Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: bioconductor: MSstats
https://packages.ecosyste.ms/registries/bioconductor.org/packages/MSstats
Protein Significance Analysis in DDA, SRM and DIA for Label-free or Label-based Proteomics Experiments
1 version
Latest release: 11 months ago
7 dependent packages
58,005 downloads total
Papers Mentioning MSstats 115
10.3390/cancers13153804
Comprehensive Library Generation for Identification and Quantification of Endometrial Cancer Protein Biomarkers in Cervico-Vaginal FluidCited by: 8
Author(s): Kelechi Njoku, Davide Chiasserini, Bethany Geary, Andrew Pierce, Eldon M. Jones, Anthony D. Whetton, Emma J. Crosbie
Software Mentions: 1
Published: about 3 years ago
10.1038/s41419-021-03651-6
Genetic inactivation of RIP1 kinase activity in rats protects against ischemic brain injuryCited by: 6
Author(s): Kimberly L. Stark, Tatiana Goncharov, Eugene Varfolomeev, Luke Xie, Hai Ngu, Ivan Peng, Keith R. Anderson, Erik Verschueren, Meena Choi, Donald S. Kirkpatrick, Amy Easton, Joshua D. Webster, Brent McKenzie, Domagoj Vucic, Baris Bingol
Software Mentions: 1
Published: over 3 years ago
10.1186/s13068-018-1052-9
H2 drives metabolic rearrangements in gas-fermenting Clostridium autoethanogenumCited by: 92
Author(s): Kaspar Valgepea, Renato de Souza Pinto Lemgruber, Tanus Abdalla, Steve Binos, Nobuaki Takemori, Ayako Takemori, Yuki Tanaka, Ryan C. Tappel, Michael Köpke, Séan D. Simpson, Lars K. Nielsen, Esteban Marcellin
Software Mentions: 1
Published: over 6 years ago
10.1186/s12014-020-09299-2
Application of SWATH mass spectrometry in the identification of circulating proteins does not predict future weight gain in early psychosisCited by: 3
Author(s): Adrian Heald, Narges Azadbakht, Bethany Geary, Silke Conen, Helene Fachim, Dave Chi Hoo Lee, Nophar Geifman, Sanam Farman, Oliver Howes, Anthony D. Whetton, Bill Deakin
Software Mentions: 1
Published: almost 4 years ago
10.1038/s42003-021-01903-x
Coagulation factor IX analysis in bioreactor cell culture supernatant predicts quality of the purified productCited by: 5
Author(s): Lucía F. Zacchi, Dinora Roche Recinos, Cassandra L. Pegg, Toan K. Phung, Mark Napoli, Campbell Aitken, Vanessa Sandford, Stephen M. Mahler, Yih Yean Lee, Benjamin L. Schulz, Christopher B. Howard
Software Mentions: 1
Published: over 3 years ago
10.1038/s42003-021-02385-7
Human blood microRNA hsa-miR-21-5p induces vitellogenin in the mosquito Aedes aegyptiCited by: 6
Author(s): Hugo D. Perdomo, Mazhar Hussain, Rhys Parry, Kayvan Etebari, Lauren M. Hedges, Guangmei Zhang, Benjamin L. Schulz, Sassan Asgari
Software Mentions: 1
Published: about 3 years ago
10.3390/ijms22020838
Multiplexed MRM-Based Proteomics Identified Multiple Biomarkers of Disease Severity in Human Heart FailureCited by: 5
Author(s): Maura Brioschi, Erica Gianazza, Piergiuseppe Agostoni, Beatrice Zoanni, Alice Mallia, Cristina Banfi
Software Mentions: 1
Published: over 3 years ago
10.1016/j.dib.2017.03.012
SRM dataset of the proteome of inactivated iron-sulfur cluster biogenesis regulator SufR in Synechocystis sp. PCC 6803Cited by: 3
Author(s): Linda Vuorijoki, Pauli T. Kallio, Eva‐Mari Aro
Software Mentions: 1
Published: over 7 years ago
10.1016/j.dib.2019.104579
Dataset supporting the proteomic characterization of human corneal epithelial cells with HSV-1 infectionCited by: 0
Author(s): Zhifeng Xu, Jiahui Li, Meijun Li, Wei Zheng, Hongwei Pan
Software Mentions: 1
Published: almost 5 years ago
10.3390/biom10060884
The Mutant p53-Driven Secretome Has Oncogenic Functions in Pancreatic Ductal Adenocarcinoma CellsCited by: 8
Author(s): Giovanna Butera, Jessica Brandi, Chiara Cavallini, Aldo Scarpa, Rita T. Lawlor, Maria Teresa Scupoli, Emílio Marengo, Daniela Cecconi, Marcello Manfredi, Massimo Donadelli
Software Mentions: 1
Published: over 4 years ago
10.1242/bio.058727
Targeted mass spectrometry for monitoring of neural differentiationCited by: 2
Author(s): Rita Suchá, Martina Kubickova, Jakub Červenka, Marián Hruška-Plocháň, Dáša Bohačiaková, Kateřina Vodičková Kepková, Tereza Nováková, Katerina Budkova, Andrej Šušor, Martin Mars̆ala, Jan Motlı́k, Hana Kovářová, Petr Vodička
Software Mentions: 1
Published: about 3 years ago
10.1093/bioinformatics/btz898
The use of missing values in proteomic data-independent acquisition mass spectrometry to enable disease activity discriminationCited by: 21
Author(s): Kathryn A McGurk, Arianna Dagliati, Davide Chiasserini, Dave Lee, Darren Plant, Ivona Baričević-Jones, Janet Kelsall, Rachael Eineman, Rachel Reed, Bethany Geary, Richard D. Unwin, Anna Nicolaou, Bernard Keavney, Anne Barton, Anthony D. Whetton, Nophar Geifman
Software Mentions: 1
Published: almost 5 years ago
10.3389/fnins.2021.643391
Low-Expressing Synucleinopathy Mouse Models Based on Oligomer-Forming Mutations and C-Terminal Truncation of α-SynucleinCited by: 4
Author(s): Ana Martinez Hernandez, Ivan Silbern, Insa Geffers, Lars Tatenhorst, Stefan Becker, Henning Urlaub, Markus Zweckstetter, Christian Griesinger, Gregor Eichele
Software Mentions: 1
Published: about 3 years ago
10.3389/fonc.2021.548243
Multiple Reaction Monitoring-Based Targeted Assays for the Validation of Protein Biomarkers in Brain TumorsCited by: 11
Author(s): Saicharan Ghantasala, Medha Gayathri J Pai, Deeptarup Biswas, Nikita Gahoi, Shuvolina Mukherjee, Manubhai Kp, Mehar Un Nissa, Alisha Srivastava, Sridhar Epari, Prakash Shetty, Aliasgar Moiyadi, Sanjeeva Srivastava
Software Mentions: 1
Published: over 3 years ago
10.1186/s12870-019-2076-4
Insight into transketolase of Pyropia haitanensis under desiccation stress based on integrative analysis of omics and transformationCited by: 10
Author(s): Jie Shi, Wenlei Wang, Yi-Sheng Lin, Kai Xu, Yan Xu, Dehua Ji, Changsheng Chen, Chaotian Xie
Software Mentions: 1
Published: almost 5 years ago