Projects: bioconductor: clusterProfiler
https://packages.ecosyste.ms/registries/bioconductor.org/packages/clusterProfiler
A universal enrichment tool for interpreting omics data
2 versions
Latest release: almost 3 years ago
53 dependent packages
1,189,928 downloads total
Science Score: 75/100
Starting Score: 100 points
Bonuses:
Penalties:
-
-25
Non-science indicators
1 non-scientific terms found
Very Likely Science (75)
Papers Mentioning clusterProfiler 2,223
10.1111/jcmm.15230
Magnesium isoglycyrrhizinate prevents the nonalcoholic hepatic steatosis via regulating energy homeostasisCited by: 13
Author(s): Wenkai Jiang, Shiyu Xu, Huijie Guo, Li Lu, Jie Liu, Guangji Wang, Kun Hao
Software Mentions: 1
Published: over 6 years ago
10.22074/cellj.2020.6561
Gene Expression Microarray Data Meta-Analysis Identifies Candidate Genes and Molecular Mechanism Associated with Clear Cell Renal Cell Carcinoma.Cited by: 6
Author(s): Ying Wang, Haibin Wei, Lijian Song, Lu Xu, Jingyao Bao, Jiang Liu
Software Mentions: 1
Published: about 6 years ago
10.3389/fgene.2019.00908
Comprehensive RNA-Seq Data Analysis Identifies Key mRNAs and lncRNAs in Atrial FibrillationCited by: 6
Author(s): Dongmei Wu, Zhengkun Zhou, Shao‐Hua Fan, Zihui Zheng, Xin Wen, Xin‐Rui Han, Shan Wang, Yongjian Wang, Zi-Feng Zhang, Qun Shan, Meng‐Qiu Li, Bin Hu, Jun Lü, Guiquan Chen, Xi Hong, Yuxin Zheng
Software Mentions: 1
Published: about 7 years ago
10.18632/aging.103639
High expression of UNC5B enhances tumor proliferation, increases metastasis, and worsens prognosis in breast cancerCited by: 11
Author(s): Shuai Wu, Xinyue Guo, Jiaojiao Zhou, Xuan Zhu, Huihui Chen, Kun Zhang, Yingfeng Lu, Yiding Chen
Software Mentions: 1
Published: about 6 years ago
10.1097/MD.0000000000025452
Prognostic value of long noncoding RNA urothelial carcinoma-associated 1 in esophageal carcinomaCited by: 0
Author(s): Hong Zhang, Jie Tian, Jianming Tang, Tianhu Wang
Software Mentions: 1
Published: over 5 years ago
10.1186/s12859-019-2639-2
FunMappOne: a tool to hierarchically organize and visually navigate functional gene annotations in multiple experimentsCited by: 28
Author(s): Giovanni Scala, Angela Serra, Veer Singh Marwah, Laura Aliisa Saarimäki, Dario Greco
Software Mentions: 1
Published: over 7 years ago
10.31557/APJCP.2021.22.6.1799
Analysis of Nuclear Encoded Mitochondrial Gene Networks in Cervical CancerCited by: 8
Author(s): Cecile Meneur, Sangavi Eswaran, Divya Adiga, S. Sriharikrishnaa, Nadeem Khan G, Sandeep Mallya, Sanjiban Chakrabarty, Shama Prasada Kabekkodu
Software Mentions: 1
Published: over 5 years ago
10.1038/s41421-020-00194-6
Dysfunction of dimorphic sperm impairs male fertility in the silkwormCited by: 23
Author(s): Shuqing Chen, Yujia Liu, Yang Xu, Zulian Liu, Xun Luo, Jun Xu, Yongping Huang
Software Mentions: 1
Published: about 6 years ago
10.1038/s41421-020-0182-y
An in vivo strategy for knockdown of circular RNAsCited by: 24
Author(s): Nagarjuna Reddy Pamudurti, Inés Lucía Patop, Aishwarya Krishnamoorthy, Reut Ashwal-Fluss, Osnat Bartok, Sebastián Kadener
Software Mentions: 1
Published: about 6 years ago
10.1038/s41598-021-89778-0
Alternative splicing acts as an independent prognosticator in ovarian carcinomaCited by: 10
Author(s): Yu Ouyang, Kaide Xia, Yang Xue, Shichao Zhang, Li Wang, Shan Ren, Huanjiao Jenny Zhou, Yi Liu, Fuzhou Tang
Software Mentions: 1
Published: over 5 years ago
10.18632/aging.103912
Free Wanderer Powder regulates AMPA receptor homeostasis in chronic restraint stress-induced rat model of depression with liver-depression and spleen-deficiency syndromeCited by: 8
Author(s): Shengyan Xi, Guang-Xin Yue, Yueyun Liu, Yanan Wang, Ying-Kun Qiu, Zhigeng Li, Pei Ma, Tiegang Liu, You-Ming Jiang, Yuan Liang, Qun Liu, Jing Shi, Jiaxu Chen, Lifeng Yue
Software Mentions: 1
Published: almost 6 years ago
10.1111/jcmm.16307
Role of EIF4G1 network in non‐small cell lung cancers (NSCLC) cell survival and disease progressionCited by: 7
Author(s): Luis Del Valle, Lu Dai, Hui‐Yi Lin, Zhen Lin, Jungang Chen, Steven R. Post, Zhiqiang Qin
Software Mentions: 1
Published: over 5 years ago
10.3390/ani11051306
Bacterial Quality, Prevalence of Pathogens, and Molecular Characterization of Biofilm-Producing Staphylococcus aureus from Korean Dairy Farm EnvironmentsCited by: 2
Author(s): Sangdon Ryu, Minsoo Shin, Bohyun Yun, Woongji Lee, Hye‐Jin Choi, Min‐Kyoung Kang, Sangnam Oh, Younghoon Kim
Software Mentions: 1
Published: over 5 years ago
10.3390/cancers13092195
Enhanced Efficacy of Aurora Kinase Inhibitors in G2/M Checkpoint Deficient TP53 Mutant Uterine Carcinomas Is Linked to the Summation of LKB1–AKT–p53 InteractionsCited by: 0
Author(s): Katherine N. Lynch, Joyce F. Liu, Nikolas Kesten, Kin-Hoe Chow, Aniket Shetty, Rui-Yang He, Mosammat Faria Afreen, Liping Yuan, Ursula A. Matulonis, Whitfield B. Growdon, Michael G. Muto, Neil S. Horowitz, Colleen M. Feltmate, Michael J. Worley, Ross S. Berkowitz, Christopher P. Crum, Bo R. Rueda, Sarah J. Hill
Software Mentions: 1
Published: over 5 years ago
10.1186/s12918-018-0530-9
Comparisons of gene coexpression network modules in breast cancer and ovarian cancerCited by: 9
Author(s): Shuqin Zhang
Software Mentions: 1
Published: over 8 years ago
10.3389/fgene.2019.00305
Transcriptome Analysis Revealed a Highly Connected Gene Module Associated With Cirrhosis to Hepatocellular Carcinoma DevelopmentCited by: 25
Author(s): Shan Shan, Wei Chen, Jidong Jia
Software Mentions: 1
Published: over 7 years ago
10.1186/s12918-018-0657-8
Network-based logistic regression integration method for biomarker identificationCited by: 13
Author(s): Ke Zhang, Wei Geng, Shuqin Zhang
Software Mentions: 1
Published: almost 8 years ago
10.3390/ani11061639
Mediterranean Pine Vole, Microtus duodecimcostatus: A Paradigm of an Opportunistic BreederCited by: 5
Author(s): Miguel Lao-Pérez, Diaa Massoud, Francisca M. Real, Alicia Hurtado, Esperanza Ortega, Miguel Burgos, Rafael Jiménez, Francisco Barrionuevo
Software Mentions: 1
Published: over 5 years ago
10.1155/2020/6971503
Network Pharmacology Approach to Uncover the Mechanism Governing the Effect of Simiao Powder on Knee OsteoarthritisCited by: 17
Author(s): Zhengquan Huang, Xianglin Shi, Xiaochen Li, Li Zhang, Peng Wu, Jun J. Mao, Runlin Xing, Nongshan Zhang, Peimin Wang
Software Mentions: 1
Published: almost 6 years ago
10.3389/fgene.2020.521004
Identification and Validation of Potential Pathogenic Genes and Prognostic Markers in ESCC by Integrated Bioinformatics AnalysisCited by: 10
Author(s): Lu Tang, Yuqiao Chen, Ping Xiong, Yuan Zhou, Hong Jiang, Wei Guo, Wei Zhuang
Software Mentions: 1
Published: almost 6 years ago
10.1016/j.anireprosci.2020.106621
RNA-Seq analysis reveals functionally relevant coding and non-coding RNAs in crossbred bull spermatozoaCited by: 14
Author(s): M. Arul Prakash, A. Kumaresan, Manish Kumar Sinha, K. Elango, Tushar Kumar Mohanty, Tirtha Kumar Datta, Jane M. Morrell
Software Mentions: 1
Published: almost 6 years ago
10.1042/BSR20203565
Uncovering the mechanism of Ge-Gen-Qin-Lian decoction for treating ulcerative colitis based on network pharmacology and molecular docking verificationCited by: 19
Author(s): Lin Xu, Jiaqi Zhang, Yifan Wang, Zedan Zhang, Fengyun Wang, Xudong Tang
Software Mentions: 1
Published: over 5 years ago
10.1111/jcmm.16737
The lncRNA HOTAIR regulates autophagy and affects lipopolysaccharide‐induced acute lung injury through the miR‐17‐5p/ <i>ATG2/ATG7/ATG16</i> axisCited by: 5
Author(s): Yujun Li, Zhike Liang, He Huang, Xiaomei Huang, Zexun Mo, Jinwen Tan, Weihong Guo, Ziwen Zhao, Shuquan Wei
Software Mentions: 1
Published: over 5 years ago