Projects: bioconductor: atSNP
https://packages.ecosyste.ms/registries/bioconductor.org/packages/atSNP
Affinity test for identifying regulatory SNPs
1 version
Latest release: almost 2 years ago
4,907 downloads total
Enhanced Analysis
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Repository Activity:
Repository Owner:
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README Analysis:
Science Score: 100/100
Starting Score: 100 points
Bonuses:
-
+8
Academic maintainer emails
1 maintainers with academic email addresses -
+280
Educational commit emails
14 contributors with educational email addresses -
+10
Science terms in README
5 scientific terms found in README
Penalties:
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-10
No science terms in description
No scientific terms found in description
Very Likely Science (100)
Papers Mentioning atSNP 5
10.1186/s13059-021-02450-8
INFIMA leverages multi-omics model organism data to identify effector genes of human GWAS variantsCited by: 3
Author(s): Chenyang Dong, Shane P. Simonett, Sun‐Young Shin, Donnie S. Stapleton, Kathryn L. Schueler, Gary A. Churchill, Leina Lu, Huan Liu, Fulai Jin, Yan Li, Alan D. Attie, Mark P. Keller, Sündüz Keleş
Software Mentions: 7
Published: almost 4 years ago
10.1371/journal.pgen.1007785
Genetic variants influence on the placenta regulatory landscapeCited by: 48
Author(s): Fabien Delahaye, Catherine Do, Yu Kong, Remi Ashkar, Martha Salas, Benjamin Tycko, Ronald J. Wapner, Francine Hughes
Software Mentions: 4
Published: over 6 years ago
10.3390/biology10080790
agReg-SNPdb: A Database of Regulatory SNPs for Agricultural Animal SpeciesCited by: 5
Author(s): Selina Klees, Felix Heinrich, Armin O. Schmitt, Mehmet Gültaş
Software Mentions: 3
Published: almost 4 years ago
10.3389/fgene.2019.00282
BayesPI-BAR2: A New Python Package for Predicting Functional Non-coding Mutations in Cancer Patient CohortsCited by: 4
Author(s): Kirill Batmanov, Jan Delabie, Junbai Wang
Software Mentions: 1
Published: over 6 years ago
10.1186/s13059-020-02059-3
Allele-specific DNA methylation is increased in cancers and its dense mapping in normal plus neoplastic cells increases the yield of disease-associated regulatory SNPsCited by: 17
Author(s): Catherine Do, Emmanuel Dumont, Martha Salas, Angelica Castano, Huthayfa Mujahed, Leonel Maldonado, Arunjot Singh, Sonia DaSilva-Arnold, Govind Bhagat, Soren Lehman, Angela M. Christiano, Subha Madhavan, Péter L. Nagy, Peter H.R. Green, Rena Feinman, Cornelia L. Trimble, Nicholas P. Illsley, Karen Marder, Lawrence S. Honig, Catherine Monk, André Goy, Kar Fai Chow, Samuel Goldlust, George J. Kaptain, David S. Siegel, Benjamin Tycko
Software Mentions: 1
Published: about 5 years ago