bioconductor: SNPRelate | Projects

10.3390/ijms21186700

Genetic and Methylome Variation in Turkish Brachypodium Distachyon Accessions Differentiate Two Geographically Distinct Subpopulations
Cited by: 13
Author(s): Aleksandra Skalska, Christoph Stritt, Michele Wyler, H. Williams, Martin Vickers, Jungong Han, Metin Tuna, Gülsemin Savaş Tuna, Karolina Susek, Martin Swain, Rafał Wóycicki, Saurabh Chaudhary, Fiona Corke, John H. Doonan, Anne Roulin, Robert Hasterok, Luis A. J. Mur
Software Mentions: 3
Published: about 4 years ago

10.1371/journal.pgen.1007989

Genetics of adaptation in modern chicken
Cited by: 67
Author(s): Saber Qanbari, Carl-Johan Rubin, Khurram Maqbool, Steffen Weigend, Annett Weigend, Johannes Geibel, Susanne Kerje, Christine Wurmser, A. Townsend Peterson, I. Lehr Brisbin, R. Preisinger, R. Fries, Henner Simianer, Leif Andersson
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pgen.1005059

Genome-Wide Association Studies in Dogs and Humans Identify ADAMTS20 as a Risk Variant for Cleft Lip and Palate
Cited by: 80
Author(s): Zena Wolf, Harrison Brand, John R. Shaffer, Elizabeth J. Leslie, Boaz Arzi, Cali E. Willet, Timothy C. Cox, Toby McHenry, Narayan Nicole, Eleanor Feingold, Wang Xioajing, Sliskovic Saundra, Nili Karmi, Noa Safra, Carla Sanchez, Frederic W.‐B. Deleyiannis, Jeffrey C. Murray, Claire M. Wade, Mary L. Marazita, Danika L. Bannasch
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0196325

Population structure in Argentina
Cited by: 36
Author(s): Marina Muzzio, Josefina María Brenda Motti, Paula B. Paz Sepúlveda, Muh-Ching Yee, Thomas F. Cooke, Maria Rita de Morais Chaves Santos, Virgínia Ramallo, Emma Alfaro, José Edgardo Dipierri, Graciela Bailliet, Cláudio M. Bravi, Carlos D. Bustamante, Eimear E. Kenny
Software Mentions: 2
Published: over 6 years ago

10.1534/g3.118.200779

Medaka Population Genome Structure and Demographic History Described via Genotyping-by-Sequencing
Cited by: 12
Author(s): Takafumi Katsumura, Shoji Oda, Hiroshi Mikami, Hiroki Oota
Software Mentions: 2
Published: almost 6 years ago

10.3390/ani11010241

Identification of Target Chicken Populations by Machine Learning Models Using the Minimum Number of SNPs
Cited by: 8
Author(s): Dongwon Seo, Sunghyun Cho, Prabuddha Manjula, Na Young Choi, Young-Kuk Kim, Yeong Jun Koh, Seung Hwan Lee, Hyung-Yong Kim, Jun Heon Lee
Software Mentions: 2
Published: over 3 years ago

10.3389/fgene.2017.00045

Finding a Needle in a Haystack: Distinguishing Mexican Maize Landraces Using a Small Number of SNPs
Cited by: 11
Author(s): José Luis Caldú-Primo, Alicia Mastretta‐Yanes, Ana Wegier, Daniel Piñero
Software Mentions: 2
Published: over 7 years ago

10.1098/rspb.2018.0206

Evolution of genomic variation in the burrowing owl in response to recent colonization of urban areas
Cited by: 40
Author(s): Jacob C. Mueller, Heiner Kuhl, Stefan Boerno, José Luis Tella, Martina Carrete, Bart Kempenaers
Software Mentions: 2
Published: over 6 years ago

10.1186/s12864-016-2568-7

Association analysis for disease resistance to Fusarium oxysporum in cape gooseberry (Physalis peruviana L)
Cited by: 32
Author(s): Jaime A. Osorio-Guarín, Felix E. Enciso-Rodríguez, Carolina González, Noé Fernández-Pozo, Lukas A. Mueller, Luz Stella Barrero
Software Mentions: 2
Published: over 8 years ago

10.1038/s41597-021-00834-w

Genetic variation among 481 diverse soybean accessions, inferred from genomic re-sequencing
Cited by: 33
Author(s): Babu Valliyodan, Anne V. Brown, Juexin Wang, Gunvant Patil, Yang Liu, Paul I. Otyama, Rex T. Nelson, Tri D. Vuong, Qijian Song, Theresa A. Musket, R Wagner, Pradeep Reddy Marri, Sam Reddy, Allen Sessions, Xiaolei Wu, David Grant, Philipp E. Bayer, Manish Roorkiwal, Rajeev K. Varshney, Xin Liu, David Edwards, Dong Xu, Trupti Joshi, Steven B. Cannon, Henry T. Nguyen
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pone.0173784

Common and rare exonic MUC5B variants associated with type 2 diabetes in Han Chinese
Cited by: 10
Author(s): Guanjie Chen, Zhenjian Zhang, Sally N. Adebamowo, Guozheng Liu, Adebowale Adeyemo, Yanxun Zhou, Ayo P. Doumatey, Chuntao Wang, Jie Zhou, Wenqiang Yan, Daniel Shriner, Fasil Tekola‐Ayele, Amy R. Bentley, Congqing Jiang, Charles N. Rotimi
Software Mentions: 2
Published: over 7 years ago

10.1038/srep16894

Resequencing of the common marmoset genome improves genome assemblies and gene-coding sequence analysis
Cited by: 31
Author(s): Kengo Sato, Yoshio Kuroki, Wakako Kumita, Asao Fujiyama, Atsushi Toyoda, Jun Kawai, Atsushi Iriki, Erika Sasaki, Hideyuki Okano, Yasubumi Sakakibara
Software Mentions: 2
Published: almost 9 years ago

10.1186/s12885-019-5628-y

The association of germline variants with chronic lymphocytic leukemia outcome suggests the implication of novel genes and pathways in clinical evolution
Cited by: 5
Author(s): Adrián Mosquera Orgueira, Beatriz Antelo Rodríguez, Natalia Alonso Vence, José Ángel Díaz Arias, Nicolas Varela, Manuel Pérez‐Encinas, Catarina Allegue Toscano, Elena M. Seco, Ángel Carracedo, José Luis Bello López
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2019.02792

Whole Genome Re-sequencing Reveals Natural Variation and Adaptive Evolution of Phytophthora sojae
Cited by: 31
Author(s): Xiong Zhang, Bo Liu, Fen Zou, Danyu Shen, Zhiyuan Yin, Rongbo Wang, Feng He, Yuanchao Wang, Brett M. Tyler, Wei Fan, Wanqiang Qian, Daolong Dou
Software Mentions: 2
Published: almost 5 years ago

10.3390/ijerph18126215

Genetic Variation and Cardiovascular Risk Factors: A Cohort Study on Migrants from the Former Soviet Union and a Native German Population
Cited by: 1
Author(s): Marianne Huebner, Daniela Börnigen, Andreas Deckert, Rolf Holle, Christa Meisinger, Martina Müller‐Nurasyid, Annette Peters, Wolfgang Rathmann, Heiko Becher
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-017-12778-6

Whole genome sequencing-based association study to unravel genetic architecture of cooked grain width and length traits in rice
Cited by: 40
Author(s): Gopal Misra, Saurabh Badoni, Roslen Anacleto, Andreas Graner, Nickolai Alexandrov, Nese Sreenivasulu
Software Mentions: 2
Published: about 7 years ago

10.1371/journal.pone.0238383

Optimization of the genotyping‐by‐sequencing SNP calling for diversity analysis in cape gooseberry (Physalis peruviana L.) and related taxa
Cited by: 4
Author(s): Felix E. Enciso-Rodríguez, Jaime A. Osorio-Guarín, Gina A. Garzón-Martínez, Paola Delgadillo-Durán, Luz Stella Barrero
Software Mentions: 2
Published: about 4 years ago

10.1038/s41598-021-98934-5

Genomic background selection to reduce the mutation load after random mutagenesis
Cited by: 8
Author(s): Nirosha L. Karunarathna, Dilan S. R. Patiranage, Hans‐Joachim Harloff, Niharika Sashidhar, Christian Jung
Software Mentions: 2
Published: about 3 years ago

10.1186/1471-2164-15-162

SNPhylo: a pipeline to construct a phylogenetic tree from huge SNP data
Cited by: 366
Author(s): Tae Ho Lee, Hui Guo, Xiyin Wang, Changsoo Kim, Andrew H. Paterson
Software Mentions: 2
Published: over 10 years ago

10.1038/s41598-018-31081-6

No association between resistance mutations, empiric antibiotic, and mortality in ceftriaxone-resistant Escherichia coli and Klebsiella pneumoniae bacteremia
Cited by: 7
Author(s): Shi Thong Heng, Swaine L. Chen, Joshua Wong, David C. Lye, Tat Ming Ng
Software Mentions: 2
Published: about 6 years ago

10.1186/s12863-016-0416-z

Local and global patterns of admixture and population structure in Iranian native cattle
Cited by: 18
Author(s): Karim Karimi, Eva Strucken, Nasir Moghaddar, Mohammad Ferdosi, Ali Esmailizadeh, Cedric Gondro
Software Mentions: 2
Published: about 8 years ago

10.1038/s41598-019-42885-5

Evaluation of a Chicken 600K SNP genotyping array in non-model species of grouse
Cited by: 6
Author(s): Piotr Minias, Peter O. Dunn, Linda A. Whittingham, Jeff Johnson, Sara J. Oyler‐McCance
Software Mentions: 2
Published: over 5 years ago

10.1186/1471-2164-14-877

Unraveling the genetic architecture of subtropical maize (Zea mays L.) lines to assess their utility in breeding programs
Cited by: 18
Author(s): Nepolean Thirunavukkarasu, Firoz Hossain, Kaliyugam Shiriga, Swati Mittal, Kanika Arora, Abhishek Rathore, Sweta Mohan, Trushar Shah, R.C. Sharma, Pottekatt Mohanlal Namratha, Amitha S V C R Mithra, Trilochan Mohapatra, H. S. Gupta
Software Mentions: 2
Published: almost 12 years ago

10.1111/eva.12624

Genetic diversity and relationship between domesticated rye and its wild relatives as revealed through genotyping‐by‐sequencing
Cited by: 47
Author(s): Mona Schreiber, Axel Himmelbach, Andreas Börner, Martin Mascher
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-019-45895-5

Comparative transcriptome analysis of cultivated and wild seeds of Salvia hispanica (chia)
Cited by: 22
Author(s): Pablo Peláez, Domancar Orona‐Tamayo, Salvador Montes‐Hernández, María Elena Valverde, Octavio Paredes‐López, Angélica Cibrián-Jaramillo
Software Mentions: 2
Published: over 5 years ago

10.3390/genes11020165

Chromosome and Genome Divergence between the Cryptic Eurasian Malaria Vector-Species Anopheles messeae and Anopheles daciae
Cited by: 15
Author(s): Anastasia N. Naumenko, Dmitriy A. Karagodin, Andrey A. Yurchenko, Anton V. Moskaev, Olga Martı́n, Э. М. Баричева, Igor V. Sharakhov, М. I. Gordeev, Maria V. Sharakhova
Software Mentions: 2
Published: over 4 years ago

10.3389/fpls.2020.579529

Classification of Grain Amaranths Using Chromosome-Level Genome Assembly of Ramdana, A. hypochondriacus
Cited by: 5
Author(s): Saptarathi Deb, Suvratha Jayaprasad, Samathmika Ravi, Kanchan Rao, Saurabh Whadgar, Nivedita Hariharan, Swati Dixit, Meeta Sunil, Bibha Choudhary, Piergiorgio Stevanato, Eswarayya Ramireddy, Subhashini Srinivasan
Software Mentions: 2
Published: almost 4 years ago

10.1038/s41598-019-54715-9

Population genomics of two congeneric Palaearctic shorebirds reveals differential impacts of Quaternary climate oscillations across habitats types
Cited by: 10
Author(s): Hui Zhen Tan, Elize Y. X. Ng, Qian Tang, Gary Allport, Justin J. F. J. Jansen, Pavel S. Tomkovich, Frank E. Rheindt
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41598-020-64031-2

Common genetic variation in obesity, lipid transfer genes and risk of Metabolic Syndrome: Results from IDEFICS/I.Family study and meta-analysis
Cited by: 21
Author(s): Rajini Nagrani, Ronja Foraita, Francesco Gianfagna, Licia Iacoviello, Staffan Mårild, Nathalie Michels, Dénes Molnár, Luís A. Moreno, Paola Russo, Toomas Veidebaum, Wolfgang Ahrens, Manuela Marron
Software Mentions: 2
Published: over 4 years ago

10.1007/s13258-018-0677-1

Genetic structure of six cattle populations revealed by transcriptome-wide SNPs and gene expression
Cited by: 5
Author(s): Wei Wang, Huai Wang, Hui Tang, Jia Gan, Changgeng Shi, Qing Lu, Donghui Fang, Jun Yi, Maozhong Fu
Software Mentions: 2
Published: over 6 years ago

10.1186/s12864-020-07217-2

GCViT: a method for interactive, genome-wide visualization of resequencing and SNP array data
Cited by: 4
Author(s): Andrew Wilkey, Anne V. Brown, Steven B. Cannon, Ethalinda K. S. Cannon
Software Mentions: 2
Published: almost 4 years ago

10.1186/s12711-021-00657-8

Long-range linkage disequilibrium in French beef cattle breeds
Cited by: 7
Author(s): Abdelmajid El Hou, Dominique Rocha, Eric Venot, Véronique Blanquet, Romain Philippe
Software Mentions: 2
Published: about 3 years ago

10.1186/s12864-015-2255-0

Population genomics of pearl millet (Pennisetum glaucum (L.) R. Br.): Comparative analysis of global accessions and Senegalese landraces
Cited by: 41
Author(s): Zhenbin Hu, Bassirou Mbacké, Ramasamy Perumal, Mame Codou Guèye, Ousmane Sy, Sophie Bouchet, P. V. Vara Prasad, Geoffrey P. Morris
Software Mentions: 2
Published: almost 9 years ago

10.15252/emmm.202114133

HSD17B7 gene in self‐renewal and oncogenicity of keratinocytes from Black versus White populations
Cited by: 8
Author(s): Xiaoying Xu, Beatrice Tassone, Paola Ostano, Atul Katarkar, Tatiana Proust, Jean-Marc Joseph, Chiara Riganti, Giovanna Chiorino, Zoltán Kutalik, Karine Lefort, G. Paolo Dotto
Software Mentions: 2
Published: over 3 years ago

10.1002/ece3.4651

Dissecting a potential spandrel of adaptive radiation: Body depth and pectoral fin ecomorphology coevolve in Lake Malawi cichlid fishes
Cited by: 14
Author(s): C. Darrin Hulsey, Roi Holzman, Axel Meyer
Software Mentions: 2
Published: almost 6 years ago

10.1016/j.cub.2017.12.041

Maternal Inheritance of a Single Somatic Animal Cell Displayed by the Bacteriocyte in the Whitefly Bemisia tabaci
Cited by: 52
Author(s): Jing Luan, Xuepeng Sun, Zhangjun Fei, Angela E. Douglas
Software Mentions: 2
Published: over 6 years ago

10.3389/fpls.2019.00544

A Comparison of Mainstream Genotyping Platforms for the Evaluation and Use of Barley Genetic Resources
Cited by: 48
Author(s): Benoît Darrier, Joanne Russell, Sara Giulia Milner, Pete E. Hedley, Paul Shaw, Malcolm Macaulay, Luke Ramsay, Claire Halpin, Martin Mascher, Delphine Fleury, Peter Langridge, Nils Stein, Robbie Waugh
Software Mentions: 2
Published: over 5 years ago

10.7717/peerj.5462

Contrasting gene flow at different spatial scales revealed by genotyping-by-sequencing inIsocladus armatus, a massively colour polymorphic New Zealand marine isopod
Cited by: 17
Author(s): Sarah J. Wells, James Dale
Software Mentions: 2
Published: about 6 years ago

10.1128/genomeA.01066-17

Draft Genome Sequence of a Rare Pigmented Mycobacterium avium subsp. paratuberculosis Type C Strain
Cited by: 0
Author(s): Pedro Barbosa, Célia Leão, Anabel Usié, Ana Amaro, Ana Botelho, Carlos Pinto, João Inácio, Karen Stevenson, A. M. Ramos
Software Mentions: 2
Published: almost 7 years ago

10.1002/ece3.5826

Strong phenotypic divergence in spite of low genetic structure in the endemic Mangrove Warbler subspecies ( Setophaga petechia xanthotera ) of Costa Rica
Cited by: 4
Author(s): Tânia Chavarría-Pizarro, Juan Pablo Gómez, Judit Ungvari‐Martin, Rachael A. Bay, Michael M. Miyamoto, Rebecca T. Kimball
Software Mentions: 2
Published: almost 5 years ago

10.7717/peerj.11425

Population structure, adaptation and divergence of the meadow spittlebug, Philaenus spumarius (Hemiptera, Aphrophoridae), revealed by genomic and morphological data
Cited by: 8
Author(s): Sofia G. Seabra, Ana S. B. Rodrigues, Sara E. Silva, Ana Carina Neto, Francisco Pina‐Martins, Eduardo Marabuto, Vinton Thompson, Michael R. Wilson, Selçuk Yurtsever, Antti Halkka, María Teresa Rebelo, Paulo A. V. Borges, J. A. Quartau, Chris D. Jiggins, Octávio S. Paulo
Software Mentions: 2
Published: over 3 years ago

10.1186/s13059-020-01980-x

Diverse genetic mechanisms underlie worldwide convergent rice feralization
Cited by: 47
Author(s): Jie Qiu, Jia Lu, Dongya Wu, Xifang Weng, Lijuan Chen, Jian Sun, Meihong Chen, Limin Mao, Bowen Jiang, Chu-Yu Ye, Guilherme Menegol Turra, Longbiao Guo, Guoyou Ye, Qian Zhu, Toshiyuki Imaizumi, Beng Kah Song, Laura Scarabel, Aldo Merotto, Kenneth M. Olsen, Longjiang Fan
Software Mentions: 2
Published: over 4 years ago

10.1186/s13059-020-02217-7

Resequencing of global Tartary buckwheat accessions reveals multiple domestication events and key loci associated with agronomic traits
Cited by: 58
Author(s): Kaixuan Zhang, Ming He, Yu Fan, Hui Zhao, Bin Gao, Keli Yang, Faliang Li, Yu Tang, Qiang Gao, Tao Lin, Muriel Quinet, Dagmar Janovská, Vladimir Meglič, J. Kwiatkowski, О. И. Романова, Nikhil K. Chrungoo, Tatsuro Suzuki, Zlata Luthar, Mateja Germ, Sun–Hee Woo, Milen I. Georgiev, Meiliang Zhou
Software Mentions: 2
Published: over 3 years ago

10.1111/eva.13192

Conserving the genetic diversity of condemned populations: Optimizing collections and translocation
Cited by: 13
Author(s): Jason G. Bragg, Jia‐Yee S. Yap, Trevor Wilson, Enhua Lee, Maurizio Rossetto
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pntd.0005752

Different but overlapping populations of Strongyloides stercoralis in dogs and humans—Dogs as a possible source for zoonotic strongyloidiasis
Cited by: 96
Author(s): Tegegn G. Jaleta, Siyu Zhou, Felix Bemm, Fabian Schär, Virak Khieu, Sinuon Muth, Peter Odermatt, James B. Lok, Adrian Streit
Software Mentions: 2
Published: about 7 years ago

10.1371/journal.pgen.1005633

Combined Genetic and Genealogic Studies Uncover a Large BAP1 Cancer Syndrome Kindred Tracing Back Nine Generations to a Common Ancestor from the 1700s
Cited by: 74
Author(s): Michele Carbone, Erin Flores, Mitsuru Emi, Todd A. Johnson, Tatsuhiko Tsunoda, Dusty Behner, Harriet Hoffman, Mary Hesdorffer, Masaki Nasu, Andrea Napolitano, Amy Powers, Michael Minaai, Francine Baumann, Peter Bryant-Greenwood, Olivia Lauk, Michaela B. Kirschner, Walter Weder, Isabelle Opitz, Harvey I. Pass, Giovanni Gaudino, Sandra Pastorino, Haining Yang
Software Mentions: 2
Published: almost 9 years ago

10.1371/journal.pone.0188920

Whole genome sequencing of Oryza sativa L. cv. Seeragasamba identifies a new fragrance allele in rice
Cited by: 21
Author(s): Ganigara Bindusree, Purushothaman Natarajan, Sukesh Kalva, Madasamy Parani
Software Mentions: 2
Published: almost 7 years ago

10.3389/fgene.2021.655707

RNA-Seq Data for Reliable SNP Detection and Genotype Calling: Interest for Coding Variant Characterization and Cis-Regulation Analysis by Allele-Specific Expression in Livestock Species
Cited by: 22
Author(s): Frédéric Jehl, Fabien Degalez, Maria Bernard, Frédéric Lecerf, Laëtitia Lagoutte, Colette Désert, Manon Coulée, Olivier Bouchez, Sophie Leroux, Behnam Abasht, Michèle Tixier‐Boichard, Bertrand Bed’Hom, Thierry Burlot, David Gourichon, Philippe Bardou, Hervé Acloque, Sylvain Foissac, Sarah Djebali, Elisabetta Giuffra, Tatiana Zerjal, Frédérique Pitel, Christophe Klopp, Sandrine Lagarrigue
Software Mentions: 2
Published: over 3 years ago

10.3389/fgene.2020.558762

Association of the Lactase Persistence Haplotype Block With Disease Risk in Populations of European Descent
Cited by: 3
Author(s): Shannon E K Joslin, Blythe Durbin‐Johnson, Monica Britton, Matthew L. Settles, Ian F Korf, Danielle G. Lemay
Software Mentions: 2
Published: almost 4 years ago

10.1111/eva.13271

The different fates of two Asian horseshoe crab species with different dispersal abilities
Cited by: 2
Author(s): Qian Tang, Prashant Shingate, Yusli Wardiatno, Akbar John, Boon Hui Tay, Y. C. Tay, L. F. Yap, Jasmin Lim, Henry H.Y. Tong, Karenne Tun, Byrappa Venkatesh, Frank E. Rheindt
Software Mentions: 2
Published: about 3 years ago

10.1371/journal.pone.0223441

Whole genome resequencing of watermelons to identify single nucleotide polymorphisms related to flesh color and lycopene content
Cited by: 14
Author(s): Saminathan Subburaj, Kayoun Lee, Yongsam Jeon, Luhua Tu, Gilwoo Son, SuBok Choi, Yong-Pyo Lim, Cecilia McGregor, Geung–Joo Lee
Software Mentions: 2
Published: almost 5 years ago

10.1111/eva.12881

Population genomics supports clonal reproduction and multiple independent gains and losses of parasitic abilities in the most devastating nematode pest
Cited by: 20
Author(s): Georgios Koutsovoulos, Eder Marques, Marie-Jeanne Arguel, Laurent Duret, Andressa Cristina Zamboni Machado, R. M. D. G. Carneiro, Djampa Kozlowski, Marc Bailly‐Bechet, Philippe Castagnone‐Sereno, Érika Valéria Saliba Albuquerque, Étienne Danchin
Software Mentions: 1
Published: almost 5 years ago

10.1111/eva.13149

Using historical genome‐wide DNA to unravel the confused taxonomy in a songbird lineage that is extinct in the wild
Cited by: 9
Author(s): Pratibha Baveja, Kritika M. Garg, Balaji Chattopadhyay, Keren R. Sadanandan, Dewi M. Prawiradilaga, Pramana Yuda, Jessica G.H. Lee
Software Mentions: 1
Published: almost 4 years ago

10.1186/s12864-019-5811-1

Identification of selection signatures involved in performance traits in a paternal broiler line
Cited by: 20
Author(s): Octávio Augusto Costa Almeida, Gabriel Costa Monteiro Moreira, Fernanda Marcondes de Rezende, Clarissa Boschiero, J. de O. Peixoto, A. M. G. Ibelli, Mônica Corrêa Ledur, Francisco José de Novais, Luiz Lehmann Coutinho
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0152476

Identification of Non-HLA Genes Associated with Celiac Disease and Country-Specific Differences in a Large, International Pediatric Cohort
Cited by: 44
Author(s): Ashok Sharma, Xiang Liu, David Hadley, William Hagopian, Edwin Liu, Weimin Chen, Suna Önengüt-Gümüşcü, Ville Simell, Marian Rewers, Anette‐G. Ziegler, Åke Lernmark, Olli Simell, Jorma Toppari, Jeffrey P. Krischer, Beena Akolkar, Stephen S. Rich, Daniel Agardh, Jin‐Xiong She
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-021-84732-6

Genetic variation and population structure in China summer maize germplasm
Cited by: 13
Author(s): Guoping Shu, Gangqiang Cao, Niannian Li, Aifang Wang, Fang Wei, Ting Li, Yang Li, Yunbi Xu, Yibo Wang
Software Mentions: 1
Published: over 3 years ago

10.1111/eva.12490

Population genomics analyses of European ibex species show lower diversity and higher inbreeding in reintroduced populations
Cited by: 54
Author(s): Christine Grossen, Iris Biebach, Samer Angelone, Lukas F. Keller, Daniel Croll
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0091237

Sardinians Genetic Background Explained by Runs of Homozygosity and Genomic Regions under Positive Selection
Cited by: 37
Author(s): Cornelia Di Gaetano, Giovanni Fiorito, Maria Francesca Ortu, Fabio Rosa, Simonetta Guarrera, Barbara Pardini, Daniele Cusi, Francesca Frau, Cristina Barlassina, Chiara Troffa, Giuseppe Argiolas, Roberta Zaninello, Giovanni Fresu, Nicola Glorioso, Alberto Piazza, Giuseppe Matullo
Software Mentions: 1
Published: over 10 years ago

10.3389/fgene.2020.550215

Genetic Diversity of Cameroon Cattle and a Putative Genomic Map for Resistance to Bovine Tuberculosis
Cited by: 2
Author(s): Rebecca Callaby, Robert F. Kelly, Stella Mazeri, Franklyn Egbe, Lindert Benedictus, Emily L. Clark, Andrea Doeschl‐Wilson, Barend Mark de Clare Bronsvoort, Mazdak Salavati, Adrian Muwonge
Software Mentions: 1
Published: almost 4 years ago

10.3389/fgene.2014.00352

Controlling for population structure and genotyping platform bias in the eMERGE multi-institutional biobank linked to electronic health records
Cited by: 14
Author(s): David R. Crosslin, Gerard Tromp, Amber Burt, Daniel S. Kim, Shefali S. Verma, Anastasia Lucas, Yuki Bradford, Dana C. Crawford, Sebastian M. Armasu, John A. Heit, M. Geoffrey Hayes, Helena Kuivaniemi, Marylyn D. Ritchie, Gail P. Jarvik, Mariza de Andrade
Software Mentions: 1
Published: almost 10 years ago

10.1186/s12864-015-1620-3

A multi-SNP association test for complex diseases incorporating an optimal P-value threshold algorithm in nuclear families
Cited by: 12
Author(s): Yiting Wang, Pei-Yuan Sung, Peng-Lin Lin, Yifeng Yu, Ren‐Hua Chung
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pntd.0005253

Genome-Wide Analyses of Individual Strongyloides stercoralis (Nematoda: Rhabditoidea) Provide Insights into Population Structure and Reproductive Life Cycles
Cited by: 26
Author(s): Taisei Kikuchi, Akinori Hino, Teruhisa Tanaka, Myo Pa Pa Thet Hnin Htwe Aung, Tanzila Afrin, Eiji Nagayasu, Ryusei Tanaka, Miwa Higashiarakawa, Kyu Kyu Win, Tetsuya Hirata, Wah Win Htike, Jiro Fujita, Haruhiko Maruyama
Software Mentions: 1
Published: almost 8 years ago

10.3390/ijms21103542

Single-Nucleotide Polymorphisms (SNPs) Both Associated with Hypertension and Contributing to Accelerated-Senescence Traits in OXYS Rats
Cited by: 5
Author(s): V. A. Devyatkin, Olga E. Redina, Natalia A. Muraleva, N. G. Kolosova
Software Mentions: 1
Published: over 4 years ago

10.1534/g3.115.017749

BAC-End Sequence-Based SNP Mining in Allotetraploid Cotton (Gossypium) Utilizing Resequencing Data, Phylogenetic Inferences, and Perspectives for Genetic Mapping
Cited by: 19
Author(s): Amanda M. Hulse‐Kemp, Hamid Ashrafi, Karl Stoffel, Xiuting Zheng, Christopher Saski, Brian E. Scheffler, David D. Fang, Z. Jeffrey Chen, Allen Van Deynze, David M. Stelly
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pgen.1008267

Artificial selection on GmOLEO1 contributes to the increase in seed oil during soybean domestication
Cited by: 65
Author(s): Dan Zhang, Hengyou Zhang, Zhenbin Hu, Shanshan Chu, Kaiye Yu, Lingling Lv, Yuming Yang, Xiangqian Zhang, Xi Chen, Guizhen Kan, Yang Tang, Yong-Qiang Charles An, Deyue Yu
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pgen.1008414

A candidate gene analysis and GWAS for genes associated with maternal nondisjunction of chromosome 21
Cited by: 24
Author(s): Jonathan M. Chernus, Emily G. Allen, Zhen Zeng, Eva R. Hoffman, Terry Hassold, Eleanor Feingold, Stephanie L. Sherman
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pgen.1008926

A new domestic cat genome assembly based on long sequence reads empowers feline genomic medicine and identifies a novel gene for dwarfism
Cited by: 69
Author(s): R. Buckley, Brian W. Davis, Wesley Brashear, Fabiana Farias, Kei Kuroki, Tina Graves, La Deana W. Hillier, Milinn Kremitzki, Gang Li, Rondo Middleton, Patrick Minx, Chad Tomlinson, Leslie A. Lyons, William J. Murphy, Wesley C. Warren
Software Mentions: 1
Published: almost 4 years ago

10.3390/plants8100425

Gas Chromatography-Mass Spectrometry and Single Nucleotide Polymorphism-Genotype-By-Sequencing Analyses Reveal the Bean Chemical Profiles and Relatedness of Coffea canephora Genotypes in Nigeria
Cited by: 1
Author(s): Chinyere F. Anagbogu, Christopher Olumuyiwa Ilori, Ranjana Bhattacharjee, Olufemi O. Olaniyi, Diane M. Beckles
Software Mentions: 1
Published: almost 5 years ago

10.14814/phy2.14886

Tensin 1 ( TNS1 ) is a modifier gene for low body mass index (BMI) in homozygous [ F508del ]CFTR patients
Cited by: 0
Author(s): Nathan I. Walton, Xijun Zhang, Anthony R. Soltis, Joshua Starr, Clifton L. Dalgard, Matthew D. Wilkerson, Douglas Conrad, Harvey B. Pollard
Software Mentions: 1
Published: over 3 years ago

10.1534/g3.120.401704

Estimation of the SNP Mutation Rate in Two Vegetatively Propagating Species of Duckweed
Cited by: 16
Author(s): George Sandler, Magdalena P. Bartkowska, Aneil F. Agrawal, Stephen I. Wright
Software Mentions: 1
Published: almost 4 years ago

10.3390/genes10030187

Population Genomics and Structure of the Critically Endangered Mariana Crow (Corvus kubaryi)
Cited by: 10
Author(s): Nandadevi Córtes-Rodríguez, Michael G. Campana, Lainie Berry, Sarah K. Faegre, Scott R. Derrickson, Renee Robinette Ha, Rebecca B. Dikow, Christian Rutz, Robert C. Fleischer
Software Mentions: 1
Published: over 5 years ago

10.3390/genes12060858

Genotyping-by-Sequencing-Based Genome-Wide Association Studies of Fusarium Wilt Resistance in Radishes (Raphanus sativus L.)
Cited by: 8
Author(s): O New Lee, Hyunjin Koo, Jae‐Woong Yu, Han Yong Park
Software Mentions: 1
Published: over 3 years ago

10.1186/s40246-018-0156-4

Nonparametric approaches for population structure analysis
Cited by: 21
Author(s): Luluah Al-Husain, Alaaeldin M. Hafez
Software Mentions: 1
Published: over 6 years ago

10.3390/pathogens10020100

Community Parameters and Genome-Wide RAD-Seq Loci of Ceratothoa oestroides Imply Its Transfer between Farmed European Sea Bass and Wild Farm-Aggregating Fish
Cited by: 1
Author(s): Ivona Mladineo, Jerko Hrabar, Željka Trumbić, Tereza Manousaki, Alexandros Tsakogiannis, John B. Taggart, Costas S. Tsigenopoulos
Software Mentions: 1
Published: over 3 years ago

10.1186/s40575-015-0018-5

Homozygosity mapping and sequencing identify two genes that might contribute to pointing behavior in hunting dogs
Cited by: 11
Author(s): Denis A. Akkad, Wanda M. Gerding, Robin B. Gasser, Jörg T. Epplen
Software Mentions: 1
Published: over 9 years ago

10.1186/s13742-016-0148-z

The whole genome sequences and experimentally phased haplotypes of over 100 personal genomes
Cited by: 20
Author(s): Qing Mao, Serban Ciotlos, Rebecca Yu Zhang, Madeleine Ball, Robert Chin, P. Carnevali, Nina Barua, Staci Nguyen, Misha R. Agarwal, Tom Clegg, Abram Connelly, Ward Vandewege, Alexander Wait Zaranek, Preston W. Estep, George M. Church, Radoje Drmanac, Brock A. Peters
Software Mentions: 1
Published: almost 8 years ago

10.1093/braincomms/fcaa159

Variants in PPP2R2B and IGF2BP3 are associated with higher tau deposition
Cited by: 11
Author(s): Vijay K. Ramanan, Xuewei Wang, Scott A. Przybelski, Sheelakumari Raghavan, Michael G. Heckman, Anthony Batzler, Matthew L. Kosel, Timothy J. Hohman, David S. Knopman, Jonathan Graff‐Radford, Val J. Lowe, Michelle M. Mielke, Clifford R. Jack, Ronald C. Petersen, Owen A. Ross, Prashanthi Vemuri
Software Mentions: 1
Published: almost 5 years ago

10.1093/bioinformatics/bty946

Pair Matcher (PaM): fast model-based optimization of treatment/case-control matches
Cited by: 10
Author(s): Eran Elhaik, Desmon̄d Ryan
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41438-020-00367-0

Natural variation and evolutionary dynamics of transposable elements in Brassica oleracea based on next-generation sequencing data
Cited by: 6
Author(s): Zhen Liu, Miao Fan, Erkui Yue, Yu Liu, Ruiyan Tao, Haiming Xu, Ming-Hua Duan, Jian-Hong Xu
Software Mentions: 1
Published: about 4 years ago

10.1186/s12919-016-0056-3

Estimating relationships between phenotypes and subjects drawn from admixed families
Cited by: 4
Author(s): Elizabeth Blue, Lisa Brown, Matthew P. Conomos, Jennifer L. Kirk, Alejandro Q. Nato, Alice B. Popejoy, Jesse D. Raffa, John Michael O. Rañola, Timothy A. Thornton
Software Mentions: 1
Published: about 8 years ago

10.1016/j.humimm.2017.01.006

High resolution HLA haplotyping by imputation for a British population bioresource
Cited by: 25
Author(s): Matt J. Neville, Wanseon Lee, Peter Humburg, Daniel Wong, Martin Barnardo, Fredrik Karpe, Julian C. Knight
Software Mentions: 1
Published: over 7 years ago

10.1186/s12919-016-0019-8

Identification of interactions using model-based multifactor dimensionality reduction
Cited by: 3
Author(s): Damian Gola, Inke R. König
Software Mentions: 1
Published: about 8 years ago

10.1001/jamanetworkopen.2019.11130

A Genetic Approach to the Association Between PCSK9 and Sepsis
Cited by: 21
Author(s): QiPing Feng, Wei‐Qi Wei, Sandip Chaugai, Barbara G. Carranza Leon, Vivian Kawai, Daniel A. Carranza Leon, Lan Jiang, Xue Zhong, Ge Liu, Andrea Ihegword, Christian M. Shaffer, MacRae F. Linton, Cecilia P. Chung, C. Michael Stein
Software Mentions: 1
Published: about 5 years ago

10.1093/hmg/ddx061

Genetic regulation of gene expression in the epileptic human hippocampus
Cited by: 19
Author(s): Nasir Mirza, Richard Appleton, Sasha Burn, Daniel du Plessis, Roderick Duncan, Jibril Osman Farah, Bjarke Feenstra, Anders Hviid, Vivek Josan, Rajiv Mohanraj, Arif Shukralla, Graeme J. Sills, Anthony G Marson, Munir Pirmohamed
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.ppat.1008511

Patient genetics is linked to chronic wound microbiome composition and healing
Cited by: 23
Author(s): Craig D. Tipton, Randall D. Wolcott, Nicholas E. Sanford, Clint L. Miller, Gita A Pathak, Talisa Silzer, Jie Sun, Derek Fleming, Kendra P. Rumbaugh, Todd D. Little, Nicole Phillips, C. Douglas Phillips
Software Mentions: 1
Published: over 4 years ago

10.1038/srep08140

Highlighting nonlinear patterns in population genetics datasets
Cited by: 32
Author(s): Gregorio Alanis-Lobato, Carlo Vittorio Cannistraci, Anders Eriksson, Andrea Manica, Timothy Ravasi
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-017-02125-0

Fast diffusion of domesticated maize to temperate zones
Cited by: 7
Author(s): Xiaolong Li, Yinqiao Jian, Chuanxiao Xie, Yunbi Xu, Cheng Zou
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-017-14196-0

Genetic and phenotypic characterization of the novel mouse substrain C57BL/6N Korl with increased body weight
Cited by: 6
Author(s): Kyung-Min Choi, Jae‐Hoon Jung, Young Min Cho, Kwondo Kim, Mi‐Gyeong Kim, Jin-Ho Kim, Huibae Kim, Hee Jung Shin, Hae Deun Kim, Seung-Tae Chung, Seoae Cho, Myeon-Woo Chung
Software Mentions: 1
Published: almost 7 years ago

10.7554/eLife.15266

Admixture into and within sub-Saharan Africa
Cited by: 109
Author(s): Busby Gbj., Quang Si Le, Muminatou Jallow, Edith Bougama, Valentina Mangano, Lucas Amenga-Etego, Anthony Enimil, Tobias O. Apinjoh, Carolyne Ndila, Alphaxard Manjurano, Vysaul Nyirongo, Ogobara Doumba, Kirk A. Rockett, Dominic P. Kwiatkowski, Spencer Cca., Aaron Vanderwal, A el-Zein, Aceme Nyika, Alieu Mendy, Alistair Miles, A Diss, Angeliki Kerasidou, A Green, Anna E. Jeffreys, Bronwyn MacInnis, C Hughes, Catherine L. Moyes, Christina Hubbart, Claudio Malangone, Claire Potter, Daniel Mead, David E. Barnwell, Dushyanth Jyothi, Eleanor Drury, Elilan Somaskantharajah, Eliza Hilton, Ellen M. Leffler, G. Maslen, George B.J. Busby, Taane G. Clark, Jiannis Ragoussis, Julio García, Jane Rogers, Jantina de Vries, Janie F. Shelton, Jiannis Ragoussis, Jim Stalker, Joanne Rodford, John OʼBrien
Software Mentions: 1
Published: over 8 years ago

10.1093/aob/mcaa032

Unravelling the complex story of intergenomic recombination in ABB allotriploid bananas
Cited by: 20
Author(s): Alberto Cenci, Julie Sardos, Yann Hueber, Guillaume Martin, Catherine Breton, Nicolás Roux, Rony Swennen, Sébastien Carpentier, Mathieu Rouard
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-019-44996-5

Population divergence and gene flow in two East Asian shorebirds on the verge of speciation
Cited by: 11
Author(s): Keren R. Sadanandan, Clemens Küpper, Grace Kah Mun Low, Cheng‐Te Yao, Yue Li, Tao Xu, Frank E. Rheindt, Shaoyuan Wu
Software Mentions: 1
Published: over 5 years ago

10.1186/s40478-021-01154-1

Coping with brain amyloid: genetic heterogeneity and cognitive resilience to Alzheimer’s pathophysiology
Cited by: 15
Author(s): Vijay K. Ramanan, Timothy G. Lesnick, Scott A. Przybelski, Michael G. Heckman, David S. Knopman, Jonathan Graff‐Radford, Val J. Lowe, Mary M. Machulda, Michelle M. Mielke, Clifford R. Jack, Ronald C. Petersen, Owen A. Ross, Prashanthi Vemuri
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-019-52904-0

Carnivores, competition and genetic connectivity in the Anthropocene
Cited by: 6
Author(s): Scott Creel, Göran Spong, Matthew S. Becker, Chuma Simukonda, Anita J. Norman, Bastian Schiffthaler, Clive Chifunte
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-020-64525-z

The polygenic architecture of left ventricular mass mirrors the clinical epidemiology
Cited by: 12
Author(s): Jonathan D. Mosley, Rebecca T. Levinson, Eric Farber‐Eger, Todd L. Edwards, Jacklyn N. Hellwege, Adriana M. Hung, Ayush Giri, Megan M. Shuey, Christian M. Shaffer, Mingjian Shi, Evan L. Brittain, Wendy K. Chung, Iftikhar J. Kullo, Adelaide M. Arruda‐Olson, Gail P. Jarvik, Eric B. Larson, David R. Crosslin, Marc S. Williams, Ken M. Borthwick, Hákon Hákonarson, Joshua C. Denny, Thomas J. Wang, C. Michael Stein, Dan M. Roden, Quinn S. Wells
Software Mentions: 1
Published: over 4 years ago

10.3390/ijms20235915

A Combined Linkage and GWAS Analysis Identifies QTLs Linked to Soybean Seed Protein and Oil Content
Cited by: 38
Author(s): Tengfei Zhang, Tingting Wu, Liwei Wang, Bingjun Jiang, Caixin Zhen, Shan Yuan, Wensheng Hou, Cunxiang Wu, Tianfu Han, Shi Sun
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pone.0130827

Genetic Polymorphisms Associated with Hearing Threshold Shift in Subjects during First Encounter with Occupational Impulse Noise
Cited by: 24
Author(s): Yohann Grondin, Magda E. Bortoni, Rosalinda Sepúlveda, Elisa Ghelfi, Ádám Bartos, Douglas A. Cotanche, Royce E Clifford, Rick A. Rogers
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0191790

Widespread introgression of mountain hare genes into Fennoscandian brown hare populations
Cited by: 26
Author(s): Riikka Levänen, Carl‐Gustaf Thulin, Göran Spong, Jaakko L. O. Pohjoismäki
Software Mentions: 1
Published: over 6 years ago

10.1002/ece3.1398

America's red gold: multiple lineages of cultivated cochineal in Mexico
Cited by: 23
Author(s): Michael G. Campana, Nelly M. Robles García, Noreen Tuross
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0252948

Variation of virulence of five Aspergillus fumigatus isolates in four different infection models
Cited by: 8
Author(s): E. M. Keizer, Iván Valdés, Gabriel Forn-Cuní, Eva Klijn, Annemarie H. Meijer, F Hillman, Han A. B. Wösten, Hans de Cock
Software Mentions: 1
Published: about 3 years ago

10.1371/journal.pone.0122025

Classification and Characterization of Species within the Genus Lens Using Genotyping-by-Sequencing (GBS)
Cited by: 94
Author(s): Melissa M L Wong, Neha Gujaria-Verma, Larissa Ramsay, Huajun Yuan, Carolyn T. Caron, Marwan Diapari, Albert Vandenberg, Kirstin E. Bett
Software Mentions: 1
Published: over 9 years ago

Projects: bioconductor: SNPRelate

Papers Mentioning SNPRelate 204