Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: bioconductor: cghMCR
https://packages.ecosyste.ms/registries/bioconductor.org/packages/cghMCR
Find chromosome regions showing common gains/losses
1 version
Latest release: about 1 year ago
48,423 downloads total
Papers Mentioning cghMCR 15
10.1155/2009/201325
Analysis of Array-CGH Data Using the R and Bioconductor Software SuiteCited by: 8
Author(s): Winfried Hofmann, Anja Weigmann, Marcel Tauscher, Britta Skawran, Tim Focken, R Buurman, Luzie U. Wingen, Brigitte Schlegelberger, Doris Steinemann
Software Mentions: 11
Published: almost 16 years ago
10.1155/2012/876976
A High-Throughput Computational Framework for Identifying Significant Copy Number Aberrations from Array Comparative Genomic Hybridisation DataCited by: 1
Author(s): Ian Roberts, Stephanie A. Carter, Cinzia G. Scarpini, Konstantina Karagavriilidou, Jenny Barna, M. Calleja, Nicholas Coleman
Software Mentions: 7
Published: over 12 years ago
10.1186/1471-2164-13-591
Copynumber: Efficient algorithms for single- and multi-track copy number segmentationCited by: 229
Author(s): Gro Nilsen, Knut Liestøl, Peter Van Loo, Hans Kristian Moen Vollan, Marianne Brodtkorb Eide, Oscar M. Rueda, Suet Feung Chin, Roslin Russell, Lars Oliver Baumbusch, Carlos Caldas, Anne Lise Børresen-Dale, Ole Christian Lingjærde
Software Mentions: 4
Published: about 12 years ago
10.1038/srep18616
Developmental genes significantly afflicted by aberrant promoter methylation and somatic mutation predict overall survival of late-stage colorectal cancerCited by: 15
Author(s): Ning An, Xue Yang, Shujun Cheng, Guiqi Wang, Kaitai Zhang
Software Mentions: 4
Published: about 9 years ago
10.18632/oncotarget.16178
Survival differences of CIMP subtypes integrated with CNA information in human breast cancerCited by: 3
Author(s): Huihan Wang, Weili Yan, Shumei Zhang, Yue Gu, Yihan Wang, Yanjun Wei, Hongbo Liu, Fang Wang, Qiong Wu, Yan Zhang
Software Mentions: 3
Published: almost 8 years ago
10.1186/s12859-017-1705-x
An evaluation of copy number variation detection tools for cancer using whole exome sequencing dataCited by: 121
Author(s): Fatima Zare, Michelle Dow, Nicholas J. Monteleone, Abdelrahman Hosny, Sheida Nabavi
Software Mentions: 3
Published: over 7 years ago
10.1186/s12885-020-06719-2
Construction of an integrated human osteosarcoma database, HOsDb, based on literature mining, microarray analysis, and database retrievalCited by: 2
Author(s): Yun-Yu Sun, Lishan Wang, Changkuan Li, Rui Gu, Weidong Zang, Wei Song, Peng Xia
Software Mentions: 3
Published: over 4 years ago
10.1038/srep42060
Integrative analysis of copy number and transcriptional expression profiles in esophageal cancer to identify a novel driver gene for therapyCited by: 26
Author(s): Gaochao Dong, Qixing Mao, Decai Yu, Yi Zhang, Mantang Qiu, Gaoyue Dong, Qiang Chen, Wenjie Xia, Jie Wang, Lin Xu, Feng Jiang
Software Mentions: 3
Published: almost 8 years ago
10.1093/bioinformatics/btv298
Interactive analysis of large cancer copy number studies with Copy Number ExplorerCited by: 5
Author(s): Scott Newman
Software Mentions: 2
Published: over 9 years ago
10.1038/s41598-018-22126-x
A validation and extended description of the Lund taxonomy for urothelial carcinoma using the TCGA cohortCited by: 118
Author(s): Nour Al Dain Marzouka, Pontus Eriksson, Carlos Rovira, Fredrik Liedberg, Gottfrid Sjödahl, Mattias Höglund
Software Mentions: 2
Published: almost 7 years ago
10.1002/cam4.1888
Mutational signatures and the genomic landscape of betel quid chewing‐associated tongue carcinomaCited by: 5
Author(s): Weilong Zhang, Mu Wang, Qifeng Wu, Qing Zhu, Yuchen Jiao, Yiping Zhu, Baofeng Yang, Ning Song, Jianjun Yu, Hong Sun, Yi‐Xin Zeng
Software Mentions: 1
Published: almost 6 years ago
10.1186/s12859-018-2332-x
Noise cancellation using total variation for copy number variation detectionCited by: 6
Author(s): Fatima Zare, Abdelrahman Hosny, Sheida Nabavi
Software Mentions: 1
Published: about 6 years ago
10.1002/ijc.31916
ERBB2 and KRAS alterations mediate response to EGFR inhibitors in early stage gallbladder cancerCited by: 27
Author(s): Prajish Iyer, Shailesh V. Shrikhande, Malika Ranjan, Asim Joshi, Nilesh Gardi, Ratnam Prasad, Bhasker Dharavath, Rahul Thorat, Sameer Salunkhe, Bikram Sahoo, Pratik Chandrani, Hitesh Kore, Bhabani Mohanty, Vikram Chaudhari, Anuradha Choughule, Dhananjay Kawle, Pradip Chaudhari, Arvind Ingle, Shripad Banavali, Poonam Gera, Mukta Ramadwar, Kumar Prabhash, Savio George Barreto, Shilpee Dutt, Amit Dutt
Software Mentions: 1
Published: about 6 years ago
10.1371/journal.pone.0034262
Genetic Association Studies of Copy-Number Variation: Should Assignment of Copy Number States Precede Testing?Cited by: 13
Author(s): Patrick Breheny, Prabhakar Chalise, Anthony Batzler, Liewei Wang, Brooke L. Fridley
Software Mentions: 1
Published: over 12 years ago