Projects: bioconductor: TADCompare
https://packages.ecosyste.ms/registries/bioconductor.org/packages/TADCompare
TADCompare: Identification and characterization of differential TADs
1 version
Latest release: over 2 years ago
3,792 downloads total
Enhanced Analysis
Educational Contributors:
cresswellkg@vcu.edu
Repository Activity:
Repository Owner:
Dozmorov Lab (organization)
Genomics, bionformatics, computational biology, 3D genome, Hi-C Academic
Genomics, bionformatics, computational biology, 3D genome, Hi-C Academic
README Analysis:
DOI Found
Science Score: 100/100
Starting Score: 100 points
Bonuses:
-
+20
Educational commit emails
1 contributors with educational email addresses -
+20
Academic repository owner
Repository owned by academic institution -
+15
Institutional repository owner
Repository owned by research institution -
+12
Science terms in README
6 scientific terms found in README -
+10
DOI references
1 DOI references found in README
Very Likely Science (100)
Papers Mentioning TADCompare 4
10.1186/s13059-021-02460-6
Functional genomics atlas of synovial fibroblasts defining rheumatoid arthritis heritabilityCited by: 23
Author(s): Xin Ge, Mojca Frank-Bertoncelj, Kerstin Klein, Amanda McGovern, Tadeja Kuret, Miranda Houtman, Blaž Burja, Raphael Micheroli, Chenfu Shi, Miriam Marks, Andrew Filer, Christopher D. Buckley, Gisela Orozco, Oliver Distler, Andrew P. Morris, Paul Martin, Stephen Eyre, Caroline Ospelt
Software Mentions: 5
Published: almost 5 years ago
10.3389/fgene.2020.00158
TADCompare: An R Package for Differential and Temporal Analysis of Topologically Associated DomainsCited by: 32
Author(s): Kellen Garrison Cresswell, Mikhail G. Dozmorov
Software Mentions: 4
Published: about 6 years ago
10.1186/s12859-021-04113-8
Deciphering hierarchical organization of topologically associated domains through change-point testingCited by: 11
Author(s): Haipeng Xing, Yingru Wu, Michael Q. Zhang, Yong Chen
Software Mentions: 3
Published: about 5 years ago
10.1186/s13059-020-02108-x
Spatial patterns of CTCF sites define the anatomy of TADs and their boundariesCited by: 39
Author(s): Luca Nanni, Stefano Ceri, Colin Logie
Software Mentions: 2
Published: almost 6 years ago