bioconductor: RRHO | Projects | Ecosyste.ms: Papers

10.1038/s41597-019-0207-2

Compendiums of cancer transcriptomes for machine learning applications
Cited by: 13
Author(s): Su Bin Lim, Swee Jin Tan, Wan-Teck Lim, Chwee Teck Lim
Software Mentions: 7
Published: about 5 years ago

Estimating and Correcting for Off-Target Cellular Contamination in Brain Cell Type Specific RNA-Seq Data
Cited by: 7
Author(s): Jordan Sicherman, Dwight F. Newton, Paul Pavlidis, Etienne Sibille, Shreejoy J. Tripathy
Software Mentions: 6
Published: over 3 years ago

10.3390/ijms20236098

RankerGUI: A Computational Framework to Compare Differential Gene Expression Profiles Using Rank Based Statistics
Cited by: 5
Author(s): Amarinder Singh Thind, Kumar Parijat Tripathi, Mario Rosario Guarracino
Software Mentions: 5
Published: almost 5 years ago

10.1523/ENEURO.0166-18.2018

Genetic Control of Myelin Plasticity after Chronic Psychosocial Stress
Cited by: 45
Author(s): Mikaela Laine, Kalevi Trontti, Zuzanna Misiewicz, Ewa Sokołowska, Natalia Kulesskaya, Aino Heikkinen, Suvi Saarnio, Ingrid Balcells, Pierre Ameslon, Dario Greco, Pirkko Mattila, Pekka Ellonen, Lars Paulín, Petri Auvinen, Eija Jokitalo, Iiris Hovatta
Software Mentions: 4
Published: over 6 years ago

10.1186/s12864-020-07003-0

Combined transcriptome and proteome profiling of the pancreatic β-cell response to palmitate unveils key pathways of β-cell lipotoxicity
Cited by: 28
Author(s): Maria Lytrivi, Kassem Ghaddar, Miguel Lopes, Victoria Rosengren, Anthony Piron, Xiaoyan Yi, Henrik J. Johansson, Janne Lehtiö, Mariana Igoillo-Esteve, Daniel Andrade Da Cunha, Lorella Marselli, Piero Marchetti, Henrik Ortsäter, Décio L. Eizirik, Miriam Cnop
Software Mentions: 3
Published: about 4 years ago

10.3389/fimmu.2021.679521

Creation of a Single Cell RNASeq Meta-Atlas to Define Human Liver Immune Homeostasis
Cited by: 8
Author(s): Brittany Rocque, Arianna Barbetta, Pranay Singh, Cameron Goldbeck, Doumet Georges Helou, Yong-Hwee Eddie Loh, Nolan Ung, Jerry Lee, Omid Akbari, Juliet Emamaullee
Software Mentions: 3
Published: over 3 years ago

10.3389/fnins.2019.00297

Regeneration Enhances Metastasis: A Novel Role for Neurovascular Signaling in Promoting Melanoma Brain Metastasis
Cited by: 13
Author(s): Roshini Prakash, Sivan Izraely, Nikita S. Thareja, Rex H. Lee, Maya Rappaport, Riki Kawaguchi, Orit Sagi‐Assif, Shlomit Ben‐Menachem, Tsipi Meshel, Michał Machnicki, Shuichi Ohe, Dave S. B. Hoon, Giovanni Coppola, Isaac P. Witz, S. Thomas Carmichael
Software Mentions: 3
Published: over 5 years ago

10.1016/j.mcpro.2021.100096

Proteomic Portraits Reveal Evolutionarily Conserved and Divergent Responses to Spinal Cord Injury
Cited by: 14
Author(s): Michael A. Skinnider, Jason C. Rogalski, Seth Tigchelaar, Neda Manouchehri, Anna Prudova, Angela Jackson, Karina Nielsen, Jaihyun Jeong, Shalini Chaudhary, Katelyn Shortt, Ylonna Gallagher-Kurtzke, Kitty So, Allan Fong, Rishab Gupta, Elena B. Okon, Michael A. Rizzuto, Kevin Dong, Femke Streijger, Lise Bélanger, Leanna Ritchie, Angela Tsang, Sean Christie, Jean-Marc Mac-Thiong, Chris Bailey, Tamir Ailon, Raphaële Charest-Morin, Nicolas Dea, Jefferson R. Wilson, Sanjay S. Dhall, Scott Paquette, John Street, Charles G. Fisher, Marcel F. Dvorak, Casey P. Shannon, Christoph H. Borchers, Robert Balshaw, Leonard J. Foster, Brian K. Kwon
Software Mentions: 3
Published: almost 4 years ago

10.1038/s41598-019-50927-1

TIP60/KAT5 is required for neuronal viability in hippocampal CA1
Cited by: 15
Author(s): Inga Urban, Cemil Kerimoğlu, M. Sadman Sakib, Haifang Wang, Eva Benito, Christina Thaller, Xunlei Zhou, Jun Yan, André Fischer, Gregor Eichele
Software Mentions: 3
Published: about 5 years ago

10.1186/s13046-021-02037-y

Molecular features and vulnerabilities of recurrent chordomas
Cited by: 4
Author(s): Carolin Seeling, André Lechel, Michael Svinarenko, Peter Möller, Thomas Barth, Kevin Mellert
Software Mentions: 3
Published: over 3 years ago

10.7554/eLife.41356

Chemical modulation of transcriptionally enriched signaling pathways to optimize the conversion of fibroblasts into neurons
Cited by: 34
Author(s): Joseph R. Herdy, Simon Schäfer, Yongsung Kim, Zoya Ansari, Dina Zangwill, Manching Ku, Apuã C.M. Paquola, Hyungjun Lee, Jérôme Mertens, Fred H. Gage
Software Mentions: 3
Published: over 5 years ago

10.1002/jcsm.12706

Transcriptomic meta‐analysis of disuse muscle atrophy vs. resistance exercise‐induced hypertrophy in young and older humans
Cited by: 14
Author(s): Colleen S. Deane, Craig R. G. Willis, Bethan E. Phillips, Philip J. Atherton, Lorna W. Harries, Ryan M. Ames, Nathaniel J. Szewczyk, Timothy Etheridge
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-021-83348-0

Creation of a gene expression portrait of depression and its application for identifying potential treatments
Cited by: 10
Author(s): Stephen C. Gammie
Software Mentions: 2
Published: almost 4 years ago

10.1038/s41598-021-89874-1

Increased hippocampal excitability in miR-324-null mice
Cited by: 8
Author(s): D.J. Hayman, Tamara Modebadze, Sarah Charlton, Kathleen Cheung, Jamie Soul, Hua Lin, Hao Yao, Colin Miles, Dimitra Tsompani, Robert M. Jackson, Michael D. Briggs, Katarzyna A. Piróg, Ian M. Clark, M.J. Barter, Gavin J. Clowry, Fiona E. N. LeBeau, David A. Young
Software Mentions: 2
Published: over 3 years ago

10.1038/s41398-020-0742-9

Sex differences in adult mood and in stress-induced transcriptional coherence across mesocorticolimbic circuitry
Cited by: 21
Author(s): William Paden, Kelly Barko, Rachel Puralewski, Kelly Cahill, Zhiguang Huo, Micah A. Shelton, George C. Tseng, Ryan W. Logan, Marianne L. Seney
Software Mentions: 2
Published: almost 5 years ago

10.3389/fnmol.2017.00248

Translational Identification of Transcriptional Signatures of Major Depression and Antidepressant Response
Cited by: 26
Author(s): Mylène Hervé, Aurélie Bergon, Anne-Marie Le Guisquet, Samuel Leman, Julia-Lou Consoloni, Nicolas Fernandez-Nunez, Marie-Noëlle Lefebvre, Wissam El‐Hage, Raoul Belzeaux, Catherine Belzung, El Chérif Ibrahim
Software Mentions: 2
Published: over 7 years ago

10.1186/s13059-020-02171-4

RNA editing in cancer impacts mRNA abundance in immune response pathways
Cited by: 26
Author(s): Tracey W. Chan, Ting Fu, Jae Hoon Bahn, Hyun-Ik Jun, Jae‐Hyung Lee, Giovanni Quinones-Valdez, Chonghui Cheng, Xinshu Xiao
Software Mentions: 2
Published: about 4 years ago

10.1038/s41598-018-27903-2

Improved identification of concordant and discordant gene expression signatures using an updated rank-rank hypergeometric overlap approach
Cited by: 146
Author(s): Kelly Cahill, Zhiguang Huo, George C. Tseng, Ryan W. Logan, Marianne L. Seney
Software Mentions: 1
Published: over 6 years ago

10.1016/j.bbih.2021.100219

Early life stress and LPS interact to modify the mouse cortical transcriptome in the neonatal period
Cited by: 2
Author(s): Eamon Fitzgerald, James P. Boardman, Amanda J. Drake
Software Mentions: 1
Published: over 3 years ago

10.1186/s12964-015-0096-8

Constitutive activation of oncogenic PDGFRα-mutant proteins occurring in GIST patients induces receptor mislocalisation and alters PDGFRα signalling characteristics
Cited by: 28
Author(s): Christelle Bahlawane, René Eulenfeld, Monique Wiesinger, Jiali Wang, Arnaud Muller, Andreas Girod, Petr V. Nazarov, Kathrin Felsch, Laurent Vallar, Thomas Sauter, Venkata Satagopam, Serge Haan
Software Mentions: 1
Published: over 9 years ago

10.3390/molecules171113146

Stability Computations for Isomers of La@Cn (n = 72, 74, 76)
Cited by: 11
Author(s): Zdeněk Slanina, Filip Uhlı́k, Shyi Long Lee, Ludwik Adamowicz, Takeshi Akasaka, Shigeru Nagase
Software Mentions: 1
Published: about 12 years ago

10.18632/oncotarget.7361

Cross-platform comparison of independent datasets identifies an immune signature associated with improved survival in metastatic melanoma
Cited by: 12
Author(s): Ricardo Dante Lardone, Seema B. Plaisier, Marian Navarrete, Jaime Shamonki, John R. Jalas, Peter A. Sieling, Delphine J. Lee
Software Mentions: 1
Published: almost 9 years ago

Ecosyste.ms: Papers

Projects: bioconductor: RRHO

Papers Mentioning RRHO 22