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Projects: bioconductor: HiCcompare

https://packages.ecosyste.ms/registries/bioconductor.org/packages/HiCcompare

HiCcompare: Joint normalization and comparative analysis of multiple Hi-C datasets
1 version
Latest release: over 2 years ago
3 dependent packages
15,871 downloads total

Enhanced Analysis
Educational Contributors: stansfieldjc@vcu.edu jennifer.wokaty@sph.cuny.edu cresswellkg@vcu.edu
Repository Activity:
Repository Owner: Dozmorov Lab (organization)
Genomics, bionformatics, computational biology, 3D genome, Hi-C Academic
README Analysis: DOI Found
Science Score: 100/100
Starting Score: 100 points
Bonuses:
  • +60 Educational commit emails
    3 contributors with educational email addresses
  • +20 Academic repository owner
    Repository owned by academic institution
  • +15 Institutional repository owner
    Repository owned by research institution
  • +14 Science terms in README
    7 scientific terms found in README
  • +30 DOI references
    3 DOI references found in README
Penalties:
  • -25 Non-science indicators
    1 non-scientific terms found
Very Likely Science (100)

Papers Mentioning HiCcompare 4

10.1186/s12859-018-2288-x
HiCcompare: an R-package for joint normalization and comparison of HI-C datasets
Cited by: 94
Author(s): John C. Stansfield, Kellen Garrison Cresswell, Vladimir I. Vladimirov, Mikhail G. Dozmorov
Software Mentions: 4
Published: almost 8 years ago
10.1186/s12859-021-04113-8
Deciphering hierarchical organization of topologically associated domains through change-point testing
Cited by: 11
Author(s): Haipeng Xing, Yingru Wu, Michael Q. Zhang, Yong Chen
Software Mentions: 3
Published: about 5 years ago
10.1093/bioinformatics/btab173
BART3D: inferring transcriptional regulators associated with differential chromatin interactions from Hi-C data
Cited by: 6
Author(s): Zhenjia Wang, Yifan Zhang, Chongzhi Zang
Software Mentions: 3
Published: about 5 years ago
10.1093/gigascience/giaa009
De novo genome assembly and Hi-C analysis reveal an association between chromatin architecture alterations and sex differentiation in the woody plant Jatropha curcas
Cited by: 15
Author(s): Maosheng Chen, Longjian Niu, Miaomiao Zhao, Chuan-Jia Xu, Bang-Zhen Pan, Qi Fu, Yongfu Tao, Hua He, Chaoqi Hou, Zeng-Fu Xu
Software Mentions: 3
Published: over 6 years ago