bioconductor: ReactomePA | Projects

10.1016/j.cell.2016.09.037

Lineage-Specific Genome Architecture Links Enhancers and Non-coding Disease Variants to Target Gene Promoters
Cited by: 818
Author(s): Biola M. Javierre, Oliver S. Burren, Steven P. Wilder, Roman Kreuzhuber, Steven M. Hill, Sven Sewitz, Jonathan Cairns, Steven W. Wingett, Csilla Várnai, Michiel J. Thiecke, Frances Burden, Samantha Farrow, Antony J. Cutler, Karola Rehnström, Kate Downes, Luigi Grassi, Myrto Kostadima, Paula Freire-Pritchett, Fan Wang, Hendrik G. Stunnenberg, John A. Todd, Daniel R. Zerbino, Oliver Stegle, Willem H. Ouwehand, Mattia Frontini, Chris Wallace, Mikhail Spivakov, Peter Fraser
Software Mentions: 4
Published: about 8 years ago

10.1186/s12935-020-1116-3

Multi-dimensional omics characterization in glioblastoma identifies the purity-associated pattern and prognostic gene signatures
Cited by: 12
Author(s): Yi Xiong, Zujian Xiong, Hang Cao, Chang Li, Siyi Wanggou, Xuejun Li
Software Mentions: 4
Published: almost 5 years ago

10.3389/fphar.2021.692454

Unsupervised Hierarchical Clustering Identifies Immune Gene Subtypes in Gastric Cancer
Cited by: 9
Author(s): Jing Cao, Jiao Gong, Xinhua Li, Zhaoxia Hu, Yingjun Xu, Huading Shi, Danyang Li, Guangjian Liu, Yusheng Jie, Bo Hu, Yutian Chong
Software Mentions: 4
Published: over 3 years ago

10.1186/s12864-019-5748-4

Plasticity of intestinal gene expression profile signatures reflected by nutritional interventions in piglets
Cited by: 1
Author(s): Dirkjan Schokker, Ina Hulsegge, H. Woelders, Johanna M.J. Rebel
Software Mentions: 3
Published: over 5 years ago

10.1002/ctm2.458

Integrative multiomics analysis of human atherosclerosis reveals a serum response factor‐driven network associated with intraplaque hemorrhage
Cited by: 28
Author(s): Han Jin, Pieter Goossens, Péter Juhász, Wouter J. Eijgelaar, Marco Manca, Jöel Karel, Evgueni Smirnov, C.J.J.M. Sikkink, Barend Mees, Olivia J. Waring, Kim van Kuijk, Gregorio E. Fazzi, Marion J.J. Gijbels, Martina Kutmon, Chris T. Evelo, Ulf Hedin, M. J. A. P. Daemen, Judith C. Sluimer, Ljubica Matic, Erik A. L. Biessen
Software Mentions: 3
Published: over 3 years ago

10.3389/fimmu.2021.660361

Transcriptome Signature of Vγ9Vδ2 T Cells Treated With Phosphoantigens and Notch Inhibitor Reveals Interplay Between TCR and Notch Signaling Pathways
Cited by: 6
Author(s): Ayush Madhok, Sajad Ahmad Bhat, Chinna Susan Philip, Shalini Kashipathi Sureshbabu, Shubhada Chiplunkar, Sanjeev Galande
Software Mentions: 3
Published: about 3 years ago

10.3389/fimmu.2020.607175

Mobilized Multipotent Hematopoietic Progenitors Stabilize and Expand Regulatory T Cells to Protect Against Autoimmune Encephalomyelitis
Cited by: 3
Author(s): Sarantis Korniotis, Maud d’Aveni, Sébastien Hergalant, Hélène Letscher, Emmanuel Tejerina, Pauline Gastineau, Viviane A Agbogan, Christophe Gras, Guillemette Fouquet, Julien Rossignol, Jean-Claude Chèvre, Nicolas Cagnard, Marie‐Thérèse Rubio, Olivier Hermine, Flora Zavala
Software Mentions: 3
Published: almost 4 years ago

10.3390/cells8101253

Genome-Wide Mapping Defines a Role for C/EBPβ and c-Jun in Non-Canonical Cyclic AMP Signalling
Cited by: 5
Author(s): Jolanta Wiejak, Boy van Basten, Graham Hamilton, Stephen J. Yarwood
Software Mentions: 3
Published: about 5 years ago

10.1016/j.celrep.2020.108453

The Microfluidic Environment Reveals a Hidden Role of Self-Organizing Extracellular Matrix in Hepatic Commitment and Organoid Formation of hiPSCs
Cited by: 23
Author(s): Federica Michielin, Giovanni Giuseppe Giobbe, Camilla Luni, Qianjiang Hu, Ida Maroni, Michael Orford, Anna Manfredi, Lucio Di Filippo, Anna L. David, Davide Cacchiarelli, Paolo De Coppi, Simon Eaton, Nicola Elvassore
Software Mentions: 3
Published: almost 4 years ago

10.1186/s13015-015-0035-7

An integrative approach for a network based meta-analysis of viral RNAi screens
Cited by: 6
Author(s): Sandeep Amberkar, Lars Kaderali
Software Mentions: 3
Published: almost 10 years ago

10.3389/fmed.2021.620988

Clonal Evolution Dynamics in Primary and Metastatic Lesions of Pancreatic Neuroendocrine Neoplasms
Cited by: 3
Author(s): Zhou Tong, Lin Wang, Weiwei Shi, Yanwu Zeng, Hangyu Zhang, Lulu Liu, Yi Zheng, Chunlei Chen, Weiliang Xia, Weijia Fang, Peng Zhao
Software Mentions: 3
Published: over 3 years ago

10.3390/cancers13030439

Retrospective Validation of a 168-Gene Expression Signature for Glioma Classification on a Single Molecule Counting Platform
Cited by: 4
Author(s): Paul Tran, Lynn Tran, Khaled Bin Satter, Sharad Purohit, John Nechtman, Diane Hopkins, Bruno dos Santos, Roni J. Bollag, Ravindra Kolhe, Suash Sharma, Jin‐Xiong She
Software Mentions: 3
Published: almost 4 years ago

10.18632/aging.103888

Revealing the targets and mechanisms of vitamin A in the treatment of COVID-19
Cited by: 55
Author(s): Rong Li, Ka Wu, Yu Liu, Liang Xiao, William Ka Fai Tse, Yang Lu, Keng Po Lai
Software Mentions: 3
Published: over 4 years ago

10.1186/s13321-015-0077-3

ChemDIS: a chemical–disease inference system based on chemical–protein interactions
Cited by: 13
Author(s): Chun Wei Tung
Software Mentions: 3
Published: over 9 years ago

10.1038/s41598-018-30640-1

PyMT-1099, a versatile murine cell model for EMT in breast cancer
Cited by: 14
Author(s): Mohit Saxena, Ravi Kiran Reddy Kalathur, Melanie Neutzner, Gerhard Christofori
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-020-64483-6

Salivary proteome signatures in the early and middle stages of human pregnancy with term birth outcome
Cited by: 14
Author(s): Amit Dey, Bhoj Kumar, Abhishek Kumar Singh, Prakash Ranjan, Ramachandran Thiruvengadam, Bapu Koundinya Desiraju, Pallavi Kshetrapal, Nitya Wadhwa, Shinjini Bhatnagar, Faraz Rashid, Dipankar Malakar, Dinakar M. Salunke, Tushar Kanti Maiti
Software Mentions: 3
Published: over 4 years ago

10.1186/s40478-018-0584-3

Unique microglia recovery population revealed by single-cell RNAseq following neurodegeneration
Cited by: 64
Author(s): Tuan Leng Tay, Sagar, Jana Dautzenberg, Dominic Grün, Marco Prinz
Software Mentions: 3
Published: about 6 years ago

10.7717/peerj.3175

Profiling transcriptomes of human SH-SY5Y neuroblastoma cells exposed to maleic acid
Cited by: 7
Author(s): Chia-Chi Wang, Yin Chi Lin, Yin-Hua Cheng, Chun Wei Tung
Software Mentions: 3
Published: over 7 years ago

10.3390/v12080804

Respiratory Syncytial Virus Infection Induces Chromatin Remodeling to Activate Growth Factor and Extracellular Matrix Secretion Pathways
Cited by: 20
Author(s): Xiaofang Xu, Dianhua Qiao, Morgan Mann, Roberto P. Garofalo, Allan R. Brasier
Software Mentions: 3
Published: over 4 years ago

10.1038/s41598-021-98420-y

Short-term transcriptomic response to plasma membrane injury
Cited by: 3
Author(s): Swantje Christin Häger, Catarina Dias, Stine Lauritzen Sønder, André Vidas Olsen, Isabelle da Piedade, Anne Sofie Busk Heitmann, Elena Papaleo, Jesper Nylandsted
Software Mentions: 3
Published: about 3 years ago

10.1038/s41389-018-0083-1

The FAK inhibitor BI 853520 exerts anti-tumor effects in breast cancer
Cited by: 49
Author(s): Stefanie Tiede, Nathalie Meyer-Schaller, Ravi Kiran Reddy Kalathur, Robert Ivánek, Ernesta Fagiani, Philip Schmassmann, Patrick Stillhard, Simon Häfliger, Norbert Kraut, Norbert Schweifer, Irene C. Waizenegger, Ruben Bill, Gerhard Christofori
Software Mentions: 3
Published: about 6 years ago

10.1038/s41389-021-00338-7

USP29-mediated HIF1α stabilization is associated with Sorafenib resistance of hepatocellular carcinoma cells by upregulating glycolysis
Cited by: 29
Author(s): Ruize Gao, David Buechel, Ravi Kiran Reddy Kalathur, Marco Morini, Mairene Coto‐Llerena, Caner Ercan, Salvatore Piscuoglio, Qian Chen, Tanja Blumer, Xueya Wang, Eva Dazert, Markus H. Heim, Michael N. Hall, Fengyuan Tang, Gerhard Christofori
Software Mentions: 3
Published: over 3 years ago

10.1186/s12920-020-0700-7

Transcriptome analysis of HPV-induced warts and healthy skin in humans
Cited by: 13
Author(s): Laith N. AL-Eitan, Amneh H. Tarkhan, Mansour A. Alghamdi, Firas Al‐Qarqaz, Hadeel Alkofahi
Software Mentions: 3
Published: over 4 years ago

10.15252/embj.201899013

A temporally dynamic <i>Foxp3</i> autoregulatory transcriptional circuit controls the effector Treg programme
Cited by: 36
Author(s): David Bending, Alina Paduraru, Catherine Ducker, Paz Prieto Martín, Tessa Crompton, M. Ono
Software Mentions: 3
Published: over 6 years ago

10.1186/s12864-019-5548-x

iGEAK: an interactive gene expression analysis kit for seamless workflow using the R/shiny platform
Cited by: 35
Author(s): Kwangmin Choi, Nancy Ratner
Software Mentions: 3
Published: over 5 years ago

10.1186/s12885-021-08511-2

Molecular and cellular characterization of two patient-derived ductal carcinoma in situ (DCIS) cell lines, ETCC-006 and ETCC-010
Cited by: 2
Author(s): Julia Samson, Magdalina Derlipanska, Oza Zaheed, Kellie Dean
Software Mentions: 3
Published: over 3 years ago

10.1016/j.dib.2020.105860

Characterization of cell-free breast cancer patient-derived scaffolds using liquid chromatography-mass spectrometry/mass spectrometry data and RNA sequencing data
Cited by: 4
Author(s): Göran Landberg, Emma Jonasson, Anna Gustafsson, Paul Fitzpatrick, Pauline Isakson, Jan Ch Karlsson, Erik Larsson, Andreas Svanström, Svanheiður Rafnsdóttir, Emma Persson, Daniel Andersson, Jennifer Rosendahl, Šarūnas Petronis, Parmida Ranji, Pernilla Gregersson, Yvonne Magnusson, Joakim Håkansson, Anders Ståhlberg
Software Mentions: 3
Published: over 4 years ago

10.3389/fimmu.2020.589863

Changes in the Immune Phenotype and Gene Expression Profile Driven by a Novel Tuberculosis Nanovaccine: Short and Long-Term Post-immunization
Cited by: 7
Author(s): Amparo Martínez-Pérez, Ana Igea, Olivia Estévez, Catarina Machado Ferreira, Egídio Torrado, António G. Castro, Carmen Fernández, Anna-Lena Spetz, Lucille Adam, Moisés López González, Mahavir Singh, Rajko Reljić, África González-Fernández
Software Mentions: 2
Published: almost 4 years ago

10.1186/s12920-018-0376-4

Longitudinal expression profiling of CD4+ and CD8+ cells in patients with active to quiescent giant cell arteritis
Cited by: 13
Author(s): Elisabeth De Smit, Samuel W. Lukowski, Lisa K. Anderson, Anne Senabouth, Kaisar Dauyey, Sharon Song, Bruce D. Wyse, Lawrie Wheeler, Christine Y. Chen, Kun Cao, Amy Yuen, Neil Shuey, Linda Clarke, M Isabel G Lopez Sanchez, Stevephen Hung, Alice Pébay, David A. Mackey, Matthew A. Brown, Alex W. Hewitt, Joseph E. Powell
Software Mentions: 2
Published: over 6 years ago

10.3390/ijms20051251

Comparable Genomic Copy Number Aberrations Differ across Astrocytoma Malignancy Grades
Cited by: 11
Author(s): Nives Pećina‐Šlaus, Anja Kafka, Kristina Gotovac Jerčić, Monika Logara, Anja Bukovac, Robert Bakarić, Fran Borovečki
Software Mentions: 2
Published: over 5 years ago

10.3389/fgene.2019.00953

MTGO-SC, A Tool to Explore Gene Modules in Single-Cell RNA Sequencing Data
Cited by: 3
Author(s): Nelson Espinoza N., Danila Vella, Claudia Coronnello, Dario Di Silvestre, Riccardo Bellazzi, Simone Marini
Software Mentions: 2
Published: about 5 years ago

10.3389/fgene.2018.00254

Pan-Cancer Analysis Reveals the Functional Importance of Protein Lysine Modification in Cancer Development
Cited by: 21
Author(s): Li Chen, Yanyan Miao, Mengni Liu, Yanru Zeng, Gao Z, Di Peng, Bosu Hu, Xu Li, Yueyuan Zheng, Yu Xue, Zhixiang Zuo, Yubin Xie, Jian Ren
Software Mentions: 2
Published: over 6 years ago

10.1001/jamanetworkopen.2019.6362

Experimental Acute Exposure to Thirdhand Smoke and Changes in the Human Nasal Epithelial Transcriptome
Cited by: 10
Author(s): Giovanna L. Pozuelos, Meenakshi S. Kagda, Suzaynn F. Schick, Thomas Girke, David C. Volz, Prue Talbot
Software Mentions: 2
Published: over 5 years ago

10.3390/genes12050749

Molecular Pathways Associated with Kallikrein 6 Overexpression in Colorectal Cancer
Cited by: 3
Author(s): Ritu Pandey, Muhan Zhou, Yuliang Chen, Dalila Darmoul, Conner C. Kisiel, Valentine Nfonsam, Natalia A. Ignatenko
Software Mentions: 2
Published: over 3 years ago

10.1111/jcmm.16117

Anti–coronavirus disease 2019 (COVID‐19) targets and mechanisms of puerarin
Cited by: 39
Author(s): Xingyue Qin, Chen Huang, Ka Wu, Yu Liu, Liang Xiao, Min Su, Rong Li
Software Mentions: 2
Published: almost 4 years ago

10.1186/s12931-014-0111-4

Network medicine analysis of COPD multimorbidities
Cited by: 47
Author(s): Solène Grosdidier, Antoni Ferrer, Rosa Faner, Janet Piñero, Josep Roca, Borja G. Cosío, Àlvar Agustí, Joaquim Gea, Ferrán Sanz, Laura I. Furlong
Software Mentions: 2
Published: about 10 years ago

10.1371/journal.pone.0248905

DNA hypo-methylation facilitates anti-inflammatory responses in severe ulcerative colitis
Cited by: 6
Author(s): Hagar Taman, Christopher Graham Fenton, Endre Anderssen, Jon Florholmen, Ruth H. Paulssen
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-017-11519-z

An embryonic system to assess direct and indirect Wnt transcriptional targets
Cited by: 4
Author(s): Jahnavi Suresh, Nathan Harmston, Ka Keat Lim, Prameet Kaur, Helen Jingshu Jin, Jay B Lusk, Enrico Petretto, Nicholas S. Tolwinski
Software Mentions: 2
Published: about 7 years ago

10.26508/lsa.201800149

Loss of miR-210 leads to progressive retinal degeneration in<i>Drosophila melanogaster</i>
Cited by: 12
Author(s): Carina Marianne Weigelt, Oliver Hahn, Katharina Arlt, Matthias Gruhn, Annika Julia Jahn, Jacqueline Eßer, Jennifer Annette Werner, Corinna Klein, Ansgar Büschges, Sebastian Grönke, Linda Partridge
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pgen.1007766

Hepatic gene body hypermethylation is a shared epigenetic signature of murine longevity
Cited by: 7
Author(s): Oliver Hahn, Thomas M. Stubbs, Wolf Reik, Sebastian Grönke, Andreas Beyer, Linda Partridge
Software Mentions: 2
Published: about 6 years ago

10.1038/s41598-019-43699-1

Common functional alterations identified in blood transcriptome of autoimmune cholestatic liver and inflammatory bowel diseases
Cited by: 17
Author(s): Jerzy Ostrowski, Krzysztof Goryca, Izabella Łazowska, Agnieszka Rogowska, Agnieszka Paziewska, Michalina Dąbrowska, Filip Ambrożkiewicz, Jakub Karczmarski, Aneta Bałabas, Anna Kluska, Magdalena Piątkowska, Natalia Żeber‐Lubecka, Maria Kulecka, Andrzej Habior, Michał Mikula
Software Mentions: 2
Published: over 5 years ago

10.1002/jev2.12063

Proteomic profile of melanoma cell‐derived small extracellular vesicles in patients’ plasma: a potential correlate of melanoma progression
Cited by: 35
Author(s): Monika Pietrowska, Aneta Zebrowska, Marta Gawin, Łukasz Marczak, Prateek Sharma, Sujan Kumar Mondal, Justyna Mika, Joanna Polańska, Soldano Ferrone, John M. Kirkwood, Piotr Widłak, Theresa L. Whiteside
Software Mentions: 2
Published: almost 4 years ago

10.1186/s12989-020-00361-3

Serum-borne factors alter cerebrovascular endothelial microRNA expression following particulate matter exposure near an abandoned uranium mine on the Navajo Nation
Cited by: 11
Author(s): Bethany Sanchez, Xixi Zhou, Amy S. Gardiner, Guy Herbert, Selitá Lucas, Masako Morishita, James G. Wagner, Ryan P. Lewandowski, Jack R. Harkema, Chris Shuey, Matthew J. Campen, Katherine E. Zychowski
Software Mentions: 2
Published: over 4 years ago

10.3389/fgene.2019.00023

Identification of Important Effector Proteins in the FOXJ1 Transcriptional Network Associated With Ciliogenesis and Ciliary Function
Cited by: 23
Author(s): Ishita Mukherjee, Sudipto Roy, Saikat Chakrabarti
Software Mentions: 2
Published: over 5 years ago

10.3389/fgene.2021.577623

Gene Set Enrichment Analysis of Interaction Networks Weighted by Node Centrality
Cited by: 23
Author(s): Alessandra Zito, Marta Lualdi, Paola Granata, Dario Cocciadiferro, Antonio Novelli, Tiziana Alberio, Rosario Casalone, Mauro Fasano
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-020-79268-0

Methyl-CpG-binding protein 2 mediates overlapping mechanisms across brain disorders
Cited by: 9
Author(s): Snow Bach, Niamh Ryan, Paolo Guasoni, Aiden Corvin, Rania A. El-Nemr, Danyal Khan, Albert Sanfeliu, Daniela Tropea
Software Mentions: 2
Published: almost 4 years ago

10.1038/s41413-021-00163-z

Spatially defined single-cell transcriptional profiling characterizes diverse chondrocyte subtypes and nucleus pulposus progenitors in human intervertebral discs
Cited by: 57
Author(s): Gan Ye, Jian He, Jun Zhu, Zhengyang Xu, Zhong Wang, Yan Jing, Ou Hu, Zhijie Bai, Lin Chen, Yangli Xie, Min Jin, Shuo Huang, Bing Liu, Peng Liu
Software Mentions: 2
Published: over 3 years ago

10.3389/fneur.2020.00810

Identifying a Comprehensive ceRNA Network to Reveal Novel Targets for the Pathogenesis of Parkinson's Disease
Cited by: 15
Author(s): Xi Zhang, Shengyu Feng, Yu Fan, Yuan Luo, Lingjing Jin, Siguang Li
Software Mentions: 2
Published: over 4 years ago

10.1038/s41419-018-0396-1

Epigenetic modifiers promote mitochondrial biogenesis and oxidative metabolism leading to enhanced differentiation of neuroprogenitor cells
Cited by: 25
Author(s): Martine Uittenbogaard, Christine A. Brantner, Anne Chiaramello
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-020-79627-x

epihet for intra-tumoral epigenetic heterogeneity analysis and visualization
Cited by: 5
Author(s): Xiaowen Chen, Haitham Ashoor, Ryan Musich, Jiahui Wang, Mingsheng Zhang, Chao Zhang, Mingyang Lu, Sheng Li
Software Mentions: 2
Published: almost 4 years ago

10.3389/fcimb.2020.00443

Investigating Non-sterilizing Cure in TB Patients at the End of Successful Anti-TB Therapy
Cited by: 20
Author(s): Caroline G. G. Beltran, Tiaan Heunis, James Gallant, Rouxjeane Venter, Nelita du Plessis, André G. Loxton, Matthias Trost, Jill Winter, Stephanus T. Malherbe, Bavesh D Kana, Gerhard Walzl
Software Mentions: 2
Published: about 4 years ago

10.18632/aging.203306

Interleukin-2 inducible T-cell kinase: a potential prognostic biomarker and tumor microenvironment remodeling indicator for hepatocellular carcinoma
Cited by: 2
Author(s): Bin Pan, Modan Yang, Xuyong Wei, Wangyao Li, Kun Wang, Mengfan Yang, Di Lu, Rui Wang, Beini Cen, Xiao Xu
Software Mentions: 2
Published: over 3 years ago

10.1186/s13104-021-05514-x

Whole genome mapping and identification of single nucleotide polymorphisms of four Bangladeshi individuals and their functional significance
Cited by: 1
Author(s): Salim Khan, Shahina Akter, Barna Goswami, Ahsan Habib, Tanjina Akhtar Banu, Carl Barton, Eshrar Osman, Samiruzzaman Samir, Farida Arjuman, Saam Hasan, Maqsud Hossain
Software Mentions: 2
Published: over 3 years ago

10.1016/j.isci.2021.103168

Site-specific N-glycosylation of integrin α2 mediates collagen-dependent cell survival
Cited by: 6
Author(s): Yen‐Lin Huang, Ching-Yeu Liang, Vera Labitzky, Danilo Ritz, Tiago Oliveira, Cécile Cumin, Manuela Estermann, Tobias Lange, Arun Everest‐Dass, Francis Jacob
Software Mentions: 1
Published: about 3 years ago

10.1039/d0sc06623k

Chemoproteomic profiling of kinases in live cells using electrophilic sulfonyl triazole probes
Cited by: 17
Author(s): Tao Huang, Seyyedmohsen Hosseinibarkooie, Adam L. Borne, Mitchell E. Granade, Jeffrey W. Brulet, Thurl E. Harris, Heather A. Ferris, Ku‐Lung Hsu
Software Mentions: 1
Published: almost 4 years ago

10.1038/s41598-021-92335-4

Gene expression profiling of perineural invasion in head and neck cutaneous squamous cell carcinoma
Cited by: 5
Author(s): Timothy J. Eviston, Elahe Minaei, Simon A. Mueller, Navid Ahmadi, Bruce Ashford, Jonathan Clark, Nicholas P. West, Ping Zhang, Ruta Gupta, Marie Ranson
Software Mentions: 1
Published: over 3 years ago

10.3390/ani10020189

Identification of Important Proteins and Pathways Affecting Feed Efficiency in DLY Pigs by iTRAQ-Based Proteomic Analysis
Cited by: 6
Author(s): Jie Wu, Xingwang Wang, Rongrong Ding, Jianping Quan, Yong Ye, Tao Gu, Zheng Xu, Enqin Zheng, Guangyan Cai, Zhenfang Wu, Ming Yang, Jie Yang
Software Mentions: 1
Published: almost 5 years ago

10.1002/stem.2921

The Role of Nerve Growth Factor in Maintaining Proliferative Capacity, Colony-Forming Efficiency, and the Limbal Stem Cell Phenotype
Cited by: 29
Author(s): Sai Kolli, Sanja Bojić, Ali E. Ghareeb, Marzena Kurzawa‐Akanbi, Francisco C Figueiredo, Majlinda Lako
Software Mentions: 1
Published: almost 6 years ago

10.1186/s13041-020-00653-x

Genetic deletion of microRNA-22 blunts the inflammatory transcriptional response to status epilepticus and exacerbates epilepsy in mice
Cited by: 16
Author(s): Luiz Fernando Almeida Silva, Cristina R. Reschke, N.T. Nguyen, Elena Langa, Amaya Sanz‐Rodriguez, Rogério R. Gerbatin, Fernanda R. Temp, Mayara Lütchemeyer de Freitas, Ronàn Conroy, Gary P. Brennan, Tobías Engel, David C. Henshall
Software Mentions: 1
Published: over 4 years ago

10.3389/fonc.2020.594224

STRAP as a New Therapeutic Target for Poor Prognosis of Pancreatic Ductal Adenocarcinoma Patients Mainly Caused by TP53 Mutation
Cited by: 4
Author(s): Shanshan Hu, Xiao Chen, Xiangxiang Xu, Chenlei Zheng, Wei Huang, Yi Zhou, Percy David Papa Akuetteh, Hongbao Yang, Ke‐Qing Shi, Bicheng Chen, Qiyu Zhang
Software Mentions: 1
Published: about 4 years ago

10.1186/s13058-018-1089-5

Molecular changes during extended neoadjuvant letrozole treatment of breast cancer: distinguishing acquired resistance from dormant tumours
Cited by: 28
Author(s): Çiğdem Selli, Arran Turnbull, Dominic Pearce, Ang Li, Anu Fernando, Jimi Wills, Lorna Renshaw, Jeremy Thomas, J. M. Dixon, Andrew H. Sims
Software Mentions: 1
Published: almost 6 years ago

10.1111/bpa.12949

Upregulation of the pathogenic transcription factor SPI1/PU.1 in tuberous sclerosis complex and focal cortical dysplasia by oxidative stress
Cited by: 9
Author(s): Till S. Zimmer, A. Korotkov, Susan Zwakenberg, Floor E. Jansen, Fried Zwartkruis, Nicholas Rensing, Michael Wong, Angelika Mühlebner, Erwin A. van Vliet, Eleonora Aronica, James D. Mills
Software Mentions: 1
Published: over 3 years ago

10.3389/fcell.2021.539893

Gene Expression Profiles Reveal Extracellular Matrix and Inflammatory Signaling in Radiation-Induced Premature Differentiation of Human Fibroblast in vitro
Cited by: 3
Author(s): Carsten Herskind, Carsten Sticht, Ahmad Šami, Frank A. Giordano, Frederik Wenz
Software Mentions: 1
Published: almost 4 years ago

10.18632/aging.102840

ESHRD: deconvolution of brain homogenate RNA expression data to identify cell-type-specific alterations in Alzheimer’s disease
Cited by: 4
Author(s): Ignazio S. Piras, Christiane Bleul, Joshua S. Talboom, Matthew De Both, Isabelle Schrauwen, Glenda M. Halliday, Amanda Myers, Geidy E. Serrano, Thomas G. Beach, Matthew J. Huentelman
Software Mentions: 1
Published: over 4 years ago

10.3389/fimmu.2021.664534

2,2’4,4’-Tetrabromodiphenyl Ether (PBDE-47) Modulates the Intracellular miRNA Profile, sEV Biogenesis and Their miRNA Cargo Exacerbating the LPS-Induced Pro-Inflammatory Response in THP-1 Macrophages
Cited by: 15
Author(s): Valeria Longo, Alessandra Longo, Giorgia Adamo, Antonino Fiannaca, Sabrina Picciotto, Laura La Paglia, Daniele P. Romancino, Massimo La Rosa, Alfonso Urso, Fabio Cibella, Antonella Bongiovanni, Piergiuseppe Colombo
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pone.0226735

Complex patterns of cell growth in the placenta in normal pregnancy and as adaptations to maternal diet restriction
Cited by: 24
Author(s): Malcolm Eaton, Alastair Davies, Jay Devine, Xiang Zhao, David G. Simmons, Elín Maríusdóttir, David R.C. Natale, John R. Matyas, Elizabeth A. Bering, Matthew L. Workentine, Benedikt Hallgrímsson, James C. Cross
Software Mentions: 1
Published: almost 5 years ago

10.1016/j.isci.2021.102420

Cell-type-resolved quantitative proteomics map of interferon response against SARS-CoV-2
Cited by: 47
Author(s): Elisa Saccon, Xi Chen, Flora Mikaeloff, Jimmy E Rodriguez, L. Szekeres, Beatriz Sá Vinhas, Shuba Krishnan, Siddappa N. Byrareddy, Teresa Frisan, Ákos Végvári, Alì Mirazimi, Ujjwal Neogi, Soham Gupta
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-018-28002-y

Activation of the p53-MDM4 regulatory axis defines the anti-tumour response to PRMT5 inhibition through its role in regulating cellular splicing
Cited by: 113
Author(s): Sarah V. Gerhart, Wendy A. Kellner, Christine Thompson, Melissa B. Pappalardi, Xiping Zhang, Rocío Montes de, Elayne Penebre, Kenneth W. Duncan, Ann Boriack-Sjodin, BaoChau Le, Christina R. Majer, Michael T. McCabe, Chris Carpenter, Neil Johnson, Ryan G. Kruger, Olena Barbash
Software Mentions: 1
Published: over 6 years ago

10.1186/1471-2164-13-472

Transcriptome classification reveals molecular subtypes in psoriasis
Cited by: 54
Author(s): Chrysanthi Ainali, Najl V. Valeyev, Gayathri Perera, Andrew E. Williams, Jóhann E. Guðjónsson, Christos A. Ouzounis, Frank O. Nestle, Sophia Tsoka
Software Mentions: 1
Published: about 12 years ago

10.1200/CCI.19.00109

Epigenetic Conservation Is a Beacon of Function: An Analysis Using Methcon5 Software for Studying Gene Methylation
Cited by: 3
Author(s): Emil Hvitfeldt, Chao Xia, Kimberly D. Siegmund, Darryl Shibata, Paul Marjoram
Software Mentions: 1
Published: about 4 years ago

10.1038/s41598-020-58135-y

Zika virus targets the human thymic epithelium
Cited by: 14
Author(s): Carolina Valença Messias, Guilherme Loss-Morais, João Batista Pereira de Carvalho, Mariela Natacha González, Daniela P. Cunha, Zilton Farias Meira de Vasconcelos, Luis Willian Pacheco Arge, Désio Aurélio Farias-de-Oliveira, Alexandra Lehmkuhl Gerber, Elyzabeth Avvad Portari, Nilma Valéria Caldeira Ferreira, Lidiane Menezes Souza Raphael, Myrna C. Bonaldo, Ingo Riederer, Maria Elisabeth Lopes Moreira, Vinı́cius Cotta-de-Almeida, Ana Tereza Ribeiro de Vasconcelos, Daniella Arêas Mendes-da-Cruz, Wilson Savino
Software Mentions: 1
Published: almost 5 years ago

Projects: bioconductor: ReactomePA

Papers Mentioning ReactomePA 171