Projects: bioconductor: PAST

https://packages.ecosyste.ms/registries/bioconductor.org/packages/PAST

Pathway Association Study Tool (PAST)
1 version
Latest release: almost 3 years ago
4,613 downloads total

Enhanced Analysis
Repository Activity:
Repository Owner: IGBB (organization)
Science Score: 100/100
Starting Score: 100 points
Bonuses:
  • +8 Academic maintainer emails
    1 maintainers with academic email addresses

Very Likely Science (100)

Papers Mentioning PAST 2,336

10.1038/s41598-017-14794-y
Marine heatwave causes unprecedented regional mass bleaching of thermally resistant corals in northwestern Australia
Cited by: 116
Author(s): Morane Le Nohaïc, Claire L. Ross, Christopher E. Cornwall, Steeve Comeau, Ryan J. Lowe, Malcolm T. McCulloch, Verena Schoepf
Software Mentions: 1
Published: almost 9 years ago
10.1038/s41598-017-15823-6
DNA metabarcoding for high-throughput monitoring of estuarine macrobenthic communities
Cited by: 57
Author(s): Jorge Lobo, Shadi Shokralla, Maria Helena Costa, Mehrdad Hajibabaei, Filipe O. Costa
Software Mentions: 1
Published: almost 9 years ago
10.1038/s41598-017-15880-x
Disentangling physical and biological drivers of phytoplankton dynamics in a coastal system
Cited by: 42
Author(s): Daniela Cianelli, Domenico D’Alelio, Marco Uttieri, Diana Sarno, Adriana Zingone, Enrico Zambianchi, Maurizio Ribera d’Alcalà
Software Mentions: 1
Published: almost 9 years ago
10.1038/s41598-017-17110-w
Plant-endophytes interaction influences the secondary metabolism in Echinacea purpurea (L.) Moench: an in vitro model
Cited by: 66
Author(s): Valentina Maggini, Marinella De Leo, Alessio Mengoni, Eugenia Gallo, Elisangela Miceli, Rose Vanessa Bandeira Reidel, Sauro Biffi, Luisa Pistelli, Renato Fani, Fabio Firenzuoli, Patrizia Bogani
Software Mentions: 1
Published: almost 9 years ago
10.1038/s41598-017-17757-5
Discrete and continuous character-based disparity analyses converge to the same macroevolutionary signal: a case study from captorhinids
Cited by: 15
Author(s): Marco Romano, Neil Brocklehurst, Jörg Fröbisch
Software Mentions: 1
Published: almost 9 years ago
10.1038/s41598-017-19070-7
Widespread bone-based fluorescence in chameleons
Cited by: 41
Author(s): David Prötzel, Martin Heß, Mark D. Scherz, Martina Schwager, Anouk van ’t Padje, Frank Glaw
Software Mentions: 1
Published: over 8 years ago
10.1038/s41598-018-19505-9
Anaerobic methanotrophic communities thrive in deep submarine permafrost
Cited by: 54
Author(s): Matthias Winkel, Julia Mitzscherling, Paul Overduin, Fabian Horn, Maria Winterfeld, Ruud Rijkers, Mikhail N. Grigoriev, Christian Knoblauch, Kai Mangelsdorf, Dirk Wagner, Susanne Liebner
Software Mentions: 1
Published: over 8 years ago
10.1038/s41598-018-20011-1
Earthquake impacts on microcrustacean communities inhabiting groundwater-fed springs alter species-abundance distribution patterns
Cited by: 19
Author(s): Simone Fattorini, Tiziana Di Lorenzo, Diana M. P. Galassi
Software Mentions: 1
Published: over 8 years ago
10.1038/s41598-018-19524-6
Bacterial community in naturally fermented milk products of Arunachal Pradesh and Sikkim of India analysed by high-throughput amplicon sequencing
Cited by: 68
Author(s): H. Nakibapher Jones Shangpliang, Ranjita Rai, Santosh Keisam, Kumaraswamy Jeyaram, Jyoti Prakash Tamang
Software Mentions: 1
Published: over 8 years ago
10.1038/s41598-018-20044-6
Distinct distribution patterns of ammonia-oxidizing archaea and bacteria in sediment and water column of the Yellow River estuary
Cited by: 31
Author(s): Mingcong Li, Guangshan Wei, Wenchong Shi, Zhangli Sun, Han Li, Xiaoyun Wang, Zheng Gao
Software Mentions: 1
Published: over 8 years ago
10.1038/s41598-018-19922-w
Mitonuclear interactions may contribute to fitness of fungal hybrids
Cited by: 30
Author(s): Luana Giordano, Fabiano Sillo, Matteo Garbelotto, P. Gonthier
Software Mentions: 1
Published: over 8 years ago
10.1038/s41598-018-20688-4
A missing link in the estuarine nitrogen cycle?: Coupled nitrification-denitrification mediated by suspended particulate matter
Cited by: 24
Author(s): Wenjie Zhu, Cheng Wang, Jaclyn M. Hill, Yangyang He, Bangyi Tao, Zhihua Mao, Weixiang Wu
Software Mentions: 1
Published: over 8 years ago
10.1038/s41598-018-21080-y
Effects of water flow on submerged macrophyte-biofilm systems in constructed wetlands
Cited by: 22
Author(s): Bing Han, Songhe Zhang, Peifang Wang, Chao Wang
Software Mentions: 1
Published: over 8 years ago
10.1038/s41598-018-21158-7
Archaeology and ichnology at Gombore II-2, Melka Kunture, Ethiopia: everyday life of a mixed-age hominin group 700,000 years ago
Cited by: 55
Author(s): Flavio Altamura, Matthew R. Bennett, Kristiaan D’Août, Sabine Gaudzinski‐Windheuser, Rita Teresa Melis, Sally C. Reynolds, Margherita Mussi
Software Mentions: 1
Published: over 8 years ago
10.1038/s41598-018-21367-0
In-situ visualization of sound-induced otolith motion using hard X-ray phase contrast imaging
Cited by: 22
Author(s): Tanja Schulz‐Mirbach, Margie P. Olbinado, Alexander Rack, Alberto Mittone, A. Bravin, Roland R. Melzer, Friedrich Ladich, Martin Heß
Software Mentions: 1
Published: over 8 years ago
10.1038/s41598-018-21421-x
Hypoglycemic and hypolipidemic effect of S-allyl-cysteine sulfoxide (alliin) in DIO mice
Cited by: 74
Author(s): Baiqiang Zhai, Chuanhai Zhang, Yao Sheng, Changhui Zhao, Xiaoyun He, Wentao Xu, Kunlun Huang, Yunbo Luo
Software Mentions: 1
Published: over 8 years ago
10.1038/s41598-018-22149-4
Morphological characterization of the progenies of pure and reciprocal crosses of Pangasianodon hypophthalmus (Sauvage, 1878) and Clarias gariepinus (Burchell, 1822)
Cited by: 6
Author(s): Victor Tosin Okomoda, Ivan Chong Chu Koh, A. Hassan, Thumronk Amornsakun, Sherif Md Shahreza
Software Mentions: 1
Published: over 8 years ago
10.1038/s41598-018-22604-2
Energy allocation and behaviour in the growing broiler chicken
Cited by: 55
Author(s): Peter G. Tickle, John R. Hutchinson, Jonathan R. Codd
Software Mentions: 1
Published: over 8 years ago
10.1038/s41598-018-24283-5
High-resolution computed tomographic analysis of tooth replacement pattern of the basal neoceratopsian Liaoceratops yanzigouensis informs ceratopsian dental evolution
Cited by: 7
Author(s): Yiming He, Peter J. Makovicky, Xing Xu, Han You
Software Mentions: 1
Published: over 8 years ago
10.1038/s41598-018-25078-4
Namib Desert primary productivity is driven by cryptic microbial community N-fixation
Cited by: 30
Author(s): Jean‐Baptiste Ramond, Stephan Woodborne, Grant Hall, Mary Seely, Don A. Cowan
Software Mentions: 1
Published: over 8 years ago
10.1038/s41598-018-25597-0
Mechanical adaptation of trabecular bone morphology in the mammalian mandible
Cited by: 15
Author(s): Peter J. Watson, Laura C. Fitton, Carlo Meloro, Michael J. Fagan, Flora Gröning
Software Mentions: 1
Published: over 8 years ago
10.1038/s41598-018-27056-2
Holocene forest dynamics in central and western Mediterranean: periodicity, spatio-temporal patterns and climate influence
Cited by: 55
Author(s): Federico Di Rita, William J. Fletcher, Josu Aranbarri, Giulia Margaritelli, Fabrizio Lirer, Donatella Magri
Software Mentions: 1
Published: over 8 years ago
10.1038/s41598-018-28001-z
Variability Assessment of Aromatic Rice Germplasm by Pheno-Genomic traits and Population Structure Analysis
Cited by: 15
Author(s): Mohammad Zahidul Islam, M Khalequzzaman, M. K. Bashar, N. A. Ivy, M. A. K. Mian, Barry R. Pittendrigh, MM Haque, M. P. Ali
Software Mentions: 1
Published: about 8 years ago
10.1038/s41598-018-28581-w
AMPA receptor trafficking and its role in heterosynaptic plasticity
Cited by: 16
Author(s): Gabriela Antunes, Fábio M. Simões-de-Souza
Software Mentions: 1
Published: about 8 years ago
10.1038/s41598-018-29114-1
Population authentication of the traditional medicinal plant Cassia tora L. based on ISSR markers and FTIR analysis
Cited by: 32
Author(s): Vikas Kumar, Bijoy Krishna Roy
Software Mentions: 1
Published: about 8 years ago
10.1038/s41598-018-29181-4
Stress related epigenetic changes may explain opportunistic success in biological invasions in Antipode mussels
Cited by: 22
Author(s): Alba Ardura, Laura Clusa, Anastasija Zaiko, Eva García‐Vázquez, Laura Miralles
Software Mentions: 1
Published: about 8 years ago
10.1038/s41598-018-30112-6
A 200-year annually laminated stalagmite record of precipitation seasonality in southeastern China and its linkages to ENSO and PDO
Cited by: 40
Author(s): Haiwei Zhang, Hai Cheng, Christoph Spötl, Yanjun Cai, Ashish Sinha, Liangcheng Tan, Yi Long, Hong Yan, Gayatri Kathayat, Youfeng Ning, Xianglei Li, Fan Zhai, Jingyao Zhao, R. Lawrence Edwards
Software Mentions: 1
Published: about 8 years ago
10.1038/s41598-018-30890-z
Evolution of morphological crypsis in the Tetramorium caespitum ant species complex (Hymenoptera: Formicidae)
Cited by: 13
Author(s): Herbert C. Wagner, Alexander Gamisch, Wolfgang Arthofer, Karl Moder, Florian M. Steiner, Birgit C. Schlick-Steiner
Software Mentions: 1
Published: about 8 years ago
10.1038/s41598-018-29890-w
Holocene evolution of Portus Pisanus, the lost harbour of Pisa
Cited by: 14
Author(s): David Kaniewski, Nick Marriner, Christophe Morhange, Matteo Vacchi, Giovanni Sarti, Verónica Rossi, Mónica Bini, Marinella Pasquinucci, Cécile Allinne, Thierry Otto, Frédéric Luce, Elise Van Campo
Software Mentions: 1
Published: about 8 years ago
10.1038/s41598-018-32525-9
Assembly of Schizosaccharomyces cryophilus chromosomes and their comparative genomic analyses revealed principles of genome evolution of the haploid fission yeasts
Cited by: 8
Author(s): Lajos Ács-Szabó, László Papp, Zsuzsa Antunovics, Matthias Sipiczki, Ida Miklós
Software Mentions: 1
Published: almost 8 years ago
10.1038/s41598-018-32493-0
Changing environments during the Middle-Upper Palaeolithic transition in the eastern Cantabrian Region (Spain): direct evidence from stable isotope studies on ungulate bones
Cited by: 21
Author(s): J. G. Jones, Michael P. Richards, Lawrence Guy Straus, Hazel Reade, Jesús Altuna, Koro Mariezkurrena, Ana B. Marín-Arroyo
Software Mentions: 1
Published: almost 8 years ago
10.1038/s41598-018-34447-y
DNA barcodes of Antipode marine invertebrates in Bay of Biscay and Gulf of Lion ports suggest new biofouling challenges
Cited by: 11
Author(s): Laura Miralles, Alba Ardura, Laura Clusa, Eva García‐Vázquez
Software Mentions: 1
Published: almost 8 years ago
10.1038/s41598-018-35347-x
Bone histology provides insights into the life history mechanisms underlying dwarfing in hipparionins
Cited by: 19
Author(s): Guillem Orlandi-Oliveras, Carmen Nacarino-Meneses, George D. Koufos, Meike Köhler
Software Mentions: 1
Published: almost 8 years ago
10.1038/s41598-018-35498-x
Multi-decadal to centennial hydro-climate variability and linkage to solar forcing in the Western Mediterranean during the last 1000 years
Cited by: 26
Author(s): Yassine Ait Brahim, Jasper A. Wassenburg, F. W. Cruz, Abdelfettah Sifeddine, Denis Scholz, Lhoussaine Bouchaou, Émilie Pauline Dassié, Klaus Peter Jochum, R. Lawrence Edwards, Hai Cheng
Software Mentions: 1
Published: almost 8 years ago
10.1038/s41598-018-37118-0
Pangenome of Serratia marcescens strains from nosocomial and environmental origins reveals different populations and the links between them
Cited by: 49
Author(s): Eduardo Abreo, Nora Altier
Software Mentions: 1
Published: over 7 years ago