bioconductor: RnBeads | Projects | Ecosyste.ms: Papers

10.3389/fcell.2021.671302

Evaluating the Consistency of Gene Methylation in Liver Cancer Using Bisulfite Sequencing Data
Cited by: 10
Author(s): Xubin Zheng, Qiong Wu, Haonan Wu, Kwong‐Sak Leung, Man‐Hon Wong, Xueyan Liu, Lixin Cheng
Software Mentions: 2
Published: over 3 years ago

10.1186/s12920-020-00745-6

Genome-wide identification of methylated CpG sites in nongenital cutaneous warts
Cited by: 3
Author(s): Laith N. AL-Eitan, Mansour A. Alghamdi, Amneh H. Tarkhan, Firas Al‐Qarqaz
Software Mentions: 2
Published: over 4 years ago

10.1038/s41598-017-03682-0

DNA methylation changes in endometrium and correlation with gene expression during the transition from pre-receptive to receptive phase
Cited by: 32
Author(s): Viktorija Kukushkina, Vijayachitra Modhukur, Marina Suhorutšenko, Maire Peters, Reedik Mägi, Nilüfer Rahmioğlu, Agne Velthut-Meikas, Signe Altmäe, Francisco J. Esteban, Jaak Vilo, Krina T. Zondervan, Andres Salumets, Triin Laisk-Podar
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-017-03434-0

Identification of differentially methylated BRCA1 and CRISP2 DNA regions as blood surrogate markers for cardiovascular disease
Cited by: 34
Author(s): Geoffrey Istas, Ken Declerck, Maria Pudenz, Katarzyna Szarc vel Szic, Verónica Lendinez-Tortajada, Montserrat León-Latre, Karen Heyninck, Guy Haegeman, José A. Casasnovas, María Téllez-Plaza, Clarissa Gerhäuser, Christian Heiß, Ana Rodriguez-Mateos, Wim Vanden Berghe
Software Mentions: 2
Published: over 7 years ago

10.18632/oncotarget.23639

Characterization and metabolic synthetic lethal testing in a new model of SDH-loss familial pheochromocytoma and paraganglioma
Cited by: 13
Author(s): John A. Smestad, Oksana Hamidi, Lin Wang, Molly Nelson Holte, Fatimah Al Khazal, Luke Erber, Yue Chen, L. James Maher
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41598-017-14314-y

Promoter DNA methylation analysis reveals a novel diagnostic CpG-based biomarker and RAB25 hypermethylation in clear cell renel cell carcinoma
Cited by: 12
Author(s): Yinmin Gu, Yi Ming Zou, Danqing Lei, Yuanjie Huang, Weidong Li, Zengnan Mo, Yanling Hu
Software Mentions: 2
Published: about 7 years ago

10.1186/s12859-016-0910-3

Fast, accurate, and lightweight analysis of BS-treated reads with ERNE 2
Cited by: 11
Author(s): Nicola Prezza, Francesco Vezzi, Max Käller, Alberto Policriti
Software Mentions: 2
Published: almost 9 years ago

10.1186/s13148-017-0314-x

Genome-wide DNA methylation profile identified a unique set of differentially methylated immune genes in oral squamous cell carcinoma patients in India
Cited by: 37
Author(s): Baidehi Basu, Joyeeta Chakraborty, Aditi Chandra, Atul Katarkar, Jadav Ritesh Kumar Baldevbhai, Debjit Dhar Chowdhury, Jharna Ray, Keya Chaudhuri, Raghunath Chatterjee
Software Mentions: 2
Published: almost 8 years ago

10.3389/fimmu.2020.00194

Rheumatoid Arthritis Patients, Both Newly Diagnosed and Methotrexate Treated, Show More DNA Methylation Differences in CD4+ Memory Than in CD4+ Naïve T Cells
Cited by: 14
Author(s): Kari Guderud, Line Hagen Sunde, Siri Tennebø Flåm, Marthe Thoresen Mæhlen, Maria D Mjaavatten, Siri Lillegraven, Anna‐Birgitte Aga, Ida Marie Evenrød, Ellen Sauar Norli, Bettina Kulle Andreassen, Sören Franzenburg, André Franke, Espen A. Haavardsholm, Simon Rayner, Kristina Gervin, Benedicte A. Lie
Software Mentions: 2
Published: almost 5 years ago

10.1007/s00432-020-03349-w

DNA CpG methylation in sequential glioblastoma specimens
Cited by: 6
Author(s): Zoltán Krabóth, Bence Gálik, Márton Tompa, Béla Kajtár, Péter Urbán, Attila Gyenesei, Attila Miseta, Bernadette Kálmán
Software Mentions: 2
Published: over 4 years ago

10.1186/s13148-021-01002-y

Different methylation signatures at diagnosis in patients with high-risk myelodysplastic syndromes and secondary acute myeloid leukemia predict azacitidine response and longer survival
Cited by: 14
Author(s): Marta Cabezón, Roberto Malinverni, Joan Bargay, Blanca Xicoy, Sílvia Marcé, Ana Garrido, Mar Tormo, Leonor Arenillas, Rosa Coll, Josep Borrás, M.J. Jiménez, Montserrat Hoyos, David Valcárcel, Lourdes Escoda, Ferrán Vall-Llovera, Antoni García, Llorens Font, Elena Rámila, Marcus Buschbeck, Lurdes Zamora
Software Mentions: 2
Published: almost 4 years ago

10.1186/1471-2105-16-S3-A7

Identification and analysis of methylation call differences between bisulfite microarray and bisulfite sequencing data with statistical learning techniques
Cited by: 2
Author(s): Matthias Döring, Gilles Gasparoni, Jasmin Gries, Karl Nordström, Pavlo Lutsik, Jörn Walter, Nico Pfeifer
Software Mentions: 1
Published: almost 10 years ago

10.3389/fnins.2021.738347

Identification of DNA Methylation Changes That Predict Onset of Post-traumatic Stress Disorder and Depression Following Physical Trauma
Cited by: 1
Author(s): Carina Aguilar Martín, Rany Vorn, Martin Schrieber, Chen Lai, Sijung Yun, Hyung-Suk Kim, Jessica Gill
Software Mentions: 1
Published: about 3 years ago

10.1186/s13148-015-0160-7

CpG island methylation profile in non-invasive oral rinse samples is predictive of oral and pharyngeal carcinoma
Cited by: 19
Author(s): Scott M. Langevin, Melissa Eliot, Rondi A. Butler, Agnes Cheong, Xiang Zhang, Michael D. McClean, Devin C. Koestler, Karl T. Kelsey
Software Mentions: 1
Published: almost 9 years ago

10.1186/s13059-017-1182-6

MeDeCom: discovery and quantification of latent components of heterogeneous methylomes
Cited by: 67
Author(s): Pavlo Lutsik, Martin Slawski, Gilles Gasparoni, Nikita Vedeneev, Matthias Hein, Jörn Walter
Software Mentions: 1
Published: over 7 years ago

10.3390/cells9081820

CpG-Islands as Markers for Liquid Biopsies of Cancer Patients
Cited by: 11
Author(s): Maximilian Sprang, Claudia Paret, Joerg Faber
Software Mentions: 1
Published: over 4 years ago

10.3390/cells10030549

Involvement of the Catecholamine Pathway in Glioblastoma Development
Cited by: 4
Author(s): Zoltán Krabóth, Béla Kajtár, Bence Gálik, Attila Gyenesei, Attila Miseta, Bernadette Kálmán
Software Mentions: 1
Published: over 3 years ago

10.1016/j.celrep.2015.02.001

Single-Cell DNA Methylome Sequencing and Bioinformatic Inference of Epigenomic Cell-State Dynamics
Cited by: 356
Author(s): Matthias Farlik, Nathan C. Sheffield, Angelo Nuzzo, Paul Datlinger, Andreas Schönegger, Johanna Klughammer, Christoph Bock
Software Mentions: 1
Published: over 9 years ago

10.1186/s13073-014-0122-2

Comparison of DNA methylation profiles in human fetal and adult red blood cell progenitors
Cited by: 49
Author(s): Samuel Lessard, Mélissa Beaudoin, Karim Benkirane, Guillaume Lettre
Software Mentions: 1
Published: almost 10 years ago

10.3390/cancers13184569

Promoter Hypermethylation Promotes the Binding of Transcription Factor NFATc1, Triggering Oncogenic Gene Activation in Pancreatic Cancer
Cited by: 3
Author(s): Yenan Wu, Lea Kröller, Benchun Miao, Henning Boekhoff, Andrea S. Bauer, Markus W. Büchler, Thilo Hackert, Nathalia A. Giese, Jussi Taipale, Jörg D. Hoheisel
Software Mentions: 1
Published: about 3 years ago

10.1371/journal.pone.0151109

Whole-Genome Saliva and Blood DNA Methylation Profiling in Individuals with a Respiratory Allergy
Cited by: 43
Author(s): Sabine A. S. Langie, Katarzyna Szarc vel Szic, Ken Declerck, Sophie Traen, Gudrun Koppen, Guy Van Camp, Greet Schoeters, Wim Vanden Berghe, Patrick De Boever
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0208699

Exploring the influence from whole blood DNA extraction methods on Infinium 450K DNA methylation
Cited by: 4
Author(s): Hanne Sagsveen Hjorthaug, Kristina Gervin, Petter Mowinckel, Monica Cheng Munthe‐Kaas
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0211917

Identification of epilepsy related pathways using genome-wide DNA methylation measures: A trio-based approach
Cited by: 7
Author(s): Özkan Özdemir, Ece Egemen, Sibel Aylin Uğur İşeri, Uğur Sezerman, Nerses Bebek, Betül Baykan, Uğur Özbek
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.ppat.1004441

Human Cytomegalovirus Drives Epigenetic Imprinting of the IFNG Locus in NKG2Chi Natural Killer Cells
Cited by: 203
Author(s): Merlin V. Luetke-Eversloh, Quirin Hammer, Pawel Durek, Karl Nordström, Gilles Gasparoni, Matthias Pink, Alf Hamann, Jörn Walter, Hyun‐Dong Chang, Jun Dong, Chiara Romagnani
Software Mentions: 1
Published: about 10 years ago

10.1038/srep14540

Infants born large-for-gestational-age display slower growth in early infancy, but no epigenetic changes at birth
Cited by: 16
Author(s): Valentina Chiavaroli, Wayne S. Cutfield, José G. B. Derraik, Zengxiang Pan, Sherry Ngo, Allan Sheppard, Susan Craigie, Peter Stone, Lynn Sadler, Fredrik Ahlsson
Software Mentions: 1
Published: about 9 years ago

10.1038/srep28891

Loss of tumorigenic potential upon transdifferentiation from keratinocytic into melanocytic lineage
Cited by: 6
Author(s): Sabrina Fehrenbach, Daniel Novak, Mathias Bernhardt, Lionel Larribère, Petra Boukamp, Viktor Umansky, Jochen Utikal
Software Mentions: 1
Published: over 8 years ago

10.18632/oncotarget.10792

Methylation of S100A8 is a promising diagnosis and prognostic marker in hepatocellular carcinoma
Cited by: 22
Author(s): Kun Liu, Yuening Zhang, Chengdong Zhang, Qinle Zhang, Jiatong Li, Fei Xiao, Yingfang Li, Ruoheng Zhang, Dongwei Dou, Jiezhen Liang, Jian Qin, Zhidi Lin, Dong Zhao, Min Jiang, Zhenxin Liang, Jie Su, Vanaparthy Pranay Gupta, Miao He, Xiaoli Yang
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-017-02721-0

Differential methylation is associated with non-syndromic cleft lip and palate and contributes to penetrance effects
Cited by: 52
Author(s): Lucas Alvizi, Xiayi Ke, Luciano Abreu Brito, Rimante Seselgyte, Gudrun E. Moore, Philip Stanier, Maria Rita Passos‐Bueno
Software Mentions: 1
Published: over 7 years ago

10.18632/oncotarget.12256

Expression of the TPα and TPβ isoforms of the thromboxane prostanoid receptor (TP) in prostate cancer: clinical significance and diagnostic potential
Cited by: 10
Author(s): Eamon P. Mulvaney, Christine Shilling, Sarah B. Eivers, Antoinette S. Perry, Anders Bjartell, Elaine W. Kay, R. William G. Watson, B. Thérèse Kinsella
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0201066

Identification of Myalgic Encephalomyelitis/Chronic Fatigue Syndrome-associated DNA methylation patterns
Cited by: 32
Author(s): Malav Suchin Trivedi, Elisa Oltra, Leonor Sarría, Natasha Rose, Vladimir Beljanski, Mary A Fletcher, Nancy G. Klimas, Lubov Nathanson
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-019-42553-8

DNA methylation of dopamine-related gene promoters is associated with line bisection deviation in healthy adults
Cited by: 5
Author(s): Judith Schmitz, Robert Kumsta, Dirk Moser, Onur Güntürkün, Sebastian Ocklenburg
Software Mentions: 1
Published: over 5 years ago

10.1002/cam4.1248

Cancer‐testis gene <i><scp>PIWIL</scp>1</i> promotes cell proliferation, migration, and invasion in lung adenocarcinoma
Cited by: 41
Author(s): Kaipeng Xie, Kai Zhang, Jing Kong, Cheng Wang, Yayun Gu, Liang Cheng, Tingting Jiang, Na Qin, Ji‐Bin Liu, Xuejiang Guo, Ran Huo, Mingxi Liu, Hongxia Ma, Juncheng Dai
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-019-54355-z

DNA methylation changes in infants between 6 and 52 weeks
Cited by: 14
Author(s): Ellen Wikenius, Vibeke Moe, Lars Smith, Einar Heiervang, Anders Berglund
Software Mentions: 1
Published: almost 5 years ago

10.1007/s00401-021-02357-5

Epigenetic and gene expression changes of neuronal cells from MSA patients are pronounced in enzymes for cell metabolism and calcium-regulated protein kinases
Cited by: 2
Author(s): Laura de Boni, Gilles Gasparoni, Anna Welle, Sascha Tierling, Imke Schmitt, Jörn Walter, Jochen Walter, Ullrich Wüllner
Software Mentions: 1
Published: over 3 years ago

10.1038/tp.2015.210

Epigenomic profiling of preterm infants reveals DNA methylation differences at sites associated with neural function
Cited by: 70
Author(s): Sarah Sparrow, Jonathan Manning, Jessy Cartier, Devasuda Anblagan, Mark E. Bastin, Chinthika Piyasena, Rozalia Pataky, Emma J. Moore, Scott Semple, A G Wilkinson, Margaret J. Evans, Amanda J. Drake, James P. Boardman
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41398-019-0376-y

Genome-wide DNA methylation comparison between live human brain and peripheral tissues within individuals
Cited by: 243
Author(s): Patricia Braun, Shizhong Han, Benjamin Hing, Yasunori Nagahama, Lindsey Gaul, Jonathan Heinzman, Andrew J. Grossbach, Liesl N. Close, Brian J. Dlouhy, Matthew A. Howard, Hiroto Kawasaki, James B. Potash, Gen Shinozaki
Software Mentions: 1
Published: almost 6 years ago

10.1016/j.dib.2016.09.006

Data of methylome and transcriptome derived from human dilated cardiomyopathy
Cited by: 5
Author(s): Bong Seok Jo, Insong Koh, Jae Bum Bae, Ho Yeong Yu, Eun Seok Jeon, Hae Young Lee, Jae Joong Kim, Murim Choi, Sun Shim Choi
Software Mentions: 1
Published: almost 8 years ago

10.3390/ijms19082296

Pan-Cancer Analysis Reveals Differential Susceptibility of Bidirectional Gene Promoters to DNA Methylation, Somatic Mutations, and Copy Number Alterations
Cited by: 10
Author(s): Jeffrey Thompson, Brock C. Christensen, Carmen J. Marsit
Software Mentions: 1
Published: over 6 years ago

10.1016/j.dib.2018.01.061

Methylation profile of induced pluripotent stem cells generated by integration and integration-free approaches
Cited by: 4
Author(s): Rinat Sultanov, Olga Lebedeva, Georgij Arapidi, Maria A. Lagarkova, С. Л. Киселев
Software Mentions: 1
Published: over 6 years ago

10.3389/fcell.2021.656865

DNA Methylation Variation Is Identified in Monozygotic Twins Discordant for Non-syndromic Cleft Lip and Palate
Cited by: 15
Author(s): Juan I. Young, Susan H. Slifer, Jacqueline Hecht, Susan H. Blanton
Software Mentions: 1
Published: over 3 years ago

10.1186/s13148-019-0719-9

Promoter methylation of SEPT9 as a potential biomarker for early detection of cervical cancer and its overexpression predicts radioresistance
Cited by: 62
Author(s): Xinlin Jiao, Siying Zhang, Jun Jiao, Teng Zhang, Wenjie Qu, Guy Mutangala Muloye, Beihua Kong, Qing Zhang, Baoxia Cui
Software Mentions: 1
Published: over 5 years ago

10.3389/fgene.2019.00227

Analysis of the Epigenome in Multiplex Pre-eclampsia Families Identifies SORD, DGKI, and ICA1 as Novel Candidate Risk Genes
Cited by: 7
Author(s): Amir Ariff, Phillip E. Melton, Shaun Brennecke, Eric K. Moses
Software Mentions: 1
Published: over 5 years ago

10.1186/s13148-019-0679-0

DNA methylation profiling allows for characterization of atrial and ventricular cardiac tissues and hiPSC-CMs
Cited by: 10
Author(s): Kirstin Hoff, Marta Lemme, Anne‐Karin Kahlert, Kerstin Runde, Enrique Audain, Dorit Schuster, Jens Scheewe, Tim Attmann, Thomas Pickardt, Almuth Caliebe, Reiner Siebert, Hans‐Heiner Kramer, Hendrik Milting, Arne Hansen, Ole Ammerpohl, Marc‐Phillip Hitz
Software Mentions: 1
Published: over 5 years ago

10.1186/s13148-015-0158-1

Epigenetic inactivation of the extracellular matrix metallopeptidase ADAMTS19 gene and the metastatic spread in colorectal cancer
Cited by: 24
Author(s): Sergio Alonso, Beatríz González, Tatiana Ruiz-Larroya, Mercedes Durán Domínguez, Takeshi Kato, Akira Matsunaga, Koichi Suzuki, Alex Y. Strongin, Pepita Gimènez-Bonafé, Manuel Perucho
Software Mentions: 1
Published: almost 9 years ago

Projects: bioconductor: RnBeads

Papers Mentioning RnBeads 145