bioconductor: TCGAbiolinks | Projects

10.1186/s12885-021-08389-0

DNA methylation signatures associated with prognosis of gastric cancer
Cited by: 8
Author(s): Jing Dai, Akihiro Nishi, Zhexuan Li, Yang Zhang, Zhou Tong, Wei‐Cheng You, Wenqing Li, Kai-Feng Pan
Software Mentions: 2
Published: over 3 years ago

10.1186/s12967-021-03053-4

Single-cell analysis of a tumor-derived exosome signature correlates with prognosis and immunotherapy response
Cited by: 11
Author(s): Jiani Wu, Dongqiang Zeng, Shimeng Zhi, Zilan Ye, Wenjun Qiu, Na Huang, Li Sun, Chunlin Wang, Zhenzhen Wu, Jianping Bin, Yulin Liao, Min Shi, Wangjun Liao
Software Mentions: 2
Published: about 3 years ago

10.3389/fimmu.2021.658097

Dickkopf-1: A Promising Target for Cancer Immunotherapy
Cited by: 29
Author(s): Hang Yin Chu, Zihao Chen, Luyao Wang, Zongkang Zhang, Xinhuan Tan, Shuangshuang Liu, Bao-Ting Zhang, Aiping Lu, Yuanyuan Yu, Ge Zhang
Software Mentions: 2
Published: over 3 years ago

10.3389/fmolb.2020.602328

Prognostic Biomarker TP53 Mutations for Immune Checkpoint Blockade Therapy and Its Association With Tumor Microenvironment of Lung Adenocarcinoma
Cited by: 25
Author(s): Xinqing Lin, Liqiang Wang, Xiaohong Xie, Yinyin Qin, Zhanhong Xie, Ming Ouyang, Chengzhi Zhou
Software Mentions: 2
Published: about 4 years ago

10.3389/fmolb.2021.645470

Aberrant DNA Methylation-Mediated FOXF2 Dysregulation Is a Prognostic Risk Factor for Gastric Cancer
Cited by: 4
Author(s): Cheng Zhang, Yongzhi Li, Dong‐Qiu Dai
Software Mentions: 2
Published: about 3 years ago

10.3390/cancers12041019

Canonical BMP Signaling Executes Epithelial-Mesenchymal Transition Downstream of SNAIL1
Cited by: 15
Author(s): P. Frey, Antoine Devisme, Monika Schrempp, Geoffroy Andrieux, Melanie Boerries, Andreas Hecht
Software Mentions: 2
Published: over 4 years ago

10.3389/fonc.2020.613869

TSPAN7 Exerts Anti-Tumor Effects in Bladder Cancer Through the PTEN/PI3K/AKT Pathway
Cited by: 21
Author(s): Xi Yu, Shenglan Li, Mingrui Pang, Yang Du, Tao Xu, Tao Bai, Kang Yang, Juncheng Hu, Shaoming Zhu, Lei Wang, Xiuheng Liu
Software Mentions: 2
Published: almost 4 years ago

10.18632/oncotarget.25731

Identification of integrin drug targets for 17 solid tumor types
Cited by: 16
Author(s): Adith S. Arun, Clifford G. Tepper, Kit S. Lam
Software Mentions: 2
Published: over 6 years ago

10.18632/oncotarget.27204

Schwann cell reprogramming and lung cancer progression: a meta-analysis of transcriptome data
Cited by: 12
Author(s): Victor Menezes Silva, Jéssica Alves Gomes, Luciana Lucena Tenório, Genilda Castro de Omena Neta, Karen da Costa Paixão, Ana Kelly Fernandes Duarte, Gabriel Cerqueira Braz da Silva, Ricardo Jansen Santos Ferreira, Bruna Del Vechio Koike, Carolinne de Sales Marques, Rafael Danyllo da Silva Miguel, Aline Cavalcanti de Queiroz, Luciana Xavier Pereira, Carlos Alberto de Carvalho Fraga
Software Mentions: 2
Published: almost 5 years ago

10.3389/fonc.2020.01147

Development and Validation of a Gene Signature for Prediction of Relapse in Stage I Testicular Germ Cell Tumors
Cited by: 2
Author(s): Jianguo Zhou, Jie Yang, Sanli Jin, Siyu Xiao, Lei Shi, Zhang Ting-you, Hu Ma, Udo S. Gaipl
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0249002

An R package for divergence analysis of omics data
Cited by: 2
Author(s): Wikum Dinalankara, Qian Ke, Donald Geman, Luigi Marchionni
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pgen.1009023

TENET 2.0: Identification of key transcriptional regulators and enhancers in lung adenocarcinoma
Cited by: 19
Author(s): Daniel J. Mullen, Chunli Yan, Diane S. Kang, Baosen Zhou, Zea Borok, Crystal N. Marconett, Peggy J. Farnham, Ite A. Offringa, Suhn Kyong Rhie
Software Mentions: 2
Published: about 4 years ago

10.1534/g3.118.200296

A Catalogue of Putative cis-Regulatory Interactions Between Long Non-coding RNAs and Proximal Coding Genes Based on Correlative Analysis Across Diverse Human Tumors
Cited by: 2
Author(s): Swaraj Basu, Erik Larsson
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pgen.1006506

Somatic Mutation Patterns in Hemizygous Genomic Regions Unveil Purifying Selection during Tumor Evolution
Cited by: 23
Author(s): Jimmy Van den Eynden, Swaraj Basu, Erik Larsson
Software Mentions: 2
Published: almost 8 years ago

10.1371/journal.pcbi.1009193

Machine learning reveals mesenchymal breast carcinoma cell adaptation in response to matrix stiffness
Cited by: 8
Author(s): Vlada S. Rozova, Ayad G. Anwer, Anna Guller, Hamidreza Aboulkheyr Es, Zahra Khabir, Anastasiya I. Sokolova, Maxim U. Gavrilov, Ewa M. Goldys, Majid Ebrahimi Warkiani, Jean Paul Thiery, Andrei V. Zvyagin
Software Mentions: 2
Published: over 3 years ago

10.18632/aging.103553

A new survival model based on ferroptosis-related genes for prognostic prediction in clear cell renal cell carcinoma
Cited by: 68
Author(s): Guangzhen Wu, Qifei Wang, Yingkun Xu, Quan‐Lin Li, Liang Cheng
Software Mentions: 2
Published: over 4 years ago

10.3390/jpm10040287

Germline Genetic Association between Stromal Interaction Molecule 1 (STIM1) and Clinical Outcomes in Breast Cancer Patients
Cited by: 1
Author(s): Chi‐Cheng Huang, Min Lin, Yu Yang, Yu Wen Hsu, Henry Sung Ching Wong, Wei Chiao Chang
Software Mentions: 2
Published: almost 4 years ago

10.3390/jcm9061973

Tumor Immune Microenvironment Clusters in Localized Prostate Adenocarcinoma: Prognostic Impact of Macrophage Enriched/Plasma Cell Non-Enriched Subtypes
Cited by: 8
Author(s): Neil Jairath, Mark Farha, Saumini Srinivasan, Ruple Jairath, Michael D. Green, Robert T. Dess, W. Clay Jackson, Adam B. Weiner, Edward M. Schaeffer, Shuang G. Zhao, Felix Y. Feng, Issam El Naqa, Daniel E. Spratt
Software Mentions: 2
Published: over 4 years ago

10.1038/s41598-017-01957-0

Identification of Long Noncoding RNAs Deregulated in Papillary Thyroid Cancer and Correlated with BRAFV600E Mutation by Bioinformatics Integrative Analysis
Cited by: 27
Author(s): Lucas Goedert, Jéssica Rodrigues Plaça, César Seigi Fuziwara, Maiaro Cabral Rosa Machado, Desireé Rodrigues Plaça, Palloma Porto Almeida, Talita Perez Sanches, Jair Figueredo dos Santos, Amanda Cristina Corveloni, Illy Enne Gomes Pereira, Marcela Motta de Castro, Edna Teruko Kimura, Wilson A. Silva, Enilza Maria Espreáfico
Software Mentions: 2
Published: over 7 years ago

10.1038/s41416-020-0751-8

T-type calcium channel inhibition restores sensitivity to MAPK inhibitors in de-differentiated and adaptive melanoma cells
Cited by: 21
Author(s): Karol Granados, Laura Hüser, Aniello Federico, Sachindra Sachindra, Gretchen Wolff, Thomas Hielscher, Daniel Novak, Verónica Madrigal-Gamboa, Qian Sun, Marlene Vierthaler, Lionel Larribère, Viktor Umansky, Jochen Utikal
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41416-021-01470-2

The efficacy of anti-EGFR therapy in treating metastatic colorectal cancer differs between the middle/low rectum and the left-sided colon
Cited by: 4
Author(s): Kun-Han Lee, Wei Shone Chen, Jeng Kai Jiang, Shung Haur Yang, Huann Sheng Wang, Shih Ching Chang, Yuan Tzu Lan, Chun Chi Lin, Hung Hsin Lin, Sheng Chieh Huang, Hui Cheng, Yee Chao, Hao Wei Teng
Software Mentions: 2
Published: over 3 years ago

10.18632/aging.202179

Identification of “regulation of RhoA activity panel” as a prognostic and predictive biomarker for gastric cancer
Cited by: 1
Author(s): Wenwen Huang, Shuaiguo Zhao, Cheng Zhang, Zhongwu Li, Shaohua Ge, Baofeng Lian, Hui Feng, Kai Wang, Rui‐Hua Xu, Jiafu Ji, Jing Gao, Weiwei Shi, Lin Shen
Software Mentions: 2
Published: almost 4 years ago

10.1038/s41598-019-45151-w

Locally advanced rectal cancer transcriptomic-based secretome analysis reveals novel biomarkers useful to identify patients according to neoadjuvant chemoradiotherapy response
Cited by: 12
Author(s): Luísa Matos do Canto, Sarah Santiloni Cury, Mateus Camargo Barros-Filho, Bruna Elisa Catin Kupper, Maria D. Begnami, Cristovam Scapulatempo‐Neto, Robson Francisco Carvalho, Fábio Albuquerque Marchi, Dorte Aalund Olsen, Jonna Skov Madsen, Birgitte Mayland Havelund, Samuel Aguiar, Sílvia Regina Rogatto
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-019-49477-3

Germline variability and tumor expression level of ribosomal protein gene RPL28 are associated with survival of metastatic colorectal cancer patients
Cited by: 13
Author(s): Adrien Labriet, Éric Lévesque, Erika Cecchin, Elena De Mattia, Lyne Villeneuve, Michèle Rouleau, Derek J. Jonker, Félix Couture, David Simonyan, Éric P. Allain, Angela Buonadonna, Mario D’Andrea, Giuseppe Toffoli, Chantal Guillemette
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-020-60791-z

HDMAC: A Web-Based Interactive Program for High-Dimensional Analysis of Molecular Alterations in Cancer
Cited by: 3
Author(s): Chung Chou H. Chang, Chan-Yu Sung, Han Hsiao, Jiabin Chen, I‐Hsuan Chen, Wei‐Ting Kuo, Lung-Feng Cheng, Praveen Kumar Korla, Ming-Jhe Chung, Pei-Hsuan Wu, Chia‐Cheng Yu, Jim Jinn‐Chyuan Sheu
Software Mentions: 2
Published: over 4 years ago

10.1038/s41408-020-00362-7

FBXO11 is a candidate tumor suppressor in the leukemic transformation of myelodysplastic syndrome
Cited by: 11
Author(s): Michael Schieber, Christian Marinaccio, Lyndsey Bolanos, Wendy D. Haffey, Kenneth D. Greis, Daniel T. Starczynowski, John D. Crispino
Software Mentions: 2
Published: about 4 years ago

10.1038/s41598-020-74276-6

Pan-cancer driver copy number alterations identified by joint expression/CNA data analysis
Cited by: 6
Author(s): Gaojianyong Wang, Dimitris Anastassiou
Software Mentions: 2
Published: about 4 years ago

10.3390/biom11020274

Low Expression of miR-375 and miR-190b Differentiates Grade 3 Patients with Endometrial Cancer
Cited by: 2
Author(s): Miłosz Pietrus, Michał Seweryn, Przemysław Kapusta, Paweł Wołkow, Kazimierz Pityński, Gracjan Wątor
Software Mentions: 2
Published: almost 4 years ago

10.1038/s41598-021-92692-0

Transcriptome profiling by combined machine learning and statistical R analysis identifies TMEM236 as a potential novel diagnostic biomarker for colorectal cancer
Cited by: 20
Author(s): Neha Maurya, Sandeep Kushwaha, Aakash Chawade, Ashutosh Mani
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-021-95128-x

A stacking ensemble deep learning approach to cancer type classification based on TCGA data
Cited by: 45
Author(s): Mohanad Mohammed, Henry Mwambi, Innocent B. Mboya, Murtada K. Elbashir, Bernard Omolo
Software Mentions: 2
Published: over 3 years ago

10.1155/2015/831314

Integrative Analysis with Monte Carlo Cross-Validation Reveals miRNAs Regulating Pathways Cross-Talk in Aggressive Breast Cancer
Cited by: 27
Author(s): Antonio Colaprico, Claudia Cava, Gloria Bertoli, Gianluca Bontempi, Isabella Castiglioni
Software Mentions: 2
Published: almost 10 years ago

10.1242/bio.046961

Targeting of copper-trafficking chaperones causes gene-specific systemic pathology inDrosophila melanogaster: prospective expansion of mutational landscapes that regulate tumor resistance to cisplatin
Cited by: 6
Author(s): Eleni I. Theotoki, Athanassios D. Velentzas, Stamatia A. Katarachia, Νικολαοσ Παπανδρεου, Nikolas Kalavros, Sofia N. Pasadaki, Aikaterini F. Giannopoulou, Panagiotis Giannios, Vassiliki A. Iconomidou, Eumorphia G. Konstantakou, Ema Anastasiadou, Issidora S. Papassideri, Dimitrios J. Stravopodis
Software Mentions: 2
Published: almost 6 years ago

10.7150/ijbs.42962

Phosphoinositide specific phospholipase Cγ1 inhibition-driven autophagy caused cell death in human lung adenocarcinoma A549 cells in vivo and in vitro
Cited by: 8
Author(s): Xiaohong Lü, Haijing Fu, Rui Chen, Yue Wang, Yan-yan Zhan, Gang Song, Tianhui Hu, Chun Xia, Xuemei Tian, Bing Zhang
Software Mentions: 2
Published: almost 5 years ago

10.18632/aging.104084

Could microtubule inhibitors be the best choice of therapy in gastric cancer with high immune activity: mutant DYNC1H1 as a biomarker
Cited by: 6
Author(s): Jing Bai, Bowen Yang, Ruichuan Shi, Xinye Shao, Yujing Yang, Fang Wang, Jiawen Xiao, Xiujuan Qu, Yunpeng Liu, Ye Zhang, Zhi Li
Software Mentions: 2
Published: about 4 years ago

10.1186/s12920-020-0677-2

Convolutional neural network models for cancer type prediction based on gene expression
Cited by: 84
Author(s): Milad Mostavi, Yi-Chang Chiu, Yufei Huang, Yidong Chen
Software Mentions: 2
Published: over 4 years ago

10.1186/s12920-020-00741-w

Construction and analysis of a lncRNA-miRNA-mRNA network based on competitive endogenous RNA reveal functional lncRNAs in oral cancer
Cited by: 22
Author(s): Jian Yin, Xiaoli Zeng, Zexin Ai, Miao Yu, Yang’ou Wu, Shengjiao Li
Software Mentions: 2
Published: over 4 years ago

10.3390/ijms19123881

Tissue-Specific Down-Regulation of the Long Non-Coding RNAs PCAT18 and LINC01133 in Gastric Cancer Development
Cited by: 34
Author(s): Kobra Foroughi, Mohammad Amini, Amir Atashi, Habibollah Mahmoodzadeh, Ute Hamann, Mehdi Manoochehri
Software Mentions: 2
Published: almost 6 years ago

10.3389/fbioe.2020.00031

Transcriptomic Analyses for Identification and Prioritization of Genes Associated With Alzheimer’s Disease in Humans
Cited by: 17
Author(s): Yuchen Shi, Hui Liu, Changbo Yang, Kang Xu, Yangyang Cai, Zhao Wang, Zheng Zhao, Tingting Shao, Yixue Li
Software Mentions: 2
Published: over 4 years ago

10.1038/s12276-021-00639-2

YAP inactivation in estrogen receptor alpha-positive hepatocellular carcinoma with less aggressive behavior
Cited by: 5
Author(s): Youngsic Jeon, Jeong Eun Yoo, Hyungjin Rhee, Young-Joo Kim, Gwang Il Kim, Taek Chung, Sarah Yoon, Boram Shin, Hyun Goo Woo, Young Nyun Park
Software Mentions: 2
Published: over 3 years ago

10.3389/fendo.2021.640298

Intracellular Progesterone Receptor and cSrc Protein Working Together to Regulate the Activity of Proteins Involved in Migration and Invasion of Human Glioblastoma Cells
Cited by: 6
Author(s): Claudia Bello‐Alvarez, Aylin Del Moral-Morales, Aliesha González-Arenas, Ignacio Camacho‐Arroyo
Software Mentions: 2
Published: over 3 years ago

10.1016/j.csbj.2020.10.015

Integrative omics analysis reveals relationships of genes with synthetic lethal interactions through a pan-cancer analysis
Cited by: 3
Author(s): Li Guo, Sunjing Li, Bowen Qian, Youquan Wang, Rui Duan, Wenwen Jiang, Yihao Kang, Yuyang Dou, Guowei Yang, Lulu Shen, Jun Wang, Tingming Liang
Software Mentions: 2
Published: almost 5 years ago

10.1038/s42003-019-0369-7

The combination of neoantigen quality and T lymphocyte infiltrates identifies glioblastomas with the longest survival
Cited by: 46
Author(s): Jing Zhang, Francesca Pia Caruso, K. Jason, Sune Justesen, Do Hyun Nam, Peter A. Sims, Michele Ceccarelli, Anna Lasorella, Antonio Iavarone
Software Mentions: 2
Published: over 5 years ago

10.1007/s00018-019-03066-9

Stabilization of E2-EPF UCP protein is implicated in hepatitis B virus-associated hepatocellular carcinoma progression
Cited by: 5
Author(s): Jung Hwa Lim, Dae–Ghon Kim, Dae–Yeul Yu, Hyun Mi Kang, Kyung Hee Noh, Dae‐Soo Kim, Dongmin Park, Tae Kyung Chang, Dong-Soo Im, Cho‐Rok Jung
Software Mentions: 2
Published: over 5 years ago

10.3389/fgene.2020.612521

An Integrative Computational Approach Based on Expression Similarity Signatures to Identify Protein–Protein Interaction Networks in Female-Specific Cancers
Cited by: 4
Author(s): Katia Pane, Ornella Affinito, Mario Zanfardino, Rossana Castaldo, Mariarosaria Incoronato, Marco Salvatore, Monica Franzese
Software Mentions: 1
Published: almost 4 years ago

10.18632/oncotarget.24358

NFkB hyperactivation causes invasion of esophageal squamous cell carcinoma with EGFR overexpression and p120-catenin down-regulation
Cited by: 13
Author(s): Heather L. Lehman, Michal Kidacki, Joshua I. Warrick, Douglas B. Stairs
Software Mentions: 1
Published: almost 7 years ago

10.1186/s13040-021-00273-8

iGlioSub: an integrative transcriptomic and epigenomic classifier for glioblastoma molecular subtypes
Cited by: 6
Author(s): Miquel Ensenyat-Méndez, Sandra Íñiguez-Muñoz, Borja Sesé, Diego M. Marzese
Software Mentions: 1
Published: about 3 years ago

10.3390/cancers12113369

The Expression Profiles of ADME Genes in Human Cancers and Their Associations with Clinical Outcomes
Cited by: 14
Author(s): Dong Hu, Peter I. Mackenzie, Pramod C. Nair, Ross A. McKinnon, Robyn Meech
Software Mentions: 1
Published: about 4 years ago

10.3389/fgene.2020.00933

ATM Mutations Benefit Bladder Cancer Patients Treated With Immune Checkpoint Inhibitors by Acting on the Tumor Immune Microenvironment
Cited by: 26
Author(s): Ruibin Yi, Anqi Lin, Manming Cao, Aiming Xu, Peng Luo, Jian Zhang
Software Mentions: 1
Published: over 4 years ago

10.3390/cancers11081184

TIMP-1-Mediated Chemoresistance via Induction of IL-6 in NSCLC
Cited by: 13
Author(s): Wei Xiao, Lan Wang, John H. Howard, Ravindra Kolhe, Amyn M. Rojiani, Mumtaz V. Rojiani
Software Mentions: 1
Published: over 5 years ago

10.1186/s12860-020-00313-x

Selecting suitable reference genes for qPCR normalization: a comprehensive analysis in MCF-7 breast cancer cell line
Cited by: 8
Author(s): Nityanand Jain, Dina Nitiša, Valdis Pirsko, Inese Čakstiņa
Software Mentions: 1
Published: about 4 years ago

10.3390/ijms20235825

In Silico Approach for the Definition of radiomiRNomic Signatures for Breast Cancer Differential Diagnosis
Cited by: 14
Author(s): Francesca Gallivanone, Claudia Cava, Fabio Corsi, Gloria Bertoli, Isabella Castiglioni
Software Mentions: 1
Published: about 5 years ago

10.3390/cancers13102464

Evaluation of a Three-Marker Panel for the Detection of Uveal Melanoma Metastases: A Single-Center Retrospective Analysis
Cited by: 2
Author(s): Zenan Lin, Daniela Süßkind
Software Mentions: 1
Published: over 3 years ago

10.1186/s12859-016-1196-1

How interacting pathways are regulated by miRNAs in breast cancer subtypes
Cited by: 20
Author(s): Claudia Cava, Antonio Colaprico, Gloria Bertoli, Gianluca Bontempi, Giancarlo Mauri, Isabella Castiglioni
Software Mentions: 1
Published: about 8 years ago

10.1038/s41420-021-00422-2

The functional landscape of Golgi membrane protein 1 (GOLM1) phosphoproteome reveal GOLM1 regulating P53 that promotes malignancy
Cited by: 7
Author(s): Qiancheng Song, Xiang He, Ying Xiong, Junlan Wang, Lei Zhang, Elaine Lai‐Han Leung, Guoping Li
Software Mentions: 1
Published: over 3 years ago

10.1186/s12920-019-0603-7

Classification of glioma based on prognostic alternative splicing
Cited by: 20
Author(s): Yaomin Li, Zhonglu Ren, Yu‐Ping Peng, Kaishu Li, Xiran Wang, Guanglong Huang, Songtao Qi, Yawei Liu
Software Mentions: 1
Published: about 5 years ago

10.1002/cam4.2795

Knockdown of MAPK14 inhibits the proliferation and migration of clear cell renal cell carcinoma by downregulating the expression of CDC25B
Cited by: 17
Author(s): Junlong Liu, Xiuyue Yu, Hongyuan Yu, Bitian Liu, Zhe Zhang, Chuize Kong, Zhenhua Li
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41420-019-0175-5

Kremen1-induced cell death is regulated by homo- and heterodimerization
Cited by: 13
Author(s): Iffat Sumia, Alessandra Pierani, Frédéric Causeret
Software Mentions: 1
Published: over 5 years ago

10.3389/fonc.2020.585961

Prognostic Implications of Pan-Cancer CMTM6 Expression and Its Relationship with the Immune Microenvironment
Cited by: 23
Author(s): Yanbin Zhao, Minghui Zhang, Haihong Pu, Shengyue Guo, Shuai Zhang, Yan Wang
Software Mentions: 1
Published: almost 4 years ago

10.1038/s41598-019-49809-3

An increased cell cycle gene network determines MEK and Akt inhibitor double resistance in triple-negative breast cancer
Cited by: 15
Author(s): Vera E. van der Noord, Ronan P. McLaughlin, Marcel Smid, John A. Foekens, John W.M. Martens, Yuanyuan Zhang, Bob van de Water
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-020-57758-5

p53 functional states are associated with distinct aldehyde dehydrogenase transcriptomic signatures
Cited by: 5
Author(s): Shanying Gui, Xiujie Xie, W. Quinn O’Neill, Kate Chatfield-Reed, Jun-Ge Yu, Theodoros N. Teknos, Quintin Pan
Software Mentions: 1
Published: almost 5 years ago

10.3390/medicina56100535

Identification of Prognosis Associated microRNAs in HNSCC Subtypes Based on TCGA Dataset
Cited by: 8
Author(s): Cintia Chamorro-Petronacci, Abel Garcı́a Garcı́a, Maria Elena Padín-Iruegas, B Rivas-Mundiña, Alejandro I. Lorenzo-Pouso, Mario Pérez‐Sayáns
Software Mentions: 1
Published: about 4 years ago

10.3389/fcell.2020.586581

Hypermethylation of LATS2 Promoter and Its Prognostic Value in IDH-Mutated Low-Grade Gliomas
Cited by: 5
Author(s): Yuan Gu, Yu Wang, Yebin Wang, Jiaqian Luo, Xin Wang, Mingyue Ma, Wei Hua, Ying Liu, Fa‐Xing Yu
Software Mentions: 1
Published: about 4 years ago

10.3389/fbioe.2020.00254

Early Diagnosis of Hepatocellular Carcinoma Using Machine Learning Method
Cited by: 61
Author(s): Zi-Mei Zhang, Jin Tan, Fang Wang, Fanny Dao, Zhao-Yue Zhang, Hao Lin
Software Mentions: 1
Published: over 4 years ago

10.1186/s40478-019-0746-y

Total copy number variation as a prognostic factor in adult astrocytoma subtypes
Cited by: 42
Author(s): Kanish Mirchia, Adwait Amod Sathe, Jamie M. Walker, Yelena Fudym, Kristyn Galbraith, Mariano S. Viapiano, Robert John Corona, Matija Snuderl, Chao Xing, Kimmo J. Hatanpaa, Timothy E. Richardson
Software Mentions: 1
Published: over 5 years ago

10.1038/s42003-021-02125-x

Integrated genomics and comprehensive validation reveal drivers of genomic evolution in esophageal adenocarcinoma
Cited by: 5
Author(s): Subodh Kumar, Leutz Buon, Srikanth Talluri, Marco Roncador, Chengcheng Liao, Jiangning Zhao, Jialan Shi, Chitraleema Chakraborty, Gabriel González, Yu‐Tzu Tai, Rao Prabhala, Mehmet K. Samur, Nikhil C. Munshi, Masood A. Shammas
Software Mentions: 1
Published: over 3 years ago

10.7150/jca.43010

A Functional Synonymous Variant in PDGFRA Is Associated with Better Survival in Acral Melanoma
Cited by: 6
Author(s): Jie Dai, Lu Yang, Tianxiao Xu, Lu Si, Chuanliang Cui, Xinan Sheng, Zhihong Chen, Lili Mao, Bin Lian, Bixia Tang, Xue Bai, Li Zhou, Siming Li, Xuan Wang, Xieqiao Yan, Yan Kong, Guo Jun
Software Mentions: 1
Published: almost 5 years ago

10.3390/biom10101365

High NRF2 Levels Correlate with Poor Prognosis in Colorectal Cancer Patients and with Sensitivity to the Kinase Inhibitor AT9283 In Vitro
Cited by: 20
Author(s): Laura Torrente, Gunjit Maan, Asma O.M. Rezig, Jean A. Quinn, Angus W. Jackson, Andrea Grilli, Laura Casares, Ying Zhang, Evgeny Kulesskiy, Jani Saarela, Silvio Bicciato, Joanne Edwards, Albena T. Dinkova‐Kostova, Laureano de la Vega
Software Mentions: 1
Published: about 4 years ago

10.3389/fgene.2020.00864

Identification of Transcription Factor/Gene Axis in Colon Cancer Using a Methylome Approach
Cited by: 1
Author(s): Jiayu Zhang, Bo Li, Kongchao Shen, Huaiyu Zhang, Zijian Gong, Huaqing Shi, Yang Jiang
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-021-90381-6

The prognostic value of galactosylceramide-sulfotransferase (Gal3ST1) in human renal cell carcinoma
Cited by: 6
Author(s): Štefan Porubský, Malin Nientiedt, Maximilian C. Kriegmair, Jörn-Helge Heinrich Siemoneit, Roger Sandhoff, Richard Jennemann, Hendrik Borgmann, Timo Gaiser, Cleo–Aron Weis, Philipp Erben, Thomas Hielscher, Zoran V. Popović
Software Mentions: 1
Published: over 3 years ago

10.3390/biom10020306

System-Based Differential Gene Network Analysis for Characterizing a Sample-Specific Subnetwork
Cited by: 8
Author(s): Yoshihisa Tanaka, Yoshinori Tamada, Marie Ikeguchi, Fumiyoshi Yamashita, Yasushi Okuno
Software Mentions: 1
Published: almost 5 years ago

10.3390/ijms22041626

Hiltonol Cocktail Kills Lung Cancer Cells by Activating Cancer-Suppressors, PKR/OAS, and Restraining the Tumor Microenvironment
Cited by: 9
Author(s): Shu Chun Chang, Bo Xiang Zhang, Emily Chia Yu Su, Wei Wu, Tsung Han Hsieh, Andrés M. Salazar, Yen Kuang Lin, Jeak Ling Ding
Software Mentions: 1
Published: almost 4 years ago

10.3389/fendo.2019.00790

Identification of a Five-Gene Signature and Establishment of a Prognostic Nomogram to Predict Progression-Free Interval of Papillary Thyroid Carcinoma
Cited by: 25
Author(s): Mei Wu, Yuan Hu, Xiaobin Li, Quan Liao, Ziwen Liu
Software Mentions: 1
Published: about 5 years ago

10.3390/genes11121436

Comprehensive Transcriptomic Analysis Identifies ST8SIA1 as a Survival-Related Sialyltransferase Gene in Breast Cancer
Cited by: 9
Author(s): Jung‐Yu Kan, Sin-Hua Moi, Wen‐Chun Hung, Ming‐Feng Hou, Fang‐Ming Chen, Shen-Liang Shih, Jun‐Ping Shiau, Chung-Liang Li, Chiao-Ching Chiang
Software Mentions: 1
Published: almost 4 years ago

10.3389/fphar.2020.01213

Prognosis of Lung Adenocarcinoma Patients With NTRK3 Mutations to Immune Checkpoint Inhibitors
Cited by: 25
Author(s): Yucun Niu, Anqi Lin, Peng Luo, Wei Zhu, Ting Wei, Ruixiang Tang, Linlang Guo, Jian Zhang
Software Mentions: 1
Published: over 4 years ago

10.3390/cells10020301

Eukaryotic Translation Initiation Factor 4AI: A Potential Novel Target in Neuroblastoma
Cited by: 9
Author(s): Christina Skofler, Florian Kleinegger, Stefanie Krassnig, Anna Maria Birkl-Toeglhofer, Georg Singer, Holger Till, Martin Benesch, Regina Cencic, John A. Porco, Jerry Pelletier, Christoph Castellani, Andrea Raicht, Ewa Iżycka-Świeszewska, Piotr Czapiewski, Johannes Haybaeck
Software Mentions: 1
Published: almost 4 years ago

10.7150/thno.36274

Theranostic application of miR-429 in HER2+ breast cancer
Cited by: 21
Author(s): Claudia Cava, Chiara Novello, Cristina Martelli, Alessia Lodico, Luisa Ottobrini, F Piccotti, Marta Truffi, Fabio Corsi, Gloria Bertoli, Isabella Castiglioni
Software Mentions: 1
Published: almost 5 years ago

Projects: bioconductor: TCGAbiolinks

Papers Mentioning TCGAbiolinks 276