Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: bioconductor: TnT
https://packages.ecosyste.ms/registries/bioconductor.org/packages/TnT
Interactive Visualization for Genomic Features
2 versions
Latest release: about 1 year ago
6,979 downloads total
Papers Mentioning TnT 17
10.1371/journal.pone.0102366
Semi-Supervised Morphosyntactic Classification of Old IcelandicCited by: 2
Author(s): Kryztof Urban, Timothy R. Tangherlini, Aurelijus Vijūnas, Peter Broadwell
Software Mentions: 3
Published: over 10 years ago
10.1093/database/baaa071
Exploring functionally annotated transcriptional consensus regulatory elements with CONRELCited by: 1
Author(s): Davide Dalfovo, Samuel Valentini, Alessandro Romanel
Software Mentions: 3
Published: almost 5 years ago
10.1371/journal.pone.0235078
The first juvenile dromaeosaurid (Dinosauria: Theropoda) from Arctic AlaskaCited by: 10
Author(s): Alfio Alessandro Chiarenza, Anthony R. Fiorillo, Ronald S. Tykoski, Paul J. McCarthy, Peter P. Flaig, Dori L. Contreras
Software Mentions: 3
Published: over 4 years ago
10.1038/s41598-019-57038-x
SWAV: a web-based visualization browser for sliding window analysisCited by: 8
Author(s): Zhenglin Zhu, Yawang Wang, Xichuan Zhou, Liuqing Yang, Geng Meng, Ze Zhang
Software Mentions: 2
Published: almost 5 years ago
10.1186/1471-2105-5-147
Cited by: 314Author(s): Hao Chen, Burt M. Sharp
Software Mentions: 2
Published: almost 21 years ago
10.1093/bioinformatics/bty994
iHam and pyHam: visualizing and processing hierarchical orthologous groupsCited by: 19
Author(s): Clément-Marie Train, Miguel Pignatelli, Adrian M. Altenhoff, Christophe Dessimoz
Software Mentions: 2
Published: almost 6 years ago
10.1186/1471-2105-6-S1-S4
BioCreAtIvE Task1A: entity identification with a stochastic taggerCited by: 26
Author(s): Shuhei Kinoshita, K. Bretonnel Cohen, Philip V. Ogren, Lawrence Hunter
Software Mentions: 2
Published: over 19 years ago
10.7717/peerj.8136
The first North American<i>Propterodon</i>(Hyaenodonta: Hyaenodontidae), a new species from the late Uintan of UtahCited by: 6
Author(s): Shawn P. Zack
Software Mentions: 1
Published: almost 5 years ago
10.3897/zookeys.770.24281
Two new species of Brusqeulia Razowski & Becker, 2000 from the Neotropics, with comments on the systematic position of the genus in relation to the Apolychrosis Amsel, 1962 group of genera (Lepidoptera, Tortricidae, Cochylini)Cited by: 0
Author(s): Jose V. Pérez Santa-Rita, Joaquín Baixeras
Software Mentions: 1
Published: over 6 years ago
10.1371/journal.pone.0178135
"I was in the darkness but the group brought me light": Development, relevance and feasibility of the Sondela HIV adjustment and coping interventionCited by: 5
Author(s): Nwabisa Shai, Yandisa Sikweyiya, Ingrid van der Heijden, Naeemah Abrahams, Rachel Jewkes
Software Mentions: 1
Published: over 7 years ago
10.1371/journal.pone.0076042
Improved Part-of-Speech Prediction in Suffix AnalysisCited by: 8
Author(s): Mario Fruzangohar, Trent Kroeger, David L. Adelson
Software Mentions: 1
Published: about 11 years ago
10.1093/bioinformatics/btw210
TnT: a set of libraries for visualizing trees and track-based annotations for the webCited by: 4
Author(s): Miguel Pignatelli
Software Mentions: 1
Published: over 8 years ago
10.1038/s41418-020-00725-4
PIWIL2 interacting with IKK to regulate autophagy and apoptosis in esophageal squamous cell carcinomaCited by: 10
Author(s): Xu Zhao, Lian Huang, Yilu Lu, Wenhao Jiang, Yue Song, Bojun Qiu, Dachang Tao, Yunqiang Liu, Yongxin Ma
Software Mentions: 1
Published: almost 4 years ago
10.1186/1471-2105-6-S1-S5
Exploring the boundaries: gene and protein identification in biomedical textCited by: 95
Author(s): Jenny Rose Finkel, Shipra Dingare, Christopher D. Manning, Malvina Nissim, Beatrice Alex, Claire Grover
Software Mentions: 1
Published: over 19 years ago
10.1186/2041-1480-2-S5-S7
Predicting speculation: a simple disambiguation approach to hedge detection in biomedical literatureCited by: 25
Author(s): Erik Velldal
Software Mentions: 1
Published: almost 14 years ago
10.1038/s41598-017-17657-8
A basal ursine bear (Protarctos abstrusus) from the Pliocene High Arctic reveals Eurasian affinities and a diet rich in fermentable sugarsCited by: 22
Author(s): Xiaoming Wang, Natalia Rybczynski, C. R. Harington, Stuart C. White, Richard H. Tedford
Software Mentions: 1
Published: almost 7 years ago
10.1186/s13071-017-2045-4
Phylogenetic analysis of the Australasian paralysis ticks and their relatives (Ixodidae: Ixodes: Sternalixodes)Cited by: 17
Author(s): Mackenzie L. Kwak, Ian Beveridge, Anson V. Koehler, M. B. Malipatil, Robin B. Gasser, Abdul Jabbar
Software Mentions: 1
Published: over 7 years ago