Projects: bioconductor: clusterProfiler
https://packages.ecosyste.ms/registries/bioconductor.org/packages/clusterProfiler
A universal enrichment tool for interpreting omics data
2 versions
Latest release: almost 3 years ago
53 dependent packages
1,189,928 downloads total
Science Score: 75/100
Starting Score: 100 points
Bonuses:
Penalties:
-
-25
Non-science indicators
1 non-scientific terms found
Very Likely Science (75)
Papers Mentioning clusterProfiler 2,223
10.3389/fonc.2020.573501
Development of a Novel Serum Exosomal MicroRNA Nomogram for the Preoperative Prediction of Lymph Node Metastasis in Esophageal Squamous Cell CarcinomaCited by: 9
Author(s): Tong Liu, Du Li, Yunshan Wang, Shanyu Gao, Juan Li, Peilong Li, Zhaowei Sun, Helen Binang, Chuanxin Wang
Software Mentions: 1
Published: almost 6 years ago
10.18632/aging.103826
Comprehensive analysis of TGF-β-induced mRNAs and ncRNAs in hepatocellular carcinomaCited by: 8
Author(s): Jintai Liang, Jinli Liao, Tongtong Liu, Yu Wang, Jingyuan Wen, Ning Cai, Zhao Hu, Weiqi Xu, Ganxun Li, Zeyang Ding, Bixiang Zhang
Software Mentions: 1
Published: almost 6 years ago
10.18632/aging.202315
CCDC170 affects breast cancer apoptosis through IRE1 pathwayCited by: 10
Author(s): Qiong Wang, Yanrui Zhao, Hong Zheng, Qinghua Wang, Wei Wang, Ben Liu, Hongwei Han, Lina Zhang, Kexin Chen
Software Mentions: 1
Published: almost 6 years ago
10.1038/s41598-019-43924-x
FN1, SPARC, and SERPINE1 are highly expressed and significantly related to a poor prognosis of gastric adenocarcinoma revealed by microarray and bioinformaticsCited by: 98
Author(s): Li Li, Zhou Zhu, Yong Zhao, Qi Zhang, Xiaoting Wu, Bei Miao, Jiang Cao, Sujuan Fei
Software Mentions: 1
Published: over 7 years ago
10.1186/s12967-020-02539-x
Gut microbiota from coronary artery disease patients contributes to vascular dysfunction in mice by regulating bile acid metabolism and immune activationCited by: 29
Author(s): Honghong Liu, Ran Tian, Hui Wang, Siqin Feng, Hanyu Li, Ying Xiao, Xiaodong Luan, Zhiyu Zhang, Na Shi, Haitao Niu
Software Mentions: 1
Published: almost 6 years ago
10.7717/peerj.8380
Identification of prognostic splicing factors and exploration of their potential regulatory mechanisms in pancreatic adenocarcinomaCited by: 4
Author(s): Minhua Rong, Zhan-Hui Zhu, Ying Guan, Meiwei Li, Jiashuo Zheng, Yue-qi Huang, Dan‐Ming Wei, Yingmei Li, Ximei Wu, Hui-ping Bu, Hui-liu Peng, Xiaolin Wei, Guosheng Li, Mingxuan Li, Ming‐Hui Chen, Su-Hua Huang
Software Mentions: 1
Published: over 6 years ago
10.3389/fmolb.2021.685088
Serum Extracellular Vesicle–Derived miR-124-3p as a Diagnostic and Predictive Marker for Early-Stage Acute Ischemic StrokeCited by: 15
Author(s): Qi Zheng, Yingying Zhao, Yu Chin Su, Bin Cao, Jianjun Yang, Qinghe Xing
Software Mentions: 1
Published: about 5 years ago
10.1155/2020/2862701
Bioinformatics Analysis of Key Genes and circRNA-miRNA-mRNA Regulatory Network in Gastric CancerCited by: 20
Author(s): Yiting Tian, Xing Yang, Zheng Zhang, Rui Peng, Luyu Zhang, Yan Sun
Software Mentions: 1
Published: about 6 years ago
10.1155/2020/6472153
Establishment and Evaluation of a 6-Gene Survival Risk Assessment Model Related to Lung Adenocarcinoma MicroenvironmentCited by: 14
Author(s): Zhitian Wang, Huiling Xu, Linhai Zhu, Tianyu He, Wang Lv, Zhigang Wu
Software Mentions: 1
Published: over 6 years ago
10.1038/s41598-019-54401-w
Differential DNA methylation in high-grade serous ovarian cancer (HGSOC) is associated with tumor behaviorCited by: 21
Author(s): Henry Reyes Pineda, Eric J. Devor, Akshaya Warrier, A.M. Newtson, Jordan Mattson, Vincent Wagner, Gabrielle N. Duncan, Kimberly K. Leslie, Jesús González Bosquet
Software Mentions: 1
Published: almost 7 years ago
10.1155/2021/9025481
NR3C2-Related Transcriptome Profile and Clinical Outcome in Invasive Breast CarcinomaCited by: 5
Author(s): Jianjun Lu, Fang Hu, Yingling Zhou
Software Mentions: 1
Published: over 5 years ago
10.1155/2020/8862228
Expression and Prognostic Analysis of Integrins in Gastric CancerCited by: 7
Author(s): Junfu Wang, Ye Wang, Siwen Zhang, Yeyang Chen, Yue Qiu, Shao-Yi Duan, Bopei Li, Junqiang Chen
Software Mentions: 1
Published: almost 6 years ago
10.1155/2021/6611018
A Network Pharmacology to Explore the Mechanism of Calculus Bovis in the Treatment of Ischemic StrokeCited by: 8
Author(s): Fangchen Liu, Ling Li, Jian Chen, Ying Wu, Yongbing Cao, Ping Zhong
Software Mentions: 1
Published: over 5 years ago
10.3389/fmicb.2020.00341
Modulation of Plant and Fungal Gene Expression Upon Cd Exposure and Symbiosis in Ericoid Mycorrhizal Vaccinium myrtillusCited by: 16
Author(s): Salvatore Casarrubia, Elena Martino, Stefania Daghino, Annegret Kohler, Emmanuelle Morin, Hassine‐Radhouane Khouja, Claude Murat, Kerrie Barry, Erika Lindquist, Francis Martin, Silvia Perotto
Software Mentions: 1
Published: over 6 years ago
10.1155/2020/1673486
Identification of Key Genes and Long Noncoding RNA-Associated Competing Endogenous RNA (ceRNA) Networks in Early-Onset PreeclampsiaCited by: 14
Author(s): Zhan Zhang, Ping Wang, Lin-Lin Zhang, Chenxi Huang, Jun Gao, Yingying Li, Bo Yang
Software Mentions: 1
Published: over 6 years ago
10.1186/s12885-021-08517-w
TBX5-AS1, an enhancer RNA, is a potential novel prognostic biomarker for lung adenocarcinomaCited by: 10
Author(s): Lin Cheng, Tong Han, Bolin Chen, Kechao Nie, Weijun Peng
Software Mentions: 1
Published: about 5 years ago
10.1186/s12885-021-08029-7
The characteristics of circRNA as competing endogenous RNA in pathogenesis of acute myeloid leukemiaCited by: 7
Author(s): Siyuan Zhang
Software Mentions: 1
Published: over 5 years ago
10.1155/2020/3159831
Clinical Significance and Prognostic Value of miR-28-5p in Colon CancerCited by: 4
Author(s): Jilin Li, Kezhi Li, Min Xie, Yanping Tang, Yin-Lin Tang, Bang-li Hu
Software Mentions: 1
Published: over 6 years ago
10.1038/s41598-020-61163-3
A Novel Fluorescent Reporter System Identifies Laminin-511/521 as Potent Regulators of Cardiomyocyte MaturationCited by: 20
Author(s): Nawin Chanthra, Tomoyuki Abe, Matthew Miyamoto, Kiyotoshi Sekiguchi, Chulan Kwon, Yutaka Hanazono, Hideki Uosaki
Software Mentions: 1
Published: over 6 years ago
10.1155/2018/9303486
Identification of Six Potentially Long Noncoding RNAs as Biomarkers Involved Competitive Endogenous RNA in Clear Cell Renal Cell CarcinomaCited by: 24
Author(s): Kang Yang, Xiaofan Lu, Pengfei Luo, Jie Zhang
Software Mentions: 1
Published: almost 8 years ago
10.3389/fmicb.2020.570903
Transcriptomic Profiling of Mouse Brain During Acute and Chronic Infections by Toxoplasma gondii OocystsCited by: 8
Author(s): Rui-Si Hu, Jun-Jun He, Hany M. Elsheikha, Yang Zou, Muhammad Ehsan, Qiao-Ni Ma, Xingquan Zhu, Wei Cong
Software Mentions: 1
Published: almost 6 years ago
10.1155/2020/8873371
Evidence of TCM Theory in Treating the Same Disease with Different Methods: Treatment of Pneumonia with Ephedra sinica and Scutellariae Radix as an ExampleCited by: 3
Author(s): Liping Sun, Dandan Wang, Yan Xu, Wenxiu Qi, Han Li
Software Mentions: 1
Published: almost 6 years ago
10.3389/fmicb.2019.01730
Cold Acclimation Improves the Desiccation Stress Resilience of Polar Strains of Klebsormidium (Streptophyta)Cited by: 10
Author(s): Martin Rippin, Nadine Borchhardt, Ulf Karsten, Burkhard Becker
Software Mentions: 1
Published: about 7 years ago