Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: bioconductor: MODA

https://packages.ecosyste.ms/registries/bioconductor.org/packages/MODA

MODA: MOdule Differential Analysis for weighted gene co-expression network
1 version
Latest release: about 1 year ago
10,238 downloads total

Papers Mentioning MODA 28

10.1186/s40168-020-00943-5
Roundup causes embryonic development failure and alters metabolic pathways and gut microbiota functionality in non-target species
Cited by: 26
Author(s): Antonio Suppa, Jouni Kvist, Xiaojing Li, Vignesh Dhandapani, Hanan Almulla, Antoine Y. Tian, Stephen Kissane, Jian Zhou, Alessio Perotti, Hayley Mangelson, Kyle W. Langford, Valeria Rossi, James B. Brown, Luisa Orsini
Software Mentions: 6
Published: almost 4 years ago
10.1080/13658816.2013.869821
An uncertainty and sensitivity analysis approach for GIS-based multicriteria landslide susceptibility mapping
Cited by: 116
Author(s): Bakhtiar Feizizadeh, Thomas Blaschke
Software Mentions: 3
Published: almost 11 years ago
10.7717/peerj.6917
Application of dynamic expansion tree for finding large network motifs in biological networks
Cited by: 6
Author(s): Sabyasachi Patra, Anjali Mohapatra
Software Mentions: 3
Published: over 5 years ago
10.7717/peerj-cs.370
An integrated cuckoo search optimizer for single and multi-objective optimization problems
Cited by: 3
Author(s): Xiangbo Qi, Zhaohui Yuan, Yan Song
Software Mentions: 3
Published: over 3 years ago
10.1107/S2052252521003729
Putative hexameric glycosyltransferase functional unit revealed by the crystal structure of <i>Acinetobacter baumannii</i> MurG
Cited by: 1
Author(s): Kyoung Ho Jung, Sunghoon Kwon, Chang Min Kim, Jun Hyuck Lee, Hyun Ho Park
Software Mentions: 2
Published: over 3 years ago
10.3389/fcell.2021.690461
Phosphoinositide Recognition Sites Are Blocked by Metabolite Attachment
Cited by: 5
Author(s): Troy A. Kervin, Brittany Wiseman, Michael Overduin
Software Mentions: 2
Published: over 3 years ago
10.1074/jbc.M114.561787
Structural Insights into the Activation of the RhoA GTPase by the Lymphoid Blast Crisis (Lbc) Oncoprotein
Cited by: 9
Author(s): Marc Lenoir, Masaaki Sugawara, Jaswant Kaur, Linda Ball, Michael Overduin
Software Mentions: 2
Published: over 10 years ago
10.3390/cells10051205
Regulation of the Phosphoinositide Code by Phosphorylation of Membrane Readers
Cited by: 6
Author(s): Troy A. Kervin, Michael Overduin
Software Mentions: 2
Published: over 3 years ago
10.1038/s41597-020-0533-4
Massive online data annotation, crowdsourcing to generate high quality sleep spindle annotations from EEG data
Cited by: 20
Author(s): Karine Lacourse, Benjamin David Yetton, Sara C. Mednick, Simon C. Warby
Software Mentions: 2
Published: over 4 years ago
10.1155/2019/9293617
Dragonfly Algorithm and Its Applications in Applied Science Survey
Cited by: 82
Author(s): Chnoor M. Rahman, Tarik A. Rashid
Software Mentions: 2
Published: almost 5 years ago
10.3390/e21100944
Credibilistic Mean-Semi-Entropy Model for Multi-Period Portfolio Selection with Background Risk
Cited by: 7
Author(s): Jun Zhang, Qian Li
Software Mentions: 2
Published: about 5 years ago
10.1007/s11205-020-02367-y
The Impact of a Conditional Cash Transfer on Multidimensional Deprivation of Young Women: Evidence from South Africa’s HTPN 068
Cited by: 10
Author(s): Kelly Kilburn, Lucia Ferrone, Audrey Pettifor, Ryan G. Wagner, F. Xavier Gómez‐Olivé, Kathleen Kahn
Software Mentions: 1
Published: over 4 years ago
10.1186/2193-1801-2-636
Persistent fear of aftershocks, impairment of working memory, and acute stress disorder predict post-traumatic stress disorder: 6-month follow-up of help seekers following the L’Aquila earthquake
Cited by: 21
Author(s): Rita Roncone, Laura Giusti, Monica Mazza, Valeria Bianchini, Donatella Ussorio, R. Pollice, M Casacchia
Software Mentions: 1
Published: almost 11 years ago
10.1007/s11263-020-01375-2
HOTA: A Higher Order Metric for Evaluating Multi-object Tracking
Cited by: 229
Author(s): Jonathon Luiten, Aljos̆a Os̆ep, Patrick Dendorfer, Philip H. S. Torr, Andreas Geiger, Laura Leal-Taixé, Bastian Leibe
Software Mentions: 1
Published: about 4 years ago
10.3390/ijms10104267
Biodegradation of Poly(butylene succinate) Powder in a Controlled Compost at 58 °C Evaluated by Naturally-Occurring Carbon 14 Amounts in Evolved CO2 Based on the ISO 14855-2 Method
Cited by: 36
Author(s): Masao Kunioka, Fumi Ninomiya, Masahiro Funabashi
Software Mentions: 1
Published: about 15 years ago
10.3390/ijms10083635
Biodegradability Evaluation of Polymers by ISO 14855-2
Cited by: 69
Author(s): Masahiro Funabashi, Fumi Ninomiya, Masao Kunioka
Software Mentions: 1
Published: over 15 years ago
10.1186/s12859-020-3441-x
Intrinsic limitations in mainstream methods of identifying network motifs in biology
Cited by: 3
Author(s): James Fodor, Michael Brand, Rebecca J. Stones, Ashley M. Buckle
Software Mentions: 1
Published: over 4 years ago
10.1113/JP278829
Relationship between cardiorespiratory phase coherence during hypoxia and genetic polymorphism in humans
Cited by: 9
Author(s): Gemma Lancaster, Tadej Debevec, Grégoire P. Millet, Mathias Poussel, Sarah J. Willis, Minca Mramor, Katja Goričar, Damjan Osredkar, Vita Dolžan, Aneta Stefanovska
Software Mentions: 1
Published: over 4 years ago
10.1186/s12859-017-1822-6
NemoProfile as an efficient approach to network motif analysis with instance collection
Cited by: 1
Author(s): Wooyoung Kim, Lynnette Haukap
Software Mentions: 1
Published: about 7 years ago
10.3390/ma14175109
Comparison of NSGA-II, MOALO and MODA for Multi-Objective Optimization of Micro-Machining Processes
Cited by: 17
Author(s): Milan Joshi, Ranjan Kumar Ghadai, S. Madhu, Kanak Kalita, Xiao‐Zhi Gao
Software Mentions: 1
Published: about 3 years ago
10.3390/membranes5040646
Membrane and Protein Interactions of the Pleckstrin Homology Domain Superfamily
Cited by: 39
Author(s): Marc Lenoir, Irina Kufareva, Ruben Abagyan, Michael Overduin
Software Mentions: 1
Published: about 9 years ago
10.1371/journal.pone.0043287
CytoKavosh: A Cytoscape Plug-In for Finding Network Motifs in Large Biological Networks
Cited by: 11
Author(s): Ali Masoudi‐Nejad, Mitra Ansariola, Zahra Razaghi Moghadam Kashani, Ali Salehzadeh‐Yazdi, Sahand Khakabimamaghani
Software Mentions: 1
Published: about 12 years ago
10.1371/journal.pone.0068073
QuateXelero: An Accelerated Exact Network Motif Detection Algorithm
Cited by: 45
Author(s): Sahand Khakabimamaghani, Iman Sharafuddin, Norbert Dichter, Ina Koch, Ali Masoudi‐Nejad
Software Mentions: 1
Published: over 11 years ago
10.3389/fnbeh.2016.00034
Group Intensive Cognitive Activation in Patients with Major or Mild Neurocognitive Disorder
Cited by: 11
Author(s): Simonetta Panerai, Domenica Tasca, Sabrina Musso, Valentina Catania, Federica Ruggeri, Alberto Raggi, Stefano Muratore, Giuseppina Prestianni, Cinzia Bonforte, Raffaele Ferri
Software Mentions: 1
Published: over 8 years ago
10.3389/fchem.2019.00203
Multiscale Modeling of Agglomerated Ceria Nanoparticles: Interface Stability and Oxygen Vacancy Formation
Cited by: 8
Author(s): Byung‐Hyun Kim, Jolla Kullgren, Matthew J. Wolf, Kersti Hermansson, Peter Broqvist
Software Mentions: 1
Published: over 5 years ago
10.4061/2011/739847
Evidence for Elevated Cerebrospinal Fluid ERK1/2 Levels in Alzheimer Dementia
Cited by: 12
Author(s): Philipp Spitzer, Heinke Schieb, Heike Kamrowski-Kruck, Markus Otto, Davide Chiasserini, Lucilla Parnetti, Sanna‐Kaisa Herukka, Johannes Schuchhardt, Jens Wiltfang, Hans-Wolfgang Klafki
Software Mentions: 1
Published: almost 14 years ago
10.1155/2020/9695324
Vitamin K Concentration and Cognitive Status in Elderly Patients on Anticoagulant Therapy: A Pilot Study
Cited by: 2
Author(s): Ludovico Alisi, Clodomiro Cafolla, Alessandra Gentili, Sara Tartaglione, Roberta Curini, Arturo Cafolla
Software Mentions: 1
Published: almost 5 years ago
10.3390/s18082449
QoS-Driven Adaptive Trust Service Coordination in the Industrial Internet of Things
Cited by: 4
Author(s): Jin Qi, Zian Wang, Bin Xu, Mengfei Wu, Zian Gao, Yuqing Sun
Software Mentions: 1
Published: over 6 years ago