Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: bioconductor: STAN
https://packages.ecosyste.ms/registries/bioconductor.org/packages/STAN
The Genomic STate ANnotation Package
1 version
Latest release: about 1 year ago
14,838 downloads total
Papers Mentioning STAN 150
10.7717/peerj.4886
Reef fish communities are spooked by scuba surveys and may take hours to recoverCited by: 49
Author(s): Michael J. Emslie, Alistair J. Cheal, M. Aaron MacNeil, Ian Miller, Hugh Sweatman
Software Mentions: 1
Published: over 6 years ago
10.7717/peerj.8247
Unprofessional peer reviews disproportionately harm underrepresented groups in STEMCited by: 80
Author(s): Nyssa J. Silbiger, Amber D. Stubler
Software Mentions: 1
Published: almost 5 years ago
10.1371/journal.pcbi.1007703
The spread of a wild plant pathogen is driven by the road networkCited by: 10
Author(s): Elina Numminen, Anna‐Liisa Laine
Software Mentions: 1
Published: over 4 years ago
10.1371/journal.pone.0163587
Seasonal and Diel Vocalization Patterns of Antarctic Blue Whale (Balaenoptera musculus intermedia) in the Southern Indian Ocean: A Multi-Year and Multi-Site StudyCited by: 41
Author(s): Emmanuelle C. Leroy, Flore Samaran, Julien Bonnel, Jean‐Yves Royer
Software Mentions: 1
Published: almost 8 years ago
10.1371/journal.pone.0175823
The electrical heart axis and ST events in fetal monitoring: A post-hoc analysis following a multicentre randomised controlled trialCited by: 11
Author(s): Rik Vullings, Kim M. J. Verdurmen, Alexandra D.J. Hulsenboom, Stéphanie E.C.M.G. Scheffer, Hinke de Lau, Anneke Kwee, Pff Pieter Wijn, Isis Amer‐Wåhlin, Judith O E H van Laar, S.G. Oei
Software Mentions: 1
Published: over 7 years ago
10.1371/journal.pone.0256154
A novel algorithm based on ensemble empirical mode decomposition for non-invasive fetal ECG extractionCited by: 15
Author(s): Katerina Barnova, Radek Martínek, René Jaroš, Radana Kahánková, A. Matonia, Michał Jeżewski, Robert Czabański, K. Horoba, Janusz Jeżewski
Software Mentions: 1
Published: about 3 years ago
10.1371/journal.pone.0083234
Kinetic and Structural Studies of Aldehyde Oxidoreductase from Desulfovibrio gigas Reveal a Dithiolene-Based Chemistry for Enzyme Activation and Inhibition by H2O2Cited by: 7
Author(s): Jacopo Marangon, H.D. Correia, Carlos D. Brondino, José J. G. Moura, Maria João Romão, Pablo J. González, Teresa Santos‐Silva
Software Mentions: 1
Published: almost 11 years ago
10.1371/journal.pone.0169881
Analysis of the Spatial Organization of Pastures as a Contact Network, Implications for Potential Disease Spread and Biosecurity in Livestock, France, 2010Cited by: 13
Author(s): Aurore Palisson, Aurélie Courcoul, Benoı̂t Durand
Software Mentions: 1
Published: almost 8 years ago
10.1371/journal.pone.0190463
Correlation of a new index reflecting the fluctuation of parasympathetic tone and fetal acidosis in an experimental study in a sheep modelCited by: 12
Author(s): Charles Garabédian, Y. Clermont-Hama, Dyuti Sharma, E. Aubry, Laura Butruille, Philippe Deruelle, Laurent Storme, Julien De Jonckheere, V. Houfflin‐Debarge
Software Mentions: 1
Published: almost 7 years ago
10.1371/journal.pone.0232769
Model based estimation of QT intervals in non-invasive fetal ECG signalsCited by: 8
Author(s): Namareq Widatalla, Yoshiyuki Kasahara, Yoshitaka Kimura, Ahsan H. Khandoker
Software Mentions: 1
Published: over 4 years ago
10.1371/journal.pone.0214357
Relative versus absolute rises in T/QRS ratio by ST analysis of fetal electrocardiograms in labour: A case-control pilot studyCited by: 6
Author(s): Alexandra D.J. Hulsenboom, Kim M. J. Verdurmen, Rik Vullings, M. Beatrijs van der Hout–van der Jagt, Anneke Kwee, Judith O E H van Laar, S.G. Oei
Software Mentions: 1
Published: over 5 years ago
10.1371/journal.pone.0221210
ST analysis of the fetal electrocardiogram – Comments on recent experimental dataCited by: 1
Author(s): Ingemar Kjellmer, Kaj Lindecrantz, Karl G. Rosén
Software Mentions: 1
Published: about 5 years ago
10.1371/journal.pone.0208599
Determination of car seat contact area for personalised thermal sensation modellingCited by: 6
Author(s): Miloš Fojtlín, Agnes Psikuta, Róbert Toma, Jan Fišer, Miroslav Jícha
Software Mentions: 1
Published: almost 6 years ago
10.1371/journal.pone.0112296
Comparison of a Novel Computerized Analysis Program and Visual Interpretation of CardiotocographyCited by: 11
Author(s): Chen‐Yu Chen, Chun Yu, Chiung-Fen Chang, Chii-Wann Lin
Software Mentions: 1
Published: almost 10 years ago
10.1371/journal.pone.0221220
Why -aVF can be used in STAN as a proxy for scalp electrode-derived signal; reply to comments by Kjellmer et al.Cited by: 0
Author(s): Tammo Delhaas, Peter Andriessen, Judith O E H van Laar, Rik Vullings, Ben J. M. Hermans, Hendrik J. Niemarkt, Reint K. Jellema, Daan Ophelders, Tim G. A. M. Wolfs, Boris W. Kramer, Alex Zwanenburg
Software Mentions: 1
Published: about 5 years ago
10.3758/s13415-020-00820-6
The influence of internal models on feedback-related brain activityCited by: 2
Author(s): Franz Wurm, Benjamin Ernst, Marco Steinhauser
Software Mentions: 1
Published: about 4 years ago
10.1155/2019/3481624
Heterogeneity Matters: Predicting Self-Esteem in Online Interventions Based on Ecological Momentary Assessment DataCited by: 3
Author(s): Vincent Bremer, Burkhardt Funk, Heleen Riper
Software Mentions: 1
Published: almost 6 years ago
10.1111/1462-2920.14786
The microbiome of the <i>Melitaea cinxia</i> butterfly shows marked variation but is only little explained by the traits of the butterfly or its host plantCited by: 21
Author(s): Guillaume Minard, Gleb Tikhonov, Otso Ovaskainen, Marjo Saastamoinen
Software Mentions: 1
Published: about 5 years ago
10.1097/EDE.0000000000000655
Estimating Local Chlamydia Incidence and Prevalence Using Surveillance DataCited by: 17
Author(s): Joanna Lewis, Peter J White
Software Mentions: 1
Published: over 7 years ago
10.1057/s41287-020-00333-5
Hierarchical Modelling of COVID-19 Death Risk in India in the Early Phase of the PandemicCited by: 6
Author(s): Wendy Olsen, Manasi Bera, Amaresh Dubey, Jihye Kim, Arkadiusz Wiśniowski, Purva Yadav
Software Mentions: 1
Published: almost 4 years ago
10.1016/j.eurox.2020.100120
Low sensitivity of the new FIGO classification system for electronic fetal monitoring to identify fetal acidosis in the second stage of laborCited by: 8
Author(s): Frida Ekengård, Monika Cardell, Andreas Herbst
Software Mentions: 1
Published: almost 4 years ago
10.3389/fped.2020.00508
Multi-Channel Fetal ECG Denoising With Deep Convolutional Neural NetworksCited by: 15
Author(s): Eleni Fotiadou, Rik Vullings
Software Mentions: 1
Published: about 4 years ago
10.3389/fphys.2019.00255
Computer-Aided Diagnosis System of Fetal Hypoxia Incorporating Recurrence Plot With Convolutional Neural NetworkCited by: 58
Author(s): Zhidong Zhao, Yang Zhang, Zafer Cömert, Yanjun Deng
Software Mentions: 1
Published: over 5 years ago
10.3389/fphys.2018.00648
Comparative Effectiveness of ICA and PCA in Extraction of Fetal ECG From Abdominal Signals: Toward Non-invasive Fetal MonitoringCited by: 75
Author(s): Radek Martínek, Radana Kahánková, Janusz Jeżewski, René Jaroš, Jitka Mohylová, Marcel Fajkus, Jan Nedoma, Petr Janků, Homer Nazeran
Software Mentions: 1
Published: over 6 years ago
10.3389/fpsyg.2021.666839
Talent Selection Strategies and Relationship With Success in European Basketball National Team ProgramsCited by: 1
Author(s): Antón Kalén, Alexis Padrón-Cabo, Erik Lundkvist, Ezequiel Rey, Alexandra Pérez-Ferreirós
Software Mentions: 1
Published: over 3 years ago
10.1186/gb-2005-6-10-r83
Cited by: 143Author(s): Pascale Quignon, Mathieu Giraud, Maud Rimbault, Patricia Lavigne, Sandrine Tacher, Emmanuelle Morin, Retout Elodie, Anne-Sophie Valin, Kerstin Lindblad‐Toh, Jacques Nicolas, Francis Galibert
Software Mentions: 1
Published: almost 20 years ago
10.1186/2197-425X-2-19
Effects of glycemic control on glucose utilization and mitochondrial respiration during resuscitated murine septic shockCited by: 11
Author(s): J. Vogt, Ulrich Wachter, Katja Wagner, Enrico Calzia, Michael Gröger, Sandra Weber, Bettina Stahl, Michael Georgieff, Pierre Asfar, Éric Fontaine, Peter Radermacher, Xavier Leverve, Florian Wagner
Software Mentions: 1
Published: over 10 years ago
10.1093/jamia/ocaa322
STAN: spatio-temporal attention network for pandemic prediction using real-world evidenceCited by: 49
Author(s): Jianliang Gao, Rakshith Sharma, Qi Cheng, Lucas M. Glass, Jeffrey Spaeder, Justin Romberg, Jimeng Sun, Cao Xiao
Software Mentions: 1
Published: almost 4 years ago
10.1073/pnas.2008590117
Seasonality and uncertainty in global COVID-19 growth ratesCited by: 174
Author(s): Cory Merow, Mark C. Urban
Software Mentions: 1
Published: about 4 years ago
10.1007/s00213-019-05325-w
Computational modelling reveals contrasting effects on reinforcement learning and cognitive flexibility in stimulant use disorder and obsessive-compulsive disorder: remediating effects of dopaminergic D2/3 receptor agentsCited by: 54
Author(s): Jonathan W. Kanen, Karen D. Ersche, Naomi Fineberg, Trevor W. Robbins, Rudolf N. Cardinal
Software Mentions: 1
Published: over 5 years ago
10.1098/rsos.160526
Offspring sex preferences among patrilineal and matrilineal Mosuo in Southwest China revealed by differences in parity progressionCited by: 18
Author(s): Siobhán M. Mattison, Bret Beheim, Bridget Chak, Peter M. Buston
Software Mentions: 1
Published: about 8 years ago
10.1016/j.resconrec.2019.02.022
How will second-use of batteries affect stocks and flows in the EU? A model for traction Li-ion batteriesCited by: 87
Author(s): Silvia Bobba, Fabrice Mathieux, Gian Andrea Blengini
Software Mentions: 1
Published: over 5 years ago
10.1016/j.resconrec.2020.105065
Phosphorus stocks and flows in an intensive livestock dominated food systemCited by: 29
Author(s): Shane A. Rothwell, Donnacha G. Doody, Chris Johnston, Kirsty Forber, Oliver Cencic, Helmut Rechberger, Paul J. A. Withers
Software Mentions: 1
Published: almost 4 years ago
10.1038/s41598-017-08653-z
Nutritional status and the influence of TV consumption on female body size ideals in populations recently exposed to the mediaCited by: 14
Author(s): Jean-Luc Jucker, Tracey Thornborrow, Ulrik Beierholm, D. M. Burt, Robert A. Barton, E. Hywel Evans, Mark Jamieson, Martin J. Tovée, Lynda G. Boothroyd
Software Mentions: 1
Published: about 7 years ago
10.1038/s41598-018-31898-1
Validation of beat by beat fetal heart signals acquired from four-channel fetal phonocardiogram with fetal electrocardiogram in healthy late pregnancyCited by: 18
Author(s): Ahsan H. Khandoker, Emad A. Ibrahim, Sayako Oshio, Yoshitaka Kimura
Software Mentions: 1
Published: about 6 years ago
10.1038/s41598-019-39600-9
Peer effects on control-averse behaviorCited by: 2
Author(s): Sarah Rudorf, Thomas Baumgärtner, Daria Knoch
Software Mentions: 1
Published: over 5 years ago
10.1038/s41598-021-82255-8
Effect of relative social rank within a social hierarchy on neural activation in response to familiar or unfamiliar social signalsCited by: 16
Author(s): Won Lee, Hollie Dowd, Cyrus Nikain, Madeleine F. Dwortz, Eilene Yang, James P. Curley
Software Mentions: 1
Published: almost 4 years ago
10.1038/s41598-021-91884-y
Natural nutrient subsidies alter demographic rates in a functionally important coral-reef fishCited by: 7
Author(s): Cassandra E. Benkwitt, Brett M. Taylor, Mark G. Meekan, Nicholas A. J. Graham
Software Mentions: 1
Published: over 3 years ago
10.3390/s21155186
Advanced Bioelectrical Signal Processing Methods: Past, Present and Future Approach—Part I: Cardiac SignalsCited by: 20
Author(s): Radek Martínek, Martina Ládrová, Michaela Šidiková, René Jaroš, Khosrow Behbehani, Radana Kahánková, Aleksandra Kawala-Sterniuk
Software Mentions: 1
Published: over 3 years ago
10.1093/scan/nsaa040
Computational modelling of social cognition and behaviour—a reinforcement learning primerCited by: 52
Author(s): Patricia L. Lockwood, Miriam C. Klein-Flügge
Software Mentions: 1
Published: over 4 years ago
10.1186/s40064-016-2787-z
Electrocardiography versus photoplethysmography in assessment of maternal heart rate variability during laborCited by: 15
Author(s): Hernâni Gonçalves, Paula Pinto, Maria Manuela Silva, Diogo Ayres-de-Campos, João Bernardes
Software Mentions: 1
Published: over 8 years ago
10.1177/0962280217747054
Fitting mechanistic epidemic models to data: A comparison of simple Markov chain Monte Carlo approachesCited by: 29
Author(s): Michael Li, Jonathan Dushoff, Benjamin M. Bolker
Software Mentions: 1
Published: over 6 years ago
10.1186/s13643-016-0260-2
The magnitude and mechanisms of the weekend effect in hospital admissions: A protocol for a mixed methods review incorporating a systematic review and framework synthesisCited by: 17
Author(s): Yen-Fu Chen, Amunpreet Boyal, Elizabeth Sutton, Xavier Armoiry, Samuel Watson, Julian Bion, Carolyn Tarrant
Software Mentions: 1
Published: over 8 years ago
10.1186/s13063-020-04623-5
Accuracy of time to treatment estimates in the CRASH-3 clinical trial: impact on the trial resultsCited by: 3
Author(s): Raoul Mansukhani, Lauren Frimley, Haleema Shakur-Still, Linda D. Sharples, Ian Roberts
Software Mentions: 1
Published: over 4 years ago
10.5696/2156-9614-10.27.200913
Material and Substance Flow Analysis of Used Lead Acid Batteries in Nigeria: Implications for Recovery and Environmental QualityCited by: 0
Author(s): D.T. Ogundele, Mary B. Ogundiran, Joshua O. Babayemi, Manis Kumar Jha
Software Mentions: 1
Published: about 4 years ago
10.1155/2021/7799100
Micro Expression Recognition via Dual-Stream Spatiotemporal Attention NetworkCited by: 9
Author(s): Yan Wang, Yikun Huang, Can Liu, Xiaoying Gu, Dandan Yang, Shuopeng Wang, Zhang Bo
Software Mentions: 1
Published: about 3 years ago
10.3390/ijerph17197229
Material Flows and Greenhouse Gas Emissions Reduction Potential of Decentralized Composting in Sub-Saharan Africa: A Case Study in Tiassalé, Côte d’IvoireCited by: 11
Author(s): Dotanhan Yeo, Kouassi Dongo, Adeline Mertenat, Phillipp Lüssenhop, Ina Körner, Christian Zurbrügg
Software Mentions: 1
Published: about 4 years ago
10.3390/ijerph18041373
Bayesian Weighted Sums: A Flexible Approach to Estimate Summed Mixture EffectsCited by: 6
Author(s): Ghassan B. Hamra, Richard F. MacLehose, Lisa Croen, Elizabeth M. Kauffman, Craig J. Newschaffer
Software Mentions: 1
Published: almost 4 years ago
10.1111/jiec.12088
The Copper Balance of CitiesCited by: 27
Author(s): Ulrich Kral, Chih‐Yi Lin, Katharina Kellner, Hwong‐Wen Ma, Paul H. Brunner
Software Mentions: 1
Published: almost 11 years ago