Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: bioconductor: MIRA

https://packages.ecosyste.ms/registries/bioconductor.org/packages/MIRA

Methylation-Based Inference of Regulatory Activity
1 version
Latest release: about 1 year ago
1 dependent package
8,474 downloads total

Papers Mentioning MIRA 856

10.1128/genomeA.01027-14
Draft Genome Sequence of FT9, a Novel Bacillus cereus Strain Isolated from a Brazilian Thermal Spring
Cited by: 1
Author(s): Tainá Raiol, Marlene Teixeira De‐Souza, João Victor Araújo Oliveira, Helena Schubert da Incarnação Lima Silva, Juliana Capella de Orem, Danilo Andrade Cavalcante, Nalvo F. Almeida, Guilherme P. Telles, João Carlos Setúbal, Marcelo M. Brigido, Fernando Araripe Gonçalves Torres, Peter F. Stadler, Maria Emília M. T. Walter, Lídia Maria Pepe de Moraes
Software Mentions: 1
Published: about 10 years ago
10.1128/genomeA.01056-14
Complete Genome Sequence of the Solvent Producer Clostridium saccharoperbutylacetonicum Strain DSM 14923
Cited by: 21
Author(s): Anja Poehlein, Preben Krabben, Peter Dürre, Rolf Daniel
Software Mentions: 1
Published: about 10 years ago
10.1128/genomeA.01142-14
Exploring the Genome of Cheese Starter Lactic Acid Bacterium Lactococcus lactis subsp. <i>lactis</i> CECT 4433
Cited by: 4
Author(s): Diogo Tschoeke, Ana Paula B. Moreira, Luciane A. Chimetto Tonon, Maria Gefé da Rosa Mesquita, Gustavo Bueno Gregoracci, Bruno Gómez‐Gil, Rogério Valle, Cristiane C. Thompson, Fabiano L. Thompson
Software Mentions: 1
Published: almost 10 years ago
10.1128/genomeA.01214-14
Draft Genome Sequence of Taylorella equigenitalis Strain MCE529, Isolated from a Belgian Warmblood Horse
Cited by: 1
Author(s): Laurent Hébert, Fabrice Touzain, Claire de Boisséson, Marie-France Breuil, Fabien Duquesne, Claire Laugier, Yannick Blanchard, Sandrine Pétry
Software Mentions: 1
Published: almost 10 years ago
10.1128/genomeA.00873-14
Draft Genome Sequences of Antibiotic-Resistant Commensal Escherichia coli
Cited by: 1
Author(s): Meghan Garrett, Jennifer Parker, Craig Stephens
Software Mentions: 1
Published: almost 10 years ago
10.1128/genomeA.01258-14
Draft Genome Sequence of Anoxybacillus flavithermus Strain 25, Isolated from the Garga Hot Spring in the Barguzin Valley, Baikal Region, Russian Federation
Cited by: 6
Author(s): А. С. Розанов, A. V. Bryanskaya, Anastasia V. Kotenko, Tatiana K. Malup, S. E. Peltek
Software Mentions: 1
Published: almost 10 years ago
10.1128/genomeA.01356-14
Draft Genome Sequence of Clostridium butyricum Strain NOR 33234, Isolated from an Elderly Patient with Diarrhea
Cited by: 9
Author(s): Jamie Sui-Lam Kwok, Margaret Ip, Ting‐Fung Chan, Wai Yip Lam, Stephen Kwok-Wing Tsui
Software Mentions: 1
Published: almost 10 years ago
10.1128/genomeA.01350-14
Genome Sequence of the Heteropolysaccharide-Producing Strain Lactobacillus mucosae DPC 6426
Cited by: 9
Author(s): Paul M. Ryan, Caitriona M. Guinane, Lis E. E. London, Philip Kelleher, Gerald F. Fitzgerald, Noel M. Caplice, R. Paul Ross, Catherine Stanton
Software Mentions: 1
Published: over 9 years ago
10.1128/genomeA.01392-14
Draft Genome Sequence of the Cyanobacterium Aphanizomenon flos-aquae Strain 2012/KM1/D3, Isolated from the Curonian Lagoon (Baltic Sea)
Cited by: 14
Author(s): Sigitas Šulčius, Gediminas Alzbutas, Kotryna Kvederavičiūtė, Judita Koreivienė, Linas Zakrys, Arvydas Lubys, Ričardas Paškauskas
Software Mentions: 1
Published: over 9 years ago
10.1128/genomeA.01430-14
Draft Genome Sequence of Acinetobacter oleivorans PF1, a Diesel-Degrading and Plant-Growth-Promoting Endophytic Strain Isolated from Poplar Trees Growing on a Diesel-Contaminated Plume
Cited by: 7
Author(s): Panagiotis Gkorezis, François Rineau, Jonathan D. Van Hamme, Andrea Franzetti, Matteo Daghio, Sofie Thijs, Nele Weyens, Jaco Vangronsveld
Software Mentions: 1
Published: over 9 years ago
10.1128/genomeA.01591-14
Complete Genome Sequence of the Nitrogen-Fixing and Solvent-Producing Clostridium pasteurianum DSM 525
Cited by: 20
Author(s): Anja Poehlein, Alexander Grosse-Honebrink, Ying Zhang, Nigel P. Minton, Rolf Daniel
Software Mentions: 1
Published: over 9 years ago
10.1128/genomeA.01596-14
Closed Genome Sequence of Clostridium pasteurianum ATCC 6013
Cited by: 15
Author(s): Carlo Rotta, Anja Poehlein, Katrin Schwarz, Peter McClure, Rolf Daniel, Nigel P. Minton
Software Mentions: 1
Published: over 9 years ago
10.1128/genomeA.00112-15
Genome Sequence of Corynebacterium ulcerans Strain FRC11
Cited by: 5
Author(s): Leandro de Jesus Benevides, Marcus Vinícius Canário Viana, Diego Mariano, Flávia Souza Rocha, Priscilla Bagano, Edson Luiz Folador, Felipe Luiz Pereira, Fernanda Alves Dorella, Carlos Augusto Gomes Leal, Alex F. Carvalho, Siomar de Castro Soares, Adriana Ribeiro Carneiro, Rommel Thiago Jucá Ramos, Edgar Badell-Ocando, Nicole Guiso, Artur M. S. Silva, Henrique César Pereira Figueiredo, Vasco Azevedo, Luís Carlos Guimarães
Software Mentions: 1
Published: over 9 years ago
10.1128/genomeA.00182-15
Complete Genome Sequences of Escherichia coli Strains 1303 and ECC-1470 Isolated from Bovine Mastitis
Cited by: 15
Author(s): Andreas Leimbach, Anja Poehlein, Anika Witten, Flemming Scheutz, Y.H. Schukken, Rolf Daniel, Ulrich Dobrindt
Software Mentions: 1
Published: over 9 years ago
10.1128/genomeA.00114-15
High-Quality Draft Genome Sequence of Actinobacterium Kibdelosporangium sp. MJ126-NF4, Producer of Type II Polyketide Azicemicins, Using Illumina and PacBio Technologies
Cited by: 6
Author(s): Yasushi Ogasawara, Norah Torrez-Martínez, Anthony D. Aragon, Benjamin J. Yackley, Jessica A. Weber, Anitha Sundararajan, Thiruvarangan Ramaraj, Jeremy S. Edwards, Charles E. Melançon
Software Mentions: 1
Published: over 9 years ago
10.1128/genomeA.00122-15
Draft Genome Sequence of Micrococcus sp. Strain MS-AsIII-49, an Arsenate-Reducing Isolate from Tropical Metal-Rich Sediment
Cited by: 2
Author(s): Patrícia S. Costa, Diogo A. Tschoeke, Bruno S. O. Silva, Fabiano L. Thompson, Mariana P. Reis, Edmar Chartone-Souza, Andréa M. A. Nascimento
Software Mentions: 1
Published: over 9 years ago
10.1128/genomeA.00254-15
Whole-Genome Sequences of Five Burkholderia pseudomallei Isolates from Australian Cystic Fibrosis Patients
Cited by: 9
Author(s): Linda T. Viberg, Erin P. Price, Timothy J. Kidd, Scott C. Bell, Bart J. Currie, Derek S. Sarovich
Software Mentions: 1
Published: over 9 years ago
10.1128/genomeA.00317-15
Draft Genome Sequence of Enterobacter aerogenes, a DDE-Degrading and Plant Growth-Promoting Strain Isolated from <i>Cucurbita pepo</i>
Cited by: 5
Author(s): Nele Eevers, Jonathan D. Van Hamme, Eric Bottos, Nele Weyens, Jaco Vangronsveld
Software Mentions: 1
Published: over 9 years ago
10.1128/genomeA.00382-15
Genome Sequence of the Acidophilic Ferrous Iron-Oxidizing Isolate Acidithrix ferrooxidans Strain Py-F3, the Proposed Type Strain of the Novel Actinobacterial Genus Acidithrix
Cited by: 6
Author(s): Sebastian Eisen, Anja Poehlein, D. Barrie Johnson, Rolf Daniel, Michael Schlömann, Martin Mühling
Software Mentions: 1
Published: over 9 years ago
10.1128/genomeA.00383-15
Genome Sequence of the Acidophilic Iron Oxidizer Ferrimicrobium acidiphilum Strain T23 T
Cited by: 5
Author(s): Sebastian Eisen, Anja Poehlein, D. Barrie Johnson, Rolf Daniel, Michael Schlömann, Martin Mühling
Software Mentions: 1
Published: over 9 years ago
10.1128/genomeA.00525-15
Draft Genome Sequences of Corynebacterium kroppenstedtii CNM633/14 and CNM632/14, Multidrug-Resistant and Antibiotic-Sensitive Isolates from Nodules of Granulomatous Mastitis Patients
Cited by: 7
Author(s): María Isabel Fernández-Natal, Francisco Soriano, Jaime Ariza-Miguel, Teresa Marrodan-Ciordia, Alberto Acedo, Marta Hernández, Andreas Tauch, David Rodrı́guez-Lázaro
Software Mentions: 1
Published: over 9 years ago
10.1128/genomeA.00193-15
Draft Genome Sequences of Three Capnocytophaga canimorsus Strains Isolated from Septic Patients
Cited by: 4
Author(s): Pablo Manfredi, Francesco Renzi, Guy R. Cornelis
Software Mentions: 1
Published: over 9 years ago
10.1128/genomeA.00436-15
Draft Genome Sequence of Bacillus sp. Strain CMAA 1185, a Cellullolytic Bacterium Isolated from Stain House Lake, Antarctic Peninsula
Cited by: 2
Author(s): Suikinai Nobre Santos, Vanessa Nessner Kavamura, Rodrigo Gouvêa Taketani, Rafael Leandro de Figueiredo Vasconcellos, Tiago Domingues Zucchi, I. S. de Melo
Software Mentions: 1
Published: over 9 years ago
10.1128/genomeA.00554-15
Draft Genome Sequence of Paenibacillus sp. Strain DMB20, Isolated from Alang Ship-Breaking Yard, Which Harbors Genes for Xenobiotic Degradation
Cited by: 2
Author(s): B. S. Shah, Kunal Jain, Namrata Patel, Ramesh Pandit, Anand Patel, Chaitanya G. Joshi, Datta Madamwar
Software Mentions: 1
Published: over 9 years ago
10.1128/genomeA.00678-15
Complete Genome Sequence of Leptospira interrogans Serovar Bratislava, Strain PigK151
Cited by: 5
Author(s): David P. Alt, Jennifer H. Wilson-Welder, Darrell O. Bayles, Caroline E. Cameron, Ben Adler, Dieter Bulach, Torsten Seemann, Michael J. Lehane, Lee R. Haines, Alistair C. Darby, Neil Hall, Alan Radford, Richard L. Zuerner
Software Mentions: 1
Published: over 9 years ago
10.1128/genomeA.00461-15
Draft Genome Sequence of a Highly Virulent Rabbit Staphylococcus aureus Strain
Cited by: 3
Author(s): Zoltán Német, Ervin Albert, Tibor Nagy, Ferenc Olasz, János Kiss, Ádám Dán, Krisztiàn Bányai, Katleen Hermans, Imre Biksi
Software Mentions: 1
Published: about 9 years ago
10.1128/genomeA.00765-15
Draft Genome Sequences of the Two Unrelated Macrolide-Resistant Corynebacterium argentoratense Strains CNM 463/05 and CNM 601/08, Isolated from Patients in the University Hospital of León, Spain
Cited by: 3
Author(s): María Isabel Fernández-Natal, Francisco Soriano, Alberto Acedo, Marta Hernández, Andreas Tauch, David Rodrı́guez-Lázaro
Software Mentions: 1
Published: about 9 years ago
10.1128/genomeA.00876-15
Draft Genome Sequence of the Picocyanobacterium Synechococcus sp. Strain GFB01, Isolated from a Freshwater Lagoon in the Brazilian Amazon
Cited by: 5
Author(s): Pedro Ivo Guimarães, Tiago Leão, Aline Grasielle Costa de Melo, Rommel Thiago Jucá Ramos, Artur M. S. Silva, Marli Fátima Fiore, Maria Paula Cruz Schneider
Software Mentions: 1
Published: about 9 years ago
10.1128/genomeA.00881-15
Genome Sequence of the Moderately Acidophilic Sulfate-Reducing Firmicute Desulfosporosinus acididurans (Strain M1 T )
Cited by: 7
Author(s): Patrick Petzsch, Anja Poehlein, D. Barrie Johnson, Rolf Daniel, Michael Schlömann, Martin Mühling
Software Mentions: 1
Published: about 9 years ago
10.1128/genomeA.00869-15
Draft Genome Sequence of Corynebacterium striatum 1961 BR-RJ/09, a Multidrug-Susceptible Strain Isolated from the Urine of a Hospitalized 37-Year-Old Female Patient
Cited by: 9
Author(s): Ana Luíza Mattos‐Guaraldi, Luís Carlos Guimarães, Carolina S.A.B. Santos, Adonney Allan de Oliveira Veras, Adriana Ribeiro Carneiro, Siomar C. Soares, Juliana Nunes Ramos, Cassius Souza, Verônica Viana Vieira, Raphael Hirata, Vasco Azevedo, Luis Gustavo Carvalho Pacheco, Artur M. S. Silva, Rommel Thiago Jucá Ramos
Software Mentions: 1
Published: about 9 years ago
10.1128/genomeA.00906-15
Draft Genome Sequence of Antarctic <i>Pseudomonas</i> sp. Strain KG01 with Full Potential for Biotechnological Applications
Cited by: 6
Author(s): María S. Pavlov, Felipe Lira, José Luis Martínez, Jorge Olivares, Sergio H. Marshall
Software Mentions: 1
Published: about 9 years ago
10.1128/genomeA.00904-15
Draft Genome Sequence of Pseudomonas putida JLR11, a Facultative Anaerobic 2,4,6-Trinitrotoluene Biotransforming Bacterium
Cited by: 7
Author(s): Javier Pascual, Zulema Udaondo, Lázaro Molina, Ana Segura, Abraham Estéve-Núñez, Antonio Caballero, Estrella Duque, Juan L. Ramos, Pieter van Dillewijn
Software Mentions: 1
Published: about 9 years ago
10.1128/genomeA.01114-15
Genome Sequence of Stachybotrys chartarum Strain 51-11
Cited by: 6
Author(s): Doris Betancourt, Timothy R. Dean, Jean H. Kim, Josh Levy
Software Mentions: 1
Published: about 9 years ago
10.1128/genomeA.01143-15
Complete Genome Sequence of <i>Coriobacteriaceae</i> Strain 68-1-3, a Novel Mucus-Degrading Isolate from the Swine Intestinal Tract
Cited by: 6
Author(s): Torey Looft, Darrell O. Bayles, David P. Alt, Thad B. Stanton
Software Mentions: 1
Published: about 9 years ago
10.1128/genomeA.01231-15
Draft Genome Sequence of Komagataeibacter europaeus CECT 8546, a Cellulose-Producing Strain of Vinegar Elaborated by the Traditional Method
Cited by: 5
Author(s): María José Valera, Anja Poehlein, María-Jesús Torija, Frederike S. Haack, Rolf Daniel, Wolfgang R. Streit, Estíbaliz Mateo, Albert Mas
Software Mentions: 1
Published: about 9 years ago
10.1128/genomeA.01264-15
Draft Genome Sequence of Achromobacter sp. Strain DMS1, Capable of Degrading Polyaromatic Hydrocarbons Isolated from the Industrially Perturbed Environment of Amlakhadi Canal, India
Cited by: 1
Author(s): Shivani Amin, B. S. Shah, Kunal Jain, Anand Patel, Namrata Patel, Chaitanya G. Joshi, Datta Madamwar
Software Mentions: 1
Published: about 9 years ago
10.1128/genomeA.01192-15
First Complete Genome Sequence of Felis catus Gammaherpesvirus 1
Cited by: 4
Author(s): Ryan M. Troyer, Justin S. Lee, Momchilo Vuyisich, Patrick Chain, Chien‐Chi Lo, Brent Kronmiller, Shay Bracha, Anne C. Avery, Sue VandeWoude
Software Mentions: 1
Published: almost 9 years ago
10.1128/genomeA.01301-15
Draft Genome Sequences of Nine Streptococcus suis Strains Isolated in the United States
Cited by: 8
Author(s): Samantha J. Hau, Darrell O. Bayles, David P. Alt, Susan L. Brockmeier, Timothy S. Frana, Tracy L. Nicholson
Software Mentions: 1
Published: almost 9 years ago
10.1128/genomeA.01439-15
Draft Genome Sequence of a Probiotic Strain, Lactobacillus fermentum UCO-979C
Cited by: 4
Author(s): Andrey V. Karlyshev, Julio Villena, Carlos González, Leonardo Albarracín, Javier Barros, Antonio Manuel Rodríguez García
Software Mentions: 1
Published: almost 9 years ago
10.1128/genomeA.01517-15
Draft Genome Sequence of <i>Arthrobacter</i> sp. Strain SPG23, a Hydrocarbon-Degrading and Plant Growth-Promoting Soil Bacterium
Cited by: 10
Author(s): Panagiotis Gkorezis, Eric Bottos, Jonathan D. Van Hamme, Sofie Thijs, François Rineau, Andrea Franzetti, María Balseiro-Romero, Nele Weyens, Jaco Vangronsveld
Software Mentions: 1
Published: almost 9 years ago
10.1128/genomeA.01581-15
Identification and Complete Genome Sequence Analysis of a Genotype XIV Newcastle Disease Virus from Nigeria
Cited by: 4
Author(s): Ismaila Shittu, Poonam Sharma, Jeremy D. Volkening, Ponman Solomon, Lanre Sulaiman, Tony M. Joannis, Dawn Williams-Coplin, Patti J. Miller, Kiril M. Dimitrov, Claudio L. Afonso
Software Mentions: 1
Published: over 8 years ago
10.1128/genomeA.01716-15
Complete Genome Sequence of a Genotype XVII Newcastle Disease Virus, Isolated from an Apparently Healthy Domestic Duck in Nigeria
Cited by: 14
Author(s): Ismaila Shittu, Poonam Sharma, Tony M. Joannis, Jeremy D. Volkening, Georgina N. Odaibo, David O. Olaleye, Dawn Williams-Coplin, Ponman Solomon, Célia Abolnik, Patti J. Miller, Kiril M. Dimitrov, Claudio L. Afonso
Software Mentions: 1
Published: over 8 years ago
10.1128/genomeA.00084-16
Genome Sequence of Elizabethkingia anophelis Strain EaAs1, Isolated from the Asian Malaria Mosquito Anopheles stephensi
Cited by: 15
Author(s): Juan A. Raygoza Garay, Grant L. Hughes, Vikas Koundal, Jason L. Rasgon, Michael M. Mwangi
Software Mentions: 1
Published: over 8 years ago
10.1128/genomeA.00085-16
Genome Sequences of <i>Staphylococcus hominis</i> Strains ShAs1, ShAs2, and ShAs3, Isolated from the Asian Malaria Mosquito <i>Anopheles stephensi</i>
Cited by: 9
Author(s): Grant L. Hughes, Juan A. Raygoza Garay, Vikas Koundal, Jason L. Rasgon, Michael M. Mwangi
Software Mentions: 1
Published: over 8 years ago
10.1128/genomeA.00086-16
Genome Sequence of <i>Stenotrophomonas maltophilia</i> Strain SmAs1, Isolated From the Asian Malaria Mosquito <i>Anopheles stephensi</i>
Cited by: 14
Author(s): Grant L. Hughes, Juan A. Raygoza Garay, Vikas Koundal, Jason L. Rasgon, Michael M. Mwangi
Software Mentions: 1
Published: over 8 years ago
10.1128/genomeA.00184-16
Draft Genome Sequence of the Dimorphic Fungus <i>Sporothrix pallida</i> , a Nonpathogenic Species Belonging to <i>Sporothrix,</i> a Genus Containing Agents of Human and Feline Sporotrichosis
Cited by: 23
Author(s): Enrico D’Alessandro, Domenico Giosa, Lilin Huang, Jing Zhang, Wenchao Gao, Balázs Brankovics, Manoel Marques Evangelista Oliveira, Fabio Scordino, Carla Lo Passo, Giuseppe Criseo, Anne D. van Diepeningen, Huaiqiu Huang, G.S. de Hoog, Orazio Romeo
Software Mentions: 1
Published: over 8 years ago
10.1128/genomeA.00189-16
Draft Genome Sequence of the N <sub>2</sub> -Fixing Cyanobacterium <i>Nostoc piscinale</i> CENA21, Isolated from the Brazilian Amazon Floodplain
Cited by: 5
Author(s): Tiago Leão, Pedro Ivo Guimarães, Aline Grasielle Costa de Melo, Rommel Thiago Jucá Ramos, Pedro N. Leão, Artur M. S. Silva, Marli Fátima Fiore, Maria Paula Cruz Schneider
Software Mentions: 1
Published: over 8 years ago
10.1128/genomeA.00211-16
Draft Genome Sequence of <i>Paenibacillus</i> sp. Strain DMB5, Acclimatized and Enriched for Catabolizing Anthropogenic Compounds
Cited by: 2
Author(s): Jenny Johnson, B. S. Shah, Kunal Jain, Nidhi Parmar, Ankit T. Hinsu, Namrata Patel, Chaitanya G. Joshi, Datta Madamwar
Software Mentions: 1
Published: over 8 years ago
10.1128/genomeA.00551-16
Complete Chloroplast Genome Sequence of Phagomixotrophic Green Alga <i>Cymbomonas tetramitiformis</i>
Cited by: 7
Author(s): Anchittha Satjarak, Amber Paasch, Linda E. Graham, Eun-Soo Kim
Software Mentions: 1
Published: over 8 years ago
10.1128/genomeA.00570-16
Draft Genome Sequences of <i>Kosmotoga</i> sp. Strain DU53 and Kosmotoga arenicorallina S304
Cited by: 3
Author(s): Stephen M. J. Pollo, Rhianna Charchuk, Camilla Nesbø
Software Mentions: 1
Published: over 8 years ago
10.1128/genomeA.00620-16
Draft Genome Sequence of Acetobacter malorum CECT 7742, a Strain Isolated from Strawberry Vinegar
Cited by: 0
Author(s): Florencia Sainz, Albert Mas, María-Jesús Torija
Software Mentions: 1
Published: over 8 years ago
10.1128/genomeA.00621-16
Draft Genome Sequences of Gluconobacter cerinus CECT 9110 and Gluconobacter japonicus CECT 8443, Acetic Acid Bacteria Isolated from Grape Must
Cited by: 3
Author(s): Florencia Sainz, Albert Mas, María-Jesús Torija
Software Mentions: 1
Published: over 8 years ago
10.1128/genomeA.00629-16
Genome Sequence of the Red Pigment-Forming Meiothermus taiwanensis Strain RP Isolated from Paniphala Hot Spring, India
Cited by: 5
Author(s): Trinetra Mukherjee, Sucharita Bose, Urmimala Sen, Chayan Roy, Moidu Jameela Rameez, Wriddhiman Ghosh, Subhra Kanti Mukhopadhyay
Software Mentions: 1
Published: over 8 years ago
10.1128/genomeA.00610-16
Complete Genome Sequence of the Hyperthermophilic and Piezophilic Archeon <i>Thermococcus piezophilus</i> CDGS <sup>T</sup> , Able To Grow under Extreme Hydrostatic Pressures
Cited by: 5
Author(s): Cécile Dalmasso, Philippe Oger, Damien Courtine, Myriam Georges, Ken Takai, Loïs Maignien, Karine Alain
Software Mentions: 1
Published: about 8 years ago
10.1128/genomeA.00705-16
Complete Genome Sequence of <i>Moraxella osloensis</i> Strain KMC41, a Producer of 4-Methyl-3-Hexenoic Acid, a Major Malodor Compound in Laundry
Cited by: 8
Author(s): Tomio Goto, Hideki Hirakawa, Yuji Morita, Junko Tomida, Jun Sato, Yuta Matsumura, Asako Mitani, Yu Niwano, Kohei Takeuchi, Hiromi Kubota, Y. Kawamura
Software Mentions: 1
Published: about 8 years ago
10.1128/genomeA.00729-16
Complete Genome Sequence of an Avian Paramyxovirus Representative of Putative New Serotype 13
Cited by: 19
Author(s): Iryna V. Goraichuk, Poonam Sharma, B. T. Stegniy, Denys Muzyka, Mary J. Pantin‐Jackwood, Anton Gerilovych, Oleksii Solodiankin, В. И. Болотин, Patti J. Miller, Kiril M. Dimitrov, Claudio L. Afonso
Software Mentions: 1
Published: about 8 years ago
10.1128/genomeA.01320-15
Whole-Genome Sequence of Mycobacterium bovis BCG-1 (Russia)
Cited by: 7
Author(s): R.I. Ludannyy, Maria Alvarez Figueroa, Diana Levi, Mikhail L. Markelov, Vladimir G. Dedkov, Н. В. Александрова, German A. Shipulin
Software Mentions: 1
Published: almost 9 years ago
10.1128/genomeA.00820-16
Draft Genome Sequences of <i>Citrobacter freundii</i> Strains CF04 and A41 Isolated from Moribund, Septicemic Giant Gourami ( <i>Osphronemus goramy)</i> in Sri Lanka
Cited by: 2
Author(s): Karim Honein, S. S. S. De S. Jagoda, A. Arulkanthan, Hideki Ushio, Shuichi Asakawa
Software Mentions: 1
Published: about 8 years ago
10.1128/genomeA.00845-16
Complete Genome Sequence of Genotype VI Newcastle Disease Viruses Isolated from Pigeons in Pakistan
Cited by: 4
Author(s): Abdul Wajid, Shafqat Fatima Rehmani, Poonam Sharma, Iryna V. Goraichuk, Kiril M. Dimitrov, Claudio L. Afonso
Software Mentions: 1
Published: about 8 years ago
10.1128/genomeA.00974-16
Draft Genome Sequence of Two Strains of Xanthomonas arboricola Isolated from <i>Prunus persica</i> Which Are Dissimilar to Strains That Cause Bacterial Spot Disease on <i>Prunus</i> spp
Cited by: 6
Author(s): Jerson Garita-Cambronero, Ana Palacio-Bielsa, Marı́a M. López, Jaime Cubero
Software Mentions: 1
Published: about 8 years ago
10.1128/genomeA.01074-16
Complete Genome Sequence of NC983, a Live Attenuated Strain of Salmonella enterica Serovar Typhimurium
Cited by: 2
Author(s): Bryan Troxell, Ryan C. Fink, Allison N. Dickey, Elizabeth H. Scholl, Hosni M. Hassan
Software Mentions: 1
Published: about 8 years ago
10.1128/genomeA.01123-16
Complete Genome Sequence of Brucella abortus SKN 13 Isolated from Placenta of Aborted Cattle in Gujarat, India
Cited by: 1
Author(s): H.C. Chauhan, Bharat K. Patel, B.S. Chandel, Kirit B. Patel, Arun Patel, M.D. Shrimali, Snehal S. Patel, A.G. Bhagat, Manish Rajgor, Mitul A. Patel, M.G. Patel A.C. Patel, Jitendra Kala, Bharat K. Patel
Software Mentions: 1
Published: about 8 years ago
10.1128/genomeA.01223-16
Draft Genome Sequence of Lactobacillus crispatus C25 Isolated from Chicken Cecum
Cited by: 4
Author(s): Morvarid Rezvani, Mary Mendoza, Matthew D. Koci, Caitlyn Daron, Josh Levy, Hosni M. Hassan
Software Mentions: 1
Published: almost 8 years ago
10.1128/genomeA.01229-16
Draft Genome Sequences of Lactobacillus animalis Strain P38 and Lactobacillus reuteri Strain P43 Isolated from Chicken Cecum
Cited by: 4
Author(s): Morvarid Rezvani, Mary Mendoza, Matthew D. Koci, Caitlyn Daron, Josh Levy, Hosni M. Hassan
Software Mentions: 1
Published: almost 8 years ago
10.1128/genomeA.00906-16
Genome Sequences of Eight Prophages Isolated from Lactococcus lactis Dairy Strains
Cited by: 3
Author(s): Joana Oliveira, Jennifer Mahony, Gabriele Andrea Lugli, Laurens Hanemaaijer, Thijs R. H. M. Kouwen, Marco Ventura, Douwe van Sinderen
Software Mentions: 1
Published: almost 8 years ago
10.1128/genomeA.01220-16
Complete Genome Sequence of an African Swine Fever Virus Isolate from Sardinia, Italy
Cited by: 18
Author(s): Fredrik Granberg, Claudia Torresi, Annalisa Oggiano, Maja Malmberg, Carmen Iscaro, Gian Mario De Mia, Sándor Bélak
Software Mentions: 1
Published: almost 8 years ago
10.1128/genomeA.01287-16
Genome Sequences of Three Species of <i>Hanseniaspora</i> Isolated from Spontaneous Wine Fermentations
Cited by: 26
Author(s): Peter R. Sternes, Danna Lee, Dariusz R. Kutyna, Anthony R. Borneman
Software Mentions: 1
Published: almost 8 years ago
10.1128/genomeA.01306-16
Draft Genome Sequence of <i>Cyanobacterium</i> sp. Strain IPPAS B-1200 with a Unique Fatty Acid Composition
Cited by: 5
Author(s): Alexander Y. Starikov, Aizhan A. Usserbaeva, Maria A. Sinetova, Fariza K. Sarsekeyeva, B. K. Zayadan, Vera V. Ustinova, Elena V. Kupriyanova, Dmitry A. Los, Kirill S. Mironov
Software Mentions: 1
Published: almost 8 years ago
10.1128/genomeA.01192-16
Complete Genome Sequences of Six Chrysodeixis includens Nucleopolyhedrovirus Isolates from Brazil and Guatemala
Cited by: 11
Author(s): Saluana R. Craveiro, Luis Arthur V. M. Santos, Roberto Coiti Togawa, Peter W. Inglis, Priscila Grynberg, Z. M. A. Ribeiro, Bergmann Morais Ribeiro, M. E. B. Castro
Software Mentions: 1
Published: almost 8 years ago
10.1128/genomeA.01497-16
Draft Genome Sequence of Weissella confusa MBF8-1, a Glucansucrase- and Bacteriocin-Producing Strain Isolated from a Homemade Soy Product
Cited by: 7
Author(s): Nicholas C. K. Heng, Chia Wen Yeh, Amarila Malik
Software Mentions: 1
Published: almost 8 years ago
10.1128/genomeA.01534-16
Draft Genome Sequence of Plant Growth-Promoting Drought-Tolerant <i>Bacillus</i> sp. Strain CMAA 1363 Isolated from the Brazilian Caatinga Biome
Cited by: 3
Author(s): Vanessa Nessner Kavamura, Suikinai Nobre Santos, Rodrigo Gouvêa Taketani, Rafael Leandro de Figueiredo Vasconcellos, I. S. de Melo
Software Mentions: 1
Published: almost 8 years ago
10.1128/genomeA.01592-16
Draft Genome Sequence of the Suttonella ornithocola Bacterium
Cited by: 0
Author(s): Hiba Waldman Ben‐Asher, Rebecca Yerushalmi, Chaim Wachtel, Efrat Barbiro-Michaely, D Sompolinsky, Doron Gerber
Software Mentions: 1
Published: almost 8 years ago
10.1128/genomeA.01667-16
Complete Genome Sequence of the Hyperthermophilic Piezophilic Archaeon Pyrococcus kukulkanii NCB100 Isolated from the Rebecca’s Roost Hydrothermal Vent in the Guaymas Basin
Cited by: 1
Author(s): Philippe Oger, Nolwenn Callac, Christine Oger-Desfeux, Sandrine Hughes, Benjamin Gillet, Mohamed Jebbar, Anne Godfroy
Software Mentions: 1
Published: almost 8 years ago
10.1128/genomeA.01659-16
Complete Genome Sequence of Bifidobacterium longum W11 (LMG P-21586), Used as a Probiotic Strain
Cited by: 3
Author(s): Rosanna Inturri, Marco Ventura, Patricia Ruas‐Madiedo, Gabriele Andrea Lugli, G Blandino
Software Mentions: 1
Published: over 7 years ago
10.1128/genomeA.00027-17
Draft Genome Sequence of Bacillus licheniformis VSD4, a Diesel Fuel–Degrading and Plant Growth–Promoting Phyllospheric Bacterium
Cited by: 3
Author(s): Vincent Stevens, Sofie Thijs, Breanne McAmmond, Tori Langill, Jonathan D. Van Hamme, Nele Weyens, Jaco Vangronsveld
Software Mentions: 1
Published: over 7 years ago
10.1128/genomeA.00037-17
First Insights into the Genome Sequence of the Strictly Anaerobic Homoacetogenic Sporomusa sphaeroides Strain E (DSM 2875)
Cited by: 8
Author(s): Genis Castillo-Villamizar, Rolf Daniel, Anja Poehlein
Software Mentions: 1
Published: over 7 years ago
10.1128/genomeA.00083-17
Draft Genome Sequence of Corynebacterium pseudotuberculosis Strain PA06 Isolated from a Subauricular Abscess in an Ovine Host
Cited by: 0
Author(s): Joana Montezano Marques, Vitória Almeida Gonçalves de Moura, Alyne Cristina Sodré Lima, Carla Thais Moreira Paixão, Amália Raiana Fonseca Lobato, Jorianne Thyeska Castro Alves, Ana Luíza de Mattos Guaraldi, Adriana Ribeiro Carneiro Folador, Rommel Thiago Jucá Ramos, Artur M. S. Silva
Software Mentions: 1
Published: over 7 years ago
10.1128/genomeA.00089-17
Draft Genome Sequence of Caenibacillus caldisaponilyticus B157 <sup>T</sup> , a Thermophilic and Phospholipase-Producing Bacterium Isolated from Acidulocompost
Cited by: 1
Author(s): Yasuhiro Tsujimoto, Ryo Saito, Takehiko Sahara, Nobutada Kimura, Noriko Tsuruoka, Yasushi Shigeri, Kunihiko Watanabe
Software Mentions: 1
Published: over 7 years ago
10.1128/genomeA.00297-17
Draft Genome Sequence of Lactobacillus reuteri CECT8605
Cited by: 0
Author(s): Ana I. Sañudo, Mónica Olivares, Óscar Bañuelos
Software Mentions: 1
Published: over 7 years ago
10.1128/genomeA.00299-17
Resequencing the Genome of Bifidobacterium breve Strain CECT7263
Cited by: 1
Author(s): Noelia Martínez, Roberto Luque, Mónica Olivares, Abelardo Margollés, Óscar Bañuelos
Software Mentions: 1
Published: over 7 years ago
10.1128/genomeA.00472-17
Complete Genome Sequences of Four Avian Paramyxoviruses of Serotype 10 Isolated from Rockhopper Penguins on the Falkland Islands
Cited by: 5
Author(s): Iryna V. Goraichuk, Kiril M. Dimitrov, Poonam Sharma, Patti J. Miller, David E. Swayne, David L. Suarez, Claudio L. Afonso
Software Mentions: 1
Published: over 7 years ago
10.1128/genomeA.00211-17
Genome Sequence of Serratia marcescens Phage BF
Cited by: 9
Author(s): Eoghan Casey, Brian Fitzgerald, Jennifer Mahony, Gabriele Andrea Lugli, Marco Ventura, Douwe van Sinderen
Software Mentions: 1
Published: over 7 years ago
10.1128/genomeA.00525-17
Draft Genome Sequences of Seven Streptococcus agalactiae Strains Isolated from Camelus dromedarius at the Horn of Africa
Cited by: 4
Author(s): Julian Rothen, Tobias Schindler, Joël F. Pothier, Mario Younan, Ulrich Certa, Claudia Daubenberger, Valentin Pflüger, Joerg Jores
Software Mentions: 1
Published: over 7 years ago
10.1128/genomeA.00725-17
Complete Genome Sequences of Three Novel Pseudomonas fluorescens SBW25 Bacteriophages, Noxifer, Phabio, and Skulduggery
Cited by: 9
Author(s): Joanna K. Wojtus, Jess L. Fitch, Eli Christian, Tara Dalefield, Jacob K. Lawes, K. Ashok Kumar, Craig L. Peebles, Eric Altermann, Heather Hendrickson
Software Mentions: 1
Published: over 7 years ago
10.1128/genomeA.00708-17
Draft Genome Sequence of Cercospora cf. sigesbeckiae , a Causal Agent of Cercospora Leaf Blight on Soybean
Cited by: 6
Author(s): Sebastian Albu, Sandeep Sharma, Burton H. Bluhm, Paul P. Price, R. W. Schneider, Vinson P. Doyle
Software Mentions: 1
Published: about 7 years ago
10.1128/genomeA.01049-17
Draft Genome Sequence of an Atypical Highly Virulent Rabbit Staphylococcus aureus Strain
Cited by: 0
Author(s): Zoltán Német, Ervin Albert, Tibor Nagy, Ferenc Olasz, Endre Barta, János Kiss, Ádám Dán, Krisztiàn Bányai, Katleen Hermans, Imre Biksi
Software Mentions: 1
Published: about 7 years ago
10.1128/genomeA.01151-17
Draft Genome Sequence of Salmonella enterica subsp. <i>enterica</i> Serovar Typhimurium Q1
Cited by: 2
Author(s): Inga Eichhorn, Karsten Tedin, Marcus Fulde
Software Mentions: 1
Published: about 7 years ago
10.1128/genomeA.01076-17
Draft Genome Sequence of the Wood-Degrading Ascomycete Kretzschmaria deusta DSM 104547
Cited by: 3
Author(s): Enrico Büttner, Anna Maria Gebauer, Martin Hofrichter, Christiane Liers, Harald Kellner
Software Mentions: 1
Published: about 7 years ago
10.1128/genomeA.01510-17
Draft Genome Sequence of the Sordariomycete <i>Lecythophora</i> ( <i>Coniochaeta</i> ) <i>hoffmannii</i> CBS 245.38
Cited by: 11
Author(s): Sabrina Leonhardt, Enrico Büttner, Anna Maria Gebauer, Martin Hofrichter, Harald Kellner
Software Mentions: 1
Published: almost 7 years ago
10.1128/genomeA.00037-18
Complete Genome Sequences of 11 Type Species from the Thermococcus Genus of Hyperthermophilic and Piezophilic Archaea
Cited by: 1
Author(s): Philippe Oger
Software Mentions: 1
Published: over 6 years ago
10.1128/genomeA.00301-18
Draft Genome Sequence of Burkholderia gladioli Coa14, a Bacterium with Petroleum Bioremediation Potential Isolated from Coari Lake, Amazonas, Brazil
Cited by: 4
Author(s): Eraldo Ferreira Lopes, Josemar Gurgel da Costa, Ivan Rodrigo Wolf, José Paulo de Araújo Lima, Spártaco Astolfi-Filho
Software Mentions: 1
Published: over 6 years ago
10.1128/genomeA.00317-18
Genome Sequences of RIGVIR Oncolytic Virotherapy Virus and Five Other Echovirus 7 Isolates
Cited by: 3
Author(s): Eero Hietanen, Teemu Smura, Marika Hakanen, Jira Chansaenroj, Pirjo Merilahti, Janne Nevalainen, Sunita Pandey, Satu Koskinen, Lav Tripathi, Yong Poovorawan, Juha-Pekka Pursiheimo, Petri Susi
Software Mentions: 1
Published: over 6 years ago
10.1128/genomeA.00365-18
Draft Genome Sequence of a Fungus (Fusarium tricinctum) Cultured from a Monoisolate Native to the Himalayas
Cited by: 4
Author(s): Narendra Kumar Meena, M. Vasundhara, M. Sudhakara Reddy, Prashanth Suravajhala, Upadhyayula S. Raghavender, Krishna Mohan Medicherla
Software Mentions: 1
Published: over 6 years ago
10.1128/genomeA.00511-18
Recovery of Five Complete Influenza A(H1N1)pdm09 Genome Sequences from the 2015 Influenza Outbreak in India by Metagenomic Sequencing
Cited by: 3
Author(s): Paban Kumar Dash, Chitra Pattabiraman, Kundan Tandel, Shashi Sharma, Jyoti Kumar, Shilpa Siddappa, Malali Gowda, Sudhir Krishna, Manmohan Parida
Software Mentions: 1
Published: over 6 years ago
10.1186/gb-2012-13-1-r3
A genome triplication associated with early diversification of the core eudicots
Cited by: 356
Author(s): Yuannian Jiao, Jim Leebens‐Mack, Saravanaraj Ayyampalayam, John E. Bowers, Michael R. McKain, Joel R. McNeal, Megan M Rolf, Daniel R. Ruzicka, Eric Wafula, Norman J. Wickett, Xiaolei Wu, Yong Zhang, Jun Wang, Yeting Zhang, Eric J. Carpenter, Michael K. Deyholos, Toni M. Kutchan, André S. Chanderbali, Pamela S. Soltis, Dennis Wm. Stevenson, W. Richard McCombie, J. Chris Pires, Gane Ka‐Shu Wong, Douglas E. Soltis, Claude W. dePamphilis
Software Mentions: 1
Published: almost 13 years ago
10.1186/gb-2011-12-s1-p5
Evaluating short-read sequence data from the highly redundant, novel transcriptome of Polarella glacialis
Cited by: 0
Author(s): Theodore Gibbons, Gregory T. Concepcion, Tsvetan R. Bachvaroff, Charles F. Delwiche
Software Mentions: 1
Published: almost 14 years ago
10.1186/gb-2013-14-9-r101
Reducing assembly complexity of microbial genomes with single-molecule sequencing
Cited by: 344
Author(s): Sergey Koren, Gregory P. Harhay, Timothy P. L. Smith, James L. Bono, Dayna M. Harhay, Scott D. Mcvey, Diana Radune, Nicholas H. Bergman, Adam M. Phillippy
Software Mentions: 1
Published: almost 12 years ago
10.1186/gb-2014-15-6-r78
Mapping-by-sequencing accelerates forward genetics in barley
Cited by: 120
Author(s): Martin Mascher, Matthias Jost, Joel‐Elias Kuon, Axel Himmelbach, Axel Aßfalg, Sebastian Beier, Uwe Scholz, Andreas Graner, Nils Stein
Software Mentions: 1
Published: almost 11 years ago
10.1186/s13059-015-0619-z
Deleterious effects of endocrine disruptors are corrected in the mammalian germline by epigenome reprogramming
Cited by: 113
Author(s): Khursheed Iqbal, Diana A. Tran, Arthur X. Li, Charles Warden, Angela Y. Bai, Purnima Singh, Xiwei Wu, Gerd P. Pfeifer, Piroska E. Szabó
Software Mentions: 1
Published: over 9 years ago
10.1093/gbe/evt168
Parallel Recruitment of Multiple Genes into C4 Photosynthesis
Cited by: 65
Author(s): Pascal‐Antoine Christin, Susanna Flavia Boxall, Richard I. Gregory, Erika J. Edwards, James Hartwell, Colin P. Osborne
Software Mentions: 1
Published: about 11 years ago