Projects: bioconductor: PAST

https://packages.ecosyste.ms/registries/bioconductor.org/packages/PAST

Pathway Association Study Tool (PAST)
1 version
Latest release: almost 3 years ago
4,613 downloads total

Enhanced Analysis
Repository Activity:
Repository Owner: IGBB (organization)
Science Score: 100/100
Starting Score: 100 points
Bonuses:
  • +8 Academic maintainer emails
    1 maintainers with academic email addresses

Very Likely Science (100)

Papers Mentioning PAST 2,336

10.1371/journal.pone.0154389
Comparison of Boiling and Robotics Automation Method in DNA Extraction for Metagenomic Sequencing of Human Oral Microbes
Cited by: 29
Author(s): Junya Yamagishi, Yukuto Sato, Natsuko O. Shinozaki, Bin Ye, Akito Tsuboi, Masao Nagasaki, Riu Yamashita
Software Mentions: 1
Published: over 10 years ago
10.1371/journal.pone.0227774
Differential effects of synthetic psychoactive cathinones and amphetamine stimulants on the gut microbiome in mice
Cited by: 28
Author(s): Mariana Angoa‐Pérez, Branislava Zagorac, Andrew D. Winters, Jonathan M. Greenberg, Madison M. Ahmad, Kevin R. Theis, Donald M. Kuhn
Software Mentions: 1
Published: over 6 years ago
10.1371/journal.pone.0254151
Tooth wear development in the Australian Aboriginal dentition from Yuendumu: A longitudinal study
Cited by: 0
Author(s): Jin Young Lee, Sarah Fung, Robin Yong, Sarbin Ranjitkar, John Kaidonis, Alistair R. Evans, Luca Fiorenza
Software Mentions: 1
Published: about 5 years ago
10.1371/journal.pone.0057150
Dendritic Polyglycerolsulfate Near Infrared Fluorescent (NIRF) Dye Conjugate for Non-Invasively Monitoring of Inflammation in an Allergic Asthma Mouse Model
Cited by: 34
Author(s): Stefania Biffi, Simeone Dal Monego, Christian Dullin, Chiara Garrovo, Berislav Bošnjak, Kai Licha, Pia Welker, Michelle M. Epstein, Frauke Alves
Software Mentions: 1
Published: over 13 years ago
10.3389/fmicb.2019.00688
Prevalence and Diversity of Antibiotic Resistance Genes in Swedish Aquatic Environments Impacted by Household and Hospital Wastewater
Cited by: 81
Author(s): Faisal Ahmad Khan, Bo Söderquist, Jana Jaß
Software Mentions: 1
Published: over 7 years ago
10.5402/2011/585192
Use of Pattern Recognition Analysis to Identify Underlying Relationships of Doxorubicin Derivatives Optimized for Breast Cancer Treatment
Cited by: 1
Author(s): Ronald Bartzatt
Software Mentions: 1
Published: about 15 years ago
10.3389/fmicb.2015.01180
Shifts in the pelagic ammonia-oxidizing microbial communities along the eutrophic estuary of Yong River in Ningbo City, China
Cited by: 24
Author(s): Qiufang Zhang, Fangyuan Tang, Yilong Zhou, Jiexin Xu, Heping Chen, Ming-Kuang Wang, Hendrikus J. Laanbroek
Software Mentions: 1
Published: almost 11 years ago
10.1371/journal.pone.0246665
Ecological restoration of habitats invaded by Leucanthemum vulgare that alters key ecosystem functions
Cited by: 3
Author(s): Mohd Asgar Khan, K. Jahir Hussain, Manzoor Ahmad Shah
Software Mentions: 1
Published: over 5 years ago
10.1186/s13046-017-0544-y
Rapamycin (mTORC1 inhibitor) reduces the production of lactate and 2-hydroxyglutarate oncometabolites in IDH1 mutant fibrosarcoma cells
Cited by: 13
Author(s): Zoltán Hujber, Gábor Petővári, Norbert Szoboszlai, Titanilla Dankó, Noémi Nagy, Csilla Kriston, Ildikó Krencz, Sándor Paku, Olivér Ozohanics, László Drahos, A. Jeney, Anna Sebestyén
Software Mentions: 1
Published: over 9 years ago
10.1371/journal.pone.0201741
Evaluating freshwater macroinvertebrates from eDNA metabarcoding: A river Nalón case study
Cited by: 48
Author(s): Sara Fernández, S. E. Rodriguez, José Luis Martínez, Yaisel J. Borrell, Alba Ardura, Eva García‐Vázquez
Software Mentions: 1
Published: about 8 years ago
10.3389/fmicb.2018.00968
Genetic Characterization and Diversity of Rhizobium Isolated From Root Nodules of Mid-Altitude Climbing Bean (Phaseolus vulgaris L.) Varieties
Cited by: 39
Author(s): Gilbert Koskey, Simon Wambui Mburu, Jacinta M. Kimiti, Omwoyo Ombori, John M. Maingi, Ezekiel Mugendi Njeru
Software Mentions: 1
Published: over 8 years ago
10.1371/journal.pone.0104990
Detection of Genome Donor Species of Neglected Tetraploid Crop Vigna reflexo-pilosa (Créole Bean), and Genetic Structure of Diploid Species Based on Newly Developed EST-SSR Markers from Azuki Bean (Vigna angularis)
Cited by: 40
Author(s): Sompong Chankaew, Takehisa Isemura, Sachiko Isobe, Akito Kaga, Norihiko Tomooka, Prakit Somta, Hideki Hirakawa, Kenta Shirasawa, Duncan A. Vaughan, Peerasak Srinives
Software Mentions: 1
Published: about 12 years ago
10.1371/journal.pone.0057486
Identification of Cryptic Anopheles Mosquito Species by Molecular Protein Profiling
Cited by: 80
Author(s): Pie Müller, Valentin Pflüger, Matthias Wittwer, Dominik Ziegler, Fabrice Chandre, Frédéric Simard, Christian Lengeler
Software Mentions: 1
Published: over 13 years ago
10.1186/s13046-020-01729-1
Impact of extracellular matrix stiffness on genomic heterogeneity in MYCN-amplified neuroblastoma cell line
Cited by: 25
Author(s): Amparo López-Carrasco, Susana Martín-Vañó, Rebeca Burgos‐Panadero, Ezequiel Monferrer, Ana P. Berbegall, Beatriz Fernández-Blanco, Samuel Navarro, Rosa Noguera
Software Mentions: 1
Published: almost 6 years ago
10.1371/journal.pone.0169971
A New Ophthalmosaurid (Ichthyosauria) from Svalbard, Norway, and Evolution of the Ichthyopterygian Pelvic Girdle
Cited by: 24
Author(s): Lene Liebe Delsett, Aubrey Jane Roberts, Patrick S. Druckenmiller, Jørn H. Hurum
Software Mentions: 1
Published: over 9 years ago
10.1371/journal.pone.0130334
The Role of Storage Lipids in the Relation between Fecundity, Locomotor Activity, and Lifespan of Drosophila melanogaster Longevity-Selected and Control Lines
Cited by: 16
Author(s): Neda Nasiri Moghadam, Martin Holmstrup, Tommaso Manenti, Marie Brandt Mouridsen, Cino Pertoldi, Volker Loeschcke
Software Mentions: 1
Published: about 11 years ago
10.3389/fmicb.2018.03028
Leaf Epiphytic Bacteria of Plants Colonizing Mine Residues: Possible Exploitation for Remediation of Air Pollutants
Cited by: 7
Author(s): Ariadna S. Sánchez-López, Ma. del Carmen A. González-Chávez, Fernando A. Solís-Dominguez, Rogelio Carrillo-González, Greta Rosas-Saito
Software Mentions: 1
Published: almost 8 years ago
10.3389/fmicb.2015.01325
Natural Sunlight Shapes Crude Oil-Degrading Bacterial Communities in Northern Gulf of Mexico Surface Waters
Cited by: 71
Author(s): Hernando P. Bacosa, Zhanfei Liu, Deana L. Erdner
Software Mentions: 1
Published: almost 11 years ago
10.3389/fmicb.2015.00285
pH levels drive bacterial community structure in sediments of the Qiantang River as determined by 454 pyrosequencing
Cited by: 88
Author(s): Shuai Liu, Hongxing Ren, Li‐dong Shen, Liping Lou, Guangming Tian, Ping Zheng, Baolan Hu
Software Mentions: 1
Published: over 11 years ago
10.1007/s00484-018-1619-y
Impact of climate on the population dynamics of an alpine ungulate: a long-term study of the Tatra chamois Rupicapra rupicapra tatrica
Cited by: 10
Author(s): Michał Ciach, Łukasz Pęksa
Software Mentions: 1
Published: almost 8 years ago
10.3389/fmicb.2019.01067
Influence of Environmental Drivers and Potential Interactions on the Distribution of Microbial Communities From Three Permanently Stratified Antarctic Lakes
Cited by: 17
Author(s): Wei Li, Rachael M. Morgan‐Kiss
Software Mentions: 1
Published: over 7 years ago
10.3389/fmicb.2016.01883
Phylogenetic Signals of Salinity and Season in Bacterial Community Composition Across the Salinity Gradient of the Baltic Sea
Cited by: 64
Author(s): Daniel P. R. Herlemann, Daniel Lundin, Anders F. Andersson, Matthias Labrenz, Klaus Jürgens
Software Mentions: 1
Published: almost 10 years ago
10.3389/fmicb.2018.02900
Predominant Yeasts During Artisanal Mezcal Fermentation and Their Capacity to Ferment Maguey Juice
Cited by: 15
Author(s): Hipócrates Nolasco‐Cancino, Jorge A. Santiago‐Urbina, Carmen Wacher, Francisco Ruı́z-Terán
Software Mentions: 1
Published: almost 8 years ago
10.3390/ijms19092578
Gut Bacterial Communities of Dendroctonus valens and D. mexicanus (Curculionidae: Scolytinae): A Metagenomic Analysis across Different Geographical Locations in Mexico
Cited by: 17
Author(s): Juan Alfredo Hernández-García, Román González-Escobedo, Carlos Iván Briones-Roblero, Claudia Cano-Ramírez, Flor N. Rivera-Orduña, Gerardo Zúñiga
Software Mentions: 1
Published: about 8 years ago
10.1371/journal.pone.0129878
Evaluation of a Push-Pull Approach for Aedes aegypti (L.) Using a Novel Dispensing System for Spatial Repellents in the Laboratory and in a Semi-Field Environment
Cited by: 18
Author(s): Ulla Obermayr, Joachim Rüther, Ulrich R. Bernier, Andreas Rose, Martin Geier
Software Mentions: 1
Published: about 11 years ago
10.1371/journal.pone.0110029
Latitudinal Environmental Niches and Riverine Barriers Shaped the Phylogeography of the Central Chilean Endemic Dioscorea humilis (Dioscoreaceae)
Cited by: 10
Author(s): Juan Viruel, Pilar Catalán, José Gabriel Segarra‐Moragues
Software Mentions: 1
Published: almost 12 years ago
10.3389/fmicb.2016.00460
Spatiotemporal Dynamics of Vibrio spp. within the Sydney Harbour Estuary
Cited by: 54
Author(s): Nachshon Siboni, Varunan Balaraju, Richard L. Carney, Maurizio Labbate, Justin R. Seymour
Software Mentions: 1
Published: over 10 years ago
10.1371/journal.pone.0215466
Glyphosate, but not its metabolite AMPA, alters the honeybee gut microbiota
Cited by: 95
Author(s): Nicolas Blot, Loïs Veillat, Régis Rouzé, Hélène Delatte
Software Mentions: 1
Published: over 7 years ago
10.3390/jof4010017
Fungi as Endophytes in Artemisia thuscula: Juxtaposed Elements of Diversity and Phylogeny
Cited by: 18
Author(s): Andreea Cosoveanu, Samuel Rodriguez Sabina, Raimundo Cabrera
Software Mentions: 1
Published: over 8 years ago
10.3389/fmicb.2018.00077
Bacteriome from Pinus arizonica and P. durangensis: Diversity, Comparison of Assemblages, and Overlapping Degree with the Gut Bacterial Community of a Bark Beetle That Kills Pines
Cited by: 14
Author(s): Román González-Escobedo, Carlos Iván Briones-Roblero, Rosa María Pineda-Mendoza, Flor N. Rivera-Orduña, Gerardo Zúñiga
Software Mentions: 1
Published: over 8 years ago
10.3389/fmicb.2015.00647
Microbially induced corrosion of carbon steel in deep groundwater environment
Cited by: 47
Author(s): Pauliina Rajala, Leena Carpén, Mikko Vepsäläinen, Mari Raulio, Elina Sohlberg, Malin Bomberg
Software Mentions: 1
Published: about 11 years ago
10.3389/fmicb.2018.00059
Impact of Chemical and Biological Fungicides Applied to Grapevine on Grape Biofilm, Must, and Wine Microbial Diversity
Cited by: 25
Author(s): Rocío Escribano-Viana, Isabel López‐Alfaro, Rosa López, Pilar Santamaría, Ana Rosa Gutiérrez, Lucía González‐Arenzana
Software Mentions: 1
Published: over 8 years ago
10.3389/fmicb.2016.00670
The Oenological Potential of Hanseniaspora uvarum in Simultaneous and Sequential Co-fermentation with Saccharomyces cerevisiae for Industrial Wine Production
Cited by: 116
Author(s): Mariana Tristezza, Maria Tufariello, Vittorio Capozzi, Giuseppe Spano, Giovanni Mita, Francesco Grieco
Software Mentions: 1
Published: over 10 years ago
10.3389/fmicb.2019.01362
Archaeal Communities in Deep Terrestrial Subsurface Underneath the Deccan Traps, India
Cited by: 14
Author(s): Avishek Dutta, Pinaki Sar, Jayeeta Sarkar, Srimanti Dutta Gupta, Abhishek Gupta, Himadri Bose, Abhijit Mukherjee, Sukanta Roy
Software Mentions: 1
Published: about 7 years ago
10.3389/fmicb.2020.00343
Variation in the Soil Prokaryotic Community Under Simulated Warming and Rainfall Reduction in Different Water Table Peatlands of the Zoige Plateau
Cited by: 3
Author(s): Wei Li, Huai Chen, Zhiying Yan, Gang Yang, Junpeng Rui, Ning Wu, Yixin He
Software Mentions: 1
Published: over 6 years ago