bioconductor: PING | Projects | Ecosyste.ms: Papers

10.7717/peerj.1981

DChIPRep, an R/Bioconductor package for differential enrichment analysis in chromatin studies
Cited by: 6
Author(s): Christophe D. Chabbert, Lars M. Steinmetz, Bernd Klaus
Software Mentions: 11
Published: over 8 years ago

10.1371/journal.pcbi.1008904

High-throughput Interpretation of Killer-cell Immunoglobulin-like Receptor Short-read Sequencing Data with PING
Cited by: 15
Author(s): Wesley M. Marin, Ravi Dandekar, Danillo G. Augusto, Tasneem Yusufali, Bianca Heyn, Jan A. Hofmann, Vinzenz Lange, Jürgen Sauter, Paul J. Norman, Jill A. Hollenbach
Software Mentions: 4
Published: almost 3 years ago

10.3389/fgene.2012.00320

NSeq: a multithreaded Java application for finding positioned nucleosomes from sequencing data
Cited by: 7
Author(s): Abhinav Nellore, Konstantin K. Bobkov, Elizabeth D. Howe, Aleksandr Pankov, Aaron A. Diaz, Jun S. Song
Software Mentions: 4
Published: over 11 years ago

10.1093/molbev/msab147

Analysis of Genomic DNA from Medieval Plague Victims Suggests Long-Term Effect of <i>Yersinia pestis</i> on Human Immunity Genes
Cited by: 23
Author(s): Alexander Immel, Felix M. Key, András Szolek, Rodrigo Barquera, Madeline K. Robinson, Genelle F Harrison, William H. Palmer, Maria A. Spyrou, Julian Susat, Ben Krause‐Kyora, Kirsten I. Bos, Stephen Forrest, Diana Iraíz Hernández-Zaragoza, Jürgen Sauter, Ute V. Solloch, Alexander H. Schmidt, Verena J. Schuenemann, Ella Reiter, Madita S. Kairies, R. Weiss, Susanne M. Arnold, Joachim Wahl, Jill A. Hollenbach, Oliver Kohlbacher, Alexander Herbig, Paul J. Norman, Johannes Krause
Software Mentions: 4
Published: about 3 years ago

10.1371/journal.pone.0227355

Genome wide association study of incomplete hippocampal inversion in adolescents
Cited by: 7
Author(s): Claire Cury, Marzia Antonella Scelsi, Roberto Toro, Vincent Frouin, Éric Artiges, Antoine Grigis, Andreas Heinz, Hervé Lemaître, Jean‐Luc Martinot, Jean‐Baptiste Poline, Michael N. Smolka, Henrik Walter, Gunter Schümann, André Altmann, Olivier Colliot
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0032095

Probabilistic Inference for Nucleosome Positioning with MNase-Based or Sonicated Short-Read Data
Cited by: 20
Author(s): Xuekui Zhang, Gordon Robertson, Sangsoon Woo, Brad G. Hoffman, Raphaël Gottardo
Software Mentions: 3
Published: over 12 years ago

10.1371/journal.pcbi.1009416

Integration, coincidence detection and resonance in networks of spiking neurons expressing Gamma oscillations and asynchronous states
Cited by: 6
Author(s): Eduarda Susin, Alain Destexhe
Software Mentions: 3
Published: almost 3 years ago

10.3389/fnhum.2018.00465

Connectivity of the Human Number Form Area Reveals Development of a Cortical Network for Mathematics
Cited by: 11
Author(s): Federico Nemmi, Margot A. Schel, Torkel Klingberg
Software Mentions: 2
Published: over 5 years ago

10.3389/fimmu.2020.582927

Efficient Sequencing, Assembly, and Annotation of Human KIR Haplotypes
Cited by: 8
Author(s): David Roe, Jonathan Williams, Keyton Ivery, Jenny Brouckaert, Nick Downey, Chad Locklear, Rui Kuang, Martin Maiers
Software Mentions: 2
Published: almost 4 years ago

10.1016/j.celrep.2021.109083

Cortical gamma-band resonance preferentially transmits coherent input
Cited by: 22
Author(s): Chris Lewis, Jianguang Ni, Thomas Wunderle, Patrick Jendritza, Andreea Lazar, Ilka Diester, Pascal Fries
Software Mentions: 2
Published: about 3 years ago

10.3389/fimmu.2019.00024

Conservation, Extensive Heterozygosity, and Convergence of Signaling Potential All Indicate a Critical Role for KIR3DL3 in Higher Primates
Cited by: 20
Author(s): Laura Ann Leaton, Jonathan A. Shortt, Katherine M Kichula, Sudan Tao, Neda Nemat-Gorgani, Alexander J. Mentzer, Stephen Oppenheimer, Zhihui Deng, Jill A. Hollenbach, Christopher R. Gignoux, Lisbeth A. Guethlein, Peter Parham, Mary Carrington, Paul J. Norman
Software Mentions: 2
Published: over 5 years ago

10.3390/e21121180

Automatic Translation and Enforcement of Cybersecurity Policies Using A High-Level Definition Language
Cited by: 1
Author(s): Diego Rivera, Fernando Monje, Víctor A. Villagrá, Mario Vega-Barbas, Xavier Larriva-Novo, Julio Berrocal
Software Mentions: 1
Published: over 4 years ago

10.1007/s11356-018-2716-5

RECOTOX, a French initiative in ecotoxicology-toxicology to monitor, understand and mitigate the ecotoxicological impacts of pollutants in socioagroecosystems
Cited by: 5
Author(s): Christian Mougin, Véronique Gouy, Vincent Bretagnolle, Julie Berthou, Patrick Andrieux, P. Ansart, Marc Benoît, Michaël Cœurdassier, Irina Comte, Cécile Dagès, Laurence Denaix, Sylvie Dousset, Laure Ducreux, Sabrina Gaba, Daniel Gilbert, Gwenaël Imfeld, Lucie Liger, Jérôme Molenat, Sylvain Payraudeau, Anatja Samouëlian, Céline Schott, Gaëlle Tallec, Emma Vivien, Marc Voltz
Software Mentions: 1
Published: about 6 years ago

10.3389/fncom.2020.00082

Oscillatory Bursting as a Mechanism for Temporal Coupling and Information Coding
Cited by: 18
Author(s): Idan Tal, Samuel A. Neymotin, Stephan Bickel, Péter L. Lakatos, Charles E. Schroeder
Software Mentions: 1
Published: almost 4 years ago

10.3389/fncom.2021.678688

Model Reduction Captures Stochastic Gamma Oscillations on Low-Dimensional Manifolds
Cited by: 1
Author(s): Yuhang Cai, Tianyi Wu, Louis Tao, Zhuo-Cheng Xiao
Software Mentions: 1
Published: almost 3 years ago

10.3389/fimmu.2018.02843

Allele-Level KIR Genotyping of More Than a Million Samples: Workflow, Algorithm, and Observations
Cited by: 51
Author(s): Ines Wagner, Daniel Schefzyk, Jens Pruschke, Gerhard Schöfl, Bianca Schöne, Nicole Gruber, Kathrin Lang, Jan A. Hofmann, Christine Gnahm, Bianca Heyn, Wesley M. Marin, Ravi Dandekar, Jill A. Hollenbach, Johannes Schetelig, Julia Pingel, Paul J. Norman, Jürgen Sauter, Alexander H. Schmidt, Vinzenz Lange
Software Mentions: 1
Published: over 5 years ago

10.3389/fncir.2017.00104

Dichotomous Dynamics in E-I Networks with Strongly and Weakly Intra-connected Inhibitory Neurons
Cited by: 18
Author(s): Scott Rich, Michał Żochowski, Victoria Booth
Software Mentions: 1
Published: over 6 years ago

10.3389/fninf.2014.00025

A web-portal for interactive data exploration, visualization, and hypothesis testing
Cited by: 29
Author(s): Hauke Bartsch, Wesley K. Thompson, Terry L. Jernigan, Anders M. Dale
Software Mentions: 1
Published: over 10 years ago

10.1590/1678-4685-GMB-2021-0036

An immunogenetic view of COVID-19
Cited by: 10
Author(s): Vitor R. C. Aguiar, Danillo G. Augusto, Erick C. Castelli, Jill A. Hollenbach, Diogo Meyer, Kelly Nunes, María Luiza Petzl-Erler
Software Mentions: 1
Published: over 3 years ago

10.3390/jcm10184209

“Lessons Learned” Preventing Recurrent Ischemic Strokes through Secondary Prevention Programs: A Systematic Review
Cited by: 3
Author(s): Clare Lambert, Oluwaseyi Olulana, Lisa Bailey‐Davis, Vida Abedi, Ramin Zand
Software Mentions: 1
Published: almost 3 years ago

10.1038/s41598-020-58307-w

Sensitive Readout for Microfluidic High-Throughput Applications using Scanning SQUID Microscopy
Cited by: 8
Author(s): Shai Wissberg, Maria Ronen, Oren Ziv, Doron Gerber, Beena Kalisky
Software Mentions: 1
Published: over 4 years ago

10.1186/2190-8567-4-10

Approximate, not Perfect Synchrony Maximizes the Downstream Effectiveness of Excitatory Neuronal Ensembles
Cited by: 2
Author(s): Christoph Börgers, Jie Li, Nancy Kopell
Software Mentions: 1
Published: over 10 years ago

10.7554/eLife.26642

A quantitative theory of gamma synchronization in macaque V1
Cited by: 54
Author(s): Eric Lowet, Mark Roberts, Alina Peter, Bart Gips, Peter De Weerd
Software Mentions: 1
Published: almost 7 years ago

10.1186/1471-2105-16-S15-I1

Proceedings of the Fourteenth Annual UT- KBRIN Bioinformatics Summit 2015
Cited by: 0
Author(s): Eric C. Rouchka, Julia H. Chariker, Benjamin J. Harrison
Software Mentions: 1
Published: almost 9 years ago

10.2196/jmir.984

Evaluation of Influenza Prevention in the Workplace Using a Personally Controlled Health Record: Randomized Controlled Trial
Cited by: 41
Author(s): Florence T. Bourgeois, William Walter Simons, Karen L. Olson, John S. Brownstein, Kenneth D. Mandl
Software Mentions: 1
Published: over 16 years ago

10.1186/1471-2164-7-93

GenePING: secure, scalable management of personal genomic data
Cited by: 28
Author(s): Benjamin M Adida, Isaac S. Kohane
Software Mentions: 1
Published: over 18 years ago

10.1186/1755-8794-7-16

PhenX RISING: real world implementation and sharing of PhenX measures
Cited by: 26
Author(s): Catherine A. McCarty, Wayne Huggins, Allison E. Aiello, Robert M. Bilder, Ahmad Hariri, Terry L. Jernigan, Erik Newman, Dharambir K. Sanghera, Timothy J. Strauman, Yi Zeng, Erin M. Ramos, Heather Junkins
Software Mentions: 1
Published: over 10 years ago

10.1186/1472-6947-7-25

Indivo: a personally controlled health record for health information exchange and communication
Cited by: 122
Author(s): Kenneth D. Mandl, William Walter Simons, William Cr Crawford, Jonathan M Abbett
Software Mentions: 1
Published: almost 17 years ago

10.1002/brb3.531

Socioeconomic status, white matter, and executive function in children
Cited by: 159
Author(s): Alexandra Ursache, Kimberly G. Noble, Genetics Study
Software Mentions: 1
Published: almost 8 years ago

10.1007/s11682-018-9990-1

Klotho gene polymorphism, brain structure and cognition in early-life development
Cited by: 5
Author(s): Clarisse F. de Vries, Roger T. Staff, Kimberly G. Noble, Ryan L. Muetzel, Meike W. Vernooij, Tonya White, Gordon D. Waiter, Alison Murray
Software Mentions: 1
Published: over 5 years ago

10.1007/s00429-020-02115-5

The effect of bilingualism on brain development from early childhood to young adulthood
Cited by: 20
Author(s): Christos Pliatsikas, Lotte Meteyard, João Veríssimo, Vincent DeLuca, Kyle F. Shattuck, Michael T. Ullman
Software Mentions: 1
Published: about 4 years ago

10.1371/journal.pcbi.1008575

Paradoxical phase response of gamma rhythms facilitates their entrainment in heterogeneous networks
Cited by: 2
Author(s): Xize Xu, Hermann Riecke
Software Mentions: 1
Published: about 3 years ago

10.1371/journal.pcbi.1002362

Minimal Size of Cell Assemblies Coordinated by Gamma Oscillations
Cited by: 50
Author(s): Christoph Börgers, Giovanni Talei Franzesi, Fiona E. N. LeBeau, Edward S. Boyden, Nancy Kopell
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0091542

Mapping of Protein-Protein Interactions of E. coli RNA Polymerase with Microfluidic Mechanical Trapping
Cited by: 5
Author(s): Steven R. Bates, Stephen R. Quake
Software Mentions: 1
Published: over 10 years ago

10.1016/j.dcn.2014.10.003

Saguenay Youth Study: A multi-generational approach to studying virtual trajectories of the brain and cardio-metabolic health
Cited by: 13
Author(s): Tomáš Paus, Zdenka Pausová, Michał Abrahamowicz, Daniel Gaudet, Gabriel Leonard, G. Bruce Pike, Louis Richer
Software Mentions: 1
Published: over 9 years ago

Ecosyste.ms: Papers

Projects: bioconductor: PING

Papers Mentioning PING 36