Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: bioconductor: SingleCellSignalR

https://packages.ecosyste.ms/registries/bioconductor.org/packages/SingleCellSignalR

Cell Signalling Using Single Cell RNAseq Data Analysis
1 version
Latest release: about 1 year ago
2 dependent packages
8,762 downloads total

Papers Mentioning SingleCellSignalR 7

10.3389/fcell.2020.593007
Exploring Additional Valuable Information From Single-Cell RNA-Seq Data
Cited by: 12
Author(s): Yunjin Li, Qiyue Xu, Duojiao Wu, Geng Chen
Software Mentions: 7
Published: almost 4 years ago
10.1172/jci.insight.141321
Single cell transcriptomics of mouse kidney transplants reveals a myeloid cell pathway for transplant rejection
Cited by: 26
Author(s): Anil Dangi, Naveen Natesh, Irma Husain, Zhicheng Ji, Laura Barisoni, Jean Kwun, Xiling Shen, Edward B. Thorp, Xunrong Luo
Software Mentions: 4
Published: about 4 years ago
10.1038/s41421-021-00260-7
Spatio-temporal landscape of mouse epididymal cells and specific mitochondria-rich segments defined by large-scale single-cell RNA-seq
Cited by: 23
Author(s): Jianwu Shi, Kin Lam Fok, Pengyuan Dai, Feng Qiao, Mengya Zhang, Huage Liu, Mengmeng Sang, Mei Ye, Yang Liu, Yiwen Zhou, Chengniu Wang, Fei Sun, Gangcai Xie, Hao Chen
Software Mentions: 3
Published: over 3 years ago
10.1186/s13578-021-00635-z
Applications and analytical tools of cell communication based on ligand-receptor interactions at single cell level
Cited by: 17
Author(s): Fen Ma, Siwei Zhang, Lixia Song, Bozhi Wang, Lanlan Wei, Fengmin Zhang
Software Mentions: 2
Published: over 3 years ago
10.1038/s41416-021-01394-x
A deep convolutional neural network for segmentation of whole-slide pathology images identifies novel tumour cell-perivascular niche interactions that are associated with poor survival in glioblastoma
Cited by: 16
Author(s): Amin Zadeh Shirazi, Mark D. McDonnell, Eric Fornaciari, Narjes Sadat Bagherian, Kaitlin G. Scheer, Michael S. Samuel, Mahdi Yaghoobi, Rebecca J. Ormsby, Santosh Poonnoose, Damon J. Tumes, Guillermo A. Gómez
Software Mentions: 2
Published: over 3 years ago
10.3389/fgene.2021.708835
LR Hunting: A Random Forest Based Cell–Cell Interaction Discovery Method for Single-Cell Gene Expression Data
Cited by: 7
Author(s): Min Lü, Yifan Sha, Tiago C. Silva, Antonio Colaprico, Xiaodian Sun, Yuguang Ban, Lily Wang, Brian D. Lehmann, X Steven Chen
Software Mentions: 2
Published: about 3 years ago
10.21203/rs.3.rs-664507/v1
Myeloid cell interferon responses correlate with clearance of SARS-CoV-2
Cited by: 2
Author(s): Dhiraj Kumar Singh, Ekaterina Aladyeva, Shibali Das, Bindu Singh, Ekaterina Esaulova, Amanda Swain, Mushtaq Ahmed, Journey Cole, Chivonne Moodley, Smriti Mehra, Larry S. Schlesinger, Maxim N. Artyomov, Shabaana A. Khader, Deepak Kaushal
Software Mentions: 2
Published: over 3 years ago