bioconductor: arrayQualityMetrics | Projects

10.1371/journal.pone.0136473

Transcriptomic Analysis and Meta-Analysis of Human Granulosa and Cumulus Cells
Cited by: 21
Author(s): Tanja Burnik Papler, Eda Vrtačnik Bokal, Aleš Maver, Andreja Nataša Kopitar, Luca Lovrečić
Software Mentions: 3
Published: about 9 years ago

10.3390/cancers13020345

The Transcriptomic Landscape of Prostate Cancer Development and Progression: An Integrative Analysis
Cited by: 6
Author(s): Jacek Marzec, Helen Ross-Adams, S. Pirro, Jun Wang, Yanan Zhu, Xueying Mao, Emanuela Gadaleta, Amar Ahmad, Bernard V. North, Solène‐Florence Kammerer‐Jacquet, Elżbieta Stankiewicz, Sakunthala C. Kudahetti, Luis Beltrán, Guoping Ren, Daniel M. Berney, Yong‐Jie Lu, Claude Chelala
Software Mentions: 3
Published: almost 4 years ago

10.3389/fcell.2020.561907

DNA Methylation Associated With Diabetic Kidney Disease in Blood-Derived DNA
Cited by: 19
Author(s): Laura Smyth, Christopher Patterson, Elizabeth Swan, Alexander P. Maxwell, Amy Jayne McKnight
Software Mentions: 3
Published: about 4 years ago

10.3389/fimmu.2019.00600

1,25-Dihydroxyvitamin D3 Restrains CD4+ T Cell Priming Ability of CD11c+ Dendritic Cells by Upregulating Expression of CD31
Cited by: 30
Author(s): Louise Saul, Iris Mair, Alasdair Ivens, Pamela Brown, Kay Samuel, John Campbell, Daniel Soong, Nadine Kamenjarin, Richard J. Mellanby
Software Mentions: 3
Published: over 5 years ago

10.3389/fphys.2021.702864

The Marine Gastropod Crepidula fornicata Remains Resilient to Ocean Acidification Across Two Life History Stages
Cited by: 4
Author(s): Christopher L Reyes-Giler, Brooke E. Benson, Matthew Levy, Xüqing Chen, Anthony Pires, Jan A. Pechenik, Sarah W. Davies
Software Mentions: 3
Published: about 3 years ago

10.3389/fpls.2017.00053

Dissecting the Biochemical and Transcriptomic Effects of a Locally Applied Heat Treatment on Developing Cabernet Sauvignon Grape Berries
Cited by: 83
Author(s): Fatma Lecourieux, Christian Kappel, Philippe Pieri, Justine Charon, Jérémy Pillet, Ghislaine Hilbert, Christel Renaud, Éric Gomès, Serge Delrot, David Lecourieux
Software Mentions: 3
Published: almost 8 years ago

10.1007/s12079-018-0456-4

Oxygen drives hepatocyte differentiation and phenotype stability in liver cell lines
Cited by: 29
Author(s): Martien van Wenum, Aziza A. A. Adam, Vincent A. van der Mark, Jung-Chin Chang, Manon E. Wildenberg, Erik Hendriks, Aldo Jongejan, Perry D. Moerland, Thomas M. van Gulik, Ronald P.J. Oude Elferink, R. A. F. M. Chamuleau, Ruurdtje Hoekstra
Software Mentions: 3
Published: almost 7 years ago

10.1098/rsos.210113

Gene expression associated with disease resistance and long-term growth in a reef-building coral
Cited by: 9
Author(s): Emma R. Kelley, Robin S. Sleith, Mikhail V. Matz, Rachel M. Wright
Software Mentions: 3
Published: over 3 years ago

10.1038/sdata.2018.306

Transcriptomic profiles of tissues from rats treated with anticancer drug combinations
Cited by: 0
Author(s): Myrtle A. Davis, Enid M. Knight, Sandy Eldridge, Jianying Li, Pierre R. Bushel
Software Mentions: 3
Published: almost 6 years ago

10.1038/s41598-018-19627-0

In vitro RNA-seq-based toxicogenomics assessment shows reduced biological effect of tobacco heating products when compared to cigarette smoke
Cited by: 31
Author(s): Linsey E. Haswell, Sarah Corke, Ivan Verrastro, Andrew Baxter, Anisha Banerjee, Jason Adamson, Tomasz Jaunky, Christopher Proctor, Marianna Gaça, Emmanuel Minet
Software Mentions: 3
Published: almost 7 years ago

10.1038/s41598-019-42691-z

Ancestral Stress Alters Lifetime Mental Health Trajectories and Cortical Neuromorphology via Epigenetic Regulation
Cited by: 20
Author(s): Mirela Ambeskovic, Olena Mykolaivna Babenko, Yaroslav Ilnytskyy, Igor Kovalchuk, Bryan Kolb, Gerlinde A. S. Metz
Software Mentions: 3
Published: over 5 years ago

10.3390/ijms22020832

Common Transcriptional Program of Liver Fibrosis in Mouse Genetic Models and Humans
Cited by: 3
Author(s): Kaja Blagotinšek Cokan, Žiga Urlep, Miha Moškon, Miha Mraz, Xiang Yi Kong, Winnie Eskild, Damjana Rozman, Peter Juvan, Tadeja Režen
Software Mentions: 3
Published: almost 4 years ago

10.3390/ijms22094353

Effects of Whole-Body Adenylyl Cyclase 5 (Adcy5) Deficiency on Systemic Insulin Sensitivity and Adipose Tissue
Cited by: 5
Author(s): Sebastian Dommel, Anne Hoffmann, C Berger, Matthias Kern, Nora Klöting, Aimo Kannt, Matthias Blüher
Software Mentions: 3
Published: over 3 years ago

10.1186/1471-2164-14-632

An expression atlas of human primary cells: inference of gene function from coexpression networks
Cited by: 283
Author(s): Neil A. Mabbott, J Kenneth Baillie, Helen Brown, Tom C. Freeman, David Hume
Software Mentions: 2
Published: almost 12 years ago

10.1186/1471-2164-13-190

Comparison of low and high dose ionising radiation using topological analysis of gene coexpression networks
Cited by: 19
Author(s): Monika Ray, Reem Yunis, Xiucui Chen, David M. Rocke
Software Mentions: 2
Published: over 12 years ago

10.1038/s41598-020-77636-4

Investigation of MicroRNA and transcription factor mediated regulatory network for silicosis using systems biology approach
Cited by: 9
Author(s): Jyoti Kant Choudhari, Mukesh Verma, Jyotsna Choubey, Biju Prava Sahariah
Software Mentions: 2
Published: almost 4 years ago

10.1038/s41598-021-82802-3

Transgenic inhibition of interleukin-6 trans-signaling does not prevent skeletal pathologies in mucolipidosis type II mice
Cited by: 1
Author(s): Lena Marie Westermann, Anke Baranowsky, Giorgia Di Lorenzo, Tatyana Danyukova, Jamie Soul, Jean-Marc Schwartz, Gretl Hendrickx, Michael Amling, Stefan Rose‐John, Christoph Garbers, Thorsten Schinke, Sandra Pohl
Software Mentions: 2
Published: almost 4 years ago

10.1186/s12864-021-07778-w

Genome-wide expression and network analyses of mutants in key brassinosteroid signaling genes
Cited by: 4
Author(s): Razgar Seyed Rahmani, Tao Shi, Dongzhi Zhang, Xiaoping Gou, Jing Yi, Giles Miclotte, Kathleen Marchal, Jia Li
Software Mentions: 2
Published: over 3 years ago

10.1186/s12864-016-2469-9

Nur77-deficiency in bone marrow-derived macrophages modulates inflammatory responses, extracellular matrix homeostasis, phagocytosis and tolerance
Cited by: 30
Author(s): Anouk A.J. Hamers, Carmen Argmann, Perry D. Moerland, Duco S. Koenis, Goran Marinković, Milka Sokolović, Alex F. de Vos, Carlie J.M. de Vries, Claudia M. van Tiel
Software Mentions: 2
Published: over 8 years ago

10.3389/fgene.2020.00765

Epigenetic Regulator miRNA Pattern Differences Among SARS-CoV, SARS-CoV-2, and SARS-CoV-2 World-Wide Isolates Delineated the Mystery Behind the Epic Pathogenicity and Distinct Clinical Characteristics of Pandemic COVID-19
Cited by: 129
Author(s): A. A. Khan, Md. Rabi Us Sany, Abul B.M.M.K. Islam, Abul B.M.M.K. Islam
Software Mentions: 2
Published: over 4 years ago

10.1186/1471-2164-14-220

Pig immune response to general stimulus and to porcine reproductive and respiratory syndrome virus infection: a meta-analysis approach
Cited by: 30
Author(s): Bouabid Badaoui, Christopher K. Tuggle, Zhi-Liang Hu, James M. Reecy, Tahar Aït-Ali, Anna Anselmo, Sara Botti
Software Mentions: 2
Published: almost 12 years ago

10.1089/ten.tec.2016.0329

Spheroid Coculture of Hematopoietic Stem/Progenitor Cells and Monolayer Expanded Mesenchymal Stem/Stromal Cells in Polydimethylsiloxane Microwells Modestly Improves<i>In Vitro</i>Hematopoietic Stem/Progenitor Cell Expansion
Cited by: 42
Author(s): Kathryn Futrega, Kerry Atkinson, William B. Lott, Michael Doran
Software Mentions: 2
Published: over 7 years ago

10.1039/c7tx00152e

Comparative effects of a candidate modified-risk tobacco product Aerosol and cigarette smoke on human organotypic small airway cultures: a systems toxicology approach
Cited by: 18
Author(s): Anita Iskandar, Yannick Martinez, Florian Martin, Walter K. Schlage, Patrice Leroy, Alain Sewer, Laura Ortega Torres, Shoaib Majeed, Céline Merg, Keyur Trivedi, Emmanuel Guedj, Stefan Frentzel, Carole Mathis, Nikolai V. Ivanov, Manuel C. Peitsch, Julia Hoeng
Software Mentions: 2
Published: almost 8 years ago

10.1186/s12864-021-07814-9

Transcriptional responses in jejunum of two layer chicken strains following variations in dietary calcium and phosphorus levels
Cited by: 10
Author(s): Henry Reyer, Michael Oster, Siriluck Ponsuksili, Nares Trakooljul, Adewunmi Omolade Omotoso, Muhammad Arsalan Iqbal, Eduard Muráni, Vera Sommerfeld, M. Rodehutscord, Klaus Wimmers
Software Mentions: 2
Published: over 3 years ago

10.1002/path.4864

Derivation of marker gene signatures from human skin and their use in the interpretation of the transcriptional changes associated with dermatological disorders
Cited by: 22
Author(s): Barbara Shih, Ajit J. Nirmal, Denis J. Headon, Arne N. Akbar, Neil A. Mabbott, Tom C. Freeman
Software Mentions: 2
Published: over 7 years ago

10.1002/mnfr.201600079

Gene promoter DNA methylation patterns have a limited role in orchestrating transcriptional changes in the fetal liver in response to maternal folate depletion during pregnancy
Cited by: 13
Author(s): Jill A. McKay, Michiel E. Adriaens, Chris T. Evelo, Dianne Ford, John C. Mathers
Software Mentions: 2
Published: over 8 years ago

10.1186/s12872-021-02108-0

Exploration and validation of hub genes and pathways in the progression of hypoplastic left heart syndrome via weighted gene co-expression network analysis
Cited by: 2
Author(s): Xuelan Liu, Honglei Shang, Bin Li, Lei Zhao, Ying Huang, Kaiyuan Wu, Manman Hu, Taibing Fan
Software Mentions: 2
Published: over 3 years ago

10.7554/eLife.00070

The activity-dependent histone variant H2BE modulates the life span of olfactory neurons
Cited by: 95
Author(s): Stephen Santoro, Catherine Dulac
Software Mentions: 2
Published: almost 12 years ago

10.1186/s12896-014-0091-y

Comparison of intracellular and secretion-based strategies for production of human α-galactosidase A in the filamentous fungus Trichoderma reesei
Cited by: 11
Author(s): Wesley Smith, Jussi Jäntti, Merja Oja, Markku Saloheimo
Software Mentions: 2
Published: about 10 years ago

10.1186/1741-7007-10-90

A gene expression atlas of the domestic pig
Cited by: 145
Author(s): Tom C. Freeman, Alasdair Ivens, J Kenneth Baillie, Dario Beraldi, Mark W. Barnett, David A. Dorward, Alison Downing, Lynsey Fairbairn, Ronan Kapétanovic, Sobia Raza, Andru Tomoiu, Ramiro Alberio, Chunlei Wu, Andrew I. Su, Kim M. Summers, Christopher K. Tuggle, Alan Archibald, David Hume
Software Mentions: 2
Published: about 12 years ago

10.1371/journal.pone.0095176

Systematic Identification of Cell-Wall Related Genes in Populus Based on Analysis of Functional Modules in Co-Expression Network
Cited by: 23
Author(s): Bin Cai, Cheng-Hui Li, Jian Huang
Software Mentions: 2
Published: over 10 years ago

10.3389/fgene.2018.00457

Meta-Analysis Identification of Highly Robust and Differential Immune-Metabolic Signatures of Systemic Host Response to Acute and Latent Tuberculosis in Children and Adults
Cited by: 14
Author(s): Saikou Y. Bah, Thorsten Forster, Paul Dickinson, Beate Kampmann, Peter Ghazal
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pone.0203713

MicroRNAs and histone deacetylase inhibition-mediated protection against inflammatory β-cell damage
Cited by: 16
Author(s): Anna L. Vestergaard, Claus Heiner Bang-Berthelsen, Tina Fløyel, Jonathan Stahl, Lisa Christen, Farzaneh Taheri Sotudeh, Peter de Hemmer Horskjær, Klaus Stensgaard Frederiksen, Frida Greek Kofod, Christine Bruun, Lukas Adrian Berchtold, Joachim Størling, Romano Regazzi, Simranjeet Kaur, Flemming Pociot, Thomas Mandrup‐Poulsen
Software Mentions: 2
Published: about 6 years ago

10.1186/1475-2859-11-34

The metabolic response of P. putida KT2442 producing high levels of polyhydroxyalkanoate under single- and multiple-nutrient-limited growth: Highlights from a multi-level omics approach
Cited by: 110
Author(s): Ignacio Poblete‐Castro, Isabel F. Escapa, Christian Jäger, Jacek Puchałka, Carolyn M.C. Lam, Dietmar Schomburg, María Auxiliadora Prieto, Vítor A. P. Martins dos Santos
Software Mentions: 2
Published: almost 13 years ago

10.1002/cam4.610

Expression of aurora kinase A correlates with the Wnt‐modulator <scp>RACGAP</scp> 1 in gastric cancer
Cited by: 15
Author(s): Jan Bornschein, Jessica Nielitz, Ignat Drozdov, Michael Selgrad, Thomas Wex, Doerthe Jechorek, Alexander Link, Michael Vieth, Peter Malfertheiner
Software Mentions: 2
Published: almost 9 years ago

10.3390/ijms21165762

Decreased Expression of ZNF554 in Gliomas is Associated with the Activation of Tumor Pathways and Shorter Patient Survival
Cited by: 5
Author(s): Andrea Balogh, Lilla Reiniger, Szabolcs Hetey, Péter Király, Eszter Tóth, Katalin Karászi, Kata Juhász, Zsolt Gelencser, Ágnes Zvara, András Szilágyi, László G. Puskás, János Matkó, Z. Papp, Ilona Kovalszky, Csaba Juhász, Nándor Gábor Than
Software Mentions: 2
Published: over 4 years ago

10.1038/cddis.2015.48

KLF17 empowers TGF-β/Smad signaling by targeting Smad3-dependent pathway to suppress tumor growth and metastasis during cancer progression
Cited by: 44
Author(s): Amjad Ali, P Zhang, Y Liangfang, S Wenshe, H Wang, Lin Xiao, Yaozhang Dai, Feng Xh, Robb E. Moses, D Wang, Li X, Jianru Xiao
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0257232

PIIKA 2.5: Enhanced quality control of peptide microarrays for kinome analysis
Cited by: 1
Author(s): Connor Denomy, Conor Lazarou, Daniel J. Hogan, Antonio Facciuolo, Erin Scruten, Anthony Kusalik, Scott Napper
Software Mentions: 2
Published: about 3 years ago

10.5936/csbj.201304004

A NETWORK VIEW ON PARKINSON'S DISEASE
Cited by: 43
Author(s): S. Chandrasekaran, Danail Bonchev
Software Mentions: 2
Published: over 11 years ago

10.1186/s13054-017-1743-9

Transcriptome modulation by hydrocortisone in severe burn shock: ancillary analysis of a prospective randomized trial
Cited by: 10
Author(s): Jonathan Plassais, Fabienne Venet, Marie-Angélique Cazalis, Diane Le Quang, Alexandre Pachot, Guillaume Monneret, S. Tissot, Julien Textoris
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0062910

Integrating Murine Gene Expression Studies to Understand Obstructive Lung Disease Due to Chronic Inhaled Endotoxin
Cited by: 1
Author(s): Peggy S. Lai, Oliver Hofmann, Rebecca M. Baron, Manuela Cernadas, Quanxin Meng, Herbert S. Bresler, David M. Brass, Ivana V. Yang, David A. Schwartz, David C. Christiani, Winston Hide
Software Mentions: 2
Published: over 11 years ago

10.1016/j.dib.2017.07.018

Whole transcriptome data of primary human NK cells under hypoxia and interleukin 15 priming: A 2×2 factorial design experiment
Cited by: 3
Author(s): Ana Sofia Figueiredo, Doreen Killian, Jutta Schulte, Carsten Sticht, Holger A. Lindner
Software Mentions: 2
Published: about 7 years ago

10.1371/journal.pone.0031428

p53-Dependent Transcriptional Responses to Interleukin-3 Signaling
Cited by: 7
Author(s): Anissa Jabbour, Lavinia Gordon, Carmel Patricia Daunt, Benjamin D Green, Chung Hoow Kok, Richard J. D’Andrea, Paul G. Ekert
Software Mentions: 2
Published: almost 13 years ago

10.1371/journal.ppat.1005936

Combined Activity of DCL2 and DCL3 Is Crucial in the Defense against Potato Spindle Tuber Viroid
Cited by: 49
Author(s): Κωνσταντίνα Κατσαρού, Eleni Mavrothalassiti, Wannes Dermauw, Thomas Van Leeuwen, Kriton Kalantidis
Software Mentions: 2
Published: about 8 years ago

10.1289/ehp.1104474

Prenatal Lead Levels, Plasma Amyloid β Levels, and Gene Expression in Young Adulthood
Cited by: 53
Author(s): Maitreyi Mazumdar, Weiming Xia, Oliver Hofmann, Matthew Gregas, Shannan Ho Sui, Winston Hide, Ting Yang, Herbert L. Needleman, David C. Bellinger
Software Mentions: 2
Published: over 12 years ago

10.18632/oncotarget.11233

Heterogeneity in mechanisms of emergent resistance in pediatric T-cell acute lymphoblastic leukemia
Cited by: 16
Author(s): Babasaheb D. Yadav, A. Lacey Samuels, Julia E. Wells, Rosemary Sutton, Nicola C. Venn, Katerina Bendak, Denise Anderson, Glenn M. Marshall, Catherine Cole, Alex H. Beesley, Ursula R. Kees, Richard B. Lock
Software Mentions: 2
Published: over 8 years ago

10.1155/2014/141396

Effects of Stress and MDMA on Hippocampal Gene Expression
Cited by: 13
Author(s): Georg F. Weber, Bethann N. Johnson, Bryan K. Yamamoto, Gary A. Gudelsky
Software Mentions: 2
Published: almost 11 years ago

10.18632/aging.102848

Ancestral stress programs sex-specific biological aging trajectories and non-communicable disease risk
Cited by: 11
Author(s): Mirela Ambeskovic, Yaroslav Ilnytskyy, Douglas Kiss, Cheryl L. Currie, Tony Montina, Igor Kovalchuk, Gerlinde A. S. Metz
Software Mentions: 2
Published: over 4 years ago

10.1186/1752-0509-7-44

Maximizing capture of gene co-expression relationships through pre-clustering of input expression samples: an Arabidopsis case study
Cited by: 23
Author(s): F. Alex Feltus, Stephen P. Ficklin, Scott M. Gibson, Melinda Smith
Software Mentions: 2
Published: almost 12 years ago

10.1371/journal.pntd.0007908

Helminth-induced Th2 cell dysfunction is distinct from exhaustion and is maintained in the absence of antigen
Cited by: 21
Author(s): Johanna A. Knipper, Alasdair Ivens, Matthew D. Taylor
Software Mentions: 2
Published: almost 5 years ago

10.1371/journal.pgen.1002794

Gene Expression Profiles in Parkinson Disease Prefrontal Cortex Implicate FOXO1 and Genes under Its Transcriptional Regulation
Cited by: 70
Author(s): Alexandra Dumitriu, Jeanne C. Latourelle, Tiffany C. Hadzi, Nathan Pankratz, Dan Garza, John P. Miller, Jeffery M. Vance, Tatiana Foroud, Thomas G. Beach, Richard H. Myers
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pone.0097640

Cross-Platform Toxicogenomics for the Prediction of Non-Genotoxic Hepatocarcinogenesis in Rat
Cited by: 43
Author(s): Michael Roemer, Johannes Eichner, Ute Metzger, Markus F. Templin, Simon Plummer, Heidrun Ellinger‐Ziegelbauer, Andreas Zell
Software Mentions: 2
Published: over 10 years ago

10.3389/fimmu.2017.01146

Genomic Programming of Human Neonatal Dendritic Cells in Congenital Systemic and In Vitro Cytomegalovirus Infection Reveal Plastic and Robust Immune Pathway Biology Responses
Cited by: 9
Author(s): Widad Dantoft, Pablo Martínez-Vicente, James Jafali, Lara Pérez-Martínez, Kimberly Martin, Konstantinos Kotzamanis, Marie Craigon, Manfred Auer, N. J. Young, Paul Walsh, Arnaud Marchant, Ana Angulo, Thorsten Forster, Peter Ghazal
Software Mentions: 2
Published: about 7 years ago

10.1038/s41598-018-36328-w

Systems Biology Approach to Identify Novel Genomic Determinants for Pancreatic Cancer Pathogenesis
Cited by: 6
Author(s): Indu Khatri, Koelina Ganguly, Sunandini Sharma, Joseph Carmicheal, Sukwinder Kaur, Surinder K. Batra, Manoj Bhasin
Software Mentions: 2
Published: almost 6 years ago

10.1186/s12864-017-3625-6

Perturbation of microbiota in one-day old broiler chickens with antibiotic for 24 hours negatively affects intestinal immune development
Cited by: 74
Author(s): Dirkjan Schokker, A.J.M. Jansman, Gosse Veninga, N. de Bruin, S.A. Vastenhouw, F.M. de Bree, Alex Bossers, Johanna M.J. Rebel, M.A. Smits
Software Mentions: 2
Published: over 7 years ago

10.18632/oncotarget.27120

Transcriptome analysis of Sézary syndrome and lymphocytic-variant hypereosinophilic syndrome T cells reveals common and divergent genes
Cited by: 7
Author(s): Andrea Moerman-Herzog, Daniel Acheampong, A. Brooks, S. Blair, Ping-Ching Hsu, Henry K. Wong
Software Mentions: 2
Published: over 5 years ago

10.1186/1471-2105-12-249

Deregulation upon DNA damage revealed by joint analysis of context-specific perturbation data
Cited by: 2
Author(s): Ewa Szczurek, Florian Markowetz, Irit Gat‐Viks, Przemysław Biecek, Jerzy Tiuryn, Martin Vingron
Software Mentions: 2
Published: over 13 years ago

10.18632/oncotarget.26306

A combined microfluidic-transcriptomic approach to characterize the extravasation potential of cancer cells
Cited by: 22
Author(s): Simone Bersini, Agnès Miermont, Andrea Pavesi, Roger D. Kamm, Jean Paul Thiery, Matteo Moretti, Giulia Adriani
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0028150

Modes of Gene Duplication Contribute Differently to Genetic Novelty and Redundancy, but Show Parallels across Divergent Angiosperms
Cited by: 131
Author(s): Yupeng Wang, Xiyin Wang, Haibao Tang, Xu Tan, Stephen P. Ficklin, F. Alex Feltus, Andrew H. Paterson
Software Mentions: 1
Published: almost 13 years ago

10.3389/fimmu.2018.02983

Effects of Epithelial IL-13Rα2 Expression in Inflammatory Bowel Disease
Cited by: 15
Author(s): Bram Verstockt, Clémentine Perrier, Gert De Hertogh, Jonathan Cremer, Brecht Creyns, Gert Van Assche, Marc Ferrante, Jan Ceuppens, Séverine Vermeire, Christine Breynaert
Software Mentions: 1
Published: almost 6 years ago

10.3389/fimmu.2014.00536

Comparative Functional Genomics and the Bovine Macrophage Response to Strains of the Mycobacterium Genus
Cited by: 23
Author(s): Kévin Rue-Albrecht, David A. Magee, Kate E. Killick, Nicolas C. Nalpas, Stephen V. Gordon, David E. MacHugh
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0123861

Genomic and Clinical Effects Associated with a Relaxation Response Mind-Body Intervention in Patients with Irritable Bowel Syndrome and Inflammatory Bowel Disease
Cited by: 61
Author(s): Braden Kuo, Manoj Bhasin, Jolene Jacquart, Matthew A. Scult, Lauren E. Slipp, Eric Riklin, Veronique Lepoutre, Nicole Comosa, Beth-Ann Norton, Allison Dassatti, Jessica Rosenblum, Andrea H. Thurler, Brian Surjanhata, Nicole Hasheminejad, Leslee Kagan, Ellen Slawsby, Sowmya R. Rao, Eric A. Macklin, Gregory L. Fricchione, Herbert Benson, Towia A. Libermann, Joshua R. Korzenik, John W. Denninger
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0034899

Very Small Embryonic-Like Stem Cells Purified from Umbilical Cord Blood Lack Stem Cell Characteristics
Cited by: 52
Author(s): Ralitza Danova-Alt, Andreas Heider, Dietmar Egger, Michael Cross, Rüdiger Alt
Software Mentions: 1
Published: over 12 years ago

10.3389/fnins.2020.596105

Meta-Analysis of Differentially Expressed Genes in the Substantia Nigra in Parkinson’s Disease Supports Phenotype-Specific Transcriptome Changes
Cited by: 9
Author(s): Duong My Phung, Jun Young Lee, Sangkyoon Hong, Young Eun Kim, Jeehee Yoon, Yun Joong Kim
Software Mentions: 1
Published: almost 4 years ago

10.18632/aging.202316

Dietary and environmental factors have opposite AhR-dependent effects on C. elegans healthspan
Cited by: 10
Author(s): Vanessa Brinkmann, Alfonso Schiavi, Anjumara Shaik, Daniel Rüdiger Puchta, Natascia Ventura
Software Mentions: 1
Published: almost 4 years ago

10.3389/fpls.2013.00129

Conserved Non-Coding Sequences are Associated with Rates of mRNA Decay in Arabidopsis
Cited by: 2
Author(s): Jacob B. Spangler, F. Alex Feltus
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pcbi.1004048

Developing a Molecular Roadmap of Drug-Food Interactions
Cited by: 26
Author(s): Kasper Jensen, Yueqiong Ni, Gianni Panagiotou, Irene Kouskoumvekaki
Software Mentions: 1
Published: almost 10 years ago

10.1002/1878-0261.12568

Metabolomic, transcriptomic and genetic integrative analysis reveals important roles of adenosine diphosphate in haemostasis and platelet activation in non‐small‐cell lung cancer
Cited by: 22
Author(s): Long Hoàng, C. Domingo-Sabugo, E. Starren, Saffron A.G. Willis‐Owen, Deborah Morris-Rosendahl, Andrew G. Nicholson, William Cookson, Miriam F. Moffatt
Software Mentions: 1
Published: about 5 years ago

10.1093/molehr/gax038

Immune cell and transcriptomic analysis of the human decidua in term and preterm parturition
Cited by: 46
Author(s): Sara F. Rinaldi, Sofia Makieva, Philippa T. K. Saunders, Adriano G. Rossi, Jane E. Norman
Software Mentions: 1
Published: over 7 years ago

10.1093/intimm/dxv020

Modulation of dendritic cell alternative activation and function by the vitamin A metabolite retinoic acid
Cited by: 8
Author(s): Lucy Jones, Peter C. Cook, Alasdair Ivens, Graham D. Thomas, Alexander Phythian‐Adams, Judith E. Allen, Andrew S. MacDonald
Software Mentions: 1
Published: over 9 years ago

10.1089/acm.2017.0053

Specific Transcriptome Changes Associated with Blood Pressure Reduction in Hypertensive Patients After Relaxation Response Training
Cited by: 15
Author(s): Manoj Bhasin, John W. Denninger, Jeff C. Huffman, Marie Joseph, Halsey Niles, Emma Chad‐Friedman, Roberta E. Goldman, Beverly Buczynski-Kelley, Barbara A. Mahoney, Gregory L. Fricchione, Jeffery A. Dusek, Herbert Benson, Randall M. Zusman, Towia A. Libermann
Software Mentions: 1
Published: over 6 years ago

10.1186/s13048-014-0110-6

The transcriptome of corona radiata cells from individual MІІ oocytes that after ICSI developed to embryos selected for transfer: PCOS women compared to healthy women
Cited by: 13
Author(s): Marie Louise Muff Wissing, Si Brask Sonne, David Westergaard, Kho do Nguyen, Kirstine Belling, Thomas Høst, Anne Lis Mikkelsen
Software Mentions: 1
Published: almost 10 years ago

10.1186/s13058-017-0901-y

Alcohol consumption and breast tumor gene expression
Cited by: 22
Author(s): Jun Wang, Yujing J. Heng, A. Heather Eliassen, Rulla M. Tamimi, Aditi Hazra, Vincent J. Carey, Christine B. Ambrosone, Victor Piana de Andrade, Adam Brufsky, Fergus J. Couch, Tari A. King, Francesmary Modugno, Celine M. Vachon, David J. Hunter, Andrew H. Beck, Susan E. Hankinson
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-017-00852-y

Reduced biological effect of e-cigarette aerosol compared to cigarette smoke evaluated in vitro using normalized nicotine dose and RNA-seq-based toxicogenomics
Cited by: 49
Author(s): Linsey E. Haswell, Andrew Baxter, Anisha Banerjee, Ivan Verrastro, Jessica Mushonganono, Jason Adamson, David Thorne, Marianna Gaça, Emmanuel Minet
Software Mentions: 1
Published: over 7 years ago

10.1186/s13104-017-2447-6

RNA isolation from precision-cut lung slices (PCLS) from different species
Cited by: 24
Author(s): Monika Niehof, Tobias Hildebrandt, Olga Danov, Kirsten Arndt, Jeannette Koschmann, Franziska Dahlmann, Tanja Hansen, Katherina Sewald
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0080751

Novel Factors in the Pathogenesis of Psoriasis and Potential Drug Candidates Are Found with Systems Biology Approach
Cited by: 26
Author(s): Máté Manczinger, Lajos Kemény
Software Mentions: 1
Published: almost 11 years ago

10.1186/s12870-014-0273-8

Shoot chloride exclusion and salt tolerance in grapevine is associated with differential ion transporter expression in roots
Cited by: 77
Author(s): Sam W. Henderson, Ute Baumann, Deidre H. Blackmore, Amanda R. Walker, Rob R. Walker, Matthew Gilliham
Software Mentions: 1
Published: about 10 years ago

10.1038/s41598-019-46652-4

Gene Expression Analyses in Non Muscle Invasive Bladder Cancer Reveals a Role for Alternative Splicing and Tp53 Status
Cited by: 13
Author(s): Marta Dueñas, Andrés Pérez‐Figueroa, Carla Oliveíra, Cristian Suárez-Cabrera, Abel Sousa, Patrícia Oliveira, Felipe Villacampa, Jesús M. Paramio, Mónica Martínez‐Fernández
Software Mentions: 1
Published: over 5 years ago

10.1186/1471-2164-11-144

Whole genome analysis of p38 SAPK-mediated gene expression upon stress
Cited by: 61
Author(s): Isabel Ferreiro, Manel Joaquin, Abul B.M.M.K. Islam, Gonzalo Gómez‐López, Montserrat Barragán, Luis Lombardía, Orlando Domı́nguez, David G. Pisano, Núria López‐Bigas, Àngel R. Nebreda, Francesc Posas
Software Mentions: 1
Published: over 14 years ago

10.1186/1471-2164-15-1137

Investigation of protein secretion and secretion stress in Ashbya gossypii
Cited by: 8
Author(s): Tatiana Quinta Aguiar, Orquídea Ribeiro, Mikko Arvas, Marilyn G. Wiebe, Merja Penttilä, Lucı́lia Domingues
Software Mentions: 1
Published: almost 10 years ago

10.1084/jem.20161087

Fumarate hydratase is a critical metabolic regulator of hematopoietic stem cell functions
Cited by: 56
Author(s): Amélie V. Guitart, Theano I. Panagopoulou, Arnaud Villacreces, Milica Vukovic, Catarina Sepúlveda, Lewis Allen, Roderick N. Carter, Louie N. van de Lagemaat, Marcos Morgan, Peter Giles, Zuzanna Sas, Marta Vilà González, Hannah Lawson, J Paris, Joy Edwards-Hicks, Katrin Schaak, Chithra Subramani, Deniz Gezer, Alejandro Armesilla-Diaz, Jimi Wills, Aaron Easterbrook, David Coman, Chi Wai Eric So, Dónal O’Carroll, Douglas Vernimmen, Neil P. Rodrigues, Patrick J. Pollard, Nicholas M. Morton, Andrew J. Finch, Kamil R. Kranc
Software Mentions: 1
Published: almost 8 years ago

10.3390/ijms20020390

HSFA2 Functions in the Physiological Adaptation of Undifferentiated Plant Cells to Spaceflight
Cited by: 13
Author(s): Agata K. Zupanska, Collin LeFrois, Robert J. Ferl, Anna‐Lisa Paul
Software Mentions: 1
Published: almost 6 years ago

10.3390/ijms20092290

AKIRIN1: A Potential New Reference Gene in Human Natural Killer Cells and Granulocytes in Sepsis
Cited by: 6
Author(s): Anna Coulibaly, Sonia Y. Velásquez, Carsten Sticht, Ana Sofia Figueiredo, Bianca S Himmelhan, Jutta Schulte, Timo Sturm, Franz-Simon Centner, Jochen J Schöttler, Manfred Thiel, Holger A. Lindner
Software Mentions: 1
Published: over 5 years ago

10.1186/1471-2105-13-S4-S22

Improving biomarker list stability by integration of biological knowledge in the learning process
Cited by: 13
Author(s): Tiziana Sanavia, Fabio Aiolli, Giovanni Da San Martino, Andrea Bisognin, Barbara Di Camillo
Software Mentions: 1
Published: over 12 years ago

10.1186/s12859-020-03692-2

Robust edge-based biomarker discovery improves prediction of breast cancer metastasis
Cited by: 3
Author(s): Nahim Adnan, Chengwei Lei, Jianhua Ruan
Software Mentions: 1
Published: about 4 years ago

10.1371/journal.pone.0072324

MiR-155 Has a Protective Role in the Development of Non-Alcoholic Hepatosteatosis in Mice
Cited by: 104
Author(s): Ashley M. Miller, Derek S. Gilchrist, Jagtar Singh Nijjar, Elisa Araldi, Cristina M. Ramírez, Christopher A. Lavery, Carlos Fernández‐Hernando, Iain B. McInnes, Mariola Kurowska‐Stolarska
Software Mentions: 1
Published: over 11 years ago

10.1038/cdd.2016.132

Modulation of macrophage antitumor potential by apoptotic lymphoma cells
Cited by: 47
Author(s): Jorine J. L. P. Voss, Catriona A. Ford, С. А. Петрова, Lynsey Melville, Mary Paterson, John D. Pound, Pamela J. Holland, Bruno Giotti, Tom C. Freeman, Christopher D. Gregory
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0046199

Evaluation of Parkinson Disease Risk Variants as Expression-QTLs
Cited by: 37
Author(s): Jeanne C. Latourelle, Alexandra Dumitriu, Tiffany C. Hadzi, Thomas G. Beach, Richard H. Myers
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0056389

Transcriptional Patterns in Peritoneal Tissue of Encapsulating Peritoneal Sclerosis, a Complication of Chronic Peritoneal Dialysis
Cited by: 16
Author(s): Fabian R. Reimold, Niko Braun, Zsuzsanna K. Zsengellér, Isaac E. Stillman, S. Ananth Karumanchi, Hakan R. Toka, Joerg Latus, Péter Fritz, Dagmar Biegger, Stephan Segerer, Mark Dominik Alscher, Manoj Bhasin, Seth L. Alper
Software Mentions: 1
Published: almost 12 years ago

Projects: bioconductor: arrayQualityMetrics

Papers Mentioning arrayQualityMetrics 190