Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: bioconductor: MetNet

https://packages.ecosyste.ms/registries/bioconductor.org/packages/MetNet

Inferring metabolic networks from untargeted high-resolution mass spectrometry data
1 version
Latest release: about 1 year ago
5,801 downloads total

Papers Mentioning MetNet 15

10.3390/metabo9100200

The metaRbolomics Toolbox in Bioconductor and beyond
Cited by: 61
Author(s): Jan Stanstrup, Corey D. Broeckling, Rick Helmus, Nils Hoffmann, Ewy A. Mathé, Thomas Naake, Luca Nicolotti, Kristian Peters, Johannes Michael Rainer, Reza M. Salek, Tobias Schulze, Emma L. Schymanski, Michael A. Stravs, Etienne Thévenot, Hendrik Treutler, Ralf Weber, Egon Willighagen, Michael Witting, Steffen Neumann
Software Mentions: 92
Published: over 5 years ago

10.1186/1471-2229-8-99

Regulon organization of Arabidopsis
Cited by: 95
Author(s): Wieslawa I. Mentzen, Eve Syrkin Wurtele
Software Mentions: 5
Published: almost 17 years ago

10.1186/1756-0500-3-312

MetNetAPI: A flexible method to access and manipulate biological network data from MetNet
Cited by: 4
Author(s): Yves Sucaet, Eve Syrkin Wurtele
Software Mentions: 4
Published: about 14 years ago

10.1155/2008/893941

Bioinformatic Tools for Inferring Functional Information from Plant Microarray Data II: Analysis Beyond Single Gene
Cited by: 11
Author(s): Issa Coulibaly, Grier P. Page
Software Mentions: 3
Published: over 16 years ago

10.1186/1471-2105-10-346

Arabidopsis gene co-expression network and its functional modules
Cited by: 167
Author(s): Linyong Mao, John L. Van Hemert, Sudhansu Dash, Julie A. Dickerson
Software Mentions: 2
Published: about 15 years ago

10.1186/1471-2105-7-109

VANTED: A system for advanced data analysis and visualization in the context of biological networks
Cited by: 431
Author(s): Björn H. Junker, Christian Klukas, Falk Schreiber
Software Mentions: 2
Published: almost 19 years ago

10.1371/journal.pone.0246962

MetNet: A two-level approach to reconstructing and comparing metabolic networks
Cited by: 2
Author(s): Nicoletta Cocco, Mercè Llabrés, Mariana Reyes-Prieto, Marta Simeoni
Software Mentions: 1
Published: almost 4 years ago

10.1002/cfg.285

MetNet: Software to Build and Model the Biogenetic Lattice of<i>Arabidopsis</i>
Cited by: 56
Author(s): Eve Syrkin Wurtele, Jie Li, Lixia Diao, Hailong Zhang, Carol M. Foster, Beth LeAnn Fatland, Julie A. Dickerson, Andrew W. Brown, Zach Cox, Dianne Cook, Eun Kyung Lee, Heike Hofmann
Software Mentions: 1
Published: almost 22 years ago

10.3389/fpls.2016.00983

A Clade-Specific Arabidopsis Gene Connects Primary Metabolism and Senescence
Cited by: 11
Author(s): Dennis Jones, Weihui Zheng, Sheng Huang, Chuanlong Du, Xuefeng Zhao, Ragothaman M. Yennamalli, Taner Z. Sen, Dan Nettleton, Eve Syrkin Wurtele, Ling Li
Software Mentions: 1
Published: over 8 years ago

10.1186/1471-2164-16-S3-S9

A systems biology approach toward understanding seed composition in soybean
Cited by: 37
Author(s): Ling Li, Manhoi Hur, Joon‐Yong Lee, Wenxu Zhou, Zhihong Song, Nick Ransom, Cumhur Yusuf Demirkale, Dan Nettleton, Mark E. Westgate, Zebulun Arendsee, Vidya Iyer, Jacqueline V. Shanks, Basil J. Nikolau, Eve Syrkin Wurtele
Software Mentions: 1
Published: almost 10 years ago