Projects: bioconductor: clusterProfiler
https://packages.ecosyste.ms/registries/bioconductor.org/packages/clusterProfiler
A universal enrichment tool for interpreting omics data
2 versions
Latest release: almost 3 years ago
53 dependent packages
1,189,928 downloads total
Science Score: 75/100
Starting Score: 100 points
Bonuses:
Penalties:
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-25
Non-science indicators
1 non-scientific terms found
Very Likely Science (75)
Papers Mentioning clusterProfiler 2,223
10.3390/ijms22095051
Proteomic Identification of Bombyx mori Organelles Using the Engineered Ascorbate Peroxidase APEX and Development of Silkworm Organelle Proteome Database (SilkOrganPDB)Cited by: 0
Author(s): Li Tian, Chen Xu, Jinzhi Xu, Jian Luo, Bin Yu, Xianzhi Meng, Chunfeng Li, Guoqing Pan, Zeyang Zhou
Software Mentions: 1
Published: over 5 years ago
10.1186/s12920-021-00994-z
Deregulation of lncRNA HIST1H2AG-6 and AIM1-3 in peripheral blood mononuclear cells is associated with newly diagnosed type 2 diabetesCited by: 3
Author(s): Hui Jiang, Peian Lou, Xiaoluo Chen, Chenguang Wu, Shihe Shao
Software Mentions: 1
Published: over 5 years ago
10.1186/s12885-021-08029-7
The characteristics of circRNA as competing endogenous RNA in pathogenesis of acute myeloid leukemiaCited by: 7
Author(s): Siyuan Zhang
Software Mentions: 1
Published: over 5 years ago
10.1186/s12920-020-0661-x
Comprehensive molecular characterization of inhibitors of apoptosis proteins (IAPs) for therapeutic targeting in cancerCited by: 28
Author(s): Jianfeng Liang, Wanni Zhao, Pan Tong, Ping Li, Yuanli Zhao, Hua Li, Jun Liang
Software Mentions: 1
Published: over 6 years ago
10.3390/biomedicines9080863
CD40 Agonist Monoclonal Antibody-Mediated Hepatitis in TNF-Receptor 1 Gene Knockout MiceCited by: 0
Author(s): Oksana Raabe, Thomas Birchler, Hubert Rehrauer, Elisabeth Eppler
Software Mentions: 1
Published: about 5 years ago
10.1155/2021/6657658
Serum Fetuin-B Levels Are Elevated in Women with Metabolic Syndrome and Associated with Increased Oxidative StressCited by: 6
Author(s): Shiyao Xue, Hongdong Han, Shunli Rui, Gangyi Yang, Yizhou Huang, Bin Zhan, Shan Geng, Hua Liu, Chen Chen, Ling Li
Software Mentions: 1
Published: almost 5 years ago
10.7150/ijbs.39779
Therapeutic Targeting of CDK7 Suppresses Tumor Progression in Intrahepatic CholangiocarcinomaCited by: 11
Author(s): Huadong Chen, Chen‐Song Huang, Qiong‐Cong Xu, Fuxi Li, Xi‐Tai Huang, Jie‐Qin Wang, Shijin Li, Wei Zhao, Xiaoyu Yin
Software Mentions: 1
Published: over 6 years ago
10.1186/s13046-018-0970-5
Dysregulation of miR-6868-5p/FOXM1 circuit contributes to colorectal cancer angiogenesisCited by: 19
Author(s): Ye Wang, WU Mei-juan, Zengjie Lei, Mengxi Huang, Zhiping Li, Liya Wang, Qijun Cao, Dong Cho Han, Yue Chang, Yanyan Chen, Fei Liu, Lijun Xue, Xiaobei Mao, Jiao Geng, Yanan Chen, Tingting Dai, Lili Ren, Qin Wang, Hong-Ju Yu, Cheng Chen, Xiaoyuan Chen
Software Mentions: 1
Published: almost 8 years ago
10.1155/2021/8862821
Network Pharmacology and Bioinformatics Methods Reveal the Mechanism of Zao-Jiao-Ci in the Treatment of LSCCCited by: 1
Author(s): Feng Xiang, Linman Li, Jieling Lin, Shasha Li, Guiyuan Peng
Software Mentions: 1
Published: about 5 years ago
10.7717/peerj.11368
Expression and gene regulation network of TYMS and BCL2L1 in colorectal cancer based on data miningCited by: 3
Author(s): Yanghua Jie, Xin Yang, Weidong Chen
Software Mentions: 1
Published: over 5 years ago
10.1038/s41598-018-34334-6
DNA methylation and associated gene expression in blood prior to lung cancer diagnosis in the Norwegian Women and Cancer cohortCited by: 28
Author(s): Torkjel M. Sandanger, Therese Haugdahl Nøst, Florence Guida, Charlotta Rylander, Gianluca Campanella, David C. Muller, Jenny van Dongen, Dorret I. Boomsma, Mattias Johansson, Paolo Víneis, Roel Vermeulen, Eiliv Lund, Marc Chadeau‐Hyam
Software Mentions: 1
Published: almost 8 years ago
10.1038/s41598-019-39582-8
Integrative Analysis Revealing Human Adipose-Specific Genes and Consolidating Obesity LociCited by: 17
Author(s): Jinsoo Ahn, Huiguang Wu, Kichoon Lee
Software Mentions: 1
Published: over 7 years ago
10.1186/s12885-021-08655-1
Characteristic of molecular subtypes in lung adenocarcinoma based on m6A RNA methylation modification and immune microenvironmentCited by: 13
Author(s): Hao Zhou, Miaosen Zheng, Muqi Shi, Jinjie Wang, Zhanghao Huang, Haijian Zhang, Youlang Zhou, Jiahai Shi
Software Mentions: 1
Published: about 5 years ago
10.18632/aging.103639
High expression of UNC5B enhances tumor proliferation, increases metastasis, and worsens prognosis in breast cancerCited by: 11
Author(s): Shuai Wu, Xinyue Guo, Jiaojiao Zhou, Xuan Zhu, Huihui Chen, Kun Zhang, Yingfeng Lu, Yiding Chen
Software Mentions: 1
Published: about 6 years ago
10.3389/fgene.2020.00206
CircRNA Expression Profiles and the Potential Role of CircZFP644 in Mice With Severe Acute Pancreatitis via Sponging miR-21-3pCited by: 11
Author(s): Yi Yang, Jiandong Ren, Qilin Huang, Jun Wu, Xiaohui Yuan, Wen Jiang, Yi Wen, Lijun Tang, Haiyan Sun
Software Mentions: 1
Published: over 6 years ago
10.1038/s41598-019-43924-x
FN1, SPARC, and SERPINE1 are highly expressed and significantly related to a poor prognosis of gastric adenocarcinoma revealed by microarray and bioinformaticsCited by: 98
Author(s): Li Li, Zhou Zhu, Yong Zhao, Qi Zhang, Xiaoting Wu, Bei Miao, Jiang Cao, Sujuan Fei
Software Mentions: 1
Published: over 7 years ago
10.7717/peerj.11698
LncRNA AC007255.1, an immune-related prognostic enhancer RNA in esophageal cancerCited by: 6
Author(s): Qingqing Wang, Xiaoyan Yu, Ningning Yang, Xu Lu, Youwen Zhou
Software Mentions: 1
Published: about 5 years ago
10.3390/biomedicines8100398
Abundance of Non-Polarized Lung Macrophages with Poor Phagocytic Function in Chronic Obstructive Pulmonary Disease (COPD)Cited by: 10
Author(s): Kentaro Akata, Kei Yamasaki, Fernando Sergio Leitão Filho, Chen Yang, Hiroto Takiguchi, Başak Şahin, Beth A. Whalen, Yang Cheng, Janice M. Leung, Don D. Sin, Stephanus Frederick Van Eeden
Software Mentions: 1
Published: almost 6 years ago
10.1155/2020/6971503
Network Pharmacology Approach to Uncover the Mechanism Governing the Effect of Simiao Powder on Knee OsteoarthritisCited by: 17
Author(s): Zhengquan Huang, Xianglin Shi, Xiaochen Li, Li Zhang, Peng Wu, Jun J. Mao, Runlin Xing, Nongshan Zhang, Peimin Wang
Software Mentions: 1
Published: almost 6 years ago
10.3389/fgene.2021.679150
Identification of a Genome Instability-Associated LncRNA Signature for Prognosis Prediction in Colon CancerCited by: 10
Author(s): Tao Yin, Dongyan Zhao, Shukun Yao
Software Mentions: 1
Published: over 5 years ago
10.7717/peerj.11438
Identification and expression pattern analysis of miRNAs in pectoral muscle during pigeon (Columba livia) developmentCited by: 0
Author(s): Xun Wang, Ping Yan, Siyuan Feng, Yi Luo, Jinqian Liang, Ling Zhao, Haifeng Liu, Qianzi Tang, Keren Long, Long Jin, Jideng Ma, Anan Jiang, Surong Shuai, Mingzhou Li
Software Mentions: 1
Published: about 5 years ago
10.1038/s41598-019-54401-w
Differential DNA methylation in high-grade serous ovarian cancer (HGSOC) is associated with tumor behaviorCited by: 21
Author(s): Henry Reyes Pineda, Eric J. Devor, Akshaya Warrier, A.M. Newtson, Jordan Mattson, Vincent Wagner, Gabrielle N. Duncan, Kimberly K. Leslie, Jesús González Bosquet
Software Mentions: 1
Published: almost 7 years ago
10.1155/2021/9213205
Circular RNA hsa_circ_0006117 Facilitates Pancreatic Cancer Progression by Regulating the miR-96-5p/KRAS/MAPK Signaling PathwayCited by: 4
Author(s): Tao Liu, Lei Zhou, Zhiwei He, Yankun Chen, Xueyi Jiang, Jian Xu, Jianxin Jiang
Software Mentions: 1
Published: about 5 years ago