Projects: bioconductor: PAST

https://packages.ecosyste.ms/registries/bioconductor.org/packages/PAST

Pathway Association Study Tool (PAST)
1 version
Latest release: almost 3 years ago
4,613 downloads total

Enhanced Analysis
Repository Activity:
Repository Owner: IGBB (organization)
Science Score: 100/100
Starting Score: 100 points
Bonuses:
  • +8 Academic maintainer emails
    1 maintainers with academic email addresses

Very Likely Science (100)

Papers Mentioning PAST 2,336

10.1371/journal.pone.0125074
Mixed Signals? Morphological and Molecular Evidence Suggest a Color Polymorphism in Some Neotropical Polythore Damselflies
Cited by: 9
Author(s): Melissa Sánchez Herrera, William R. Kuhn, M. Olalla Lorenzo-Carballa, Kathleen M. Harding, Nikole Ankrom, Thomas N. Sherratt, Joachim Hoffmann, Hans Van Gossum, Jessica L. Ware, Adolfo Cordero‐Rivera, Christopher D. Beatty
Software Mentions: 1
Published: over 11 years ago
10.1371/journal.pone.0220188
Complementary approaches to tooth wear analysis in Tritylodontidae (Synapsida, Mammaliamorpha) reveal a generalist diet
Cited by: 7
Author(s): Daniela C. Kalthoff, Ellen Schulz‐Kornas, Ian J. Corfe, Thomas Martin, Stephen McLoughlin, Julia A. Schultz
Software Mentions: 1
Published: about 7 years ago
10.1371/journal.pone.0098784
Multifaceted Defense against Antagonistic Microbes in Developing Offspring of the Parasitoid Wasp Ampulex compressa (Hymenoptera, Ampulicidae)
Cited by: 11
Author(s): Katharina Weiß, Christopher Parzefall, Gudrun Herzner
Software Mentions: 1
Published: about 12 years ago
10.1371/journal.pone.0200550
Soil organic matter and CO2 fluxes in small tropical watersheds under forest and cacao agroforestry
Cited by: 11
Author(s): Eline Nayara Dantas da Costa, Marcelo Friederichs Landim de Souza, Paulo César Lima Marrocos, Dan Lobão, Daniela Mariano Lopes da Silva
Software Mentions: 1
Published: about 8 years ago
10.1371/journal.pone.0127866
Medicinal Plants Recommended by the World Health Organization: DNA Barcode Identification Associated with Chemical Analyses Guarantees Their Quality
Cited by: 117
Author(s): Rafael Melo Palhares, Marcela Gonçalves Drummond, Bruno S. A. F. Brasil, Gustavo Pereira Cosenza, Maria das Graças Lins Brandão, Guilherme Oliveira
Software Mentions: 1
Published: about 11 years ago
10.1371/journal.pone.0233626
ATR-FTIR spectroscopy as adjunct method to the microscopic examination of hematoxylin and eosin-stained tissues in diagnosing lung cancer
Cited by: 22
Author(s): Ruth Bangaoil, Abegail Santillan, Lara Mae Angeles, Lorenzo Abanilla, Antonio Lim, Ma. Cristina Ramos, Allan Fellizar, Leonardo A. Guevarra, Pia Marie Albano
Software Mentions: 1
Published: about 6 years ago
10.1371/journal.pone.0225833
Composition and structure of the culturable gut bacterial communities in Anopheles albimanus from Colombia
Cited by: 14
Author(s): Yadira Galeano-Castañeda, Paula Andrea Urrea-Aguirre, Stefani Piedrahita, Priscila Bascuñán, Margarita M. Correa
Software Mentions: 1
Published: over 6 years ago
10.1371/journal.pone.0215466
Glyphosate, but not its metabolite AMPA, alters the honeybee gut microbiota
Cited by: 95
Author(s): Nicolas Blot, Loïs Veillat, Régis Rouzé, Hélène Delatte
Software Mentions: 1
Published: over 7 years ago
10.1371/journal.pone.0110029
Latitudinal Environmental Niches and Riverine Barriers Shaped the Phylogeography of the Central Chilean Endemic Dioscorea humilis (Dioscoreaceae)
Cited by: 10
Author(s): Juan Viruel, Pilar Catalán, José Gabriel Segarra‐Moragues
Software Mentions: 1
Published: almost 12 years ago
10.1371/journal.pone.0129878
Evaluation of a Push-Pull Approach for Aedes aegypti (L.) Using a Novel Dispensing System for Spatial Repellents in the Laboratory and in a Semi-Field Environment
Cited by: 18
Author(s): Ulla Obermayr, Joachim Rüther, Ulrich R. Bernier, Andreas Rose, Martin Geier
Software Mentions: 1
Published: about 11 years ago
10.1371/journal.pone.0130334
The Role of Storage Lipids in the Relation between Fecundity, Locomotor Activity, and Lifespan of Drosophila melanogaster Longevity-Selected and Control Lines
Cited by: 16
Author(s): Neda Nasiri Moghadam, Martin Holmstrup, Tommaso Manenti, Marie Brandt Mouridsen, Cino Pertoldi, Volker Loeschcke
Software Mentions: 1
Published: about 11 years ago
10.1371/journal.pone.0057486
Identification of Cryptic Anopheles Mosquito Species by Molecular Protein Profiling
Cited by: 80
Author(s): Pie Müller, Valentin Pflüger, Matthias Wittwer, Dominik Ziegler, Fabrice Chandre, Frédéric Simard, Christian Lengeler
Software Mentions: 1
Published: over 13 years ago
10.1371/journal.pone.0104990
Detection of Genome Donor Species of Neglected Tetraploid Crop Vigna reflexo-pilosa (Créole Bean), and Genetic Structure of Diploid Species Based on Newly Developed EST-SSR Markers from Azuki Bean (Vigna angularis)
Cited by: 40
Author(s): Sompong Chankaew, Takehisa Isemura, Sachiko Isobe, Akito Kaga, Norihiko Tomooka, Prakit Somta, Hideki Hirakawa, Kenta Shirasawa, Duncan A. Vaughan, Peerasak Srinives
Software Mentions: 1
Published: almost 12 years ago
10.1371/journal.pone.0201741
Evaluating freshwater macroinvertebrates from eDNA metabarcoding: A river Nalón case study
Cited by: 48
Author(s): Sara Fernández, S. E. Rodriguez, José Luis Martínez, Yaisel J. Borrell, Alba Ardura, Eva García‐Vázquez
Software Mentions: 1
Published: about 8 years ago
10.1371/journal.pone.0246665
Ecological restoration of habitats invaded by Leucanthemum vulgare that alters key ecosystem functions
Cited by: 3
Author(s): Mohd Asgar Khan, K. Jahir Hussain, Manzoor Ahmad Shah
Software Mentions: 1
Published: over 5 years ago
10.1371/journal.pone.0057150
Dendritic Polyglycerolsulfate Near Infrared Fluorescent (NIRF) Dye Conjugate for Non-Invasively Monitoring of Inflammation in an Allergic Asthma Mouse Model
Cited by: 34
Author(s): Stefania Biffi, Simeone Dal Monego, Christian Dullin, Chiara Garrovo, Berislav Bošnjak, Kai Licha, Pia Welker, Michelle M. Epstein, Frauke Alves
Software Mentions: 1
Published: over 13 years ago
10.1371/journal.pone.0254151
Tooth wear development in the Australian Aboriginal dentition from Yuendumu: A longitudinal study
Cited by: 0
Author(s): Jin Young Lee, Sarah Fung, Robin Yong, Sarbin Ranjitkar, John Kaidonis, Alistair R. Evans, Luca Fiorenza
Software Mentions: 1
Published: about 5 years ago
10.1371/journal.pone.0227774
Differential effects of synthetic psychoactive cathinones and amphetamine stimulants on the gut microbiome in mice
Cited by: 28
Author(s): Mariana Angoa‐Pérez, Branislava Zagorac, Andrew D. Winters, Jonathan M. Greenberg, Madison M. Ahmad, Kevin R. Theis, Donald M. Kuhn
Software Mentions: 1
Published: over 6 years ago
10.1371/journal.pone.0144866
Intra-Site Variability in the Still Bay Fauna at Blombos Cave: Implications for Explanatory Models of the Middle Stone Age Cultural and Technological Evolution
Cited by: 30
Author(s): Emmanuel Discamps, Christopher S. Henshilwood
Software Mentions: 1
Published: over 10 years ago
10.1371/journal.pone.0116585
Predominant Campylobacter jejuni Sequence Types Persist in Finnish Chicken Production
Cited by: 39
Author(s): Ann-Katrin Llarena, Adeline Huneau, Marjaana Hakkinen, Marja‐Liisa Hänninen
Software Mentions: 1
Published: over 11 years ago
10.1371/journal.pone.0238888
A sting affair: A global quantitative exploration of bee, wasp and ant hosts of velvet ants
Cited by: 6
Author(s): Federico Ronchetti, Carlo Polidori
Software Mentions: 1
Published: almost 6 years ago
10.1371/journal.pone.0147633
Population Genetic Structure and Reproductive Strategy of the Introduced Grass Centotheca lappacea in Tropical Land-Use Systems in Sumatra
Cited by: 0
Author(s): Ladislav Hodač, Fuad Bahrul Ulum, Nicole Opfermann, Natalie Breidenbach, Diego Hojsgaard, S. Tjitrosoedirdjo, Barbara Vornam, Reiner Finkeldey, Elvira Hörandl
Software Mentions: 1
Published: over 10 years ago
10.1371/journal.pone.0218834
Oil degradation potential of microbial communities in water and sediment of Baltic Sea coastal area
Cited by: 28
Author(s): Hanna Miettinen, Malin Bomberg, Mari Nyyssönen, Anna Reunamo, Kirsten S. Jørgensen, Minna Vikman
Software Mentions: 1
Published: about 7 years ago
10.1371/journal.pone.0117473
Ubiquity and Diversity of Heterotrophic Bacterial nasA Genes in Diverse Marine Environments
Cited by: 15
Author(s): Xuexia Jiang, Hongyue Dang, Nianzhi Jiao
Software Mentions: 1
Published: over 11 years ago
10.1371/journal.pone.0169140
Effectiveness of Devices to Monitor Biofouling and Metals Deposition on Plumbing Materials Exposed to a Full-Scale Drinking Water Distribution System
Cited by: 23
Author(s): Maneesha P. Ginige, S. Garbin, Jason Wylie, K. S. Krishna
Software Mentions: 1
Published: over 9 years ago
10.1371/journal.pone.0186476
New records of the dolphin Albertocetus meffordorum (Odontoceti: Xenorophidae) from the lower Oligocene of South Carolina: Encephalization, sensory anatomy, postcranial morphology, and ontogeny of early odontocetes
Cited by: 24
Author(s): Robert W. Boessenecker, Erum Ahmed, Jonathan H. Geisler
Software Mentions: 1
Published: almost 9 years ago
10.1371/journal.pone.0242480
Anatomical changes induced by isolates of Trichoderma spp. in soybean plants
Cited by: 2
Author(s): Camilla Martins de Oliveira, Nayane Oliveira Almeida, Mara Rúbia da Rocha, Maria Helena Rezende, Renê Gonçalves da Silva Carneiro, Cirano José Ulhôa
Software Mentions: 1
Published: over 5 years ago
10.1371/journal.pone.0213176
Fungicides have complex effects on the wheat phyllosphere mycobiome
Cited by: 26
Author(s): Kamilla Knorr, Lise Nistrup Jørgensen, Mogens Nicolaisen
Software Mentions: 1
Published: over 7 years ago
10.1371/journal.pone.0232180
Differentiating salmonid migratory ecotypes through stable isotope analysis of collagen: Archaeological and ecological applications
Cited by: 22
Author(s): Eric J. Guiry, Thomas C.A. Royle, R. G. Matson, Hillary G. M. Ward, Tyler Weir, Nicholas Waber, Thomas J. Brown, Brian P. V. Hunt, Michael H. H. Price, Bruce P. Finney, Masahide Kaeriyama, Yuxue Qin, Dongya Yang, Paul Szpak
Software Mentions: 1
Published: over 6 years ago
10.1371/journal.pone.0098454
Diversity and Communities of Foliar Endophytic Fungi from Different Agroecosystems of Coffea arabica L. in Two Regions of Veracruz, Mexico
Cited by: 47
Author(s): Aurora Saucedo‐García, Ana Luisa Anaya, Francisco J. Espinosa‐García, Marcela Hebe González
Software Mentions: 1
Published: about 12 years ago
10.1371/journal.pone.0063115
Shake a Tail Feather: The Evolution of the Theropod Tail into a Stiff Aerodynamic Surface
Cited by: 30
Author(s): Michael Pittman, Stephen M. Gatesy, Paul Upchurch, Anjali Goswami, John R. Hutchinson
Software Mentions: 1
Published: about 13 years ago
10.1371/journal.pone.0189768
Randomized clinical trial to evaluate the effect of fecal microbiota transplant for initial Clostridium difficile infection in intestinal microbiome
Cited by: 38
Author(s): Adrián Camacho-Ortíz, Eva María Gutiérrez-Delgado, José F. García-Mazcorro, Soraya Mendoza-Olazarán, Adrián Martínez-Meléndez, Laura Paláu-Dávila, Simon D. Baines, Héctor Jesús Maldonado-Garza, Elvira Garza‐González
Software Mentions: 1
Published: over 8 years ago
10.1371/journal.pone.0144919
Different Evolutionary History for Basque Diaspora Populations in USA and Argentina Unveiled by Mitochondrial DNA Analysis
Cited by: 4
Author(s): Miriam Baeta, Carolina Núñez, Sergio Cardoso, Leire Palencia-Madrid, Sergio Piñeiro‐Hermida, Miren Arriba-Barredo, María Jesús Villanueva-Millán, Marian M. de Pancorbo
Software Mentions: 1
Published: over 10 years ago
10.1371/journal.pone.0209093
Agroecological coffee management increases arbuscular mycorrhizal fungi diversity
Cited by: 34
Author(s): Paulo Prates Júnior, Bruno Coutinho Moreira, Marliane de Cássia Soares da Silva, Tomás Gomes Reis Veloso, Sidney Luiz Stürmer, Raphael Bragança Alves Fernandes, Eduardo de Sá Mendonça, Maria Catarina Megumi Kasuya
Software Mentions: 1
Published: over 7 years ago
10.1371/journal.pone.0024447
On the Relationship between Sialomucin and Sulfomucin Expression and Hydrogenotrophic Microbes in the Human Colonic Mucosa
Cited by: 76
Author(s): Jennifer A. Croix, Franck Carbonero, Gerardo M. Nava, Mark A. Russell, E. P. Greenberg, H. Rex Gaskins
Software Mentions: 1
Published: almost 15 years ago