bioconductor: aCGH | Projects | Ecosyste.ms: Papers

10.1155/2009/201325

Analysis of Array-CGH Data Using the R and Bioconductor Software Suite
Cited by: 8
Author(s): Winfried Hofmann, Anja Weigmann, Marcel Tauscher, Britta Skawran, Tim Focken, R Buurman, Luzie U. Wingen, Brigitte Schlegelberger, Doris Steinemann
Software Mentions: 11
Published: over 15 years ago

10.1155/2014/910390

<i>biomvRhsmm:</i>Genomic Segmentation with Hidden Semi-Markov Model
Cited by: 4
Author(s): Yang Du, Eduard Muráni, Siriluck Ponsuksili, Klaus Wimmers
Software Mentions: 10
Published: over 10 years ago

10.1371/journal.pone.0000737

ADaCGH: A Parallelized Web-Based Application and R Package for the Analysis of aCGH Data
Cited by: 26
Author(s): Ramón Díaz‐Uriarte, Oscar M. Rueda
Software Mentions: 8
Published: almost 17 years ago

10.1155/2012/876976

A High-Throughput Computational Framework for Identifying Significant Copy Number Aberrations from Array Comparative Genomic Hybridisation Data
Cited by: 1
Author(s): Ian Roberts, Stephanie A. Carter, Cinzia G. Scarpini, Konstantina Karagavriilidou, Jenny Barna, M. Calleja, Nicholas Coleman
Software Mentions: 7
Published: over 11 years ago

10.1186/1471-2105-8-145

A forward-backward fragment assembling algorithm for the identification of genomic amplification and deletion breakpoints using high-density single nucleotide polymorphism (SNP) array
Cited by: 24
Author(s): Tianwei Yu, Hui Ye, Wei Sun, Ker Chau Li, Zugen Chen, Sharoni Jacobs, Dione K. Bailey, David T. Wong, Xiaofeng Zhou
Software Mentions: 5
Published: about 17 years ago

10.1371/journal.pone.0005120

Integrated Functional, Gene Expression and Genomic Analysis for the Identification of Cancer Targets
Cited by: 106
Author(s): Elizabeth Iorns, Christopher J. Lord, Anita Grigoriadis, Sarah McDonald, Kerry Fenwick, Alan Mackay, Charles A. Mein, Rachael Natrajan, Kay Savage, Narinder Tamber, Jorge S. Reis‐Filho, Nicholas C. Turner, Alan Ashworth
Software Mentions: 4
Published: about 15 years ago

10.2174/138920209787581244

Using Free and Open-Source Bioconductor Packages to Analyze Array Comparative Genomics Hybridization (aCGH) Data
Cited by: 2
Author(s): Simon Lin, Pan Du, Nadereh Jafari, Toru Ouchi
Software Mentions: 4
Published: about 15 years ago

10.1186/1471-2105-11-200

Conditional random pattern model for copy number aberration detection
Cited by: 2
Author(s): Fuhai Li, Xiaobo Zhou, Wan‐Ting Huang, Chung Che Chang, Stephen T.C. Wong
Software Mentions: 3
Published: about 14 years ago

10.1038/cddis.2015.241

IMP2/p62 induces genomic instability and an aggressive hepatocellular carcinoma phenotype
Cited by: 61
Author(s): Sonja M. Kessler, Stephan Laggai, Ahmad Barghash, Christina S. Schultheiss, Eva Lederer, Monika Artl, Volkhard Helms, Johannes Haybaeck, Alexandra K. Kiemer
Software Mentions: 3
Published: over 8 years ago

10.1371/journal.pgen.1005686

Comparative Genomic Analyses of the Human NPHP1 Locus Reveal Complex Genomic Architecture and Its Regional Evolution in Primates
Cited by: 21
Author(s): Bo Yuan, Pengfei Liu, Aditya Gupta, Christine R. Beck, Anusha Tejomurtula, Ian Campbell, Tomasz Gambin, Alexandra D. Simmons, Marjorie Withers, R. Alan Harris, Jeffrey Rogers, David C. Schwartz, James R. Lupski
Software Mentions: 2
Published: over 8 years ago

10.1186/1471-2105-8-394

A response to Yu et al. "A forward-backward fragment assembling algorithm for the identification of genomic amplification and deletion breakpoints using high-density single nucleotide polymorphism (SNP) array", BMC Bioinformatics 2007, 8: 145
Cited by: 4
Author(s): Oscar M. Rueda, Ramón Díaz‐Uriarte
Software Mentions: 2
Published: over 16 years ago

10.1186/1471-2105-6-85

Cited by: 99
Author(s): Wei Chen, Fikret Erdogan, Hans‐Hilger Ropers, Steffen Lenzner, Reinhard Ullmann
Software Mentions: 2
Published: over 19 years ago

10.1186/1471-2164-12-456

Array Comparative Genomic Hybridizations: Assessing the ability to recapture evolutionary relationships using an in silico approach
Cited by: 4
Author(s): Luz B. Gilbert, Lee Chae, Takao Kasuga, John W. Taylor
Software Mentions: 2
Published: over 12 years ago

10.1186/s13104-017-2886-0

Array comparative genomic hybridization of 18 pancreatic ductal adenocarcinomas and their autologous metastases
Cited by: 7
Author(s): Valentin Rausch, Andreas Krieg, Jordi Camps, Bianca Behrens, Manfred Beier, Darawalee Wangsa, Kerstin Heselmeyer‐Haddad, Stephan Baldus, Wolfram Trudo Knoefel, Thomas Ried, Nikolas H. Stoecklein
Software Mentions: 2
Published: over 6 years ago

10.1155/2015/194624

aCGH-MAS: Analysis of aCGH by means of Multiagent System
Cited by: 1
Author(s): Juan F. De Paz, Rocío Benito, Javier Bajo, Ana E. Rodríguez, María Abáigar
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0109924

TP53 Mutational Status Is a Potential Marker for Risk Stratification in Wilms Tumour with Diffuse Anaplasia
Cited by: 78
Author(s): Mariana Maschietto, Richard D. Williams, Tasnim Chagtai, Sergey Popov, Neil J. Sebire, Gordan Vujanić, Elizabeth J. Perlman, James R. Anderson, Paul E. Grundy, Jeffrey S. Dome, Kathy Pritchard‐Jones
Software Mentions: 2
Published: over 9 years ago

10.3389/fcell.2021.713499

Copy Number Signatures and Clinical Outcomes in Upper Tract Urothelial Carcinoma
Cited by: 5
Author(s): Bao Guan, Liang Yuan, Huan Lü, Zhengzheng Xu, Yue Shi, Juan Li, Wenwen Kong, Chuanyu Tian, Yezhen Tan, Yanqing Gong, Jin Liu, Dong Fang, Qi Shen, Shiming He, Muhammad Shakeel, Zhongyuan Zhang, Qun He, Xuesong Li, Weimin Ci, Liqun Zhou
Software Mentions: 2
Published: over 2 years ago

10.1186/1755-8166-7-S1-P2

Diagnostic utility of array-based Comparative Genomic Hybridization in a clinical setting
Cited by: 0
Author(s): Frenny Sheth, Chaitanya Datar, Koumudi Godbole, Joris Andrieux, Manisha Desai, Bhumi Patel, Jayesh Sheth
Software Mentions: 1
Published: over 10 years ago

10.1038/s41598-019-50302-0

Whole Genome Sequencing of the Mutamouse Model Reveals Strain- and Colony-Level Variation, and Genomic Features of the Transgene Integration Site
Cited by: 4
Author(s): Matthew J. Meier, Marc A. Beal, Andrew Schoenrock, Carole L. Yauk, Francesco Marchetti
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pone.0113223

Oligonucleotide Arrays vs. Metaphase-Comparative Genomic Hybridisation and BAC Arrays for Single-Cell Analysis: First Applications to Preimplantation Genetic Diagnosis for Robertsonian Translocation Carriers
Cited by: 5
Author(s): Laia Ramos, Javier del Rey, Gemma Daina, Manel García‐Aragonés, Lluı́s Armengol, Alba Fernández-Encinas, M Parriego, Montserrat Boada, Olga Martínez-Passarell, M.R. Martorell, Oriol Casagran, Jordi Benet, J. Navarro
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0012932

Portrait of Ependymoma Recurrence in Children: Biomarkers of Tumor Progression Identified by Dual-Color Microarray-Based Gene Expression Analysis
Cited by: 40
Author(s): Matthieu Peyre, Frédéric Commo, Carmela Dantas‐Barbosa, Felipe Andreiuolo, Stéphanie Puget, Ludovic Lacroix, Françoise Drusch, Véronique Scott, Pascale Varlet, Audrey Mauguen, Philippe Dessen, Vladimir Lazar, Gilles Vassal, Jacques Grill
Software Mentions: 1
Published: over 13 years ago

10.1186/1755-8166-6-2

7q36 deletion and 9p22 duplication: effects of a double imbalance
Cited by: 8
Author(s): Karla de Oliveira Pelegrino, Sofia Mizuho Miura Sugayama, Ana Lúcia Catelani, Karina Lezirovitz, Fernando Kok, Maria de Lourdes Lopes Ferrari Chauffaille
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0080015

Correlation of Chromosomal Instability, Telomere Length and Telomere Maintenance in Microsatellite Stable Rectal Cancer: A Molecular Subclass of Rectal Cancer
Cited by: 35
Author(s): Lisa A. Boardman, Ruth A. Johnson, Kimberly Viker, Kari A. Hafner, Robert B. Jenkins, Douglas L. Riegert‐Johnson, Thomas C. Smyrk, Kristin Litzelman, Songwon Seo, Ronald E. Gangnon, Corinne D. Engelman, David N. Rider, Russell J. Vanderboom, Stephen N. Thibodeau, Gloria M. Petersen, Halcyon G. Skinner
Software Mentions: 1
Published: over 10 years ago

10.1186/1755-8794-1-25

Genome wide SNP comparative analysis between EGFR and KRAS mutated NSCLC and characterization of two models of oncogenic cooperation in non-small cell lung carcinoma
Cited by: 31
Author(s): Hélène Blons, Karine Pallier, Delphine Le Corre, Claire Danel, Maxime Tremblay-Gravel, Claude Houdayer, Élizabeth Fabre-Guillevin, Marc Riquet, Philippe Dessen, Pierre Laurent‐Puig
Software Mentions: 1
Published: almost 16 years ago

10.1186/1471-2407-11-201

Molecular cytogenetic characterization of canine histiocytic sarcoma: A spontaneous model for human histiocytic cancer identifies deletion of tumor suppressor genes and highlights influence of genetic background on tumor behavior
Cited by: 90
Author(s): Benoît Hédan, Rachael Thomas, Alison A. Motsinger‐Reif, Jérôme Abadie, Catherine André, John M. Cullen, Matthew Breen
Software Mentions: 1
Published: almost 13 years ago

10.1186/1471-2105-10-S1-S64

A new classification method using array Comparative Genome Hybridization data, based on the concept of Limited Jumping Emerging Patterns
Cited by: 5
Author(s): Tomasz Gambin, Krzysztof Walczak
Software Mentions: 1
Published: over 15 years ago

10.1186/s13052-015-0113-y

Pure interstitial dup(6)(q22.31q22.31) – a case report
Cited by: 3
Author(s): Frenny Sheth, Sunil Trivedi, Joris Andrieux, Jean Louis Blouin, Jayesh Sheth
Software Mentions: 1
Published: over 9 years ago

10.3390/genes1020294

Bioinformatics for Next Generation Sequencing Data
Cited by: 69
Author(s): Alberto Magi, Matteo Benelli, Alessia Gozzini, Francesca Girolami, Francesca Torricelli, Maria Luisa Brandi
Software Mentions: 1
Published: over 13 years ago

10.1186/s13059-015-0657-6

Intra-tumor genetic heterogeneity and alternative driver genetic alterations in breast cancers with heterogeneous HER2 gene amplification
Cited by: 103
Author(s): Charlotte K.Y. Ng, Luciano G. Martelotto, Arnaud Gauthier, Huei‐Chi Wen, Salvatore Piscuoglio, Raymond S. Lim, Catherine F. Cowell, Paul M. Wilkerson, Patty T. Wai, Daniel Nava Rodrigues, Laurent Arnould́, Felipe C. Geyer, Sansom Henrique Bromberg, Magali Lacroix-Triki, Frédérique Penault‐Llorca, S. Giard, Xavier Sastre-Garau, Rachael Natrajan, Larry Norton, Paul Cottu, Britta Weigelt, Anne Vincent‐Salomon, Jorge S. Reis‐Filho
Software Mentions: 1
Published: almost 9 years ago

10.1186/1748-717X-6-161

Genomic alterations in rectal tumors and response to neoadjuvant chemoradiotherapy: an exploratory study
Cited by: 13
Author(s): Chiara Molinari, Michela Ballardini, Nazario Teodorani, Massimo Carlo Giannini, Wainer Zoli, E Emiliani, Enrico Lucci, Alessandro Passardi, Paola Rosetti, Luca Saragoni, Massimo Giusti, Dino Amadori, Daniele Calistri
Software Mentions: 1
Published: over 12 years ago

10.1186/1755-8166-7-S1-P47

Partial deletion of distal long arm encompassing Jacobsen Syndrome
Cited by: 0
Author(s): Manisha Desai, Bhumi Patel, Chaitanya Datar, Anand Pandit, Prakash Ghambhir, Darshana Nayak, Jayesh Sheth, Frenny Sheth
Software Mentions: 1
Published: over 10 years ago

10.1186/s13039-016-0238-8

A pilot proof-of-principle study to compare fresh and vitrified cycle preimplantation genetic screening by chromosome microarray and next generation sequencing
Cited by: 13
Author(s): Gwo‐Chin Ma, Shee‐Uan Chen, Yu Shih Yang, Wen‐Hsiang Lin, Feng-Po Tsai, Chien-Chen Lin, Chi Hsien Chiu, Ming Chen
Software Mentions: 1
Published: about 8 years ago

Ecosyste.ms: Papers

Projects: bioconductor: aCGH

Papers Mentioning aCGH 32