Projects: bioconductor: clusterProfiler
https://packages.ecosyste.ms/registries/bioconductor.org/packages/clusterProfiler
A universal enrichment tool for interpreting omics data
2 versions
Latest release: about 3 years ago
53 dependent packages
1,189,928 downloads total
Science Score: 75/100
Starting Score: 100 points
Bonuses:
Penalties:
-
-25
Non-science indicators
1 non-scientific terms found
Very Likely Science (75)
Papers Mentioning clusterProfiler 2,223
10.1186/s12864-018-5050-x
Prioritizing candidate genes post-GWAS using multiple sources of data for mastitis resistance in dairy cattleCited by: 47
Author(s): Zexi Cai, Bernt Guldbrandtsen, Mogens Sandø Lund, Goutam Sahana
Software Mentions: 1
Published: about 8 years ago
10.1155/2020/4086864
Identification of the Active Constituents and Significant Pathways of Cangfu Daotan Decoction for the Treatment of PCOS Based on Network PharmacologyCited by: 13
Author(s): Wenting Xu, Mengyu Tang, Jiahui Wang, Lihong Wang
Software Mentions: 1
Published: over 6 years ago
10.1016/j.anireprosci.2020.106621
RNA-Seq analysis reveals functionally relevant coding and non-coding RNAs in crossbred bull spermatozoaCited by: 14
Author(s): M. Arul Prakash, A. Kumaresan, Manish Kumar Sinha, K. Elango, Tushar Kumar Mohanty, Tirtha Kumar Datta, Jane M. Morrell
Software Mentions: 1
Published: about 6 years ago
10.3389/fcimb.2021.728415
Difference of Intrahost Dynamics of the Second Human Pegivirus and Hepatitis C Virus in HPgV-2/HCV-Coinfected PatientsCited by: 4
Author(s): Yuanhao Liang, Fengyu Hu, Hang Fan, Linghua Li, Zhengwei Wan, Haiying Wang, Jingwei Shui, Yuanping Zhou, Yigang Tong, Weiping Cai, Shixing Tang
Software Mentions: 1
Published: about 5 years ago
10.3389/fonc.2020.573501
Development of a Novel Serum Exosomal MicroRNA Nomogram for the Preoperative Prediction of Lymph Node Metastasis in Esophageal Squamous Cell CarcinomaCited by: 9
Author(s): Tong Liu, Du Li, Yunshan Wang, Shanyu Gao, Juan Li, Peilong Li, Zhaowei Sun, Helen Binang, Chuanxin Wang
Software Mentions: 1
Published: about 6 years ago
10.1016/j.ebiom.2021.103378
Clinical features and prognostic factors in Covid-19: A prospective cohort studyCited by: 72
Author(s): Sanne de Bruin, Lieuwe D. J. Bos, Marian A. van Roon, Anita M. Tuip-de Boer, Alex R. Schuurman, Marleen J.A. Koel-Simmelinck, Harm Jan Bogaard, Pieter R. Tuinman, Michiel A. van Agtmael, Jörg Hamann, Charlotte E. Teunissen, W. Joost Wiersinga, Aeilko H. Zwinderman, Matthijs C. Brouwer, Diederik van de Beek, Alexander P.J. Vlaar, Anne Geke Algera, Brent Appelman, Frank van Baarle, Diane Bax, Martijn Beudel, Marije Bomers, Peter I. Bonta, Michela Botta, Justin de Brabander, Godelieve de Bree, David T.P. Buis, Marianna Bugiani, Esther Bulle, Osoul Chouchane, Alex Cloherty, Maurits C F J de Rotte, Mirjam Dijkstra, Dave A. Dongelmans, Romein W. G. Dujardin, Paul Elbers, Lucas M. Fleuren, Suzanne E. Geerlings, T.B.H. Geijtenbeek, Armand R.J. Girbes, Abraham Goorhuis, Martin P. Grobusch, Florianne Hafkamp, Laura A. Hagens, Vanessa Harris, Robert Hemke, Sabine Hermans, Leo Heunks, Markus W. Hollmann, Janneke Horn, Joppe W. Hovius, Menno D. de Jong, Rutger Koning, Endry H T Lim, Niels van Mourik, Jeannine Nellen, Esther J. Nossent, Frederique Paulus, Edgar Peters, Dan Piña-Fuentes, Tom van der Poll, Bennedikt Preckel, Jan M. Prins, Jorinde Raasveld, Tom D. Y. Reijnders, Michiel Schinkel, Femke A. P. Schrauwen, Marcus J. Schultz, Alex Schuurmans, Jaap Schuurmans, Kim C.E. Sigaloff, Marleen A. Slim, Patrick Smeele, Marry R. Smit, Cornelis Stijnis, Willemke Stilma, Patrick Thoral, Anissa M. Tsonas, Marc van der Valk, Denise P. Veelo, Carolien Volleman, Heder de Vries, Lonneke A. van Vught, Michèle van Vugt, Dorien Wouters
Software Mentions: 1
Published: over 5 years ago
10.1038/s41598-021-81642-5
Transcriptome profiling of cells exposed to particular and intense electromagnetic radiation emitted by the "SG-III" prototype laser facilityCited by: 4
Author(s): Jiangbin Wei, Qiwu Shi, Li Xiong, Guang Xin, Yi Tao, Yunqing Xiao, Wenlong Huang
Software Mentions: 1
Published: almost 6 years ago
10.1155/2020/1875980
Analysis of the Mechanism of Zhichuanling Oral Liquid in show="" $6#?=""Treating Bronchial Asthma Based on Network PharmacologyCited by: 7
Author(s): Wang Rui-yin, Jiangtao Lin
Software Mentions: 1
Published: almost 7 years ago
10.3389/fgene.2021.679150
Identification of a Genome Instability-Associated LncRNA Signature for Prognosis Prediction in Colon CancerCited by: 10
Author(s): Tao Yin, Dongyan Zhao, Shukun Yao
Software Mentions: 1
Published: over 5 years ago
10.1155/2019/1243743
Network Pharmacology of Yougui Pill Combined with Buzhong Yiqi Decoction for the Treatment of Sexual DysfunctionCited by: 16
Author(s): Yangyun Wang, Wandong Yu, Chaoliang Shi, Jiao Wei, Junhong Li, Jianchao Ge, Yang Hong, Guowei Shi
Software Mentions: 1
Published: almost 7 years ago
10.1186/s10020-020-00153-7
Vitamins D3 and D2 have marked but different global effects on gene expression in a rat oligodendrocyte precursor cell lineCited by: 6
Author(s): Manuela Mengozzi, Andrew Hesketh, Giselda Bucca, Pietro Ghezzi, Colin P. Smith
Software Mentions: 1
Published: over 6 years ago
10.3389/fgene.2020.00206
CircRNA Expression Profiles and the Potential Role of CircZFP644 in Mice With Severe Acute Pancreatitis via Sponging miR-21-3pCited by: 11
Author(s): Yi Yang, Jiandong Ren, Qilin Huang, Jun Wu, Xiaohui Yuan, Wen Jiang, Yi Wen, Lijun Tang, Haiyan Sun
Software Mentions: 1
Published: over 6 years ago
10.1155/2020/8897879
Network Pharmacology-Based Study on the Mechanism of Gegen Qinlian Decoction against Colorectal CancerCited by: 5
Author(s): Qiaowei Fan, Lin Guo, Jing-Ming Guan, Jing Chen, Yujing Fan, Zhendong Chen, Hulun Li
Software Mentions: 1
Published: almost 6 years ago
10.7150/ijbs.39779
Therapeutic Targeting of CDK7 Suppresses Tumor Progression in Intrahepatic CholangiocarcinomaCited by: 11
Author(s): Huadong Chen, Chen‐Song Huang, Qiong‐Cong Xu, Fuxi Li, Xi‐Tai Huang, Jie‐Qin Wang, Shijin Li, Wei Zhao, Xiaoyu Yin
Software Mentions: 1
Published: almost 7 years ago
10.1155/2020/8873371
Evidence of TCM Theory in Treating the Same Disease with Different Methods: Treatment of Pneumonia with Ephedra sinica and Scutellariae Radix as an ExampleCited by: 3
Author(s): Liping Sun, Dandan Wang, Yan Xu, Wenxiu Qi, Han Li
Software Mentions: 1
Published: almost 6 years ago
10.3390/ijms22179395
The Regulatory Network of Sturgeon Chondroitin Sulfate on Colorectal Cancer Inhibition by Transcriptomic and Proteomic AnalysisCited by: 1
Author(s): Rongqian Wu, Qian Shen, Guangyue Li, Pinglan Li, Nan Shang
Software Mentions: 1
Published: about 5 years ago
10.1155/2020/3829092
Network Pharmacology Strategy to Investigate the Pharmacological Mechanism of HuangQiXiXin Decoction on Cough Variant Asthma and Evidence-Based Medicine Approach ValidationCited by: 7
Author(s): Qingqing Xia, Mingtao Liu, Hui Li, Lijun Tian, Qi Jia, Yufeng Zhang
Software Mentions: 1
Published: about 6 years ago
10.3389/fendo.2019.00877
Di (2-ethylhexyl) Phthalate Exposure Impairs the microRNAs Expression Profile During Primordial Follicle AssemblyCited by: 7
Author(s): Jiaona Zhang, Ruiqian Zhang, Jing-Cai Liu, Lan Li, Wei Shen, Xiaowen Sun
Software Mentions: 1
Published: almost 7 years ago
10.1186/s13046-018-0970-5
Dysregulation of miR-6868-5p/FOXM1 circuit contributes to colorectal cancer angiogenesisCited by: 19
Author(s): Ye Wang, WU Mei-juan, Zengjie Lei, Mengxi Huang, Zhiping Li, Liya Wang, Qijun Cao, Dong Cho Han, Yue Chang, Yanyan Chen, Fei Liu, Lijun Xue, Xiaobei Mao, Jiao Geng, Yanan Chen, Tingting Dai, Lili Ren, Qin Wang, Hong-Ju Yu, Cheng Chen, Xiaoyuan Chen
Software Mentions: 1
Published: almost 8 years ago
10.1155/2021/8057587
Virtual Screening of Cablin Patchouli Herb as a Treatment for Heat Stress: A Study Based on Network Pharmacology, Molecular Docking, and Experimental VerificationCited by: 2
Author(s): Yan Xu, Lizhong Ding, Zhongtian Wang, Han Li, Liping Sun
Software Mentions: 1
Published: over 5 years ago
10.1186/s12863-020-00869-9
Whole genome characterization of autochthonous Bos taurus brachyceros and introduced Bos indicus indicus cattle breeds in Cameroon regarding their adaptive phenotypic traits and pathogen resistanceCited by: 6
Author(s): Archile Paguem, Babette Abanda, Mbunkah Daniel Achukwi, Praveen Baskaran, Stefan Czemmel, Alfons Renz, Albert Eisenbarth
Software Mentions: 1
Published: over 6 years ago
10.1186/s12864-018-5006-1
Discovering lncRNA mediated sponge interactions in breast cancer molecular subtypesCited by: 38
Author(s): Gülden Olgun, Özgür Şahin, Öznur Taştan
Software Mentions: 1
Published: about 8 years ago
10.1155/2019/7631365
Using Network Pharmacology to Explore Potential Treatment Mechanism for Coronary Heart Disease Using Chuanxiong and Jiangxiang Essential Oils in Jingzhi Guanxin PrescriptionsCited by: 8
Author(s): Jia Tai, Junbo Zou, Xiaofei Zhang, Yu Wang, Yulin Liang, Deliang Guo, Mei Wang, Cheng‐Bin Cui, Jing Wang, Jiangxue Cheng, Yajun Shi
Software Mentions: 1
Published: about 7 years ago