bioconductor: NOISeq | Projects | Ecosyste.ms: Papers

10.1371/journal.pone.0151529

Effect of Temperature Downshift on the Transcriptomic Responses of Chinese Hamster Ovary Cells Using Recombinant Human Tissue Plasminogen Activator Production Culture
Cited by: 50
Author(s): Andrea Bedoya-López, Karel Estrada, Alejandro Sánchez-Flores, Octavio T. Ramı́rez, Claudia Altamirano, Lorenzo Segovia, Juan Miranda-Ríos, Mauricio A. Trujillo‐Roldán, Norma A. Valdez‐Cruz
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0158899

Illumina Sequencing Reveals Aberrant Expression of MicroRNAs and Their Variants in Whitefish (Coregonus lavaretus) Liver after Exposure to Microcystin-LR
Cited by: 20
Author(s): Paweł Brzuzan, Maciej Florczyk, Alicja Łakomiak, Maciej Woźny
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0104867

Transcriptional Response of Musca domestica Larvae to Bacterial Infection
Cited by: 24
Author(s): Ting Tang, Xiang Li, Xue Yang, Xue Yu, Jianghui Wang, Fengsong Liu, Dawei Huang
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0129249

Exploring Differentially Expressed Genes and Natural Antisense Transcripts in Sheep (Ovis aries) Skin with Different Wool Fiber Diameters by Digital Gene Expression Profiling
Cited by: 18
Author(s): Yongna Yuan, Tingting Guo, Jianbin Liu, Jian Guo, Chao Yuan, Ruo Feng, Chune Niu, Xiaoping Sun, Bo‐Yi Yang
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0190096

Comparative transcriptome analysis reveals key genes potentially related to soluble sugar and organic acid accumulation in watermelon
Cited by: 37
Author(s): Lei Gao, Shanjiang Zhao, Xingrong Lu, Nan He, Huiling Zhu, Junling Dou, Wenge Liu
Software Mentions: 1
Published: almost 7 years ago

10.3390/ijms20040855

Transcriptome Analysis of Chinese Chestnut (Castanea mollissima Blume) in Response to Dryocosmus kuriphilus Yasumatsu Infestation
Cited by: 18
Author(s): Cancan Zhu, Fenghou Shi, Yu Chen, Min Wang, Yuqiang Zhao, Guomin Geng
Software Mentions: 1
Published: almost 6 years ago

10.3390/genes10010064

EPA and DHA Inhibit Myogenesis and Downregulate the Expression of Muscle-related Genes in C2C12 Myoblasts
Cited by: 19
Author(s): Jing Zhang, Xin Xu, Yan Liu, Lin Zhang, Jack Odle, Lin X, Huiling Zhu, Xiuying Wang
Software Mentions: 1
Published: almost 6 years ago

10.3390/genes10040316

Transcriptome Dynamics of Double Recessive Mutant, o2o2o16o16, Reveals the Transcriptional Mechanisms in the Increase of Its Lysine and Tryptophan Content in Maize
Cited by: 11
Author(s): Wei Wang, Yi Dai, Mingchun Wang, Wenlong Yang, Degang Zhao
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms20040883

Transcriptome Analyses Provide Novel Insights into Heat Stress Responses in Chieh-Qua (Benincasa hispida Cogn. var. Chieh-Qua How)
Cited by: 17
Author(s): Min Wang, Biao Jiang, Wenrui Liu, Yan Lin, Zhaojun Liang, Xiaoming He, Qingwu Peng
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pntd.0003401

Characterization of the Ca2+-Gated and Voltage-Dependent K+-Channel Slo-1 of Nematodes and Its Interaction with Emodepside
Cited by: 40
Author(s): Daniel Kulke, Georg von Samson‐Himmelstjerna, Sandra M. Miltsch, Adrian J. Wolstenholme, Aaron R. Jex, Robin B. Gasser, Cristina Ballesteros, Timothy G. Geary, Jennifer Keiser, Simon Townson, Achim Harder, Jürgen Krücken
Software Mentions: 1
Published: almost 10 years ago

10.1186/gb-2013-14-2-r20

Transcriptome analyses of primitively eusocial wasps reveal novel insights into the evolution of sociality and the origin of alternative phenotypes
Cited by: 142
Author(s): Pedro G. Ferreira, Solenn Patalano, Ritika Chauhan, Richard H. ffrench-Constant, Toni Gabaldón, Roderic Guigó, Seirian Sumner
Software Mentions: 1
Published: almost 12 years ago

10.1186/s13059-014-0480-5

FunSeq2: a framework for prioritizing noncoding regulatory variants in cancer
Cited by: 286
Author(s): Yao Fu, Zhu Liu, Shaoke Lou, Jason Bedford, Xinmeng Jasmine Mu, Kevin Y. Yip, Ekta Khurana, Mark Gerstein
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pgen.1005817

The Zinc-Finger Protein SOP1 Is Required for a Subset of the Nuclear Exosome Functions in Arabidopsis
Cited by: 34
Author(s): Kian Hématy, Yannick Bellec, Ram Podicheti, Nathalie Bouteiller, Pauline Anne, Céline Morineau, Richard P. Haslam, Frédéric Beaudoin, Johnathan A. Napier, Keithanne Mockaitis, Dominique Gagliardi, Hervé Vaucheret, Heike Lange, Jean-Denis Faure
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pbio.3000872

Nucleotide de novo synthesis increases breast cancer stemness and metastasis via cGMP-PKG-MAPK signaling pathway
Cited by: 53
Author(s): Yajing Lyu, Xiaoshuang Wang, Xiaoyü Li, Guang-wei Xu, Y. Bai, Jiayi Wu, Yongjun Piao, Yi Shi, Rong Xiang, Longlong Wang
Software Mentions: 1
Published: about 4 years ago

10.1111/pbi.13075

The basic helix‐loop‐helix transcription factor, Os<scp>PIL</scp>15, regulates grain size via directly targeting a purine permease gene Os<scp>PUP</scp>7 in rice
Cited by: 38
Author(s): Xin Ji, Yanxiu Du, Fēi Li, Hong Sun, Jing Zhang, Junzhou Li, Ting Peng, Zhouping Xin, Quanzhi Zhao
Software Mentions: 1
Published: almost 6 years ago

10.1111/pbi.13056

<scp>ERF</scp>109 of trifoliate orange (Poncirus trifoliata (L.) Raf.) contributes to cold tolerance by directly regulating expression of Prx1 involved in antioxidative process
Cited by: 68
Author(s): Min Wang, Wen-Shan Dai, Juan Du, Ruhong Ming, Bachar Dahro, Jihong Liu
Software Mentions: 1
Published: almost 6 years ago

10.1111/pbi.13064

Enhanced <scp>ROS</scp> scavenging and sugar accumulation contribute to drought tolerance of naturally occurring autotetraploids in Poncirus trifoliata
Cited by: 88
Author(s): Tong-Lu Wei, Yue Wang, Zongzhou Xie, Dayong Guo, Chuanwu Chen, Qian Fan, Xiaodong Deng, Jihong Liu
Software Mentions: 1
Published: almost 6 years ago

10.3390/ijms20184519

Chemical and Transcriptomic Analysis of Cuticle Lipids under Cold Stress in Thellungiella salsuginea
Cited by: 16
Author(s): Junlin He, Shuai Tang, Di Yang, Yue Chen, Ludi Ling, Yanli Zou, Minqi Zhou, Xingye Xu
Software Mentions: 1
Published: about 5 years ago

10.1093/gbe/evx244

Horizontal Acquisition and Transcriptional Integration of Novel Genes in Mosquito-Associated Spiroplasma
Cited by: 13
Author(s): Wen‐Sui Lo, Chih-Horng Kuo
Software Mentions: 1
Published: about 7 years ago

10.3390/molecules24244455

Beneficial Metabolic Effects of Chitosan and Chitosan Oligosaccharide on Epididymal WAT Browning and Thermogenesis in Obese Rats
Cited by: 18
Author(s): Jin Wang, Wanping He, Di Yang, Hua Cao, Yan Bai, Jiao Guo, Zhixing Su
Software Mentions: 1
Published: almost 5 years ago

10.5808/gi.20051

De novo assembly, annotation and gene expression profiles of gonads of Cytorace-3, a hybrid lineage of Drosophila nasuta nasuta and D. n. albomicans
Cited by: 1
Author(s): Koushik Ponnanna, Stafny DSouza, Nallur B. Ramachandra
Software Mentions: 1
Published: over 3 years ago

10.18632/oncotarget.14554

Establishment of a normal-derived estrogen receptor-positive cell line comparable to the prevailing human breast cancer subtype
Cited by: 13
Author(s): Branden M. Hopkinson, Marie Christine Klitgaard, Ole W. Petersen, René Villadsen, Lone Rønnov‐Jessen, Jiyoung Kim
Software Mentions: 1
Published: almost 8 years ago

10.3390/ijms21144955

Black Soldier Fly Larvae Adapt to Different Food Substrates through Morphological and Functional Responses of the Midgut
Cited by: 42
Author(s): M. Bonelli, Daniele Bruno, Matteo Brilli, N. Gianfranceschi, Ling Tian, Gianluca Tettamanti, Silvia Caccia, Morena Casartelli
Software Mentions: 1
Published: over 4 years ago

10.1186/s40104-018-0297-2

Effect of diets supplemented with linseed alone or combined with vitamin E and selenium or with plant extracts, on Longissimus thoracis transcriptome in growing-finishing Italian Large White pigs
Cited by: 11
Author(s): Rubina Sirri, Marika Vitali, Paolo Zambonelli, Giulia Giannini, Martina Zappaterra, Domenico Pietro Lo Fiego, Dalal Sami, Roberta Davoli
Software Mentions: 1
Published: about 6 years ago

10.7150/jca.37762

Cadherin 13 Inhibits Pancreatic Cancer Progression and Epithelial-mesenchymal Transition by Wnt/β-Catenin Signaling
Cited by: 16
Author(s): Dengfei Xu, Hui Yuan, Zihong Meng, Chunmei Yang, Zefang Li, Mengge Li, Zhigang Zhang, Guangrong Yu, Hong Tu
Software Mentions: 1
Published: almost 5 years ago

10.7150/jca.56262

RNA-binding protein YBX1 promotes cell proliferation and invasiveness of nasopharyngeal carcinoma cells via binding to AURKA mRNA
Cited by: 9
Author(s): Yuanyuan Ban, Yixin Tan, Xiaoling Li, Xiayu Li, Zhaoyang Zeng, Xiong Wang, Guiyuan Li, Bo Xiang, Yi Man
Software Mentions: 1
Published: almost 4 years ago

10.1186/s12864-016-2857-1

Comparative transcriptome analysis of basal and zygote-located tip regions of peanut ovaries provides insight into the mechanism of light regulation in peanut embryo and pod development
Cited by: 25
Author(s): Ye Zhang, Pengfei Wang, Han Xia, Chuanzhi Zhao, Lei Hou, Changsheng Li, Chao Gao, Xingjun Wang, Shuzhen Zhao
Software Mentions: 1
Published: over 8 years ago

10.1111/jcmm.16874

Imipramine impedes glioma progression by inhibiting YAP as a Hippo pathway independent manner and synergizes with temozolomide
Cited by: 12
Author(s): Yan Wang, Xiang Wang, Xu Wang, Di Wu, Ji Qi, Yu Zhang, Kai Wang, Ding Zhou, Qingming Meng, Er Nie, Qiang Wang, Rutong Yu, Xiuping Zhou
Software Mentions: 1
Published: about 3 years ago

10.1002/mbo3.624

Identification of genes related to chlamydospore formation in Clonostachys rosea 67‐1
Cited by: 8
Author(s): Zhan‐Bin Sun, Jun Zhang, Man-Hong Sun, Shidong Li
Software Mentions: 1
Published: over 6 years ago

10.1093/jxb/erw146

Fibre elongation requires normal redox homeostasis modulated by cytosolic ascorbate peroxidase in cotton (Gossypium hirsutum)
Cited by: 47
Author(s): Kai Guo, Xueqiong Du, Lili Tu, Wenxin Tang, Pengcheng Wang, Maojun Wang, Zhen Liu, Xianlong Zhang
Software Mentions: 1
Published: over 8 years ago

10.1093/jxb/ery344

Ethylene-independent promotion of photomorphogenesis in the dark by cytokinin requires COP1 and the CDD complex
Cited by: 15
Author(s): Anne Cortleven, Stephanie Ehret, Thomas Schmülling, Henrik Johansson
Software Mentions: 1
Published: about 6 years ago

10.1093/jxb/eraa208

PaACL silencing accelerates flower senescence and changes the proteome to maintain metabolic homeostasis in Petunia hybrida
Cited by: 10
Author(s): Huina Zhao, Shiwei Zhong, Lina Sang, Xinyou Zhang, Zeyu Chen, Qian Wei’s, Guoju Chen, Juanxu Liu, Yingnian Yu
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.ppat.1003883

The Arabidopsis miR472-RDR6 Silencing Pathway Modulates PAMP- and Effector-Triggered Immunity through the Post-transcriptional Control of Disease Resistance Genes
Cited by: 193
Author(s): Martine Boccara, Alexis Sarazin, Odon Thiébeauld, Florence Jay, Olivier Voinnet, Lionel Navarro, Vincent Colot
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.ppat.1006457

Potassium is a key signal in host-microbiome dysbiosis in periodontitis
Cited by: 38
Author(s): Susan Yost, Ana E. Duran-Pinedo, K. V. Krishnan, Jorge Frias-Lopez
Software Mentions: 1
Published: over 7 years ago

10.1002/mbo3.562

Identification of differentially expressed genes involved in spore germination ofPenicillium expansumby comparative transcriptome and proteome approaches
Cited by: 27
Author(s): Ting Zhou, Xiaohong Wang, Jin Luo, Bishun Ye, Yingying Zhou, Liwan Zhou, Tongfei Lai
Software Mentions: 1
Published: almost 7 years ago

10.3390/ijms21249439

Trypanosoma cruzi Modulates PIWI-Interacting RNA Expression in Primary Human Cardiac Myocytes during the Early Phase of Infection
Cited by: 8
Author(s): Kayla J. Rayford, Ayorinde Cooley, Ashutosh Arun, Girish Rachakonda, Yulia Kleschenko, Fernando Villalta, Siddharth Pratap, Maria F. Lima, Pius N. Nde
Software Mentions: 1
Published: almost 4 years ago

10.1186/s12935-021-01858-3

Absence of EpCAM in cervical cancer cells is involved in slug induced epithelial-mesenchymal transition
Cited by: 5
Author(s): Xian Liu, Qian Feng, Yanru Zhang, Pan Zheng, Nan Cui
Software Mentions: 1
Published: over 3 years ago

10.1038/sdata.2018.247

Transcriptome profiling in the spathe of Anthurium andraeanum ‘Albama’ and its anthocyanin-loss mutant ‘Xueyu’
Cited by: 1
Author(s): Zhiying Li, Jiabin Wang, Yuhua Fu, Yu Gao, Hunzhen Lu, Li Xu
Software Mentions: 1
Published: about 6 years ago

10.1038/s41597-020-0412-z

A multi-omics dataset of heat-shock response in the yeast RNA binding protein Mip6
Cited by: 5
Author(s): Carme Nuño‐Cabanes, Manuel Ugidos, Sonia Tarazona, Manuel Martín-Expósito, Alberto Ferrer, Susana Rodrı́guez-Navarro, Ana Conesa
Software Mentions: 1
Published: over 4 years ago

10.20892/j.issn.2095-3941.2019.0335

Time serial transcriptome reveals Cyp2c29 as a key gene in hepatocellular carcinoma development
Cited by: 14
Author(s): Qi Wang, Qin Tang, Lijun Zhao, Qiong Zhang, Yuxin Wu, Hui Hu, Lanlan Liu, Xiang Liu, Yanhong Zhu, An‐Yuan Guo, Xiangliang Yang
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41416-019-0680-6

Therapeutically targeting head and neck squamous cell carcinoma through synergistic inhibition of LSD1 and JMJD3 by TCP and GSK-J1
Cited by: 21
Author(s): Wei Zhang, Jie Cheng, Pengfei Diao, Dongmiao Wang, Hongbing Jiang, Yanling Wang
Software Mentions: 1
Published: almost 5 years ago

10.1038/srep26579

Identification of Changes in Gene expression of rats after Sensory and Motor Nerves Injury
Cited by: 6
Author(s): Yu Wang, Zhixin Guo, Xiaojuan Sun, Shibi Lu, Wenjing Xu, Qing Zhao, Jiang Peng
Software Mentions: 1
Published: over 8 years ago

10.1186/s12864-020-07005-y

Integrated metabolomics and transcriptomics study of traditional herb Astragalus membranaceus Bge. var. mongolicus (Bge.) Hsiao reveals global metabolic profile and novel phytochemical ingredients
Cited by: 11
Author(s): Xueting Wu, Xuetong Li, Wei Wang, Yuanhong Shan, Cuiting Wang, Min Zhu, La Qiong, Yang Zhong, Ye Xu, Nan Peng, Xuan Li
Software Mentions: 1
Published: about 4 years ago

10.1186/s13068-019-1445-4

Differential transcriptomic profiling of filamentous fungus during solid-state and submerged fermentation and identification of an essential regulatory gene PoxMBF1 that directly regulated cellulase and xylanase gene expression
Cited by: 24
Author(s): Shuai Zhao, Qi Liu, Jiu-Xiang Wang, Xu-Zhong Liao, Hao Guo, Chengxi Li, Feng-Fei Zhang, Lusheng Liao, Xi Luo, Jia‐Xun Feng
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-017-01314-1

RNA-Seq based genome-wide analysis reveals loss of inter-chromosomal regulation in breast cancer
Cited by: 44
Author(s): Jesús Espinal-Enríquez, Cristóbal Fresno, Guillermo de Anda-Jáuregui, Enrique Hernández‐Lemus
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-017-02106-3

Phenotypic plasticity, trade-offs and gene expression changes accompanying dietary restriction and switches in Bactrocera dorsalis (Hendel) (Diptera: Tephritidae)
Cited by: 13
Author(s): Er-Hu Chen, Qiu‐Li Hou, Dandan Wei, Hong‐Bo Jiang, Jinjun Wang
Software Mentions: 1
Published: over 7 years ago

10.3390/ijms22052507

New Insight into Justicidin B Pathway and Production in Linum austriacum
Cited by: 7
Author(s): Iride Mascheretti, Michela Alfieri, Massimiliano Lauria, Franca Locatelli, Roberto Consonni, Erica Cusano, Roméo Arago Dougué Kentsop, Marina Laura, Gianluca Ottolina, Franco Faoro, Monica Mattana
Software Mentions: 1
Published: over 3 years ago

10.1186/s13068-016-0616-9

Comparative genomic, transcriptomic and secretomic profiling of Penicillium oxalicum HP7-1 and its cellulase and xylanase hyper-producing mutant EU2106, and identification of two novel regulatory genes of cellulase and xylanase gene expression
Cited by: 54
Author(s): Shuai Zhao, Yu-Si Yan, Qi-Peng He, Lin Yang, Xin Yin, Chengxi Li, Li-Chun Mao, Lusheng Liao, Jinqun Huang, Shangbo Xie, Qingdong Nong, Zheng Zhang, Jing Lei, Ya-Ru Xiong, Chengjie Duan, Junliang Liu, Jia‐Xun Feng
Software Mentions: 1
Published: about 8 years ago

10.1186/s13068-017-0966-y

Transcriptomic profiling and genetic analyses reveal novel key regulators of cellulase and xylanase gene expression in Penicillium oxalicum
Cited by: 35
Author(s): Yu-Si Yan, Shuai Zhao, Lusheng Liao, Qi-Peng He, Ya-Ru Xiong, Long Wang, Chengxi Li, Jia‐Xun Feng
Software Mentions: 1
Published: about 7 years ago

10.3390/biom10010117

Sorafenib Inhibits Ribonucleotide Reductase Regulatory Subunit M2 (RRM2) in Hepatocellular Carcinoma Cells
Cited by: 38
Author(s): Pei Ming Yang, Lin Li, Tsang Pai Liu
Software Mentions: 1
Published: almost 5 years ago

10.1155/2021/5612138

Interferon-Induced Transmembrane Protein 3 Expression Upregulation Is Involved in Progression of Hepatocellular Carcinoma
Cited by: 5
Author(s): Yuli Hou, Shanshan Wang, Mengdan Gao, Jing Chang, Jianping Sun, Ling Qin, Ang Li, Fang Lv, Jinli Lou, Yonghong Zhang, Yan Zhao
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-018-27062-4

Comparative transcriptome analysis of Sogatella furcifera (Horváth) exposed to different insecticides
Cited by: 46
Author(s): Cao Zhou, Hong Yang, Zhao Wang, Gui‐Yun Long, Dao‐Chao Jin
Software Mentions: 1
Published: over 6 years ago

10.18632/aging.101411

A net-shaped multicellular formation facilitates the maturation of hPSC-derived cardiomyocytes through mechanical and electrophysiological stimuli
Cited by: 5
Author(s): Taoyan Liu, Chengwu Huang, Hongxia Li, Fujian Wu, Jianwen Luo, Wenjing Lü, Feng Lan
Software Mentions: 1
Published: over 6 years ago

10.1186/s12870-020-02394-4

Changes in carbohydrate metabolism and endogenous hormone regulation during bulblet initiation and development in Lycoris radiata
Cited by: 18
Author(s): Junxu Xu, Qingzhu Li, Liuyan Yang, Xin Li, Wang Zhen, Yongchun Zhang
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-019-41348-1

The genes expression difference between winged and wingless bird cherry-oat aphid Rhopalosiphum padi based on transcriptomic data
Cited by: 9
Author(s): Rong-Jiao Zhang, Jing Chen, Li‐Yun Jiang, Ge‐Xia Qiao
Software Mentions: 1
Published: over 5 years ago

10.1186/s12870-021-02955-1

A SNP of HD-ZIP I transcription factor leads to distortion of trichome morphology in cucumber (Cucumis sativus L.)
Cited by: 9
Author(s): Leyu Zhang, Duo Lv, Jian Pan, Keyan Zhang, Haifan Wen, Yue Chen, Hui Du, Hailong He, Run Cai, Junsong Pan, Gang Wang
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-019-47476-y

Steroids originating from bacterial bile acid degradation affect Caenorhabditis elegans and indicate potential risks for the fauna of manured soils
Cited by: 16
Author(s): Martha N. Mendelski, Ramona Dölling, Franziska Maria Feller, Dennis Hoffmann, L. Ramos Fangmeier, Kevin C. Ludwig, Onur Yücel, Almuth Mährlein, Rüdiger J. Paul, Bodo Philipp
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-48478-6

The Zea mays mutants opaque2 and opaque16 disclose lysine change in waxy maize as revealed by RNA-Seq
Cited by: 6
Author(s): Wei Wang, Suzhen Niu, Yi Dai, Mingchun Wang, Yan Li, Wenlong Yang, Degang Zhao
Software Mentions: 1
Published: over 5 years ago

10.1186/s12870-019-1630-4

Full-length transcript sequencing and comparative transcriptomic analysis to evaluate the contribution of osmotic and ionic stress components towards salinity tolerance in the roots of cultivated alfalfa (Medicago sativa L.)
Cited by: 69
Author(s): Dong Luo, Qiang Zhou, Yuguo Wu, Xutian Chai, Wenxian Liu, Yanrong Wang, Qingchuan Yang, Zengyu Wang, Wenxian Liu
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-019-50903-9

A CD146 FACS Protocol Enriches for Luminal Keratin 14/19 Double Positive Human Breast Progenitors
Cited by: 5
Author(s): Ólöf Gerdur Ísberg, Jiyoung Kim, Agla J. Fridriksdottir, Mikkel Morsing, Vera Timmermans-Wielenga, Lone Rønnov‐Jessen, Ole W. Petersen, René Villadsen
Software Mentions: 1
Published: about 5 years ago

10.1186/s12866-018-1375-5

Transcriptomic and proteomic analyses reveal new insights into the regulation of immune pathways during adenovirus type 2 infection
Cited by: 9
Author(s): Hongxing Zhao, Maoshan Chen, Alberto Valdés, Sara Bergström Lind, Ulf Pettersson
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12885-018-4446-y

Neuropilin-1 promotes the oncogenic Tenascin-C/integrin β3 pathway and modulates chemoresistance in breast cancer cells
Cited by: 39
Author(s): Aleš Belič, Aida Al-Yahyaee, Nada Abdullah, Juda El Sam, Noura Al‐Zeheimi, Mahmoud W. Yaish, Sirin A. Adham
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms22115848

PERK/ATF4-Dependent ZFAS1 Upregulation Is Associated with Sorafenib Resistance in Hepatocellular Carcinoma Cells
Cited by: 18
Author(s): Jung Fu Lin, Pei Ming Yang, Tsang-Pai Liu
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-020-64273-0

MicroRNA Profiling of Highly Enriched Human Corneal Epithelial Stem Cells by Small RNA Sequencing
Cited by: 9
Author(s): Lavanya Kalaimani, Bharanidharan Devarajan, S. Umadevi, Ayyasamy Vanniarajan, Venkatesh Prajna Namperumalsamy, Veerappan Muthukkaruppan, Gowri Priya Chidambaranathan
Software Mentions: 1
Published: over 4 years ago

10.1186/s12864-019-5499-2

Methylome and transcriptome analyses of apple fruit somatic mutations reveal the difference of red phenotype
Cited by: 39
Author(s): Shenghui Jiang, Qingguo Sun, Min Chen, Nan Wang, Haifeng Xu, Hongcheng Fang, Yicheng Wang, Zongying Zhang
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12864-019-5714-1

Comparative transcriptome analysis of trout skin pigment cells
Cited by: 25
Author(s): Ida Djurdjevič, Tomasz Furmanek, Seita Miyazawa, Simona Sušnik Bajec
Software Mentions: 1
Published: over 5 years ago

10.1186/s12864-020-07098-5

Gene expression profiling reveals the effects of light on adventitious root formation in lotus seedlings (Nelumbo nucifera Gaertn.)
Cited by: 1
Author(s): Long Cheng, Yuan Han, Zhao Minrong, Xiaogang Xu, Shen Zhiguang, Chunfei Wang, Shuyan Li, Zhubing Hu
Software Mentions: 1
Published: about 4 years ago

10.1186/s12864-015-1817-5

RNA-Seq in Mytilus galloprovincialis: comparative transcriptomics and expression profiles among different tissues
Cited by: 81
Author(s): Rebeca Moreira, Patricia Pereiro, Carlos Canchaya, David Posada, António Figueras, Beatriz Novoa
Software Mentions: 1
Published: about 9 years ago

10.1186/s12864-017-4039-1

The impact of RNA sequence library construction protocols on transcriptomic profiling of leukemia
Cited by: 41
Author(s): Ashwini Kumar, Matti Kankainen, Alun Parsons, Olli Kallioniemi, Pirkko Mattila, Caroline A. Heckman
Software Mentions: 1
Published: over 7 years ago

10.1186/s12864-019-5949-x

Transcriptome analysis of virulence-differentiated Fusarium oxysporum f. sp. cucumerinum isolates during cucumber colonisation reveals pathogenicity profiles
Cited by: 11
Author(s): Xiaoqing Huang, Xiaohong Lü, Man-Hong Sun, Rong-Jun Guo, Anne D. van Diepeningen, Shidong Li
Software Mentions: 1
Published: over 5 years ago

10.1186/s12864-018-4960-y

Omics for understanding the tolerant mechanism of Trichoderma asperellum TJ01 to organophosphorus pesticide dichlorvos
Cited by: 17
Author(s): Qiong Wu, Mingkang Ni, Guisheng Wang, Qianqian Liu, Meixia Yu, Jun Tang
Software Mentions: 1
Published: over 6 years ago

10.1186/s12862-017-1045-5

Phenotypes, antioxidant responses, and gene expression changes accompanying a sugar-only diet in Bactrocera dorsalis (Hendel) (Diptera: Tephritidae)
Cited by: 13
Author(s): Er-Hu Chen, Qiu‐Li Hou, Dandan Wei, Hong‐Bo Jiang, Jinjun Wang
Software Mentions: 1
Published: over 7 years ago

10.1186/2193-1801-1-44

Transdifferentiation of MALME-3M and MCF-7 Cells toward Adipocyte-like Cells is Dependent on Clathrin-mediated Endocytosis
Cited by: 4
Author(s): Jaime Cárcel‐Trullols, Cristóbal Aguilar-Gallardo, Fernando García-Alcalde, Miguel A. Pardo‐Cea, Joaquı́n Dopazo, Ana Conesa, Carlos Simón
Software Mentions: 1
Published: about 12 years ago

10.1016/j.stemcr.2021.05.016

Auxin-degron system identifies immediate mechanisms of OCT4
Cited by: 11
Author(s): Lawrence E. Bates, Mariana R. P. Alves, Jose Rebelo Da Silva
Software Mentions: 1
Published: over 3 years ago

10.1186/s13287-020-01774-9

Knockdown of LAP2α inhibits osteogenic differentiation of human adipose-derived stem cells by activating NF-κB
Cited by: 6
Author(s): Yuxing Tang, Xiao Zhang, Wenshu Ge, Yongsheng Zhou
Software Mentions: 1
Published: over 4 years ago

10.1186/s13287-020-01856-8

Biological characteristics of endometriotic mesenchymal stem cells isolated from ectopic lesions of patients with endometriosis
Cited by: 19
Author(s): Yanli Li, Shengying Liang, Fen Yang, Yuliang Sun, Lidan Niu, Yuanyuan Ren, Hongmei Wang, Yanan He, Jinyan Du, Jing Yang
Software Mentions: 1
Published: over 4 years ago

10.1155/2019/1705629

Bioinformatic Analysis of Transcriptomic Data Reveals Novel Key Genes Regulating Osteogenic Differentiation of Human Adipose Stem Cells
Cited by: 2
Author(s): Jinquan Cheng, Xinyuan Zhao, Juan Liu, Li Cui, Yanfeng Zhu, Xiaoqing Yuan, Jianbo Gao, Yunfeng Du, Xinmin Yan, Shen Hu
Software Mentions: 1
Published: over 5 years ago

10.1155/2019/4686132

PTPN21 Overexpression Promotes Osteogenic and Adipogenic Differentiation of Bone Marrow-Derived Mesenchymal Stem Cells but Inhibits the Immunosuppressive Function
Cited by: 6
Author(s): Huafang Wang, Xiaohang Ye, Haowen Xiao, Ni Zhu, Cong Wang, Xiang Sun, Limengmeng Wang, Binsheng Wang, Xin Yu, Xiaoyu Lai, Shan Fu, He Huang
Software Mentions: 1
Published: about 5 years ago

10.1186/s12864-016-2625-2

Temperature expression patterns of genes and their coexpression with LncRNAs revealed by RNA-Seq in non-heading Chinese cabbage
Cited by: 73
Author(s): Xiaoming Song, Gaofeng Liu, Zhinan Huang, Weike Duan, Huawei Tan, Ying Li, Xilin Hou
Software Mentions: 1
Published: over 8 years ago

10.1038/s41398-020-01068-x

Alternative splicing landscape of the neural transcriptome in a cytoplasmic-predominant Pten expression murine model of autism-like Behavior
Cited by: 14
Author(s): Stetson Thacker, Marilyn Sefyi, Charis Eng
Software Mentions: 1
Published: about 4 years ago

10.1093/treephys/tpaa151

Identification of early and late flowering time candidate genes in endodormant and ecodormant almond flower buds
Cited by: 25
Author(s): Ángela S. Prudencio, Frank A. Hoeberichts, F. Dicenta, Pedro Martínez‐Gómez, Raquel Sánchez‐Pérez
Software Mentions: 1
Published: about 4 years ago

10.1186/s13046-017-0635-9

Direct inhibition of ACTN4 by ellagic acid limits breast cancer metastasis via regulation of β-catenin stabilization in cancer stem cells
Cited by: 51
Author(s): Neng Wang, Qi Wang, Hailin Tang, Fengxue Zhang, Yifeng Zheng, Shengqi Wang, Jin Zhang, Zhiyu Wang
Software Mentions: 1
Published: almost 7 years ago

10.18632/aging.103831

MiR-520d-5p modulates chondrogenesis and chondrocyte metabolism through targeting HDAC1
Cited by: 7
Author(s): Jiajia Lu, Zhengming Zhou, Bin Sun, Bin Han, Qiang Fu, Yaguang Han, Yuan Wang, Zeng Xu, Aimin Chen
Software Mentions: 1
Published: about 4 years ago

10.1186/s13046-021-01878-x

Cancer-associated fibroblasts promote the survival of irradiated nasopharyngeal carcinoma cells via the NF-κB pathway
Cited by: 29
Author(s): Weiqiang Huang, Longshan Zhang, Mi Yang, Xixi Wu, Xiaoqing Wang, Wenqi Huang, Yuan Lu, Hua Pan, Yin Wang, Zi-Ci Wang, Yuting Wu, Jihong Huang, Huazhen Liang, Shaoqun Li, Lili Liao, Laiyu Liu, Jian Guan
Software Mentions: 1
Published: over 3 years ago

10.1186/s13046-021-01995-7

Natural product triptolide induces GSDME-mediated pyroptosis in head and neck cancer through suppressing mitochondrial hexokinase-ΙΙ
Cited by: 75
Author(s): Jing Cai, Yi Man, Yixin Tan, Xiaoling Li, Guiyuan Li, Zhaoyang Zeng, Bo Xiang
Software Mentions: 1
Published: over 3 years ago

10.18632/oncotarget.9202

Unveiling MYCN regulatory networks in neuroblastoma via integrative analysis of heterogeneous genomics data
Cited by: 31
Author(s): Chia‐Lang Hsu, Han-Yu Chang, Jan‐Gowth Chang, Wen Ming Hsu, Hsuan‐Cheng Huang, Hsueh Fen Juan
Software Mentions: 1
Published: over 8 years ago

10.1155/2019/6905194

RNA-Seq-Based Gene Expression Pattern and Morphological Alterations in Chick Thymus during Postnatal Development
Cited by: 3
Author(s): Zhouyiyuan Xue, Abdur Rahman Ansari, Xing Zhao, Kun Zang, Liang Yu, Lei Cui, Hu Y, Ranran Cheng, Xiaolong Zhang, Juming Zhong, Huazhen Liu
Software Mentions: 1
Published: over 5 years ago

10.1186/s12864-015-1362-2

Transcriptome differences between Cry1Ab resistant and susceptible strains of Asian corn borer
Cited by: 38
Author(s): Lei Xu, Yueqin Wang, Zhenying Wang, B. Hu, Yinghui Ling, Kanglai He
Software Mentions: 1
Published: over 9 years ago

10.1167/iovs.18-26018

Transformation of the Transcriptomic Profile of Mouse Periocular Mesenchyme During Formation of the Embryonic Cornea
Cited by: 16
Author(s): Justin Ma, Peter Y. Lwigale
Software Mentions: 1
Published: almost 6 years ago

10.1038/s42003-020-01224-5

A flavin-dependent monooxygenase catalyzes the initial step in cyanogenic glycoside synthesis in ferns
Cited by: 17
Author(s): Sara Thodberg, Mette Sørensen, Matteo Bellucci, Christoph Crocoll, Amalie Kofoed Bendtsen, David R. Nelson, Mohammed Saddik Motawia, Birger Lindberg Møller, Elizabeth Heather Jakobsen Neilson
Software Mentions: 1
Published: about 4 years ago

10.1093/dnares/dst022

Analysis of Stress-Responsive Transcriptome in the Intestine of Asian Seabass (Lates calcarifer) using RNA-Seq
Cited by: 82
Author(s): Jun Xia, Peng Liu, Feng Liu, Grace Lin, Fei Sun, Rongjian Tu, Gen Hua Yue
Software Mentions: 1
Published: over 11 years ago

10.1242/dev.123547

Defining the three cell lineages of the human blastocyst by single-cell RNA-seq
Cited by: 335
Author(s): Paul Blakeley, Norah M. E. Fogarty, Ignacio del Valle, Sissy E. Wamaitha, Xiaoming Hu, Kay Elder, Philip Snell, Leila Christie, Paul Robson, Kathy K. Niakan
Software Mentions: 1
Published: almost 10 years ago

10.3390/cells9061431

Host Gene Expression of Macrophages in Response to Feline Coronavirus Infection
Cited by: 4
Author(s): Yvonne Drechsler, Elton J. R. Vasconcelos, Lisa Griggs, Pedro P P V Diniz, Ellen W. Collisson
Software Mentions: 1
Published: over 4 years ago

10.1242/dmm.024109

A mutation disrupting TET1 activity alters the expression of genes critical for neural tube closure in the tuft mouse
Cited by: 12
Author(s): Keith S. K. Fong, Robert B. Hufnagel, Vedbar S. Khadka, Michael J. Corley, Alika K. Maunakea, Ben Fogelgren, Zubair M. Ahmed, Scott Lozanoff
Software Mentions: 1
Published: almost 9 years ago

10.15252/emmm.201810233

Genetically engineered distal airway stem cell transplantation protects mice from pulmonary infection
Cited by: 15
Author(s): Yueqing Zhou, Yun Shi, Ling Yang, Yufen Sun, Yufei Han, Zhongyang Zhao, Yu‐jia Wang, Ying Liu, Yu Ma, Ting Zhang, Tao Ren, Tina P. Dale, Nicholas R. Forsyth, Fang Jin, Qu Jian, Wei Zuo, Jin‐Fu Xu
Software Mentions: 1
Published: almost 5 years ago

10.12688/f1000research.19140.1

Iron Hack - A symposium/hackathon focused on porphyrias, Friedreich’s ataxia, and other rare iron-related diseases
Cited by: 9
Author(s): Glória C. Ferreira, Jenna Oberstaller, Renée Fonseca, Thomas E. Keller, Swamy Rakesh Adapa, Justin Gibbons, Chengqi Wang, Xiaoming Liu, Li Chang, Minh Pham, Guy W. Dayhoff, Linh M. Duong, Luis Tañón Reyes, Luciano Enrique Laratelli, Douglas M. Franz, Segun Fatumo, Atm Golam Bari, Audrey Freischel, Lindsey Fiedler, Omkar Dokur, Krishna Deo Sharma, Deborah Cragun, Ben Busby, Rays H. Y. Jiang
Software Mentions: 1
Published: over 5 years ago

10.1038/s41420-020-00340-9

Cardiomyocyte-restricted high-mobility group box 1 (HMGB1) deletion leads to small heart and glycolipid metabolic disorder through GR/PGC-1α signalling
Cited by: 6
Author(s): Peng Yu, Ming Liu, Baoli Zhang, Ying Yu, Enyong Su, Shiyao Xie, Lei Zhang, Xue Yang, Hong Jiang, Ruizhen Chen, Yunzeng Zou, Junbo Ge
Software Mentions: 1
Published: about 4 years ago

10.1186/s12864-015-1894-5

Comprehensive transcriptome analysis of Crocus sativus for discovery and expression of genes involved in apocarotenoid biosynthesis
Cited by: 70
Author(s): Shoib Ahmad Baba, Tabasum Mohiuddin, Swaraj Basu, Mohit Kumar Swarnkar, Aubid Hussain Malik, Zahoor A. Wani, Nazia Abbas, Anil Kumar Singh, Nasheeman Ashraf
Software Mentions: 1
Published: about 9 years ago

10.1186/s12864-016-3222-0

De novo transcriptome sequencing and gene expression profiling of Elymus nutans under cold stress
Cited by: 43
Author(s): Juanjuan Fu, Yanjun Miao, Linhui Shao, Tianming Hu, Peizhi Yang
Software Mentions: 1
Published: about 8 years ago

10.3389/fcell.2021.657623

1800 MHz Radiofrequency Electromagnetic Field Impairs Neurite Outgrowth Through Inhibiting EPHA5 Signaling
Cited by: 2
Author(s): Chunhai Chen, Qinglong Ma, Ping Deng, Min Lin, Peng Gao, Mindi He, Yonghui Lu, Huifeng Pi, Zhaoren He, Chao Zhou, Yanwen Zhang, Zhengping Yu, Lei Zhang
Software Mentions: 1
Published: over 3 years ago

Projects: bioconductor: NOISeq

Papers Mentioning NOISeq 321