Projects: bioconductor: PAST

https://packages.ecosyste.ms/registries/bioconductor.org/packages/PAST

Pathway Association Study Tool (PAST)
1 version
Latest release: about 2 years ago
4,613 downloads total

Enhanced Analysis
Repository Activity:
Repository Owner: IGBB (organization)
Science Score: 100/100
Starting Score: 100 points
Bonuses:
  • +8 Academic maintainer emails
    1 maintainers with academic email addresses

Very Likely Science (100)

Papers Mentioning PAST 2,336

10.1371/journal.pone.0117473
Ubiquity and Diversity of Heterotrophic Bacterial nasA Genes in Diverse Marine Environments
Cited by: 15
Author(s): Xuexia Jiang, Hongyue Dang, Nianzhi Jiao
Software Mentions: 1
Published: almost 11 years ago
10.1371/journal.pone.0169140
Effectiveness of Devices to Monitor Biofouling and Metals Deposition on Plumbing Materials Exposed to a Full-Scale Drinking Water Distribution System
Cited by: 23
Author(s): Maneesha P. Ginige, S. Garbin, Jason Wylie, K. S. Krishna
Software Mentions: 1
Published: about 9 years ago
10.1371/journal.pone.0186476
New records of the dolphin Albertocetus meffordorum (Odontoceti: Xenorophidae) from the lower Oligocene of South Carolina: Encephalization, sensory anatomy, postcranial morphology, and ontogeny of early odontocetes
Cited by: 24
Author(s): Robert W. Boessenecker, Erum Ahmed, Jonathan H. Geisler
Software Mentions: 1
Published: about 8 years ago
10.1371/journal.pone.0242480
Anatomical changes induced by isolates of Trichoderma spp. in soybean plants
Cited by: 2
Author(s): Camilla Martins de Oliveira, Nayane Oliveira Almeida, Mara Rúbia da Rocha, Maria Helena Rezende, Renê Gonçalves da Silva Carneiro, Cirano José Ulhôa
Software Mentions: 1
Published: about 5 years ago
10.1371/journal.pone.0213176
Fungicides have complex effects on the wheat phyllosphere mycobiome
Cited by: 26
Author(s): Kamilla Knorr, Lise Nistrup Jørgensen, Mogens Nicolaisen
Software Mentions: 1
Published: almost 7 years ago
10.1371/journal.pone.0232180
Differentiating salmonid migratory ecotypes through stable isotope analysis of collagen: Archaeological and ecological applications
Cited by: 22
Author(s): Eric J. Guiry, Thomas C.A. Royle, R. G. Matson, Hillary G. M. Ward, Tyler Weir, Nicholas Waber, Thomas J. Brown, Brian P. V. Hunt, Michael H. H. Price, Bruce P. Finney, Masahide Kaeriyama, Yuxue Qin, Dongya Yang, Paul Szpak
Software Mentions: 1
Published: over 5 years ago
10.1371/journal.pone.0098454
Diversity and Communities of Foliar Endophytic Fungi from Different Agroecosystems of Coffea arabica L. in Two Regions of Veracruz, Mexico
Cited by: 47
Author(s): Aurora Saucedo‐García, Ana Luisa Anaya, Francisco J. Espinosa‐García, Marcela Hebe González
Software Mentions: 1
Published: over 11 years ago
10.1371/journal.pone.0063115
Shake a Tail Feather: The Evolution of the Theropod Tail into a Stiff Aerodynamic Surface
Cited by: 30
Author(s): Michael Pittman, Stephen M. Gatesy, Paul Upchurch, Anjali Goswami, John R. Hutchinson
Software Mentions: 1
Published: over 12 years ago
10.1371/journal.pone.0189768
Randomized clinical trial to evaluate the effect of fecal microbiota transplant for initial Clostridium difficile infection in intestinal microbiome
Cited by: 38
Author(s): Adrián Camacho-Ortíz, Eva María Gutiérrez-Delgado, José F. García-Mazcorro, Soraya Mendoza-Olazarán, Adrián Martínez-Meléndez, Laura Paláu-Dávila, Simon D. Baines, Héctor Jesús Maldonado-Garza, Elvira Garza‐González
Software Mentions: 1
Published: about 8 years ago
10.1371/journal.pone.0144919
Different Evolutionary History for Basque Diaspora Populations in USA and Argentina Unveiled by Mitochondrial DNA Analysis
Cited by: 4
Author(s): Miriam Baeta, Carolina Núñez, Sergio Cardoso, Leire Palencia-Madrid, Sergio Piñeiro‐Hermida, Miren Arriba-Barredo, María Jesús Villanueva-Millán, Marian M. de Pancorbo
Software Mentions: 1
Published: about 10 years ago
10.1371/journal.pone.0209093
Agroecological coffee management increases arbuscular mycorrhizal fungi diversity
Cited by: 34
Author(s): Paulo Prates Júnior, Bruno Coutinho Moreira, Marliane de Cássia Soares da Silva, Tomás Gomes Reis Veloso, Sidney Luiz Stürmer, Raphael Bragança Alves Fernandes, Eduardo de Sá Mendonça, Maria Catarina Megumi Kasuya
Software Mentions: 1
Published: almost 7 years ago
10.1371/journal.pone.0024447
On the Relationship between Sialomucin and Sulfomucin Expression and Hydrogenotrophic Microbes in the Human Colonic Mucosa
Cited by: 76
Author(s): Jennifer A. Croix, Franck Carbonero, Gerardo M. Nava, Mark A. Russell, E. P. Greenberg, H. Rex Gaskins
Software Mentions: 1
Published: over 14 years ago
10.1371/journal.pone.0197214
5000 years of dietary variations of prehistoric farmers in the Great Hungarian Plain
Cited by: 17
Author(s): Beatriz Gamarra, Rachel Howcroft, Ashley McCall, János Dani, Zsigmond Hajdú, Emese Gyöngyvér Nagy, L. Szabó, László Domboróczki, Ildikó Pap, Pál Raczky, Antónia Marcsik, Zsuzsanna K. Zoffmann, Tamás Hajdu, Robin N. M. Feeney, Ron Pinhasi
Software Mentions: 1
Published: over 7 years ago
10.1371/journal.pone.0073177
AFLP Polymorphisms Allow High Resolution Genetic Analysis of American Tegumentary Leishmaniasis Agents Circulating in Panama and Other Members of the Leishmania Genus
Cited by: 14
Author(s): Carlos M. Restrepo, Carolina De La Guardia, Octávio E. Sousa, José E. Calzada, Patricia L. Fernández, Ricardo Lleonart
Software Mentions: 1
Published: over 12 years ago
10.1371/journal.pone.0057770
Exploring the Diversity and Distribution of Neotropical Avian Malaria Parasites – A Molecular Survey from Southeast Brazil
Cited by: 89
Author(s): Gustavo Augusto Lacorte, Gabriel M. F. Félix, Rafael Barros Pereira Pinheiro, Anderson V. Chaves, Gilberto Almeida-Neto, Frederico S. Neves, Lemuel Olívio Leite, Fabrício R. Santos, Érika Martins Braga
Software Mentions: 1
Published: almost 13 years ago
10.1371/journal.pone.0206031
Taxonomic validation of five fish species of subfamily Barbinae from the Ganga river system of northern India using traditional and truss analyses
Cited by: 15
Author(s): Deepmala Gupta, Arvind Kumar Dwivedi, Madhu Tripathi
Software Mentions: 1
Published: about 7 years ago
10.1371/journal.pone.0081500
Metabolic Footprint Analysis Uncovers Strain Specific Overflow Metabolism and D-Isoleucine Production of Staphylococcus Aureus COL and HG001
Cited by: 39
Author(s): Kirsten Dörries, Michael Lalk
Software Mentions: 1
Published: about 12 years ago
10.1371/journal.pone.0049511
The Role of Sexual Selection and Conflict in Mediating Among-Population Variation in Mating Strategies and Sexually Dimorphic Traits in Sepsis punctum
Cited by: 14
Author(s): Caitlin Dmitriew, Wolf U. Blanckenhorn
Software Mentions: 1
Published: about 13 years ago
10.1371/journal.pone.0086644
The Evolutionary Divergence of psbA Gene in Synechococcus and Their Myoviruses in the East China Sea
Cited by: 7
Author(s): Qiang Zheng, Nianzhi Jiao, Rui Zhang, Jingjing Wei, Fei Zhang
Software Mentions: 1
Published: almost 12 years ago
10.1371/journal.pone.0171466
L1 retrotransposon expression in circulating tumor cells
Cited by: 7
Author(s): Ioannis Papasotiriou, Katerina Pantopikou, Panagiotis Apostolou
Software Mentions: 1
Published: almost 9 years ago
10.1371/journal.pone.0197512
Niche partitioning as a mechanism for locally high species diversity within a geographically limited genus of blastoid
Cited by: 1
Author(s): Ryan Morgan
Software Mentions: 1
Published: over 7 years ago
10.1371/journal.pone.0119393
Persistence of Pristine Deep-Sea Coral Gardens in the Mediterranean Sea (SW Sardinia)
Cited by: 105
Author(s): Marzia Bo, Giorgio Bavestrello, Michela Angiolillo, Lucio Calcagnile, Simonepietro Canese, Rita Cannas, Alessandro Cau, Marisa D’Elia, Filippo D’Oriano, María Cristina Follesa, Gianluca Quarta, Angelo Cau
Software Mentions: 1
Published: almost 11 years ago
10.1371/journal.pone.0103144
Urbanization Breaks Up Host-Parasite Interactions: A Case Study on Parasite Community Ecology of Rufous-Bellied Thrushes (Turdus rufiventris) along a Rural-Urban Gradient
Cited by: 55
Author(s): Cláudia Calegaro‐Marques, Suzana B. Amato
Software Mentions: 1
Published: over 11 years ago
10.1371/journal.pone.0183540
Unusual cohabitation and competition between Planktothrix rubescens and Microcystis sp. (cyanobacteria) in a subtropical reservoir (Hammam Debagh) located in Algeria
Cited by: 13
Author(s): Fatma Zohra Guellati, Hassen Touati, Kevin Tambosco, Catherine Quiblier, Jean‐François Humbert, Mourad Bensouilah
Software Mentions: 1
Published: over 8 years ago
10.1371/journal.pone.0249752
Genetic diversity and structure of Saussurea polylepis (Asteraceae) on continental islands of Korea: Implications for conservation strategies and management
Cited by: 5
Author(s): Seon A Yun, Seung‐Chul Kim
Software Mentions: 1
Published: almost 5 years ago
10.1371/journal.pone.0111848
A Preliminary Study on Oxya fuscovittata (Marschall) as an Alternative Nutrient Supplement in the Diets of Poecillia sphenops (Valenciennes)
Cited by: 8
Author(s): Arijit Ganguly, Ranita Chakravorty, Asok K. Sarkar, Dipak K. Mandal, P. Haldar, Julieta Ramos‐Elorduy, José Manuel Pino Moreno
Software Mentions: 1
Published: about 11 years ago
10.1371/journal.pone.0172759
Exceptionally prolonged tooth formation in elasmosaurid plesiosaurians
Cited by: 23
Author(s): Benjamin P. Kear, D. G. Joakim Larsson, Johan Lindgren, Martin Kundrát
Software Mentions: 1
Published: almost 9 years ago
10.1371/journal.pone.0151442
Chemical Analysis of Pottery Demonstrates Prehistoric Origin for High-Altitude Alpine Dairying
Cited by: 46
Author(s): Francesco Carrer, André Carlo Colonese, Alexandre Lucquin, Eduardo Guedes, A. Thompson, Kevin Walsh, Thomas Reitmaier, Oliver E. Craig
Software Mentions: 1
Published: over 9 years ago
10.1371/journal.pone.0166573
Provisioning the Ritual Neolithic Site of Kfar HaHoresh, Israel at the Dawn of Animal Management
Cited by: 8
Author(s): Jacqueline Meier, A. Nigel Goring-Morris, Natalie D. Munro
Software Mentions: 1
Published: about 9 years ago
10.1371/journal.pone.0091082
Gene Expression Patterns during the Early Stages of Chemically Induced Larval Metamorphosis and Settlement of the Coral Acropora millepora
Cited by: 21
Author(s): Nachshon Siboni, David Abrego, Cherie A. Motti, Jan Tebben, Tilmann Harder
Software Mentions: 1
Published: almost 12 years ago
10.1371/journal.pone.0070264
Using Boreholes as Windows into Groundwater Ecosystems
Cited by: 43
Author(s): James Sorensen, Louise Maurice, François Edwards, Dan Lapworth, Daniel S. Read, Debbie Allen, Andrew S. Butcher, Lindsay K. Newbold, Barry R. Townsend, Peter J. Williams
Software Mentions: 1
Published: over 12 years ago
10.1371/journal.pone.0143451
Refining Our Understanding of Howiesons Poort Lithic Technology: The Evidence from Grey Rocky Layer in Sibudu Cave (KwaZulu-Natal, South Africa)
Cited by: 29
Author(s): Paloma de la Peña
Software Mentions: 1
Published: about 10 years ago
10.1371/journal.pone.0139854
Effects of Very Low Dose Fast Neutrons on Cell Membrane And Secondary Protein Structure in Rat Erythrocytes
Cited by: 31
Author(s): Abdu Saeed, Gehan A. Raouf, Sherif S. Nafee, S. Shaheen, Yas Al‐Hadeethi
Software Mentions: 1
Published: over 10 years ago
10.1371/journal.pone.0093631
Characterization of Fecal Microbiota across Seven Chinese Ethnic Groups by Quantitative Polymerase Chain Reaction
Cited by: 34
Author(s): Lai‐Yu Kwok, Jiachao Zhang, Zhuang Guo, Qimu Gesudu, Yi Zheng, Jun Qiao, Dongxue Huo, Heping Zhang
Software Mentions: 1
Published: almost 12 years ago
10.1371/journal.pone.0227205
Genetic structure of the European hedgehog (Erinaceus europaeus) in Denmark
Cited by: 14
Author(s): Sophie Lund Rasmussen, Jeppe Lund Nielsen, Owen R. Jones, Thomas B. Berg, Cino Pertoldi
Software Mentions: 1
Published: almost 6 years ago