Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: bioconductor: MIRA

https://packages.ecosyste.ms/registries/bioconductor.org/packages/MIRA

Methylation-Based Inference of Regulatory Activity
1 version
Latest release: about 1 year ago
1 dependent package
8,474 downloads total

Papers Mentioning MIRA 856

10.1128/MRA.01635-18
Complete Genome Sequence of Lactococcus lactis subsp. cremoris 3107, Host for the Model Lactococcal P335 Bacteriophage TP901-1
Cited by: 4
Author(s): Andrea Erazo Garzon, Jennifer Mahony, Francesca Bottacini, Philip Kelleher, Douwe van Sinderen
Software Mentions: 1
Published: almost 6 years ago
10.1128/MRA.00921-18
High-Quality Draft Genome Sequence of Xanthomonas sp. Strain CPBF 424, a Walnut-Pathogenic Strain with Atypical Features
Cited by: 7
Author(s): Clovis Torres Fernandes, Jochen Blom, Joël F. Pothier, Fernando Tavares
Software Mentions: 1
Published: about 6 years ago
10.1128/MRA.00262-20
Draft Genome Sequence of the Ascomycete Xylaria multiplex DSM 110363
Cited by: 0
Author(s): Enrico Büttner, Christiane Liers, Anne Richter, Martin Hofrichter, Harald Kellner
Software Mentions: 1
Published: over 4 years ago
10.1128/MRA.00845-19
Draft Genome Sequence of Xylaria hypoxylon DSM 108379, a Ubiquitous Fungus on Hardwood
Cited by: 2
Author(s): Enrico Büttner, Christiane Liers, Martin Hofrichter, Anna Maria Gebauer, Harald Kellner
Software Mentions: 1
Published: about 5 years ago
10.1128/MRA.00157-19
Draft Genome Sequence of Xylaria longipes DSM 107183, a Saprotrophic Ascomycete Colonizing Hardwood
Cited by: 2
Author(s): Enrico Büttner, Anna Maria Gebauer, Martin Hofrichter, Christiane Liers, Harald Kellner
Software Mentions: 1
Published: over 5 years ago
10.1128/MRA.00887-18
High-Quality Draft Genome Sequence of Xanthomonas arboricola pv. juglandis CPBF 1521, Isolated from Leaves of a Symptomatic Walnut Tree in Portugal without a Past of Phytosanitary Treatment
Cited by: 5
Author(s): Clovis Torres Fernandes, Jochen Blom, Joël F. Pothier, Fernando Tavares
Software Mentions: 1
Published: about 6 years ago
10.1128/MRA.01136-18
First Genome Sequence of Newcastle Disease Virus of Genotype VIIi from Jordan
Cited by: 5
Author(s): Mustafa Ababneh, Helena Lage Ferreira, Mohammad Khalifeh, David L. Suarez, Claudio L. Afonso
Software Mentions: 1
Published: almost 6 years ago
10.1128/MRA.00027-20
Draft Genome Sequence of Staphylococcus pseudintermedius Strain 13-13613, Isolated from a Case of Canine Pyoderma
Cited by: 1
Author(s): Inga Eichhorn, Antina Lübke‐Becker, Antje-Maria Lapschies, Megan E. Jacob, Wolfgang Bäumer, Marcus Fulde
Software Mentions: 1
Published: almost 5 years ago
10.3390/microorganisms9091869
In Vitro and In Vivo Assessment of the Potential of Escherichia coli Phages to Treat Infections and Survive Gastric Conditions
Cited by: 2
Author(s): Joanna Kaczorowska, Eoghan Casey, Gabriele Andrea Lugli, Marco Ventura, David J. Clarke, Douwe van Sinderen, Jennifer Mahony
Software Mentions: 1
Published: about 3 years ago
10.3390/microorganisms8111685
Lysogenization of a Lactococcal Host with Three Distinct Temperate Phages Provides Homologous and Heterologous Phage Resistance
Cited by: 10
Author(s): Sofía Ruiz‐Cruz, Elvina Parlindungan, Andrea Erazo Garzon, Mona Alqarni, Gabriele Andrea Lugli, Marco Ventura, Douwe van Sinderen, Jennifer Mahony
Software Mentions: 1
Published: about 4 years ago
10.3390/microorganisms7100396
Fatal Elephant Endotheliotropic Herpesvirus Infection of Two Young Asian Elephants
Cited by: 11
Author(s): Selvaraj Pavulraj, Kathrin Eschke, Adriane Prahl, Michael Flügger, Jakob Trimpert, Petra B. van den Doel, Sandro Andreotti, Sabine Kaessmeyer, Nikolaus Osterrieder, Walid Azab
Software Mentions: 1
Published: about 5 years ago
10.1080/23802359.2020.1791018
The complete plastid genome sequence of Gleditsia sinensis, an ancient medicinal tree in China
Cited by: 1
Author(s): Ji-Qing Bai, Lei Yang, Su Gao, Weixing Zhu, Luqi Huang
Software Mentions: 1
Published: over 4 years ago
10.1080/23802359.2020.1772136
The whole genome assembly and evolution analyze of carmine radish (Raphanus sativus L.) Mitochondrion
Cited by: 0
Author(s): Hua Peng, Jian Gao
Software Mentions: 1
Published: over 4 years ago
10.1080/23802359.2018.1495122
The complete nucleotide sequence of chloroplast genome of <i>Euphorbia kansui</i> (Euphorbiaceae), an endemic herb in China
Cited by: 3
Author(s): Mi‐Li Liu, Fan Wu, Yue Wu, Yingjuan Wang, Zhong-Hu Li
Software Mentions: 1
Published: over 6 years ago
10.1080/23802359.2018.1437806
Mitochondrial genome of an Allegheny Woodrat (<i>Neotoma magister</i>)
Cited by: 3
Author(s): Mandy Schofield, Joseph E. Duchamp, Jeffery L. Larkin, Timothy J. Smyser, Jacqueline Doyle
Software Mentions: 1
Published: almost 7 years ago
10.1080/23802359.2021.1960915
The complete mitogenome of the <i>Amolops jinjiangensis</i> (Anura: Ranidae)
Cited by: 1
Author(s): Ziwen Wang, Jun Ping, Yun Xia, Xiaomao Zeng, Jianghong Ran
Software Mentions: 1
Published: over 3 years ago
10.1080/23802359.2017.1422396
The complete mitochondrial genome of<i>Psammomys obesus</i>(Rodentia: Muridae)
Cited by: 2
Author(s): Yanhong Lan, Mengjia Liu, Yi Cao
Software Mentions: 1
Published: almost 7 years ago
10.1080/23802359.2021.1872440
Characteristic and phylogenetic analyses of chloroplast genome for <i>Ephedra monosperma</i> (Ephedraceae), an important medicinal species
Cited by: 0
Author(s): Ye Zhao, Yida Fan, Yanci Yang
Software Mentions: 1
Published: almost 4 years ago
10.1080/23802359.2019.1688697
Characterization of the complete plastid genome of fireweed, Epilobium angustifolium, Shaanxi, China
Cited by: 0
Author(s): Yuli Li, Shiyi Tang, Yu Cheng Dai, Yuting Jiang, Baoguo Li
Software Mentions: 1
Published: over 5 years ago
10.1080/23802359.2017.1280706
The complete mitochondrial genome of the White-Nose Syndrome pathogen, Pseudogymnoascus destructans
Cited by: 1
Author(s): Adrian Forsythe, Jianping Xu
Software Mentions: 1
Published: almost 8 years ago
10.1080/23802359.2019.1689863
Characterization of the complete plastid genome of <i>Acer tsinglingense</i>, an endemic tree species in China
Cited by: 3
Author(s): Peng-Bin Dong, Yu Liu, Qi-Yuan Gao, Ting Yang, Xueyi Chen, Jiayu Yang, Qianhan Shang, Min-Feng Fang
Software Mentions: 1
Published: over 5 years ago
10.1080/23802359.2019.1693297
The complete chloroplast genome sequence of <i>Pinus cembra</i> L. (Pinaceae)
Cited by: 1
Author(s): Thomas Schott, Hilke Schroeder, Katrin Schöning-Stierand, Birgit Kersten
Software Mentions: 1
Published: over 5 years ago
10.1080/23802359.2019.1629343
Complete chloroplast genome of the Meconopsis quintuplinervia (Papaveraceae), a traditional medicine of Tibetan
Cited by: 1
Author(s): Binduo Xu, Hengbo Kang, Shuai Luo, Qian Yang, Zhe Zhao, Fangfang Peng, Zhan‐Lin Liu
Software Mentions: 1
Published: over 5 years ago
10.1080/23802359.2017.1318686
Mitochondrial genome divergence between beluga whales in Baffin Bay and the Sea of Okhotsk
Cited by: 1
Author(s): Mikkel Skovrind, José Alfredo Samaniego Castruita, Mads Peter Heide‐Jørgensen, Love Dalén, Eline D. Lorenzen
Software Mentions: 1
Published: almost 8 years ago
10.1080/23802359.2018.1521312
Characterization of the whole plastid genome sequence of Abies chensiensis (Pinaceae), an endangered endemic conifer in China
Cited by: 1
Author(s): Mi‐Li Liu, Ji-Qing Bai, Wan-Lin Dong, Ruonan Wang, Peng-Bin Dong, Ning Wang, Hongyan Liu, Min-Feng Fang
Software Mentions: 1
Published: over 6 years ago
10.1080/23802359.2019.1704643
The complete plastome sequence of <i>Platanthera japonica</i> (Orchidaceae): an endangered medicinal and ornamental plant
Cited by: 2
Author(s): Xiao Zhang, Huaizhu Li, H. Z. Huang, Qiaoli Wang
Software Mentions: 1
Published: almost 5 years ago
10.1080/23802359.2021.1917311
Characterization of the DNA molecular sequence of complete plastid genome of Paeonia rockii subsp. taibaishanica, an endemic species in China
Cited by: 1
Author(s): Peng-Bin Dong, Li Zhang, Zhao-Ping Lu, Yuan Wang, Xiaoyu Song, Jiu-Xia Wang, Dan He, Xiaofeng Lei, Ma-Li Wang, Min-Feng Fang, Zhong-Hu Li
Software Mentions: 1
Published: over 3 years ago
10.1080/23802359.2016.1197077
Complete mitochondrial genome sequencing of central Indian domestic pig
Cited by: 4
Author(s): Ajit Singh, Kajal Kumar Jadav, Dharmendra Kumar, Nidhi Rajput, Awadh Bihari Srivastav, B. C. Sarkhel
Software Mentions: 1
Published: almost 9 years ago
10.1080/23802359.2018.1457993
Complete mitochondrial genome of Sargassum yezoense (Sargassaceae, Phaeophyceae)
Cited by: 0
Author(s): Kyeong Mi Kim, Jin-Tak Choi, Hwan Su Yoon, Hyeong Seok Jang, Ji Won Hong
Software Mentions: 1
Published: almost 7 years ago
10.1080/23802359.2021.1878958
The complete molecular sequence of chloroplast genome of <i>Lablab purpureus</i> (L.) Sweet
Cited by: 2
Author(s): Na Li, Ji-Qing Bai, Su Gao, Lei Yang, Jing Li, Shao-Bing Du, Xiaoping Wang
Software Mentions: 1
Published: over 3 years ago
10.1080/23802359.2019.1693924
The complete chloroplast genome of <i>Forsythia mira</i>, an endemic medicinal shrub in China
Cited by: 2
Author(s): Su Gao, Ji-Qing Bai, Mi‐Li Liu, Pengfei Wang, Na Li, Lei Yang, Xiaoping Wang, Zhong-Hu Li
Software Mentions: 1
Published: almost 5 years ago
10.1080/23802359.2017.1347830
The mitochondrial genomes of three species of poison frogs (Anura: Dendrobates)
Cited by: 2
Author(s): Mariana L. Lyra, Eugenia Sanchez, Sven Kuenzel, Stefan Loetters, Célio F. B. Haddad, Miguel Vences
Software Mentions: 1
Published: over 7 years ago
10.1080/23802359.2019.1627930
Complete chloroplast genome of a Chinese endemic species <i>Corydalis trisecta</i> Franch. (Papaveraceae)
Cited by: 6
Author(s): Nazish Kanwal, Xiao Zhang, Nawal Afzal, Jia Yang, Zhong-Hu Li, Guifang Zhao
Software Mentions: 1
Published: over 5 years ago
10.1080/23802359.2017.1339212
The mitochondrial genomes of Atlas Geckos (<i>Quedenfeldtia</i>): mitogenome assembly from transcriptomes and anchored hybrid enrichment datasets
Cited by: 6
Author(s): Mariana L. Lyra, Ulrich Joger, Ulrich Schulte, Tahar Slimani, El Hassan El Mouden, Abdellah Bouazza, Sven Künzel, Alan R. Lemmon, Emily Moriarty Lemmon, Miguel Vences
Software Mentions: 1
Published: almost 8 years ago
10.1080/23802359.2017.1285207
The complete mitochondrial genome of the subsocial cockroach<i>Nauphoeta cinerea</i>and phylogenomic analyses of Blattodea mitogenomes suggest reclassification of superfamilies
Cited by: 5
Author(s): Ana Teresa Nogueira Dumans, Danielle Bertino Grimaldi, Carolina Furtado, Ednildo A. Machado, Francisco Prosdocimi
Software Mentions: 1
Published: almost 8 years ago
10.1080/23802359.2016.1275844
The complete mitochondrial genome of a cryptic amphipod species from the <i>Gammarus fossarum</i> complex
Cited by: 11
Author(s): Jan Niklas Macher, Florian Leese, Alexander Weigand, Andrey Rozenberg
Software Mentions: 1
Published: almost 8 years ago
10.1080/23802359.2019.1636728
The complete chloroplast genome sequence of <i>Liparis japonica</i> (Orchidaceae)
Cited by: 6
Author(s): Jianfang Li, Qian Yang, Zhan‐Lin Liu
Software Mentions: 1
Published: over 5 years ago
10.1080/23802359.2020.1866452
Characteration and comparative analysis of the whole chloroplast genomes of five common millet (<i>Panicum miliaceum</i>)
Cited by: 1
Author(s): Xiaoan Cao, Sichen Liu, Zhixin Mu, Qiao Zhang
Software Mentions: 1
Published: over 3 years ago
10.1080/23802359.2019.1687031
The complete chloroplast genome sequence of <i>Mentha canadensis</i> (Labiatae), a traditional Chinese herbal medicine
Cited by: 1
Author(s): Huaizhu Li, Lin Yang, Ji-Qing Bai, An Qiuyan, Dou Liu, Rui-Xue She
Software Mentions: 1
Published: almost 5 years ago
10.1080/23802359.2021.1918029
Characteristic and phylogenetic analyses of chloroplast genome for <i>Syringa komarowii</i> C.K.Schneid. (Oleaceae) from Huoditang, China, an important horticultural plant
Cited by: 1
Author(s): Yongqin Cheng, Zaimin Jiang, Jing Cai
Software Mentions: 1
Published: over 3 years ago
10.1093/molbev/msz181
Parallel Evolution of Complex Centipede Venoms Revealed by Comparative Proteotranscriptomic Analyses
Cited by: 24
Author(s): Ronald A. Jenner, Björn M. von Reumont, Lahcen I. Campbell, Eivind A.B. Undheim
Software Mentions: 1
Published: over 5 years ago
10.3390/molecules23040850
Monitoring of the Apple Fruit Moth: Detection of Genetic Variation and Structure Applying a Novel Multiplex Set of 19 STR Markers
Cited by: 2
Author(s): Abdelhameed Elameen, Hans Geir Eiken, Ida Fløystad, Geir Knudsen, Snorre B. Hagen
Software Mentions: 1
Published: over 6 years ago
10.3390/molecules23092165
Comparative Analyses of Chloroplast Genomes of Cucurbitaceae Species: Lights into Selective Pressures and Phylogenetic Relationships
Cited by: 20
Author(s): Xiao Zhang, Tao Zhou, Jia Yang, Jingjing Sun, Miao-Miao Ju, Yuemei Zhao, Guifang Zhao
Software Mentions: 1
Published: about 6 years ago
10.3390/vaccines9020182
Protection against Different Genotypes of Newcastle Disease Viruses (NDV) Afforded by an Adenovirus-Vectored Fusion Protein and Live NDV Vaccines in Chickens
Cited by: 6
Author(s): Helena Lage Ferreira, Patti J. Miller, David L. Suarez
Software Mentions: 1
Published: over 3 years ago
10.1186/1297-9716-45-40
Perfrin, a novel bacteriocin associated with netB positive Clostridium perfringens strains from broilers with necrotic enteritis
Cited by: 41
Author(s): Leen Timbermont, Lina De Smet, Filip Van Nieuwerburgh, Valeria R. Parreira, Gonzalez Van Driessche, Freddy Haesebrouck, Richard Ducatelle, John F. Prescott, Dieter Deforce, Bart Devreese, Filip Van Immerseel
Software Mentions: 1
Published: almost 11 years ago
10.1186/s12985-017-0741-5
A robust and cost-effective approach to sequence and analyze complete genomes of small RNA viruses
Cited by: 72
Author(s): Kiril M. Dimitrov, Poonam Sharma, Jeremy D. Volkening, Iryna V. Goraichuk, Abdul Wajid, Shafqat Fatima Rehmani, Asma Basharat, Ismaila Shittu, Tony M. Joannis, Patti J. Miller, Claudio L. Afonso
Software Mentions: 1
Published: over 7 years ago
10.3390/v11040318
Characterization of Two Pseudomonas aeruginosa Viruses vB_PaeM_SCUT-S1 and vB_PaeM_SCUT-S2
Cited by: 22
Author(s): Yangyijun Guo, Ping Chen, Zhanglin Lin, Tingting Wang
Software Mentions: 1
Published: over 5 years ago
10.3390/v11050393
Isolation and Characterization of Lactobacillus brevis Phages
Cited by: 20
Author(s): Marine Feyereisen, Jennifer Mahony, Gabriele Andrea Lugli, Marco Ventura, Horst Neve, Charles M. A. P. Franz, Jean-Paul Noben, Tadhg O’Sullivan, Douwe van Sinderen
Software Mentions: 1
Published: over 5 years ago
10.3390/v11090810
First Isolation and Rapid Identification of Newcastle Disease Virus from Aborted Fetus of Dromedary Camel Using Next-Generation Sequencing
Cited by: 4
Author(s): Jade L. L. Teng, Ulrich Wernery, Hwei Huih Lee, Sunitha Joseph, Joshua Fung, Shyna K. Elizabeth, Kai-Yan Yeong, Jöerg Kinne, Kwok‐Hung Chan, Susanna K. P. Lau, Patrick C. Y. Woo
Software Mentions: 1
Published: about 5 years ago
10.3390/v11100899
A Quest of Great Importance-Developing a Broad Spectrum Escherichia coli Phage Collection
Cited by: 9
Author(s): Joanna Kaczorowska, Eoghan Casey, Horst Neve, Charles M. A. P. Franz, Jean-Paul Noben, Gabriele Andrea Lugli, Marco Ventura, Douwe van Sinderen, Jennifer Mahony
Software Mentions: 1
Published: about 5 years ago
10.3390/v13061073
Full-Genome Sequences of Alphacoronaviruses and Astroviruses from Myotis and Pipistrelle Bats in Denmark
Cited by: 13
Author(s): Christina M. Lazov, Graham J. Belsham, Anette Bøtner, Thomas Bruun Rasmussen
Software Mentions: 1
Published: over 3 years ago
10.1186/s13071-020-04187-y
The complete mitochondrial genome of the Columbia lance nematode, Hoplolaimus columbus, a major agricultural pathogen in North America
Cited by: 12
Author(s): Xinyuan Ma, Paula Agudelo, Vincent P. Richards, Juán Antonio Baeza
Software Mentions: 1
Published: over 4 years ago
10.1186/s13071-015-0834-1
Identification of candidate mimicry proteins involved in parasite-driven phenotypic changes
Cited by: 20
Author(s): François Hébert, Luke Phelps, Irene E. Samonte, Mahesh Panchal, Stephan Grambauer, Iain Barber, Martin Kalbe, Christian R. Landry, Nadia Aubin‐Horth
Software Mentions: 1
Published: over 9 years ago
10.3390/pathogens10060638
Identification of an Attenuated Substrain of Francisella tularensis SCHU S4 by Phenotypic and Genotypic Analyses
Cited by: 2
Author(s): Julie Lovchik, Douglas S. Reed, Julie A. Hutt, Fangfang Xia, Rick Stevens, Thero Modise, Eileen M. Barry, Terry Wu
Software Mentions: 1
Published: over 3 years ago
10.3390/pathogens3010093
Live Genomics for Pathogen Monitoring in Public Health
Cited by: 4
Author(s): Giuseppe D’Auria, Maria Victoria Schneider, Andrés Moya
Software Mentions: 1
Published: almost 11 years ago
10.3390/pathogens10070810
Equine Herpesvirus Type 4 (EHV-4) Outbreak in Germany: Virological, Serological, and Molecular Investigations
Cited by: 8
Author(s): Selvaraj Pavulraj, Kathrin Eschke, Jana Theisen, Stephanie Westhoff, Gitta Reimers, Sandro Andreotti, Nikolaus Osterrieder, Walid Azab
Software Mentions: 1
Published: over 3 years ago
10.3390/pathogens3010057
Genetic Diversity of Tick-Borne Rickettsial Pathogens; Insights Gained from Distant Strains
Cited by: 14
Author(s): Sebastián Aguilar Pierlé, Iván Imaz-Rosshandler, Ammielle Kerudin, Jacqueline Sambono, A.E. Lew-Tabor, Peter Rolls, Claudia Rangel‐Escareño, Kelly A. Brayton
Software Mentions: 1
Published: almost 11 years ago
10.7717/peerj.5486
A bioinformatics approach to identifying<i>Wolbachia</i>infections in arthropods
Cited by: 40
Author(s): Jane Pascar, Christopher H. Chandler
Software Mentions: 1
Published: about 6 years ago
10.7717/peerj.2733
Comparative analysis of the Rotarix™ vaccine strain and G1P[8] rotaviruses detected before and after vaccine introduction in Belgium
Cited by: 14
Author(s): Mark Zeller, Elisabeth Heylen, Sana Tamim, John K. McAllen, Ewen F. Kirkness, Asmik Akopov, Sarah De Coster, Marc Van Ranst, Jelle Matthijnssens
Software Mentions: 1
Published: almost 8 years ago
10.7717/peerj.6563
A systematic comparison of eight new plastome sequences from <i>Ipomoea</i> L
Cited by: 8
Author(s): Junling Sun, Xiaofeng Dong, Qinghe Cao, Tao Xu, Mingku Zhu, Jian Sun, Tingting Dong, Daifu Ma, Yonghua Han, Zongyun Li
Software Mentions: 1
Published: over 5 years ago
10.7717/peerj.167
Galaxy tools and workflows for sequence analysis with applications in molecular plant pathology
Cited by: 132
Author(s): Peter J. A. Cock, Björn Grüning, Konrad Paszkiewicz, Leighton Pritchard
Software Mentions: 1
Published: about 11 years ago
10.7717/peerj.6271
Accessible molecular phylogenomics at no cost: obtaining 14 new mitogenomes for the ant subfamily Pseudomyrmecinae from public data
Cited by: 19
Author(s): Gabriel Alves Vieira, Francisco Prosdocimi
Software Mentions: 1
Published: almost 6 years ago
10.7717/peerj.2896
Panel strain of<i>Klebsiella pneumoniae</i>for beta-lactam antibiotic evaluation: their phenotypic and genotypic characterization
Cited by: 16
Author(s): Roshan D’Souza, Naina Adren Pinto, In Sik Hwang, Young Lag Cho, Dongeun Yong, Jah Yeon Choi, Kyungwon Lee, Yunsop Chong
Software Mentions: 1
Published: almost 8 years ago
10.7717/peerj.8759
Mitochondrial genomes of<i>Columbicola</i>feather lice are highly fragmented, indicating repeated evolution of minicircle-type genomes in parasitic lice
Cited by: 20
Author(s): Andrew D. Sweet, Kevin P. Johnson, Stephen L. Cameron
Software Mentions: 1
Published: over 4 years ago
10.7717/peerj.1403
Phylogenetic analysis of higher-level relationships within Hydroidolina (Cnidaria: Hydrozoa) using mitochondrial genome data and insight into their mitochondrial transcription
Cited by: 40
Author(s): Ehsan Kayal, Bastian Bentlage, Paulyn Cartwright, Angel A. Yanagihara, Dhugal J. Lindsay, Russell R. Hopcroft, Allen G. Collins
Software Mentions: 1
Published: about 9 years ago
10.7717/peerj.4307
Metagenomic analysis of orange colored protrusions from the muscle of Queen Conch<i>Lobatus gigas</i>(Linnaeus, 1758)
Cited by: 5
Author(s): Jaison H. Cuartas, Juan F. Alzate, Claudia Ximena Moreno Herrera, Edna J. Márquez
Software Mentions: 1
Published: almost 7 years ago
10.7717/peerj.6045
Combining ultraconserved elements and mtDNA data to uncover lineage diversity in a Mexican highland frog (<i>Sarcohyla</i>; Hylidae)
Cited by: 31
Author(s): Eugenia Zarza, Elizabeth M. Connors, James M. Maley, Whitney L. E. Tsai, Peter Heimes, Moisés Kaplan, John E. McCormack
Software Mentions: 1
Published: almost 6 years ago
10.7717/peerj.2938
Transcriptome analysis of<i>Polygonum minus</i>reveals candidate genes involved in important secondary metabolic pathways of phenylpropanoids and flavonoids
Cited by: 35
Author(s): Kok-Keong Loke, Reyhaneh Rahnamaie-Tajadod, Chean-Chean Yeoh, Hoe-Han Goh, Zeti‐Azura Mohamed‐Hussein, Zamri Zainal, Ismanizan Ismail, Normah Mohd Noor
Software Mentions: 1
Published: over 7 years ago
10.7717/peerj-cs.599
Improving patient rehabilitation performance in exercise games using collaborative filtering approach
Cited by: 4
Author(s): Waidah Ismail, Ismail Ahmed Al-Qasem Al-Hadi, Crina Groşan, Rimuljo Hendradi
Software Mentions: 1
Published: over 3 years ago
10.3390/pharmaceutics13071098
Layer-by-Layer Nanoparticles of Tamoxifen and Resveratrol for Dual Drug Delivery System and Potential Triple-Negative Breast Cancer Treatment
Cited by: 32
Author(s): Ali A. Al-jubori, Ghassan M. Sulaiman, Amer T. Tawfeeq, Hamdoon A. Mohammed, Riaz A. Khan, Salman A. A. Mohammed
Software Mentions: 1
Published: over 3 years ago
10.3390/plants10020342
Generation of Chloroplast Molecular Markers to Differentiate Sophora toromiro and Its Hybrids as a First Approach to Its Reintroduction in Rapa Nui (Easter Island)
Cited by: 6
Author(s): Ignacio Pezoa, Javier Villacreses, Miguel Rubilar, Carolina Pizarro, María Jesús Galleguillos, Troy Ejsmentewicz, Beatriz Fonseca, Jaime Espejo, Víctor Polanco, Carolina Sánchez
Software Mentions: 1
Published: almost 4 years ago
10.1371/journal.pbio.1002415
Remotely Sensed High-Resolution Global Cloud Dynamics for Predicting Ecosystem and Biodiversity Distributions
Cited by: 248
Author(s): Arnold Wilson, Walter Jetz
Software Mentions: 1
Published: over 8 years ago
10.1371/journal.pcbi.1004753
GRAbB: Selective Assembly of Genomic Regions, a New Niche for Genomic Research
Cited by: 42
Author(s): Balázs Brankovics, Hao Zhang, Anne D. van Diepeningen, Theo A. J. van der Lee, C. Waalwijk, G.S. de Hoog
Software Mentions: 1
Published: over 8 years ago
10.1371/journal.pcbi.1008972
A method for achieving complete microbial genomes and improving bins from metagenomics data
Cited by: 16
Author(s): Lauren M. Lui, Torben Nielsen, Adam P. Arkin
Software Mentions: 1
Published: over 3 years ago
10.1371/journal.pcbi.1002936
Comparative RNA-seq Analysis in the Unsequenced Axolotl: The Oncogene Burst Highlights Early Gene Expression in the Blastema
Cited by: 112
Author(s): Ron Stewart, Cynthia Alexander Rascon, Shulan Tian, Jeff Nie, Christopher Barry, Li‐Fang Chu, Hamisha Ardalani, Ryan J. Wagner, Mitchell D. Probasco, Jennifer M. Bolin, Ning Leng, Srikumar Sengupta, Michael Volkmer, Bianca Habermann, Elly M. Tanaka, James A. Thomson, Colin N. Dewey
Software Mentions: 1
Published: over 11 years ago
10.1371/currents.dis.d05f908b179343c8b4705cf44c15dbe9
Funding Based on Needs? A Study on the Use of Needs Assessment Data by a Major Humanitarian Health Assistance Donor in its Decisions to Allocate Funds
Cited by: 5
Author(s): Emma Olin, Johan von Schreeb
Software Mentions: 1
Published: almost 11 years ago
10.1371/currents.dis.d59e0fa39887031e1c3763851a6e5c2a
How Bad Is It? Usefulness of the "7eed Model" for Scoring Severity and Level of Need in Complex Emergencies
Cited by: 0
Author(s): Anneli Eriksson, Guillaume Martin, Richard Garfield, Thorkild Tylleskär, Johan von Schreeb
Software Mentions: 1
Published: almost 9 years ago
10.1371/journal.pntd.0001513
The Transcriptome Analysis of Strongyloides stercoralis L3i Larvae Reveals Targets for Intervention in a Neglected Disease
Cited by: 31
Author(s): Antonio Marcilla, Gagan Garg, Dolores Bernal, Shoba Ranganathan, Javier Forment, Javier Ortiz, Carla Muñoz‐Antoli, Michel Dominguez, Laia Pedrola, Juan F. Martínez-Blanch, Javier Sotillo, María Trelis, Rafael Toledo, J. Guillermo Esteban
Software Mentions: 1
Published: over 12 years ago
10.1371/journal.pone.0027021
Deep Sequencing the Transcriptome Reveals Seasonal Adaptive Mechanisms in a Hibernating Mammal
Cited by: 84
Author(s): Marshall Hampton, Richard G Melvin, Anne H. Kendall, Brian Kirkpatrick, Nichole Peterson, Matthew T. Andrews
Software Mentions: 1
Published: about 13 years ago
10.1371/journal.pone.0148453
De Novo Assembled Wheat Transcriptomes Delineate Differentially Expressed Host Genes in Response to Leaf Rust Infection
Cited by: 34
Author(s): Saket Chandra, Dharmendra Singh, Jyoti Pathak, Supriya Kumari, Manish Kumar, Raju Poddar, H. S. Balyan, P. K. Gupta, K. V. Prabhu, Kunal Mukhopadhyay
Software Mentions: 1
Published: almost 9 years ago
10.1371/journal.pone.0158547
Long Term Effects on Risk Factors for Cardiovascular Disease after 12-Months of Aerobic Exercise Intervention - A Worksite RCT among Cleaners
Cited by: 13
Author(s): Mette Korshøj, Mark Lidegaard, Peter Krustrup, Marie Birk Jørgensen, Karen Søgaard, Andreas Holtermann
Software Mentions: 1
Published: over 8 years ago
10.1371/journal.pone.0003488
The Diaphragm and Lubricant Gel for Prevention of Cervical Sexually Transmitted Infections: Results of a Randomized Controlled Trial
Cited by: 47
Author(s): Gita Ramjee, Ariane van der Straten, Tsungai Chipato, Guy de Bruyn, Kelly Blanchard, Stephen Shiboski, Helen Cheng, Elizabeth T. Montgomery, Nancy Padian
Software Mentions: 1
Published: about 16 years ago
10.1371/journal.pone.0062404
Can Long-Range PCR Be Used to Amplify Genetically Divergent Mitochondrial Genomes for Comparative Phylogenetics? A Case Study within Spiders (Arthropoda: Araneae)
Cited by: 15
Author(s): Andrew G. Briscoe, Sara L. Goodacre, Susan E. Masta, Martin I. Taylor, Miquel A. Arnedo, David Penney, John Kenny, Simon Creer
Software Mentions: 1
Published: over 11 years ago
10.1371/journal.pone.0095501
A Method Enabling High-Throughput Sequencing of Human Cytomegalovirus Complete Genomes from Clinical Isolates
Cited by: 23
Author(s): Steven Sijmons, Kim Thys, Michaël Corthout, Ellen Van Damme, Marnix Van Loock, Stefanie Bollen, Sylvie Baguet, Jeroen Aerssens, Marc Van Ranst, Piet Maes
Software Mentions: 1
Published: over 10 years ago
10.1371/journal.pone.0035009
Transcriptomics of In Vitro Immune-Stimulated Hemocytes from the Manila Clam Ruditapes philippinarum Using High-Throughput Sequencing
Cited by: 96
Author(s): Rebeca Moreira, Pablo Balseiro, Josep V. Planas, Berta Fusté, Sergi Beltrán, Beatriz Novoa, António Figueras
Software Mentions: 1
Published: over 12 years ago
10.1371/journal.pone.0219797
Xanthomonas citri subsp. citri and Xanthomonas arboricola pv. pruni: Comparative analysis of two pathogens producing similar symptoms in different host plants
Cited by: 7
Author(s): Jerson Garita-Cambronero, Marta Sena-Vélez, E. Ferragud, P. Sabuquillo, Cristina Redondo, Jaime Cubero
Software Mentions: 1
Published: over 5 years ago
10.1371/journal.pone.0102973
Gene Discovery through Transcriptome Sequencing for the Invasive Mussel Limnoperna fortunei
Cited by: 45
Author(s): Marcela Uliano-Silva, Juliana Alves Americo, Rodrigo de Moraes Brindeiro, Francesco Dondero, Francisco Prosdocimi, Mauro de Freitas Rebelo
Software Mentions: 1
Published: over 10 years ago
10.1371/journal.pone.0030875
Characterization of the Viral Microbiome in Patients with Severe Lower Respiratory Tract Infections, Using Metagenomic Sequencing
Cited by: 157
Author(s): Fredrik Lysholm, Anna Wetterbom, Cecilia Lindau, Hamid Darban, Annelie Bjerkner, Kristina Fahlander, Anders Lindberg, Bengt Persson, Tobias Allander, Björn Andersson
Software Mentions: 1
Published: almost 13 years ago
10.1371/journal.pone.0085079
Transcriptome Analysis in Cotton Boll Weevil (Anthonomus grandis) and RNA Interference in Insect Pests
Cited by: 51
Author(s): Alexandre Augusto Pereira Firmino, Fernando Campos de Assis Fonseca, Leonardo Lima Pepino Macedo, Roberta Ramos Coelho, José Dijair Antonino, Roberto Coiti Togawa, Orzenil B. Silva‐Junior, Georgios Joannis Pappas, Maria Cristina Mattar da Silva, Gilbert Engler, Maria Fátima Grossi‐de‐Sá
Software Mentions: 1
Published: almost 11 years ago
10.1371/journal.pone.0088492
RNA-seq Analysis of Early Hepatic Response to Handling and Confinement Stress in Rainbow Trout
Cited by: 30
Author(s): Sixin Liu, Guangtu Gao, Yniv Palti, Beth M. Cleveland, Gregory M. Weber, Caird E. Rexroad
Software Mentions: 1
Published: almost 11 years ago
10.1371/journal.pone.0102668
Transcriptome Analysis of the Mud Crab (Scylla paramamosain) by 454 Deep Sequencing: Assembly, Annotation, and Marker Discovery
Cited by: 30
Author(s): Hongyu Ma, Chunyan Ma, Shujuan Li, Wei Jiang, Xin-Cang Li, Yuexing Liu, Lan Ma
Software Mentions: 1
Published: over 10 years ago
10.1371/journal.pone.0060263
A Comparison of the Olfactory Gene Repertoires of Adults and Larvae in the Noctuid Moth Spodoptera littoralis
Cited by: 98
Author(s): Erwan Poivet, Aurore Gallot, Nicolas Montagné, Nicolas Glaser, Fabrice Legeai, Emmanuelle Jacquin‐Joly
Software Mentions: 1
Published: over 11 years ago
10.1371/journal.pone.0021634
Spinning Gland Transcriptomics from Two Main Clades of Spiders (Order: Araneae) - Insights on Their Molecular, Anatomical and Behavioral Evolution
Cited by: 30
Author(s): Francisco Prosdocimi, Daniela Bittencourt, Felipe Rodrigues da Silva, Matias Kirst, Paulo César Motta, E. L. Rech
Software Mentions: 1
Published: over 13 years ago
10.1371/journal.pone.0117392
Genome Analysis of a Novel Bradyrhizobium sp. DOA9 Carrying a Symbiotic Plasmid
Cited by: 39
Author(s): Shin Okazaki, Rujirek Noisangiam, Takashi Okubo, Takakazu Kaneko, Koichiro Oshima, Masahira Hattori, Kamonluck Teamtisong, Pongpan Songwattana, Panlada Tittabutr, Nantakorn Boonkerd, Kazuhiko Saeki, Shusei Sato, Toshiki Uchiumi, Kiwamu Minamisawa, Neung Teaumroong
Software Mentions: 1
Published: over 9 years ago
10.1371/journal.pone.0035369
High-Throughput Sequence Analysis of Turbot (Scophthalmus maximus) Transcriptome Using 454-Pyrosequencing for the Discovery of Antiviral Immune Genes
Cited by: 97
Author(s): Patricia Pereiro, Pablo Balseiro, Alejandro Romero, S. Dios, Gabriel Forn-Cuní, Berta Fusté, Josep V. Planas, Sergi Beltrán, Beatriz Novoa, António Figueras
Software Mentions: 1
Published: over 12 years ago
10.1371/journal.pone.0086012
Sequencing, De Novo Assembly and Annotation of the Colorado Potato Beetle, Leptinotarsa decemlineata, Transcriptome
Cited by: 61
Author(s): Abhishek Kumar, Leonardo Congiu, Leena Lindström, Saija Piiroinen, Michele Vidotto, Alessandro Grapputo
Software Mentions: 1
Published: almost 11 years ago
10.1371/journal.pone.0015522
CpG Demethylation Enhances Alpha-Synuclein Expression and Affects the Pathogenesis of Parkinson's Disease
Cited by: 263
Author(s): Lumine Matsumoto, Hiroshi Takuma, Akira Tamaoka, Hiroshi Kurisaki, Hidetoshi Date, Shoji Tsuji, Atsushi Iwata
Software Mentions: 1
Published: almost 14 years ago
10.1371/journal.pone.0159762
Preservation Obscures Pelagic Deep-Sea Fish Diversity: Doubling the Number of Sole-Bearing Opisthoproctids and Resurrection of the Genus Monacoa (Opisthoproctidae, Argentiniformes)
Cited by: 10
Author(s): Jan Yde Poulsen, Tetsuya Sadõ, Christoph Hahn, Ingvar Byrkjedal, Masatoshi Moku, Masaki Miya
Software Mentions: 1
Published: over 8 years ago
10.1371/journal.pone.0085965
Adaptation of Musca domestica L. Field Population to Laboratory Breeding Causes Transcriptional Alterations
Cited by: 10
Author(s): Dorte H. Højland, Karl Martin Vagn Jensen, Michael Kristensen
Software Mentions: 1
Published: almost 11 years ago
10.1371/journal.pone.0199982
Resolving deep-sea pelagic saccopharyngiform eel mysteries: Identification of Neocyema and Monognathidae leptocephali and establishment of a new fish family "Neocyematidae" based on larvae, adults and mitogenomic gene orders
Cited by: 12
Author(s): Jan Yde Poulsen, Michael J. Miller, Tetsuya Sadõ, Reinhold Hanel, Katsumi Tsukamoto, Masaki Miya
Software Mentions: 1
Published: over 6 years ago