Projects: bioconductor: clusterProfiler
https://packages.ecosyste.ms/registries/bioconductor.org/packages/clusterProfiler
A universal enrichment tool for interpreting omics data
2 versions
Latest release: over 2 years ago
53 dependent packages
1,189,928 downloads total
Science Score: 75/100
Starting Score: 100 points
Bonuses:
Penalties:
-
-25
Non-science indicators
1 non-scientific terms found
Very Likely Science (75)
Papers Mentioning clusterProfiler 2,223
10.3389/fonc.2020.580027
Relevance of STK11 Mutations Regarding Immune Cell Infiltration, Drug Sensitivity, and Cellular Processes in Lung AdenocarcinomaCited by: 7
Author(s): Zhenqing Li, Bo Ding, Jianxun Xu, Kai Mao, Pengfei Zhang, Qun Xue
Software Mentions: 1
Published: over 5 years ago
10.3389/fnut.2021.639467
Network and 16S rRNA Sequencing-Combined Approach Provides Insightal Evidence of Vitamin K2 for Salt-Sensitive HypertensionCited by: 6
Author(s): Tianhao Liu, Minghao Chen, Wan-qing Tu, Qiuer Liang, Wencong Tao, Jin Zhen, Xiao Ye, Liguo Chen
Software Mentions: 1
Published: over 5 years ago
10.1155/2020/9210748
Comparative Study of PPAR<i>γ</i> Targets in Human Extravillous and Villous CytotrophoblastsCited by: 8
Author(s): Fulin Liu, Christine Rouault, Mickaël Guesnon, Wencan Zhu, Karine Clément, Séverine A. Degrelle, Thierry Fournier
Software Mentions: 1
Published: about 6 years ago
10.1038/s41598-019-54401-w
Differential DNA methylation in high-grade serous ovarian cancer (HGSOC) is associated with tumor behaviorCited by: 21
Author(s): Henry Reyes Pineda, Eric J. Devor, Akshaya Warrier, A.M. Newtson, Jordan Mattson, Vincent Wagner, Gabrielle N. Duncan, Kimberly K. Leslie, Jesús González Bosquet
Software Mentions: 1
Published: over 6 years ago
10.3390/jcm10194584
The Potential Role of Proinflammatory Cytokines and Complement Components in the Development of Drug-Induced Neuropathy in Patients with Multiple MyelomaCited by: 4
Author(s): Karolina Łuczkowska, Magdalena Rutka, Dorota Rogińska, Edyta Paczkowska, Bartłomiej Baumert, Sławomir Milczarek, Martyna Górska, Piotr Kulig, Bogumiła Osękowska, Michał Janowski, Krzysztof Safranow, Krzysztof Sommerfeld, Ewa Borowiecka, Piotr Zawodny, Anna Koclęga, Grzegorz Helbig, Bogusław Machaliński
Software Mentions: 1
Published: over 4 years ago
10.1038/s41598-017-00826-0
Identification of IGF-1-enhanced cytokine expressions targeted by miR-181d in glioblastomas via an integrative miRNA/mRNA regulatory network analysisCited by: 27
Author(s): Kuo Hao Ho, Peng Hsu Chen, Edward Hsi, Chwen Ming Shih, Wei Chiao Chang, Chia Hsiung Cheng, Cheng Lin, Ku Chung Chen
Software Mentions: 1
Published: about 9 years ago
10.1038/s41598-021-89778-0
Alternative splicing acts as an independent prognosticator in ovarian carcinomaCited by: 10
Author(s): Yu Ouyang, Kaide Xia, Yang Xue, Shichao Zhang, Li Wang, Shan Ren, Huanjiao Jenny Zhou, Yi Liu, Fuzhou Tang
Software Mentions: 1
Published: about 5 years ago
10.1038/s41598-021-88253-0
Gene network and biological pathways associated with susceptibility to differentiated thyroid carcinomaCited by: 4
Author(s): Om Kulkarni, Pierre‐Emmanuel Sugier, Julie Guibon, Anne Boland‐Augé, Christine Lonjou, Delphine Bacq‐Daian, Robert Olaso, Carole Rubino, Vincent Souchard, Frédérique Rachédi, Juan J Lence-Anta, Rosa María Bravo Ortiz, Constance Xhaard, Pierre Laurent‐Puig, Claire Mulot, Anne‐Valérie Guizard, Claire Schvartz, Marie‐Christine Boutron‐Ruault, Evgenia Ostroumova, Ausrele Kesminiene, Jean‐François Deleuze, Pascal Guénel, Florent de Vathaire, Thérèse Truong, Fabienne Lesueur
Software Mentions: 1
Published: about 5 years ago
10.1038/s41598-018-34334-6
DNA methylation and associated gene expression in blood prior to lung cancer diagnosis in the Norwegian Women and Cancer cohortCited by: 28
Author(s): Torkjel M. Sandanger, Therese Haugdahl Nøst, Florence Guida, Charlotta Rylander, Gianluca Campanella, David C. Muller, Jenny van Dongen, Dorret I. Boomsma, Mattias Johansson, Paolo Víneis, Roel Vermeulen, Eiliv Lund, Marc Chadeau‐Hyam
Software Mentions: 1
Published: over 7 years ago
10.1155/2021/6657658
Serum Fetuin-B Levels Are Elevated in Women with Metabolic Syndrome and Associated with Increased Oxidative StressCited by: 6
Author(s): Shiyao Xue, Hongdong Han, Shunli Rui, Gangyi Yang, Yizhou Huang, Bin Zhan, Shan Geng, Hua Liu, Chen Chen, Ling Li
Software Mentions: 1
Published: over 4 years ago
10.1038/s41598-019-39582-8
Integrative Analysis Revealing Human Adipose-Specific Genes and Consolidating Obesity LociCited by: 17
Author(s): Jinsoo Ahn, Huiguang Wu, Kichoon Lee
Software Mentions: 1
Published: over 7 years ago
10.1038/s41598-021-86134-0
A study of differential circRNA and lncRNA expressions in COVID-19-infected peripheral bloodCited by: 44
Author(s): Yongdong Wu, Tiejun Zhao, Ronghai Deng, Xiaoping Xia, Bin Li, Xunzhang Wang
Software Mentions: 1
Published: about 5 years ago
10.3389/fonc.2020.567042
Expressions of miR-302a, miR-105, and miR-888 Play Critical Roles in Pathogenesis, Radiotherapy, and Prognosis on Rectal Cancer Patients: A Study From Rectal Cancer Patients in a Swedish Rectal Cancer Trial of Preoperative Radiotherapy to Big Database AnalysesCited by: 7
Author(s): Meng Wei, Surajit Pathak, Xueli Zhang, Gunnar Adell, Ingvar Jarlsfelt, Birgitta Holmlund, Ziqiang Wang, Alexander S Zhang, Hong Zhang, Zong‐Guang Zhou, Xiao‐Feng Sun
Software Mentions: 1
Published: over 5 years ago
10.3389/fonc.2021.616372
Identification and Confirmation of the miR-30 Family as a Potential Central Player in Tobacco-Related Head and Neck Squamous Cell CarcinomaCited by: 6
Author(s): Tingting Zhang, Xueqiong Zhu, Qiang Sun, Xing Qin, Zhen Zhang, Yongdong Feng, Ming Yan, Wantao Chen
Software Mentions: 1
Published: almost 5 years ago
10.3389/fonc.2021.579351
TIM-3 as a Prognostic Marker and a Potential Immunotherapy Target in Human Malignant Tumors: A Meta-Analysis and Bioinformatics ValidationCited by: 32
Author(s): Kui Zang, Liangliang Hui, Min Wang, Ying Huang, Xingxing Zhu, Bin Yao
Software Mentions: 1
Published: over 5 years ago
10.1038/s41598-019-43924-x
FN1, SPARC, and SERPINE1 are highly expressed and significantly related to a poor prognosis of gastric adenocarcinoma revealed by microarray and bioinformaticsCited by: 98
Author(s): Li Li, Zhou Zhu, Yong Zhao, Qi Zhang, Xiaoting Wu, Bei Miao, Jiang Cao, Sujuan Fei
Software Mentions: 1
Published: about 7 years ago
10.3389/fonc.2021.591545
PAFAH1B3 Expression Is Correlated With Gastric Cancer Cell Proliferation and Immune InfiltrationCited by: 8
Author(s): Tianyu Xie, Xin Guo, Di Wu, Shuo Li, Yuhan Lu, Xinxin Wang, Lin Chen
Software Mentions: 1
Published: over 5 years ago
10.1038/s41598-020-61163-3
A Novel Fluorescent Reporter System Identifies Laminin-511/521 as Potent Regulators of Cardiomyocyte MaturationCited by: 20
Author(s): Nawin Chanthra, Tomoyuki Abe, Matthew Miyamoto, Kiyotoshi Sekiguchi, Chulan Kwon, Yutaka Hanazono, Hideki Uosaki
Software Mentions: 1
Published: over 6 years ago
10.1038/s41598-021-81642-5
Transcriptome profiling of cells exposed to particular and intense electromagnetic radiation emitted by the "SG-III" prototype laser facilityCited by: 4
Author(s): Jiangbin Wei, Qiwu Shi, Li Xiong, Guang Xin, Yi Tao, Yunqing Xiao, Wenlong Huang
Software Mentions: 1
Published: over 5 years ago
10.3389/fonc.2019.01492
Cross-Cancer Pleiotropic Analysis Reveals Novel Susceptibility Loci for Lung CancerCited by: 6
Author(s): Limin Wang, Meng Zhu, Yuzhuo Wang, Jingyi Fan, Qi Sun, Mengmeng Ji, Xikang Fan, Jian Xie, Juncheng Dai, Guangfu Jin, Zhibin Hu, Hongxia Ma, Hongbing Shen
Software Mentions: 1
Published: over 6 years ago
10.1155/2021/5556212
Network Pharmacology/Metabolomics-Based Validation of AMPK and PI3K/AKT Signaling Pathway as a Central Role of Shengqi Fuzheng Injection Regulation of Mitochondrial Dysfunction in Cancer-Related FatigueCited by: 11
Author(s): Wei Guo, Shan Liu, Xiongwei Zheng, Zhiwei Xiao, Hanrui Chen, Lingling Sun, Chi Zhang, Zhijie Wang, Lizhu Lin
Software Mentions: 1
Published: almost 5 years ago
10.1038/s41598-020-79086-4
Different expression of lipid metabolism-related genes in Shandong black cattle and Luxi cattle based on transcriptome analysisCited by: 27
Author(s): Ruili Liu, Xianxun Liu, Xuejin Bai, Xiao Chen, Yanjun Dong
Software Mentions: 1
Published: over 5 years ago
10.3389/fonc.2021.659720
Jiyuan Oridonin A Overcomes Differentiation Blockade in Acute Myeloid Leukemia Cells With MLL Rearrangements via Multiple Signaling PathwaysCited by: 10
Author(s): Mei Qu, Yu Duan, Min Zhao, Zhanju Wang, Mengjie Zhao, Yao Zhao, Haihua Wang, Ke Yu, Ying Liu, Hong‐Min Liu, Liuya Wei, Zhenbo Hu
Software Mentions: 1
Published: about 5 years ago