bioconductor: RTCGA | Projects | Ecosyste.ms: Papers

10.3389/fonc.2020.617890

Comparative Proteome Identifies Complement Component 3-Mediated Immune Response as Key Difference of Colon Adenocarcinoma and Rectal Adenocarcinoma
Cited by: 9
Author(s): Jun-Ze Liang, Xiaoling Liang, Liye Zhong, Chutian Wu, Jing Zhang, Yang Wang
Software Mentions: 30
Published: almost 4 years ago

10.1186/s12859-019-2974-3

miRFA: an automated pipeline for microRNA functional analysis with correlation support from TCGA and TCPA expression data in pancreatic cancer
Cited by: 11
Author(s): Emmy Borgmästars, Hendrik A de Weerd, Zelmina Lubovac-Pilav, Malin Sund
Software Mentions: 8
Published: over 5 years ago

10.1002/1878-0261.12138

<scp>APE</scp>1/Ref‐1 knockdown in pancreatic ductal adenocarcinoma – characterizing gene expression changes and identifying novel pathways using single‐cell <scp>RNA</scp> sequencing
Cited by: 26
Author(s): Fenil Shah, Emery Goossens, Nadia M. Atallah, Michelle Grimard, Mark R. Kelley, Melissa L. Fishel
Software Mentions: 5
Published: about 7 years ago

10.1038/s41598-018-33276-3

Mutation pattern analysis reveals polygenic mini-drivers associated with relapse after surgery in lung adenocarcinoma
Cited by: 5
Author(s): Laura Bennett, Mary Howell, Danish Memon, Chris Smowton, Cong Zhou, Crispin Miller
Software Mentions: 5
Published: about 6 years ago

10.12688/f1000research.18705.2

Analysis of correlation-based biomolecular networks from different omics data by fitting stochastic block models
Cited by: 1
Author(s): Katharina Baum, Jagath C. Rajapakse, Francisco Azuaje
Software Mentions: 5
Published: over 5 years ago

10.7717/peerj.6509

cRegulome: an R package for accessing microRNA and transcription factor-gene expression correlations in cancer
Cited by: 1
Author(s): Mahmoud Ahmed, Deok Ryong Kim
Software Mentions: 4
Published: almost 6 years ago

10.1038/s41598-017-11520-6

Identification of prognostic genes through expression differentiation during metastatic process in lung adenocarcinoma
Cited by: 2
Author(s): Ning An, Xue Yang
Software Mentions: 3
Published: over 7 years ago

10.1186/s12859-020-03768-z

MADloy: robust detection of mosaic loss of chromosome Y from genotype-array-intensity data
Cited by: 6
Author(s): Juan R. González, Marcos López-Sánchez, Alejandro Cáceres, Pere Puig, Tõnu Esko, Luis A. Pérez‐Jurado
Software Mentions: 3
Published: about 4 years ago

10.7717/peerj.10884

Predicting lung adenocarcinoma disease progression using methylation-correlated blocks and ensemble machine learning classifiers
Cited by: 5
Author(s): Xin Yu, Qian Yang, Dong Wang, Zhaoyang Li, Nianhang Chen, De-Xin Kong
Software Mentions: 3
Published: almost 4 years ago

10.3390/cancers11111755

The Role of Nrf2 Activity in Cancer Development and Progression
Cited by: 157
Author(s): Alina-Andreea Zimța, Diana Cenariu, Alexandru Irimie, Lorand Magdo, Seyed Mohammad Nabavi, Atanas G. Atanasov
Software Mentions: 3
Published: about 5 years ago

10.1038/cdd.2017.81

RIP4 inhibits STAT3 signaling to sustain lung adenocarcinoma differentiation
Cited by: 25
Author(s): Jawahar Kopparam, Johanna Chiffelle, Paolo Angelino, Alessandra Piersigilli, Nadine Zangger, Mauro Delorenzi, Etienne Meylan
Software Mentions: 3
Published: over 7 years ago

10.7150/jca.31435

Aberrant AFP expression characterizes a subset of hepatocellular carcinoma with distinct gene expression patterns and inferior prognosis
Cited by: 15
Author(s): Wei Chen, Jianjun Peng, Jinning Ye, Weigang Dai, Guanghua Li, Yulong He
Software Mentions: 3
Published: almost 5 years ago

10.1186/s13104-018-3160-9

miRCancerdb: a database for correlation analysis between microRNA and gene expression in cancer
Cited by: 22
Author(s): Mahmoud Ahmed, Huynh Quoc Nguyen, Trang Huyen Lai, Deok Ryong Kim
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41388-017-0038-6

GNA13 expression promotes drug resistance and tumor-initiating phenotypes in squamous cell cancers
Cited by: 35
Author(s): Suhail Ahmed Kabeer Rasheed, Hui Sun Leong, Manikandan Lakshmanan, Anandhkumar Raju, Dhivya Dadlani, Fui-Teen Chong, Nicholas B. Shannon, Ravisankar Rajarethinam, Thakshayeni Skanthakumar, Ern Yu Tan, Jacqueline Siok Gek Hwang, Kim Lim, Daniel Shao-Weng Tan, Paolo Ceppi, Mei Wang, Vinay Tergaonkar, Patrick J. Casey, N. Gopalakrishna Iyer
Software Mentions: 2
Published: about 7 years ago

10.1186/s12885-020-07731-2

Integrated analysis of mRNA and miRNA profiles revealed the role of miR-193 and miR-210 as potential regulatory biomarkers in different molecular subtypes of breast cancer
Cited by: 12
Author(s): Adriane Feijó Evangelista, Renato Oliveira, Viviane Aline Oliveira Silva, René Aloísio da Costa Vieira, Rui Manuel Reis, Márcia Maria Chiquitelli Marques
Software Mentions: 2
Published: almost 4 years ago

10.3390/cancers13123049

Gene Expression Changes Associated with Dedifferentiation in Liposarcoma Predict Overall Survival
Cited by: 0
Author(s): Nicholas B. Shannon, Qiu Xuan Tan, Joey Wee-Shan Tan, Josephine Hendrikson, Wai Har Ng, Gillian Ng, Ying Liu, Grace Hwei Ching Tan, Jolene Si Min Wong, Khee Chee Soo, Melissa Ching Ching Teo, Claramae Shulyn Chia, Chin-Ann Johnny Ong
Software Mentions: 2
Published: over 3 years ago

10.3390/proteomes8020012

Is It Possible to Find Needles in a Haystack? Meta-Analysis of 1000+ MS/MS Files Provided by the Russian Proteomic Consortium for Mining Missing Proteins
Cited by: 2
Author(s): Ekaterina V. Poverennaya, Olga I. Kiseleva, Ekaterina V. Ilgisonis, Svetlana E. Novikova, Arthur T. Kopylov, Yu. D. Ivanov, А. С. Кононихин, Mikhail V. Gorshkov, Н. Е. Кушлинский, Alexander I. Archakov, Elena Ponomarenko
Software Mentions: 2
Published: over 4 years ago

10.18632/oncotarget.27387

Head and neck squamous cancer progression is marked by CLIC4 attenuation in tumor epithelium and reciprocal stromal upregulation of miR-142-3p, a novel post-transcriptional regulator of <i>CLIC4</i>
Cited by: 8
Author(s): Brandi L. Carofino, Kayla M Dinshaw, Pui Yan Ho, Christophe Cataisson, Aleksandra M. Michalowski, Andrew Ryscavage, Addie Alkhas, Nathan Wong, Vishal N. Kopardé, Stuart H. Yuspa
Software Mentions: 1
Published: almost 5 years ago

10.3390/biomedicines8120564

The miRNA Content of Exosomes Released from the Glioma Microenvironment Can Affect Malignant Progression
Cited by: 10
Author(s): Federica Caponnetto, Emiliano Dalla, Damiano Mangoni, Silvano Piazza, Slobodanka Radović, Tamara Ius, Miran Škrap, Carla Di Loreto, Antonio Paolo Beltrami, Ivana Manini, Daniela Cesselli
Software Mentions: 1
Published: about 4 years ago

10.1186/s13047-021-00482-8

Podiatrists’ views and experiences of using real time clinical gait analysis in the assessment and treatment of posterior tibial tendon dysfunction
Cited by: 0
Author(s): Paul Harradine, Lucy Gates, Cheryl Metcalf, Catherine Bowen
Software Mentions: 1
Published: over 3 years ago

10.1038/s41388-018-0287-z

Myoferlin controls mitochondrial structure and activity in pancreatic ductal adenocarcinoma, and affects tumor aggressiveness
Cited by: 42
Author(s): Gilles Rademaker, Vincent Hennequière, Laura Brohée, Marie-Julie Nokin, Pierre Lovinfosse, Florence Durieux, Stéphanie Gofflot, Justine Bellier, Brunella Costanza, Michaël Herfs, Raphaël Peiffer, Lucien Bettendorff, Christophe Deroanne, Marc Thiry, Philippe Delvenne, Roland Hustinx, Akeila Bellahcène, Vincent Castronovo, Olivier Peulen
Software Mentions: 1
Published: over 6 years ago

10.18632/aging.202147

The long noncoding RNA LINC01140/miR-140-5p/FGF9 axis modulates bladder cancer cell aggressiveness and macrophage M2 polarization
Cited by: 25
Author(s): Shuiqing Wu, Ran Xu, Xuan Zhu, Haiqing He, Jinhua Zhang, Zhang Qi, Yinhuai Wang, Xiaokun Zhao
Software Mentions: 1
Published: about 4 years ago

Ecosyste.ms: Papers

Projects: bioconductor: RTCGA

Papers Mentioning RTCGA 22