfiler
https://packages.ecosyste.ms/registries/bioconductor.org/packages/clusterProfiler
A universal enrichment tool for interpreting omics data
2 versions
Latest release: almost 3 years ago
53 dependent packages
1,189,928 downloads total
Science Score: 75/100
Starting Score: 100 points
Bonuses:
Penalties:
-
-25
Non-science indicators
1 non-scientific terms found
Very Likely Science (75)
Papers Mentioning clusterProfiler 2,223
10.1155/2021/5556212
Network Pharmacology/Metabolomics-Based Validation of AMPK and PI3K/AKT Signaling Pathway as a Central Role of Shengqi Fuzheng Injection Regulation of Mitochondrial Dysfunction in Cancer-Related FatigueCited by: 11
Author(s): Wei Guo, Shan Liu, Xiongwei Zheng, Zhiwei Xiao, Hanrui Chen, Lingling Sun, Chi Zhang, Zhijie Wang, Lizhu Lin
Software Mentions: 1
Published: about 5 years ago
10.3389/fpls.2018.01311
Genome-Wide Association Mapping of Starch Pasting Properties in Maize Using Single-Locus and Multi-Locus ModelsCited by: 58
Author(s): Yongsheng Xu, Tiantian Yang, Yao Zhou, Yin Su, Pengcheng Li, Jun Liu, Shaohang Xu, Zefeng Yang, Chenwu Xu
Software Mentions: 1
Published: about 8 years ago
10.3389/fphar.2021.622268
Comprehensive RNA-Seq Analysis of Potential Therapeutic Targets of Gan–Dou–Fu–Mu Decoction for Treatment of Wilson Disease Using a Toxic Milk Mouse ModelCited by: 4
Author(s): Taohua Wei, Wenjie Hao, Lulu Tang, Huan Wu, Shi Huang, Yongmei Yang, Nannan Qian, Jie Liu, Weiren Yang, Xianchun Duan
Software Mentions: 1
Published: over 5 years ago
10.3389/fphar.2021.644140
The Mechanism of Lavender Essential Oil in the Treatment of Acute Colitis Based on “Quantity–Effect” Weight Coefficient Network PharmacologyCited by: 13
Author(s): Yao Wang, Junbo Zou, Yanzhuo Jia, Xiaofei Zhang, Changli Wang, Yajun Shi, Deliang Guo, Zhenfeng Wu, Wang Fang
Software Mentions: 1
Published: over 5 years ago
10.1038/s41598-017-00826-0
Identification of IGF-1-enhanced cytokine expressions targeted by miR-181d in glioblastomas via an integrative miRNA/mRNA regulatory network analysisCited by: 27
Author(s): Kuo Hao Ho, Peng Hsu Chen, Edward Hsi, Chwen Ming Shih, Wei Chiao Chang, Chia Hsiung Cheng, Cheng Lin, Ku Chung Chen
Software Mentions: 1
Published: over 9 years ago
10.3390/jcm10194584
The Potential Role of Proinflammatory Cytokines and Complement Components in the Development of Drug-Induced Neuropathy in Patients with Multiple MyelomaCited by: 4
Author(s): Karolina Łuczkowska, Magdalena Rutka, Dorota Rogińska, Edyta Paczkowska, Bartłomiej Baumert, Sławomir Milczarek, Martyna Górska, Piotr Kulig, Bogumiła Osękowska, Michał Janowski, Krzysztof Safranow, Krzysztof Sommerfeld, Ewa Borowiecka, Piotr Zawodny, Anna Koclęga, Grzegorz Helbig, Bogusław Machaliński
Software Mentions: 1
Published: almost 5 years ago
10.3389/fphar.2021.618844
How Aconiti Radix Cocta can Treat Gouty Arthritis Based on Systematic Pharmacology and UPLC-QTOF-MS/MSCited by: 10
Author(s): Xietao Ye, Jinlin Wu, Dayong Zhang, Zelun Lan, Songhong Yang, Jing Zhu, Ming Yang, Qingjie Gong, Lei Zhong
Software Mentions: 1
Published: over 5 years ago
10.3389/fphar.2021.594833
Computational and In Vitro Analysis of Plumbagin’s Molecular Mechanism for the Treatment of Hepatocellular CarcinomaCited by: 6
Author(s): Yanfei Wei, Yu‐Hsuan Lin, Wanjun Chen, Shasha Li, Lei Jin, Delun Huang
Software Mentions: 1
Published: over 5 years ago
10.3389/fpls.2021.713984
Comparative Transcriptomics and Metabolomics Reveal an Intricate Priming Mechanism Involved in PGPR-Mediated Salt Tolerance in TomatoCited by: 39
Author(s): Ιfigeneia Mellidou, Aggeliki Ainalidou, Αναστασία Παπαδοπούλου, Kleopatra Leontidou, Savvas Genitsaris, Evangelos Karagiannis, Bram Van de Poel, Katerina Karamanoli
Software Mentions: 1
Published: about 5 years ago
10.3389/fphar.2021.720619
The Downregulation of eIF3a Contributes to Vemurafenib Resistance in Melanoma by Activating ERK via PPP2R1BCited by: 4
Author(s): Shilong Jiang, Zhi-Bin Wang, Tao Zhu, Ting Jiang, Jiang-Feng Fei, Chong Liu, Chao Luo, Yan Cheng, Zhao‐Qian Liu
Software Mentions: 1
Published: about 5 years ago
10.3389/fphar.2020.532041
Ginsenoside Re Treatment Attenuates Myocardial Hypoxia/Reoxygenation Injury by Inhibiting HIF-1α UbiquitinationCited by: 11
Author(s): Huiyuan Sun, Shukuan Ling, Di Zhao, Jianwei Li, Yang Li, Hua Qu, Ronghui Du, Ying Zhang, Feng Xu, Yuheng Li, Caizhi Liu, Guangming Zhong, Shuai Liang, Zizhong Liu, Xingcheng Gao, Xiaoyan Jin, Yingxian Li, Donglei Shi
Software Mentions: 1
Published: about 6 years ago
10.3389/fpls.2021.643971
Cocktail Therapy of Fosthiazate and Cupric-Ammoniun Complex for Citrus HuanglongbingCited by: 8
Author(s): Jingwei Duan, Xue Li, Junzhe Zhang, Baoping Cheng, Shuhan Liu, Hongmei Li, Quan Zhou, Wenli Chen
Software Mentions: 1
Published: over 5 years ago
10.1038/s41598-021-89778-0
Alternative splicing acts as an independent prognosticator in ovarian carcinomaCited by: 10
Author(s): Yu Ouyang, Kaide Xia, Yang Xue, Shichao Zhang, Li Wang, Shan Ren, Huanjiao Jenny Zhou, Yi Liu, Fuzhou Tang
Software Mentions: 1
Published: over 5 years ago
10.3389/fonc.2021.680873
Significance of DMBT1 in Papillary Thyroid Carcinoma Concurrent With Hashimoto’s ThyroiditisCited by: 2
Author(s): Xiao‐Xiong Gan, Ya-Yi Li, Sijin Li, Shi-Sen Mo, Jianhua Feng, Fei Shen, Wei Cai, Ye-Qian Lai, Bo Xu
Software Mentions: 1
Published: about 5 years ago
10.1155/2020/9210748
Comparative Study of PPAR<i>γ</i> Targets in Human Extravillous and Villous CytotrophoblastsCited by: 8
Author(s): Fulin Liu, Christine Rouault, Mickaël Guesnon, Wencan Zhu, Karine Clément, Séverine A. Degrelle, Thierry Fournier
Software Mentions: 1
Published: over 6 years ago
10.1038/s41598-021-88253-0
Gene network and biological pathways associated with susceptibility to differentiated thyroid carcinomaCited by: 4
Author(s): Om Kulkarni, Pierre‐Emmanuel Sugier, Julie Guibon, Anne Boland‐Augé, Christine Lonjou, Delphine Bacq‐Daian, Robert Olaso, Carole Rubino, Vincent Souchard, Frédérique Rachédi, Juan J Lence-Anta, Rosa María Bravo Ortiz, Constance Xhaard, Pierre Laurent‐Puig, Claire Mulot, Anne‐Valérie Guizard, Claire Schvartz, Marie‐Christine Boutron‐Ruault, Evgenia Ostroumova, Ausrele Kesminiene, Jean‐François Deleuze, Pascal Guénel, Florent de Vathaire, Thérèse Truong, Fabienne Lesueur
Software Mentions: 1
Published: over 5 years ago
10.3389/fonc.2021.697308
Identification of Key Genes Mutations Associated With the Radiosensitivity by Whole Exome Sequencing in Pancreatic CancerCited by: 3
Author(s): Bin Hu, Xiumei Ma, Rongfu Huang, Zheng Wu, Jun Lü, Yuntao Guo, Jianmin Tang, Chunhui Ma, Jun Ma, Lei Zhang, Yongrui Bai
Software Mentions: 1
Published: about 5 years ago
10.1038/s41598-021-86134-0
A study of differential circRNA and lncRNA expressions in COVID-19-infected peripheral bloodCited by: 44
Author(s): Yongdong Wu, Tiejun Zhao, Ronghai Deng, Xiaoping Xia, Bin Li, Xunzhang Wang
Software Mentions: 1
Published: over 5 years ago
10.1155/2021/6657658
Serum Fetuin-B Levels Are Elevated in Women with Metabolic Syndrome and Associated with Increased Oxidative StressCited by: 6
Author(s): Shiyao Xue, Hongdong Han, Shunli Rui, Gangyi Yang, Yizhou Huang, Bin Zhan, Shan Geng, Hua Liu, Chen Chen, Ling Li
Software Mentions: 1
Published: almost 5 years ago
10.3389/fpls.2021.639104
Comparative Phenotypic and Transcriptomic Analysis Reveals Key Responses of Upland Cotton to Salinity Stress During PostgerminationCited by: 8
Author(s): Jingxia Zhang, Pei Zhang, Xuehan Huo, Yinghui Gao, Yu Chen, Zhangqiang Song, Furong Wang, Jun Zhang
Software Mentions: 1
Published: over 5 years ago
10.1038/s41598-021-81642-5
Transcriptome profiling of cells exposed to particular and intense electromagnetic radiation emitted by the "SG-III" prototype laser facilityCited by: 4
Author(s): Jiangbin Wei, Qiwu Shi, Li Xiong, Guang Xin, Yi Tao, Yunqing Xiao, Wenlong Huang
Software Mentions: 1
Published: over 5 years ago
10.1038/s41598-020-79086-4
Different expression of lipid metabolism-related genes in Shandong black cattle and Luxi cattle based on transcriptome analysisCited by: 27
Author(s): Ruili Liu, Xianxun Liu, Xuejin Bai, Xiao Chen, Yanjun Dong
Software Mentions: 1
Published: over 5 years ago
10.3389/fphar.2021.688746
Poria cum Radix Pini Rescues Barium Chloride-Induced Arrhythmia by Regulating the cGMP-PKG Signalling Pathway Involving ADORA1 in ZebrafishCited by: 2
Author(s): Ning-Juan Yang, Yanru Liu, Zhishu Tang, Jin‐Ao Duan, Yongmei Yan, Zhong-Xing Song, Ming-Geng Wang, Yuru Zhang, Bai-Jin Chang, Mingwen Zhao, Yan-Ting Zhao
Software Mentions: 1
Published: about 5 years ago