Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: bioconductor: NOISeq

https://packages.ecosyste.ms/registries/bioconductor.org/packages/NOISeq

Exploratory analysis and differential expression for RNA-seq data
1 version
Latest release: about 1 year ago
5 dependent packages
94,516 downloads total

Papers Mentioning NOISeq 321

10.3389/fgene.2021.625741

Loss of Long Distance Co-Expression in Lung Cancer
Cited by: 16
Author(s): Sergio Andonegui-Elguera, José María Zamora-Fuentes, Jesús Espinal-Enríquez, Enrique Hernández‐Lemus
Software Mentions: 1
Published: over 3 years ago

10.3389/fgene.2019.00301

The Impact of Chronic Heat Stress on the Growth, Survival, Feeding, and Differential Gene Expression in the Sea Urchin Strongylocentrotus intermedius
Cited by: 27
Author(s): Yaoyao Zhan, Jiaxiang Li, Jiangtao Sun, Weijie Zhang, Yingying Li, Donyao Cui, Wanbin Hu, Yaqing Chang
Software Mentions: 1
Published: over 5 years ago

10.3389/fgene.2020.00589

Insecticidal Activity of Artemisia vulgaris Essential Oil and Transcriptome Analysis of Tribolium castaneum in Response to Oil Exposure
Cited by: 39
Author(s): Shanshan Gao, Kunpeng Zhang, Luting Wei, Guanyun Wei, Weixi Xiong, Ying Lu, Yonglei Zhang, Aoxiang Gao, Bin Li
Software Mentions: 1
Published: over 4 years ago

10.1038/s41419-019-1384-9

RREB1-induced upregulation of the lncRNA AGAP2-AS1 regulates the proliferation and migration of pancreatic cancer partly through suppressing ANKRD1 and ANGPTL4
Cited by: 73
Author(s): Bingqing Hui, Hao Ji, Yetao Xu, Juan Wang, Zhonghua Ma, Chongguo Zhang, Yan Zhou
Software Mentions: 1
Published: over 5 years ago

10.7554/eLife.01287

Regulated aggregative multicellularity in a close unicellular relative of metazoa
Cited by: 135
Author(s): Arnau Sebé-Pedrós, Manuel Irimia, Javier del Campo, Helena Parra-Acero, Carsten Russ, Chad Nusbaum, Benjamin J. Blencowe, Iñaki Ruiz‐Trillo
Software Mentions: 1
Published: almost 11 years ago

10.1038/s41419-017-0066-8

FBXL10 contributes to the development of diffuse large B-cell lymphoma by epigenetically enhancing ERK1/2 signaling pathway
Cited by: 13
Author(s): Xiujuan Zhao, Xing Wang, Qian Li, Wanbiao Chen, Na Zhang, Yu Kong, Junqiang Lv, Lei Cao, Dan Lin, Xi Wang, Guogang Xu, Xudong Wu
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41419-020-03343-7

Period1 mediates rhythmic metabolism of toxins by interacting with CYP2E1
Cited by: 9
Author(s): Weifeng Ge, Tao Wang, Yang Zhao, Yuxuan Yang, Qi Sun, Xiao Yang, Yan Gao, Xi Xu, Jianfa Zhang
Software Mentions: 1
Published: almost 4 years ago

10.3389/fgene.2014.00118

Toxic effects of decabromodiphenyl ether (BDE-209) on human embryonic kidney cells
Cited by: 21
Author(s): Min Li, Zhenping Liu, Liang Gu, Rong Yin, Huarong Li, Xiaobai Zhang, Tongcheng Cao, Cizhong Jiang
Software Mentions: 1
Published: over 10 years ago

10.1038/s41418-018-0157-9

Uric acid: a potent molecular contributor to pluripotent stem cell cardiac differentiation via mesoderm specification
Cited by: 13
Author(s): Bingbing Ke, Yujie Zeng, Zhihong Zhao, Fuzhu Han, Taoyan liu, Jingyi Wang, Anila Khalique, Wenjing Lü, James J.H. Chong, Feng Lan, Hua He
Software Mentions: 1
Published: over 6 years ago

10.3389/fimmu.2020.569671

Systems Immunology Analysis Reveals an Immunomodulatory Effect of Snail-p53 Binding on Neutrophil- and T Cell-Mediated Immunity in KRAS Mutant Non-Small Cell Lung Cancer
Cited by: 5
Author(s): Sarah Hammoudeh, Thenmozhi Venkatachalam, Abdul Wahid Ansari, Riyad Bendardaf, Qutayba Hamid, Mohamed Rahmani, Rifat Hamoudi
Software Mentions: 1
Published: almost 4 years ago

10.1098/rsob.160029

Sterol metabolism in the filasterean <i>Capsaspora owczarzaki</i> has features that resemble both fungi and animals
Cited by: 10
Author(s): Sebastián R. Najle, María C. Ríos de Molina, Iñaki Ruiz‐Trillo, Antonio D. Uttaro
Software Mentions: 1
Published: over 8 years ago

10.3390/cancers10120520

Oncogenic Activation of Nrf2, Though as a Master Antioxidant Transcription Factor, Liberated by Specific Knockout of the Full-Length Nrf1α that Acts as a Dominant Tumor Repressor
Cited by: 36
Author(s): Lu Qiu, Meng Wang, Shaofan Hu, Xufang Ru, Yong Ren, Zhengwen Zhang, Siwang Yu, Yiguo Zhang
Software Mentions: 1
Published: almost 6 years ago

10.3389/fimmu.2019.00149

Transcriptome Profile in Hippocampus During Acute Inflammatory Response to Surgery: Toward Early Stage of PND
Cited by: 17
Author(s): Xuwu Xiang, Yang Yu, Xiaodong Tang, Manli Chen, Yan‐Song Zheng, Shengmei Zhu
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0221540

Computational search for UV radiation resistance strategies in Deinococcus swuensis isolated from Paramo ecosystems
Cited by: 6
Author(s): Jorge Díaz-Riaño, Leonardo Posada, Iván Camilo Acosta, Carlos A. Ruiz-Pérez, Catalina García-Castillo, Alejandro Reyes, María Mercedes Zambrano
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pone.0066521

Dissecting the Characteristics and Dynamics of Human Protein Complexes at Transcriptome Cascade Using RNA-Seq Data
Cited by: 3
Author(s): Geng Chen, Jiwei Chen, Caiping Shi, Leming Shi, Weida Tong, Tieliu Shi
Software Mentions: 1
Published: over 11 years ago

10.3389/fmicb.2019.00452

A Comprehensive Analysis of the Small GTPases Ypt7 Involved in the Regulation of Fungal Development and Secondary Metabolism in Monascus ruber M7
Cited by: 16
Author(s): Jiao Liu, Ming Lei, Youxiang Zhou, Fusheng Chen
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2020.597828

Creation of a Low-Alcohol-Production Yeast by a Mutated SPT15 Transcription Regulator Triggers Transcriptional and Metabolic Changes During Wine Fermentation
Cited by: 7
Author(s): Qing Du, Yanlin Liu, Yue Song, Yi Qin
Software Mentions: 1
Published: almost 4 years ago

10.1371/journal.pone.0193897

Comprehensive transcriptome analysis and flavonoid profiling of Ginkgo leaves reveals flavonoid content alterations in day–night cycles
Cited by: 30
Author(s): Jun Ni, Lili Dong, Zhifang Jiang, Xiuli Yang, Ziying Chen, Yuhuan Wu, Meifeng Xu
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms18091975

Complementary RNA-Sequencing Based Transcriptomics and iTRAQ Proteomics Reveal the Mechanism of the Alleviation of Quinclorac Stress by Salicylic Acid in Oryza sativa ssp. japonica
Cited by: 41
Author(s): Jian Wang, Faisal Islam, Lan Li, Meijuan Long, Chong Yang, Xiaoli Jin, Basharat Ali, Bizeng Mao, Weijun Zhou
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0212449

Functional analysis finds differences on the muscle transcriptome of pigs fed an n-3 PUFA-enriched diet with or without antioxidant supplementations
Cited by: 6
Author(s): Marika Vitali, Rubina Sirri, Martina Zappaterra, Paolo Zambonelli, Giulia Giannini, Domenico Pietro Lo Fiego, Roberta Davoli
Software Mentions: 1
Published: almost 6 years ago

10.3389/fmicb.2019.00318

Nutritional Interventions Improved Rumen Functions and Promoted Compensatory Growth of Growth-Retarded Yaks as Revealed by Integrated Transcripts and Microbiome Analyses
Cited by: 39
Author(s): Rui Hu, Huawei Zou, Zhisheng Wang, Binghai Cao, Quanhui Peng, Xiaoping Jing, Yixin Wang, Yaqun Shao, Zhaoxi Pei, Xiangfei Zhang, Bai Xue, Lizhi Wang, Suonan Zhao, Yuqing Zhou, Xiangying Kong
Software Mentions: 1
Published: over 5 years ago