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Projects: bioconductor: MPRAnalyze

https://packages.ecosyste.ms/registries/bioconductor.org/packages/MPRAnalyze

Statistical Analysis of MPRA data
1 version
Latest release: over 2 years ago
5,683 downloads total

Enhanced Analysis
Repository Activity:
Repository Owner: Yosef Lab (organization)
Department of Systems Immunology, Weizmann Institute of Science Academic
README Analysis:
Science Score: 100/100
Starting Score: 100 points
Bonuses:
  • +8 Academic maintainer emails
    1 maintainers with academic email addresses
  • +20 Academic repository owner
    Repository owned by academic institution
  • +15 Institutional repository owner
    Repository owned by research institution
  • +2 Science terms in README
    1 scientific terms found in README
Very Likely Science (100)

Papers Mentioning MPRAnalyze 5

10.1186/s13059-020-02110-3
Cis and trans effects differentially contribute to the evolution of promoters and enhancers
Cited by: 26
Author(s): Kaia Mattioli, Winona Oliveros, Chiara Gerhardinger, Daniel Andergassen, Philipp G. Maass, John L. Rinn, Marta Melé
Software Mentions: 3
Published: almost 6 years ago
10.1371/journal.pcbi.1007504
Bayesian modelling of high-throughput sequencing assays with malacoda
Cited by: 1
Author(s): Andrew Ghazi, Xianguo Kong, Ed S. Chen, Leonard C. Edelstein, Chad A. Shaw
Software Mentions: 2
Published: almost 6 years ago
10.1186/s13059-019-1787-z
MPRAnalyze: statistical framework for massively parallel reporter assays
Cited by: 54
Author(s): Tal Ashuach, David Fischer, Anat Kreimer, Nadav Ahituv, Fabian J. Theis, Nir Yosef
Software Mentions: 2
Published: almost 7 years ago
10.1002/humu.23820
Meta‐analysis of massively parallel reporter assays enables prediction of regulatory function across cell types
Cited by: 13
Author(s): Anat Kreimer, Zhongxia Yan, Nadav Ahituv, Nir Yosef
Software Mentions: 1
Published: almost 7 years ago
10.7554/eLife.63713
The cis-regulatory effects of modern human-specific variants
Cited by: 33
Author(s): Carly Weiss, Lana Harshman, Fumitaka Inoue, Hunter B. Fraser, Dmitri A. Petrov, Nadav Ahituv, David Gokhman
Software Mentions: 1
Published: about 5 years ago