Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: bioconductor: MAST

https://packages.ecosyste.ms/registries/bioconductor.org/packages/MAST

Model-based Analysis of Single Cell Transcriptomics
1 version
Latest release: about 1 year ago
6 dependent packages
130,521 downloads total

Papers Mentioning MAST 668

10.1186/1471-2164-14-493
Suppression of genetic recombination in the pseudoautosomal region and at subtelomeres in mice with a hypomorphic Spo11 allele
Cited by: 19
Author(s): Fátima Smagulova, Kevin Brick, Yongmei Pu, Uttara Sengupta, R. Daniel Camerini‐Otero, Galina V. Petukhova
Software Mentions: 3
Published: over 11 years ago
10.3389/fgene.2020.633455
Dissecting the Invasion-Associated Long Non-coding RNAs Using Single-Cell RNA-Seq Data of Glioblastoma
Cited by: 4
Author(s): Bo Pang, Fei Quan, Yanyan Ping, Jing Hu, Yujia Lan, Lin Pang
Software Mentions: 3
Published: almost 4 years ago
10.1186/1471-2164-14-209
MGcV: the microbial genomic context viewer for comparative genome analysis
Cited by: 50
Author(s): Lex Overmars, Robert Kerkhoven, Roland J. Siezen, Christof Francke
Software Mentions: 3
Published: almost 12 years ago
10.3389/fgene.2020.00942
Single Cell RNA-seq Data Analysis Reveals the Potential Risk of SARS-CoV-2 Infection Among Different Respiratory System Conditions
Cited by: 7
Author(s): Qiang Zhang, Yuanyi Yue, Huiwen Tan, Yishu Liu, Zhang Yin, Li Xiao
Software Mentions: 3
Published: over 4 years ago
10.3389/fimmu.2021.651656
Single-Cell RNA Sequencing Analysis of the Immunometabolic Rewiring and Immunopathogenesis of Coronavirus Disease 2019
Cited by: 21
Author(s): Furong Qi, Wenbo Zhang, Jialu Huang, Lili Fu, Jinfang Zhao
Software Mentions: 3
Published: over 3 years ago
10.3389/fimmu.2021.639613
Single-Cell Transcriptomics and In Situ Morphological Analyses Reveal Microglia Heterogeneity Across the Nigrostriatal Pathway
Cited by: 24
Author(s): Oihane Uriarte Huarte, Dimitrios Kyriakis, Tony Heurtaux, Yolanda Pires‐Afonso, Kamil Grzyb, Rashi Halder, Manuel Buttini, Alexander Skupin, Michel Mittelbronn, Alessandro Michelucci
Software Mentions: 3
Published: over 3 years ago
10.3389/fimmu.2018.01420
Dendritic Cells Actively Limit Interleukin-10 Production Under Inflammatory Conditions via DC-SCRIPT and Dual-Specificity Phosphatase 4
Cited by: 16
Author(s): Jonas Nørskov Søndergaard, Simon J. van Heeringen, Maaike W. G. Looman, Chunling Tang, Vassilis Triantis, Pauline Louche, Eva M. Janssen-Megens, Anieta M. Sieuwerts, John W.M. Martens, Colin Logie, Hendrik G. Stunnenberg, Marleen Ansems, Gosse J. Adema
Software Mentions: 3
Published: over 6 years ago
10.3389/fimmu.2019.00863
DC Respond to Cognate T Cell Interaction in the Antigen-Challenged Lymph Node
Cited by: 16
Author(s): Caterina Curato, Biana Bernshtein, Eva Zupancič, Almut Dufner, Diego Adhemar Jaitin, Amir Giladi, Eyal David, Louise Chappell‐Maor, Dena Leshkowitz, Klaus–Peter Knobeloch, Ido Amit, Helena F. Florindo, Steffen Jung
Software Mentions: 3
Published: over 5 years ago
10.3389/fimmu.2020.00340
Enhanced Phenotype Definition for Precision Isolation of Precursor Exhausted Tumor-Infiltrating CD8 T Cells
Cited by: 24
Author(s): Amaia Martinez-Usatorre, Santiago J. Carmona, Céline Godfroid, Céline Yacoub Maroun, Sara Labiano, Pedro Romero
Software Mentions: 3
Published: over 4 years ago
10.3389/fimmu.2021.675746
Mapping T Cell Responses to Native and Neo-Islet Antigen Epitopes in at Risk and Type 1 Diabetes Subjects
Cited by: 7
Author(s): Sefina Arif, Irma Pujol‐Autonell, Yogesh Kamra, Evangeline Williams, Norkhairin Yusuf, Clara Domingo‐Vila, Yasaman Shahrabi, Emily Pollock, Leena Khatri, Mark Peakman, Timothy Tree, Anna Lorenc
Software Mentions: 3
Published: over 3 years ago
10.3389/fmicb.2020.607182
The Puzzle of Metabolite Exchange and Identification of Putative Octotrico Peptide Repeat Expression Regulators in the Nascent Photosynthetic Organelles of Paulinella chromatophora
Cited by: 12
Author(s): Linda Oberleitner, Gereon Poschmann, Luis Macorano, Stephan Schott‐Verdugo, Holger Gohlke, Kai Stühler, Eva C. M. Nowack
Software Mentions: 3
Published: almost 4 years ago
10.3390/ijms21238964
Frontiers in Dissecting and Managing Brassica Diseases: From Reference-Based RGA Candidate Identification to Building Pan-RGAomes
Cited by: 13
Author(s): Yueqi Zhang, William J. W. Thomas, Philipp E. Bayer, David Edwards, Jacqueline Batley
Software Mentions: 3
Published: almost 4 years ago
10.1186/1471-2148-5-54
Mammalian BEX, WEX and GASP genes: Coding and non-coding chimaerism sustained by gene conversion events
Cited by: 27
Author(s): Eitan Winter, Chris P. Ponting
Software Mentions: 3
Published: about 19 years ago
10.3389/fmicb.2020.02078
Delineating the Immuno-Dominant Antigenic Vaccine Peptides Against gacS-Sensor Kinase in Acinetobacter baumannii: An in silico Investigational Approach
Cited by: 10
Author(s): A. S. Smiline Girija
Software Mentions: 3
Published: about 4 years ago
10.3389/fmolb.2021.625608
P23 Acts as Functional RBP in the Macrophage Inflammation Response
Cited by: 6
Author(s): Sebastian de Vries, Vladimı́r Beneš, Isabel S. Naarmann-de Vries, Cornelia Rücklé, Kathi Zarnack, Gernot Marx, Dirk H. Ostareck, Antje Ostareck-Lederer
Software Mentions: 3
Published: over 3 years ago
10.3389/fmolb.2020.575196
Probing the Structural Dynamics of the Plasmodium falciparum Tunneling-Fold Enzyme 6-Pyruvoyl Tetrahydropterin Synthase to Reveal Allosteric Drug Targeting Sites
Cited by: 2
Author(s): Afrah Khairallah, Caroline Jane Ross, Özlem Tastan Bishop
Software Mentions: 3
Published: about 4 years ago
10.3389/fphys.2021.711645
In silico Characterization of the Heme Oxygenase 1 From Bottlenose Dolphin (Tursiops truncatus): Evidence of Changes in the Active Site and Purifying Selection
Cited by: 2
Author(s): Carlos A. Reyes-Ramos, Ramón Gaxiola-Robles, José Pablo Vázquez‐Medina, Luis Javier Ramírez-Jirano, Oscar Kurt Bitzer-Quintero, Tania Zenteno‐Savín
Software Mentions: 3
Published: over 3 years ago
10.3389/fpls.2016.01347
A Primary Sequence Analysis of the ARGONAUTE Protein Family in Plants
Cited by: 22
Author(s): Daniel Rodríguez-Leal, Amanda Castillo-Cobián, Isaac Rodríguez‐Arévalo, Jean‐Philippe Vielle‐Calzada
Software Mentions: 3
Published: about 8 years ago
10.3389/fpls.2017.00709
Genome Analysis of Conserved Dehydrin Motifs in Vascular Plants
Cited by: 44
Author(s): Ahmad Malik, Michael A. Veltri, Kelly F. Boddington, Karamjeet K. Singh, Steffen P. Graether
Software Mentions: 3
Published: over 7 years ago
10.1534/g3.116.032243
Divergent DNA Methylation Provides Insights into the Evolution of Duplicate Genes in Zebrafish
Cited by: 10
Author(s): Zaixuan Zhong, Kang Du, Yu Qian, Yong E. Zhang, Shunping He
Software Mentions: 3
Published: about 8 years ago
10.1186/gb-2009-10-12-r142
A blind deconvolution approach to high-resolution mapping of transcription factor binding sites from ChIP-seq data
Cited by: 63
Author(s): Desmond S. Lun, Ashley M. Sherrid, Brian Weiner, David R. Sherman, James E. Galagan
Software Mentions: 3
Published: almost 16 years ago
10.1186/gb-2010-11-1-r7
Genome-wide prediction of transcription factor binding sites using an integrated model
Cited by: 111
Author(s): Kyoung Jae Won, Bing Ren, Weiwei Wang
Software Mentions: 3
Published: almost 15 years ago
10.1186/gb-2014-15-1-r10
Genome-wide analysis of light-regulated alternative splicing mediated by photoreceptors in Physcomitrella patens
Cited by: 79
Author(s): Huimin Wu, Yi-shin Su, Hsiu-Chen Chen, Yurong Chen, Chia-Hung Wu, Wen-Dar Lin, Shih-Long Tu
Software Mentions: 3
Published: almost 12 years ago
10.3390/ijms22094371
Connectivity Map Analysis of a Single-Cell RNA-Sequencing -Derived Transcriptional Signature of mTOR Signaling
Cited by: 8
Author(s): Naim Al Mahi, Erik Y. Zhang, Susan G. Sherman, Jane Yu, Mario Medvedovic
Software Mentions: 3
Published: over 3 years ago
10.1186/s12862-020-01734-0
The skeletome of the red coral Corallium rubrum indicates an independent evolution of biomineralization process in octocorals
Cited by: 35
Author(s): Nathalie Le Roy, Philippe Ganot, Manuel Aranda, Denis Allemand, Sylvie Tambutté
Software Mentions: 3
Published: almost 4 years ago
10.1186/s13059-016-1077-y
A statistical approach for identifying differential distributions in single-cell RNA-seq experiments
Cited by: 210
Author(s): Keegan Korthauer, Li‐Fang Chu, Michael A. Newton, Yuan Li, James A. Thomson, Ron Stewart, Christina Kendziorski
Software Mentions: 3
Published: about 8 years ago
10.1186/s13059-017-1334-8
f-scLVM: scalable and versatile factor analysis for single-cell RNA-seq
Cited by: 102
Author(s): Florian Buettner, Naruemon Pratanwanich, Davis J. McCarthy, John C. Marioni, Oliver Stegle
Software Mentions: 3
Published: about 7 years ago
10.1186/s13059-018-1431-3
GiniClust2: a cluster-aware, weighted ensemble clustering method for cell-type detection
Cited by: 53
Author(s): Daphne Tsoucas, Guo‐Cheng Yuan
Software Mentions: 3
Published: over 6 years ago
10.1186/1471-2105-13-256
A scalable method for identifying frequent subtrees in sets of large phylogenetic trees
Cited by: 5
Author(s): Avinash Ramu, Tamer Kahveci, J. Gordon Burleigh
Software Mentions: 3
Published: about 12 years ago
10.1186/1471-2105-8-385
Discriminative motif discovery in DNA and protein sequences using the DEME algorithm
Cited by: 94
Author(s): Emma Redhead, Timothy L. Bailey
Software Mentions: 3
Published: about 17 years ago
10.1093/gbe/evw094
Pooled Enrichment Sequencing Identifies Diversity and Evolutionary Pressures at NLR Resistance Genes within a Wild Tomato Population
Cited by: 47
Author(s): Remco Stam, Daniela Scheikl, Aurélien Tellier
Software Mentions: 3
Published: over 8 years ago
10.1093/gbe/evaa038
The Evolution History of Fe–S Cluster A-Type Assembly Protein Reveals Multiple Gene Duplication Events and Essential Protein Motifs
Cited by: 3
Author(s): Hui‐Meng Lu, Jing-Di Li, Yu-Dan Zhang, Xiaoli Lü, Chang Xu, Yuan Huang, Michael Gribskov
Software Mentions: 3
Published: over 4 years ago
10.1186/1471-2105-7-S4-S16
Identification of new members of hydrophobin family using primary structure analysis
Cited by: 8
Author(s): Kuan Yang, Youping Deng, Chaoyang Zhang, Mohamed O. Elasri
Software Mentions: 3
Published: almost 18 years ago
10.3390/jcm10050960
Multiple Allergen Simultaneous Test-Immunoblot Assay for Immunoglobulin E Detection in Patients with Isolated Allergic Conjunctivitis
Cited by: 1
Author(s): Jung Yeob Han, Hun Lee, J. N. Chung, Young Jun Kim, Jae Yong Kim, Hungwon Tchah
Software Mentions: 3
Published: over 3 years ago
10.3390/jcm10143183
Review of Rhinitis: Classification, Types, Pathophysiology
Cited by: 37
Author(s): Georgia A Liva, Alexander D. Karatzanis, E Prokopakis
Software Mentions: 3
Published: over 3 years ago
10.1186/1471-2105-7-280
Integrated biclustering of heterogeneous genome-wide datasets for the inference of global regulatory networks
Cited by: 240
Author(s): David J Reiss, Nitin S. Baliga, Richard Bonneau
Software Mentions: 3
Published: over 18 years ago
10.1038/sdata.2016.54
High-throughput ab-initio dilute solute diffusion database
Cited by: 91
Author(s): Haonan Wu, Tam Mayeshiba, Dane Morgan
Software Mentions: 3
Published: over 8 years ago
10.1007/s00415-016-8170-8
Screening tests for aphasia in patients with stroke: a systematic review
Cited by: 66
Author(s): Hanane El Hachioui, Evy Visch-Brink, Lonneke M. L. de Lau, Mieke W. M. E. van de Sandt-Koenderman, Femke Nouwens, Peter J. Koudstaal, Diederik W.J. Dippel
Software Mentions: 3
Published: over 8 years ago
10.1186/1471-2105-13-S17-S26
Phylogenetic reconstruction in the Order Nymphaeales: ITS2 secondary structure analysis and in silico testing of maturase k (matK) as a potential marker for DNA bar coding
Cited by: 15
Author(s): Devendra Kumar Biswal, Manish Debnath, Sunil Kumar, Pramod Tandon
Software Mentions: 3
Published: almost 12 years ago
10.1038/srep27978
From multiple pathogenicity islands to a unique organized pathogenicity archipelago
Cited by: 12
Author(s): Costas Bouyioukos, Sylvie Reverchon, François Képès
Software Mentions: 3
Published: over 8 years ago
10.1038/srep28995
Characterization and target genes of nine human PRD-like homeobox domain genes expressed exclusively in early embryos
Cited by: 30
Author(s): Elo Madissoon, Eeva-Mari Jouhilahti, Liselotte Vesterlund, Virpi Töhönen, Kaarel Krjutškov, Sophie Petropoulos, Elisabet Einarsdottir, Sten Linnarsson, Fredrik Lanner, Robert Månsson, Outi Hovatta, Thomas R. Bürglin, Shintaro Katayama, Juha Kere
Software Mentions: 3
Published: over 8 years ago
10.1038/srep41498
Accessing the genomic information of unculturable oceanic picoeukaryotes by combining multiple single cells
Cited by: 46
Author(s): Jean‐François Mangot, Ramiro Logares, Pablo Sánchez, Fran Latorre, Yoann Seeleuthner, Samuel Mondy, Michael E. Sieracki, Olivier Jaillon, Patrick Wincker, Colomban de Vargas, Ramón Massana
Software Mentions: 3
Published: almost 8 years ago
10.1038/s41598-017-08842-w
Exploring Leishmania secretory proteins to design B and T cell multi-epitope subunit vaccine using immunoinformatics approach
Cited by: 226
Author(s): Nazia Khatoon, Rajan Kumar Pandey, Vijay Kumar Prajapati
Software Mentions: 3
Published: over 7 years ago
10.1038/s41598-017-18528-y
Mycobacterium tuberculosis Exploits a Molecular Off Switch of the Immune System for Intracellular Survival
Cited by: 30
Author(s): Ulrich von Both, Maurice Berk, Paul‐Michael Agapow, J. D. Wright, Anna Git, Melissa Shea Hamilton, Gregory M. Goldgof, Nazneen Siddiqui, Evangelos Bellos, Victoria Wright, Lachlan Coin, Sandra M. Newton, Michael Levin
Software Mentions: 3
Published: almost 7 years ago
10.1038/s41598-019-38906-y
Single Cell Profiling Reveals PTEN Overexpression in Influenza-Specific B cells in Aging HIV-infected individuals on Anti-retroviral Therapy
Cited by: 14
Author(s): Lesley R. de Armas, Suresh Pallikkuth, Pan Li, Stefano Rinaldi, Nicola Cotugno, Sarah F. Andrews, Rajendra Pahwa, Adrian B. McDermott, Paolo Palma, Savita Pahwa
Software Mentions: 3
Published: almost 6 years ago
10.1038/s41598-019-40955-2
Draft genome of the brown alga, Nemacystus decipiens, Onna-1 strain: Fusion of genes involved in the sulfated fucan biosynthesis pathway
Cited by: 28
Author(s): Koki Nishitsuji, Asuka Arimoto, Yoshimi Higa, Munekazu Mekaru, Mayumi Kawamitsu, Noriyuki Satoh, Eiichi Shoguchi
Software Mentions: 3
Published: over 5 years ago
10.1038/s41598-021-96863-x
Identification of vaccine targets in pathogens and design of a vaccine using computational approaches
Cited by: 30
Author(s): Kamal Rawal, Robin Sinha, Bilal Ahmed Abbasi, Amit Chaudhary, Swarsat Kaushik Nath, Priya Kumari, P. Preeti, Devansh Saraf, Shachee Singh, Kartik Mishra, Pranjay Gupta, Astha Mishra, Trapti Sharma, Sandeep K. Gupta, Prashant Kumar Singh, Shriya Sood, Preeti Subramani, Aman Dubey, Ulrich Strych, Peter J. Hotez, María Elena Bottazzi
Software Mentions: 3
Published: about 3 years ago
10.3390/s18020628
A Model-Driven Co-Design Framework for Fusing Control and Scheduling Viewpoints
Cited by: 5
Author(s): Sakthivel Manikandan Sundharam, Nicolas Navet, Sebastian Altmeyer, Lionel Havet
Software Mentions: 3
Published: almost 7 years ago
10.1007/s11625-020-00885-9
Grasping at digitalisation: turning imagination into fact in the sugarcane farming community
Cited by: 13
Author(s): Simon Fielke, Bruce Taylor, Emma Jakku, Martijn Mooij, Cara Stitzlein, Aysha Fleming, Peter J. Thorburn, A. J. F. Webster, Aaron M. Davis, María P. Vilas
Software Mentions: 3
Published: almost 4 years ago
10.1186/1742-4682-7-18
ChIP-PaM: an algorithm to identify protein-DNA interaction using ChIP-Seq data
Cited by: 20
Author(s): Song Wu, Jianmin Wang, Wei Zhao, Stanley Pounds, Cheng Te Cheng
Software Mentions: 3
Published: over 14 years ago
10.1038/s41398-019-0586-3
Genome-wide association study of alcohol dependence in male Han Chinese and cross-ethnic polygenic risk score comparison
Cited by: 18
Author(s): Yan Sun, Suhua Chang, Fan Wang, Hongqiang Sun, Zhaojun Ni, Weihua Yue, Hang Zhou, Joel Gelernter, Robert T. Malison, Rasmon Kalayasiri, Ping Wu, Lin Lü, Jie Shi
Software Mentions: 3
Published: about 5 years ago
10.1186/s13063-017-2389-2
Challenges in implementing model-based phase I designs in a grant-funded clinical trials unit
Cited by: 5
Author(s): Eleni Frangou, Jane Holmes, Sharon Love, Naomi McGregor, M. Hawkins
Software Mentions: 3
Published: almost 7 years ago
10.1192/pb.bp.114.049734
Alcohol screening for older adults in an acute general hospital: FAST <i>v.</i> MAST-G assessments
Cited by: 7
Author(s): Rachel Knightly, George Tadros, Jaydev Sharma, Peter Duffield, Emma Carnall, Jacqui Fisher, Shaza Salman
Software Mentions: 3
Published: over 8 years ago
10.1128/mBio.00182-20
Differential Impacts on Host Transcription by ROP and GRA Effectors from the Intracellular Parasite Toxoplasma gondii
Cited by: 22
Author(s): Suchita Rastogi, Yuan Xue, Stephen R. Quake, John C. Boothroyd
Software Mentions: 3
Published: over 4 years ago
10.1128/mSphere.00119-20
Molecular Mechanisms of Phosphate Stress Activation of Pseudomonas aeruginosa Quorum Sensing Systems
Cited by: 36
Author(s): Xianmin Meng, Stephen Dela Ahator, Lian-Hui Zhang
Software Mentions: 3
Published: over 4 years ago
10.1128/mSphere.00694-20
Strain Structure and Dynamics Revealed by Targeted Deep Sequencing of the Honey Bee Gut Microbiome
Cited by: 15
Author(s): Louis‐Marie Bobay, Emily F. Wissel, Kasie Raymann
Software Mentions: 3
Published: about 4 years ago
10.1128/mSystems.00444-19
Diatoms Are Selective Segregators in Global Ocean Planktonic Communities
Cited by: 32
Author(s): Flora Vincent, Chris Bowler
Software Mentions: 3
Published: almost 5 years ago
10.1007/s10509-018-3480-1
A study of pulsation &amp; rotation in a sample of A-K type stars in the Kepler field
Cited by: 9
Author(s): S. Chowdhury, Santosh Joshi, C. A. Engelbrecht, P. De Cat, Y. C. Joshi, K. T. Paul
Software Mentions: 3
Published: almost 6 years ago
10.1161/HYPERTENSIONAHA.120.15922
Downregulation of M Current Is Coupled to Membrane Excitability in Sympathetic Neurons Before the Onset of Hypertension
Cited by: 18
Author(s): Harvey Davis, Neil Herring, David J. Paterson
Software Mentions: 3
Published: almost 4 years ago
10.2196/medinform.5185
Evaluating Health Information Systems Using Ontologies
Cited by: 9
Author(s): Shahryar Eivazzadeh, Peter Anderberg, Tobias Larsson, Samuel Fricker, Johan Berglund
Software Mentions: 3
Published: over 8 years ago
10.3390/ijerph18063156
EmERGE mHealth Platform: Implementation and Technical Evaluation of a Digital Supported Pathway of Care for Medically Stable HIV
Cited by: 4
Author(s): Francisco J. Gárate, Paloma Chausa, Jennifer Whetham, Christopher Iain Jones, Felipe García, Cesar A. Cáceres, Patricia Sánchez-González, Edward Wallitt, Enrique J. Gómez, on behalf of the EmERGE Consortium
Software Mentions: 3
Published: over 3 years ago
10.2196/10098
Cocreated Smartphone App to Improve the Quality of Life of Adolescents and Young Adults with Cancer (Kræftværket): Protocol for a Quantitative and Qualitative Evaluation
Cited by: 26
Author(s): Abbey Elsbernd, Maiken Hjerming, Camilla Visler, Lisa Lyngsie Hjalgrim, Carsten Utoft Niemann, Kirsten A Boisen, Helle Pappot
Software Mentions: 3
Published: over 6 years ago
10.1093/jme/tjaa242
The Effect of Sound Lure Frequency and Habitat Type on Male Aedes albopictus (Diptera: Culicidae) Capture Rates With the Male Aedes Sound Trap
Cited by: 7
Author(s): Tom Swan, Tanya L. Russell, Thomas R. Burkot, Jianyi Liu, Scott A. Ritchie, Kyran M. Staunton
Software Mentions: 3
Published: about 4 years ago
10.7554/eLife.51271
Anatomical and single-cell transcriptional profiling of the murine habenular complex
Cited by: 54
Author(s): Michael L. Wallace, Kee Wui Huang, Daniel Hochbaum, Minsuk Hyun, Gianna Radeljic, Bernardo L. Sabatini
Software Mentions: 3
Published: almost 5 years ago
10.1186/s12879-017-2940-5
Molecular epidemiology of Neisseria gonorrhoeae strains circulating in Indonesia using multi-locus variable number tandem repeat analysis (MLVA) and Neisseria gonorrhoeae multi-antigen sequence typing (NG-MAST) techniques
Cited by: 1
Author(s): I Putu Yuda Hananta, Alje P. van Dam, Maarten F. Schim van der Loeff, Mirjam Dierdorp, Carolien M. Wind, Hardyanto Soebono, Henry J. C. de Vries, Sylvia M. Bruisten
Software Mentions: 3
Published: almost 7 years ago
10.1186/s12911-019-0975-9
Standards as applied in reality: a case study on the translation of standards in eHealth evaluation practice
Cited by: 1
Author(s): Monika Jurkeviciute
Software Mentions: 3
Published: almost 5 years ago
10.1186/s12870-020-02771-z
Genome-wide identification and expression analysis of the CLC gene family in pomegranate (Punica granatum) reveals its roles in salt resistance
Cited by: 10
Author(s): Cuiyu Liu, Yujie Zhao, Xueqing Zhao, Jianmei Dong, Zhaohe Yuan
Software Mentions: 3
Published: almost 4 years ago
10.1186/1756-0500-2-142
Network module detection: Affinity search technique with the multi-node topological overlap measure
Cited by: 44
Author(s): Li Ai, Steve Horvath
Software Mentions: 3
Published: almost 16 years ago
10.1186/1472-6807-11-16
Molecular modeling and in silico characterization of Mycobacterium tuberculosis TlyA: Possible misannotation of this tubercle bacilli-hemolysin
Cited by: 27
Author(s): Nelson E. Arenas, Luz Mary Salazar, Carlos Y. Soto, Carolina Vizcaíno, Manuel Elkín Patarroyo, Arley Gómez
Software Mentions: 3
Published: over 13 years ago
10.1186/s12913-020-05106-8
Measuring the effectiveness of digital nursing technologies: development of a comprehensive digital nursing technology outcome framework based on a scoping review
Cited by: 19
Author(s): Tobias Krick, Kai Hüter, Kathrin Seibert, Dominik Domhoff, Karin Wolf‐Ostermann
Software Mentions: 3
Published: over 4 years ago
10.1007/s00395-019-0744-z
Mono- and multi-nucleated ventricular cardiomyocytes constitute a transcriptionally homogenous cell population
Cited by: 49
Author(s): Michail Yekelchyk, Stefan Guenther, Jens Preussner, Thomas Braun
Software Mentions: 3
Published: over 5 years ago
10.1111/tme.12667
Pre‐hospital transfusion of red blood cells. Part 1: A scoping review of current practice and transfusion triggers
Cited by: 17
Author(s): Elisabeth C van Turenhout, Sebastiaan M. Bossers, Stephan A. Loer, Georgios F. Giannakópoulos, Lothar A. Schwarte, Patrick Schober
Software Mentions: 2
Published: almost 5 years ago
10.1007/s10096-014-2297-2
Analysis of Bordetella pertussis clinical isolates circulating in European countries during the period 1998–2012
Cited by: 75
Author(s): Marjolein van Gent, C.J. Heuvelman, H. G. van der Heide, Hans O. Hallander, Abdolreza Advani, Nicole Guiso, Carl Heinz Wirsing von König, Didrik Frimann Vestrheim, Tine Dalby, Norman K. Fry, Denis Piérard, Liselot Detemmerman, Jana Zavadilová, Kateřina Fabiánová, Catriona Logan, Adele Habington, Margaret M. Byrne, Anna Lutyńska, Ewa Mosiej, Carmen Peláz, Kirsi Gröndahl-Yli-Hannuksela, Alex‐Mikael Barkoff, Jussi Mertsola, A. Economopoulou, Qiushui He, Frits R. Mooi
Software Mentions: 2
Published: almost 10 years ago
10.2807/1560-7917.ES.2020.25.41.1900648
Molecular epidemiological typing of Neisseria gonorrhoeae isolates identifies a novel association between genogroup G10557 (G7072) and decreased susceptibility to cefixime, Germany, 2014 to 2017
Cited by: 3
Author(s): Sebastian Banhart, Klaus Jansen, Susanne Buder, Thalea Tamminga, Sébastien Calvignac‐Spencer, Tanja Pilz, Andréa Martini, Sandra Dudareva, Sergejs Nikisins, Kerstin Dehmel, Gabriele Zuelsdorf, Eva Guhl, Ingeborg Graeber, Peter K. Kohl, Magnus Unemo, Viviane Bremer, Dagmar Heuer
Software Mentions: 2
Published: about 4 years ago
10.1186/s12864-020-07306-2
Transcriptome analysis reveals modulation of the STAT family in PEDV-infected IPEC-J2 cells
Cited by: 11
Author(s): Zhengzheng Hu, Yuchen Li, Huarui Du, Jingyao Ren, Xianrui Zheng, Kejian Wei, Jianfeng Liu
Software Mentions: 2
Published: almost 4 years ago
10.1186/s12864-019-5780-4
Genome-wide comparison reveals divergence of cassava and rubber aquaporin family genes after the recent whole-genome duplication
Cited by: 15
Author(s): Zhi Zou, Jianghua Yang
Software Mentions: 2
Published: over 5 years ago
10.1186/s12887-018-1178-8
Is there an association between vitamin D deficiency and adenotonsillar hypertrophy in children with sleep-disordered breathing?
Cited by: 16
Author(s): Ji-Hyeon Shin, Byung-Guk Kim, Soo Whan Kim, Sung Won Kim, Hojung Kim
Software Mentions: 2
Published: over 6 years ago
10.1186/s12864-016-2635-0
TNL genes in peach: insights into the post-LRR domain
Cited by: 27
Author(s): Cyril Van Ghelder, Daniel Esmenjaud
Software Mentions: 2
Published: over 8 years ago
10.1111/1574-6968.12196
<i>bkaR</i>is a TetR-type repressor that controls an operon associated with branched-chain keto-acid metabolism in<i>Mycobacteria</i>
Cited by: 14
Author(s): Ricardo Balhana, Sade N. Swanston, S. B. Coade, Mike Withers, Mahmudul Hasan Sikder, Neil G. Stoker, Sharon L. Kendall
Software Mentions: 2
Published: over 11 years ago
10.3389/fbioe.2020.645520
prPred: A Predictor to Identify Plant Resistance Proteins by Incorporating k-Spaced Amino Acid (Group) Pairs
Cited by: 6
Author(s): Yansu Wang, Pingping Wang, Yingjie Guo, Shan Huang, Yu Chen, Lei Xu
Software Mentions: 2
Published: almost 4 years ago
10.1186/s13007-016-0126-6
ExactSearch: a web-based plant motif search tool
Cited by: 6
Author(s): T.D.C.P. Gunasekara, Avinash Subramanian, Janaki Venkata Ram Kumar Avvari, Bin Li, Chen Su, Hairong Wei
Software Mentions: 2
Published: over 8 years ago
10.1186/1746-4811-4-17
Identification of a cis-regulatory element by transient analysis of co-ordinately regulated genes
Cited by: 72
Author(s): Andrew P. Dare, Robert J. Schaffer, Kui Lin‐Wang, Andrew C. Allan, Roger P. Hellens
Software Mentions: 2
Published: almost 17 years ago
10.1098/rstb.2013.0509
Systematic identification of 3′-UTR regulatory elements in activity-dependent mRNA stability in hippocampal neurons
Cited by: 32
Author(s): Jeffrey K. Cohen, Philip R. Lee, R. Douglas Fields
Software Mentions: 2
Published: about 10 years ago
10.1038/s41398-021-01374-y
Imaging beta-amyloid (Aβ) burden in the brains of middle-aged individuals with alcohol-use disorders: a [11C]PIB PET study
Cited by: 0
Author(s): Margaret Flanigan, Sarah K Royse, David P. Cenkner, Katelyn M. Kozinski, Clara Stoughton, Michael L. Himes, Davneet Minhas, Brian J. Lopresti, Meryl A. Butters, Rajesh Narendran
Software Mentions: 2
Published: over 3 years ago
10.3389/fcimb.2018.00401
Iron and Virulence in Stenotrophomonas Maltophilia: All We Know So Far
Cited by: 25
Author(s): Viveka Kalidasan, Narcisse Joseph, Suresh Kumar, Rukman Awang Hamat, Vasantha Kumari Neela
Software Mentions: 2
Published: about 6 years ago
10.1155/2021/5574789
In Silico Structural, Functional, and Phylogenetic Analysis of Cytochrome (CYPD) Protein Family
Cited by: 9
Author(s): Hafiz Ishfaq Ahmad, Gulnaz Afzal, Adil Jamal, Shumaila Kiran, Mueen Alam Khan, Khalid Mehmood, Zahid Kamran, Irfan Ahmed, Shakeel Ahmad, Asmar Ahmad, Javed Hussain, Sadaf Almas
Software Mentions: 2
Published: over 3 years ago
10.1128/mBio.00737-19
Nuclear Factor Y (NF-Y) Modulates Encystation in <i>Entamoeba</i> via Stage-Specific Expression of the NF-YB and NF-YC Subunits
Cited by: 11
Author(s): Dipak Manna, Upinder Singh
Software Mentions: 2
Published: over 5 years ago
10.1186/1471-2229-14-9
Conserved CO-FT regulons contribute to the photoperiod flowering control in soybean
Cited by: 66
Author(s): Chengming Fan, Ruibo Hu, Xiaomei Zhang, Xu Wang, Wenjing Zhang, Qingzhe Zhang, Jianchao Ma, Yong-Fu Fu
Software Mentions: 2
Published: almost 11 years ago
10.1098/rsta.2017.0432
The European roadmap towards fusion electricity
Cited by: 40
Author(s): A. J. H. Donné
Software Mentions: 2
Published: almost 6 years ago
10.1186/s12870-017-1056-9
Prediction and analysis of three gene families related to leaf rust (Puccinia triticina) resistance in wheat (Triticum aestivum L.)
Cited by: 12
Author(s): Fred Y. Peng, Rong‐Cai Yang
Software Mentions: 2
Published: over 7 years ago
10.1186/1471-2164-12-S2-S10
Correlating CpG islands, motifs, and sequence variants in human chromosome 21
Cited by: 6
Author(s): Leah Spontaneo, Nick Cercone
Software Mentions: 2
Published: almost 14 years ago
10.1186/1471-2164-14-659
Male-specific Fruitless isoforms have different regulatory roles conferred by distinct zinc finger DNA binding domains
Cited by: 59
Author(s): Justin E. Dalton, Justin M. Fear, Simon Knott, Bruce S. Baker, Lauren M. McIntyre, Michelle N. Arbeitman
Software Mentions: 2
Published: about 11 years ago
10.3390/ijms140816901
Bioinformatic Prediction of Gene Functions Regulated by Quorum Sensing in the Bioleaching Bacterium Acidithiobacillus ferrooxidans
Cited by: 23
Author(s): Alvaro Banderas, Nicolás Guiliani
Software Mentions: 2
Published: over 11 years ago
10.3390/ijms18122768
Genome-Wide Identification, Evolutionary and Expression Analyses of the GALACTINOL SYNTHASE Gene Family in Rapeseed and Tobacco
Cited by: 22
Author(s): Yonghai Fan, Mengna Yu, Miao Liu, Rui Zhang, Wei Sun, Mingchao Qian, Huichun Duan, Wei Chang, Jinqi Ma, Cunmin Qu, Kai Zhang, Bo Lei, Kun Lu
Software Mentions: 2
Published: almost 7 years ago
10.1007/s10509-018-3277-2
New UV-source catalogs, UV spectral database, UV variables and science tools from the GALEX surveys
Cited by: 7
Author(s): Luciana Bianchi, Alexander de la Vega, B. Shiao, R. C. Bohlin
Software Mentions: 2
Published: over 6 years ago
10.1098/rsta.2017.0436
UKAEA capabilities to address the challenges on the path to delivering fusion power
Cited by: 13
Author(s): I. T. Chapman, A.W. Morris
Software Mentions: 2
Published: almost 6 years ago
10.3389/fgene.2020.00469
Wheat Encodes Small, Secreted Proteins That Contribute to Resistance to Septoria Tritici Blotch
Cited by: 11
Author(s): Binbin Zhou, Harriet R. Benbow, Ciarán J. Brennan, Chanemougasoundharam Arunachalam, Sujit Jung Karki, Ewen Mullins, Angela Feechan, John R. Burke, Fiona M. Doohan
Software Mentions: 2
Published: over 4 years ago
10.18632/aging.103574
Prognostic validation and treatment decision making of the 8th edition of the American Joint Committee on Cancer pathological staging system for elderly women with early-stage breast cancer
Cited by: 2
Author(s): San‐Gang Wu, Jimin Shi, Wen Zhang, Jun Wang, Chen-Lu Lian, Jian Lei, Hua Li, Juan Zhou, Zhen-Yu He
Software Mentions: 2
Published: over 4 years ago
10.1186/1471-2229-7-59
Genome-wide analysis of Aux/IAA and ARF gene families in Populus trichocarpa
Cited by: 211
Author(s): Udaya C. Kalluri, Stephen P. DiFazio, Amy M. Brunner, Gerald A. Tuskan
Software Mentions: 2
Published: almost 18 years ago
10.3389/fnhum.2018.00513
Disrupted Brain Network Efficiency and Decreased Functional Connectivity in Multi-sensory Modality Regions in Male Patients With Alcohol Use Disorder
Cited by: 23
Author(s): Yaqi Wang, Yilin Zhao, Hanxiang Nie, Changsheng Liu, Jun Chen
Software Mentions: 2
Published: almost 6 years ago