bioconductor: Gviz | Projects | Ecosyste.ms: Papers

10.15252/msb.20156198

Single‐cell polyadenylation site mapping reveals 3′ isoform choice variability
Cited by: 54
Author(s): Lars Velten, Simon Anders, Aleksandra Pękowska, Aino I Järvelin, Wolfgang Huber, Vicent Pelechano, Lars M. Steinmetz
Software Mentions: 3
Published: over 9 years ago

10.3390/ijms21218383

Trans-Ancestral Fine-Mapping and Epigenetic Annotation as Tools to Delineate Functionally Relevant Risk Alleles at IKZF1 and IKZF3 in Systemic Lupus Erythematosus
Cited by: 6
Author(s): Timothy J. Vyse, Deborah S. Cunninghame Graham
Software Mentions: 3
Published: about 4 years ago

10.1371/journal.pone.0140077

GATA1 and PU.1 Bind to Ribosomal Protein Genes in Erythroid Cells: Implications for Ribosomopathies
Cited by: 14
Author(s): Elsa P. Amanatiadou, Giorgio L. Papadopoulos, John Strouboulis, Ioannis S. Vizirianakis
Software Mentions: 3
Published: about 9 years ago

10.1371/journal.ppat.1008666

In vitro and in vivo characterization of a recombinant rhesus cytomegalovirus containing a complete genome
Cited by: 19
Author(s): Husam Taher, Eisa Mahyari, Craig N. Kreklywich, Luke S. Uebelhoer, Matthew R. McArdle, Matilda J. Moström, Amruta Bhusari, Michael Nekorchuk, E Xiaofei, Travis Whitmer, Elizabeth A. Scheef, Lesli M. Sprehe, Dawn Roberts, Colette M. Hughes, Kerianne A. Jackson, Andrea N. Selseth, Abigail B. Ventura, Hillary C. Cleveland-Rubeor, Yujuan Yue, Kimberli A. Schmidt, Jason Shao, Paul T. Edlefsen, Jeremy Smedley, Timothy F. Kowalik, Richard J. Stanton, Michael K. Axthelm, Jacob D. Estes, Scott G. Hansen, Amitinder Kaur, Peter A. Barry, Benjamin N. Bimber, Louis J. Picker, Daniel N. Streblow, Klaus Früh, Daniel Malouli
Software Mentions: 3
Published: almost 4 years ago

10.1186/s13058-020-01273-y

Tumor sequencing is useful to refine the analysis of germline variants in unexplained high-risk breast cancer families
Cited by: 6
Author(s): Cédric Van Marcke, Raphaël Helaers, Anne De Leener, Mariam Ahmad, Céline A Schoonjans, Jérôme Ambroise, Christine Galant, P. Delrée, Françoise Rothé, Isabelle Bar, Elsa Khoury, Pascal Brouillard, Jean-Luc Canon, Peter Vuylsteke, Jean‐Pascal Machiels, Martine Berlière, Nisha Limaye, Miikka Vikkula, François P. Duhoux
Software Mentions: 2
Published: over 4 years ago

10.1186/s12864-019-5611-7

Reprogramming histone modification patterns to coordinate gene expression in early zebrafish embryos
Cited by: 24
Author(s): Wei Zhu, Xiaocui Xu, Xinxin Wang, Jiang Liu
Software Mentions: 2
Published: over 5 years ago

10.1186/s12864-020-06803-8

Replication origin location might contribute to genetic variability in Trypanosoma cruzi
Cited by: 7
Author(s): Christiane B. de Araujo, Júlia Pinheiro Chagas da Cunha, Davi Toshio Inada, Jeziel D. Damasceno, Alex Ranieri Jerônimo Lima, Priscila Mazzocchi Hiraiwa, Catarina A. Marques, Evonnildo Costa Gonçalves, Milton Yutaka Nishiyama-Jr, Richard McCulloch, Maria Carolina Elias
Software Mentions: 2
Published: over 4 years ago

10.7554/eLife.58030

Genome duplication in Leishmania major relies on persistent subtelomeric DNA replication
Cited by: 15
Author(s): Jeziel D. Damasceno, Catarina A. Marques, Dario Beraldi, Kathryn Crouch, Craig Lapsley, Ricardo Obonaga, Luíz Ricardo Orsini Tosi, Richard McCulloch
Software Mentions: 2
Published: about 4 years ago

10.3389/fendo.2021.713961

Neuromedins NMU and NMS: An Updated Overview of Their Functions
Cited by: 18
Author(s): Ludwik K. Malendowicz, Marcin Ruciński
Software Mentions: 2
Published: over 3 years ago

10.3389/fpls.2020.01288

Structure and Expression of Bud Dormancy-Associated MADS-Box Genes (DAM) in European Plum
Cited by: 23
Author(s): Carles Quesada-Traver, Brenda Guerrero, M. L. Badenes, Javier Rodrigo, Gabino Ríos, Alba Lloret
Software Mentions: 2
Published: over 4 years ago

10.1038/srep13107

Age-related profiling of DNA methylation in CD8+ T cells reveals changes in immune response and transcriptional regulator genes
Cited by: 122
Author(s): Liina Tserel, Raivo Kolde, Maia Limbach, Konstantin Tretyakov, Silva Kasela, Kai Kisand, Mario Saare, Jaak Vilo, Andres Metspalu, Lili Milani, Pärt Peterson
Software Mentions: 2
Published: over 9 years ago

10.3390/genes11010096

Identification of a Novel Imprinted Transcript in the Porcine GNAS Complex Locus Using Methylome and Transcriptome of Parthenogenetic Fetuses
Cited by: 8
Author(s): Jinsoo Ahn, Huiguang Wu, Joonbum Lee, In-Sul Hwang, Debing Yu, Jin-Seop Ahn, Jeong-Woong Lee, Seongsoo Hwang, Kichoon Lee
Software Mentions: 2
Published: almost 5 years ago

10.1093/gigascience/giy079

Clinker: visualizing fusion genes detected in RNA-seq data
Cited by: 16
Author(s): Breon Schmidt, N. Davidson, Anthony D. K. Hawkins, Ray C. Bartolo, Ian J. Majewski, Paul G. Ekert, Alicia Oshlack
Software Mentions: 2
Published: over 6 years ago

10.1534/g3.120.401425

The Landscape of Genomic Imprinting at the Porcine <i>SGCE</i>/<i>PEG10</i> Locus from Methylome and Transcriptome of Parthenogenetic Embryos
Cited by: 5
Author(s): Jinsoo Ahn, In-Sul Hwang, Mi-Ryung Park, In-Cheol Cho, Seongsoo Hwang, Kichoon Lee
Software Mentions: 2
Published: about 4 years ago

10.18632/oncotarget.27083

CpG promoter hypo-methylation and up-regulation of microRNA-190b in hormone receptor-positive breast cancer
Cited by: 2
Author(s): Elisabet Alexandra Frick, Thorkell Gudjonsson, Jórunn E. Eyfjörd, Jón Gunnlaugur Jónasson, Laufey Tryggvadóttír, Olafur A. Stefansson, Stefan Sigurdsson
Software Mentions: 2
Published: over 5 years ago

10.3389/fpls.2020.593692

G4 Structures in Control of Replication and Transcription of rRNA Genes
Cited by: 12
Author(s): Kateřina Havlová, Jiřı́ Fajkus
Software Mentions: 2
Published: about 4 years ago

10.1038/s41598-018-26112-1

Genome-wide haplotype association analysis of primary biliary cholangitis risk in Japanese
Cited by: 5
Author(s): Cindy Im, Yadav Sapkota, Wonjong Moon, M. Kawashima, Minoru Nakamura, Katsushi Tokunaga, Yutaka Yasui
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0128517

Impacts of Chromatin States and Long-Range Genomic Segments on Aging and DNA Methylation
Cited by: 25
Author(s): Dan Sun, Soojin V. Yi
Software Mentions: 2
Published: over 9 years ago

10.1186/s13029-016-0052-z

A flexible tool to plot a genomic map for single nucleotide polymorphisms
Cited by: 1
Author(s): Fuquan Zhang
Software Mentions: 2
Published: over 8 years ago

10.3390/v12111264

A Novel Anphevirus in Aedes albopictus Mosquitoes Is Distributed Worldwide and Interacts with the Host RNA Interference Pathway
Cited by: 8
Author(s): Mosè Manni, Evgeny M. Zdobnov
Software Mentions: 2
Published: about 4 years ago

10.1016/j.ccell.2017.10.004

A Paradoxical Tumor-Suppressor Role for the Rac1 Exchange Factor Vav1 in T Cell Acute Lymphoblastic Leukemia
Cited by: 35
Author(s): Javier Robles‐Valero, L. Francisco Lorenzo‐Martín, Mauricio Menacho-Márquez, Isabel Fernández‐Pisonero, Antonio Abad, Mireia Camós, Marı́a L. Toribio, Lluís Espinosa, Anna Bigas, Xosé R. Bustelo
Software Mentions: 2
Published: about 7 years ago

10.1186/s12864-017-4333-y

Construction of Pará rubber tree genome and multi-transcriptome database accelerates rubber researches
Cited by: 21
Author(s): Yuko Makita, Mika Kawashima, Nyok-Sean Lau, Ahmad Sofiman Othman, Minami Matsui
Software Mentions: 1
Published: almost 7 years ago

10.3389/fonc.2021.641184

Identification and Validation of the Prognostic Stemness Biomarkers in Bladder Cancer Bone Metastasis
Cited by: 4
Author(s): Kang Yao, Xuejun Zhu, Xijun Wang, Shunbao Liao, Mengran Jin, Li Zhang, Xiangyang Wu, Tingxiao Zhao, Jun Zhang, Jun Lee, Danjie Zhu
Software Mentions: 1
Published: over 3 years ago

10.3389/fnins.2018.00119

SP8 Transcriptional Regulation of Cyclin D1 During Mouse Early Corticogenesis
Cited by: 4
Author(s): Ugo Borello, Barbara Berarducci, Edwige Delahaye, David J. Price, Colette Dehay
Software Mentions: 1
Published: over 6 years ago

10.1161/CIRCGEN.118.002353

High-Resolution Regulatory Maps Connect Vascular Risk Variants to Disease-Related Pathways
Cited by: 9
Author(s): Örjan Åkerborg, Rapolas Spalinskas, Sailendra Pradhananga, Anandashankar Anil, Pontus Höjer, Flore-Anne Poujade, Lasse Folkersen, Per Eriksson, Pelin Sahlén
Software Mentions: 1
Published: over 5 years ago

10.1038/srep13969

InbR, a TetR family regulator, binds with isoniazid and influences multidrug resistance in Mycobacterium bovis BCG
Cited by: 15
Author(s): Min Yang, Chunhui Gao, Jialing Hu, Леи Жао, Qiaoyun Huang, Zheng‐Guo He
Software Mentions: 1
Published: about 9 years ago

10.3390/cells7080102

TNFSF14/LIGHT, a Non-Canonical NF-κB Stimulus, Induces the HIF Pathway
Cited by: 12
Author(s): Laura D’Ignazio, Michael Batie, Sónia Rocha
Software Mentions: 1
Published: over 6 years ago

10.1098/rstb.2019.0540

The role of copy-number variation in the reinforcement of sexual isolation between the two European subspecies of the house mouse
Cited by: 13
Author(s): Henry L. North, Pierre Caminade, Dany Séverac, Khalid Belkhir, Carole Smadja
Software Mentions: 1
Published: over 4 years ago

10.7554/eLife.31216

Telomere repeats induce domains of H3K27 methylation in Neurospora
Cited by: 31
Author(s): Kirsty Jamieson, Kevin J McNaught, Tereza Ormsby, Neena A. Leggett, Shinji Honda, Eric U. Selker
Software Mentions: 1
Published: almost 7 years ago

10.1128/JVI.01337-19

CpG Dinucleotides Inhibit HIV-1 Replication through Zinc Finger Antiviral Protein (ZAP)-Dependent and -Independent Mechanisms
Cited by: 48
Author(s): Mattia Ficarelli, Irati Antzin-Anduetza, Rupert Hugh-White, Andrew E. Firth, Helin Sertkaya, Harry Wilson, Stuart J. D. Neil, Reiner Schulz, Chad M. Swanson
Software Mentions: 1
Published: over 4 years ago

10.3390/ijms21083000

HIF-1β Positively Regulates NF-κB Activity via Direct Control of TRAF6
Cited by: 10
Author(s): Laura D’Ignazio, Dilem Shakir, Michael Batie, H.‐Arno J. Müller, Sónia Rocha
Software Mentions: 1
Published: over 4 years ago

10.1186/s12864-018-4598-9

Mapping QTL for white striping in relation to breast muscle yield and meat quality traits in broiler chickens
Cited by: 46
Author(s): Eva Pampouille, Cécile Berri, Simon Boitard, Christelle Hennequet-Antier, Stéphane Beauclercq, Estelle Godet, Christophe Praud, Yves Jégo, Elisabeth Le Bihan‐Duval
Software Mentions: 1
Published: over 6 years ago

10.1186/s12864-019-5756-4

Transcriptome assembly for a colour-polymorphic grasshopper (Gomphocerus sibiricus) with a very large genome size
Cited by: 9
Author(s): Abhijeet Shah, Joseph I. Hoffman, Holger Schielzeth
Software Mentions: 1
Published: over 5 years ago

10.1186/1471-2105-15-306

Personalized Oncology Suite: integrating next-generation sequencing data and whole-slide bioimages
Cited by: 10
Author(s): Andreas Dander, Matthias Baldauf, Michael Sperk, Stephan Pabinger, Benjamin Hiltpolt, Zlatko Trajanoski
Software Mentions: 1
Published: about 10 years ago

Ecosyste.ms: Papers

Projects: bioconductor: Gviz

Papers Mentioning Gviz 134