bioconductor: GenomicAlignments | Projects

10.3390/ijms20184438

Phenotypic Plasticity of Fibroblasts during Mammary Carcinoma Development
Cited by: 13
Author(s): Eiman Elwakeel, Mirko Brüggemann, Annika F. Fink, Marcel H. Schulz, Tobias Schmid, Rajkumar Savai, Bernhard Brüne, Kathi Zarnack, Andreas Weigert
Software Mentions: 3
Published: almost 5 years ago

10.3390/cancers11111650

The Role of Aberrant DNA Methylation in Misregulation of Gene Expression in Gonadotroph Nonfunctioning Pituitary Tumors
Cited by: 10
Author(s): Paulina Kober, Joanna Boresowicz, Natalia Rusetska, Maria Maksymowicz, Agnieszka Paziewska, Michalina Dąbrowska, Jacek Kunicki, Wiesław Bonicki, Jerzy Ostrowski, Janusz A. Siedlecki, Mateusz Bujko
Software Mentions: 3
Published: almost 5 years ago

10.1371/journal.pone.0160975

Understanding the Pathogenicity of Burkholderia contaminans, an Emerging Pathogen in Cystic Fibrosis
Cited by: 28
Author(s): Jaroslav Nunvář, Lucie Kalferstová, Ruhi A. M. Bloodworth, Michal Kolář, José Degrossi, S. Lubovich, Silvia T. Cardona, Pavel Dřevı́nek
Software Mentions: 3
Published: about 8 years ago

10.1186/s12864-018-4539-7

The genome of Austrofundulus limnaeus offers insights into extreme vertebrate stress tolerance and embryonic development
Cited by: 19
Author(s): Josiah Tad Wagner, Param Priya Singh, Amie L. Romney, Claire L. Riggs, Patrick Minx, Steven Cody Woll, Jake Roush, Wesley C. Warren, Anne Brunet, Jason E. Podrabsky
Software Mentions: 3
Published: over 6 years ago

10.1186/s13071-018-3220-y

Pure early zygotic genes in the Asian malaria mosquito Anopheles stephensi
Cited by: 3
Author(s): Yang Wu, Wanqi Hu, James K. Biedler, Xiaoguang Chen, Zhijian Tu
Software Mentions: 3
Published: almost 6 years ago

10.1186/s12862-018-1199-9

The evolution of a series of behavioral traits is associated with autism-risk genes in cavefish
Cited by: 28
Author(s): Masato Yoshizawa, Alexander Settle, Meredith C. Hermosura, Lillian J. Tuttle, Nicolas Cetraro, Courtney N. Passow, Suzanne E. McGaugh
Software Mentions: 3
Published: about 6 years ago

10.1002/humu.24127

Loss of CBY1 results in a ciliopathy characterized by features of Joubert syndrome
Cited by: 11
Author(s): Daniel Epting, Lokuliyange D S Senaratne, Elisabeth Ott, Asbjørn Holmgren, Dulika Sumathipala, Selma Mujezinović Larsen, Julia Wallmeier, Diana Bracht, Kari-Anne M Frikstad, Suzanne Crowley, Alma Sikiric, Tuva Barøy, Barbara Käsmann‐Kellner, Eva L. Decker, Christian Decker, Nadine Bachmann, Sebastian Patzke, Ian G. Phelps, Nicholas Katsanis, Rachel H. Giles, Miriam Schmidts, Manuela Zucknick, Soeren S. Lienkamp, Heymut Omran, Erica E. Davis, Dan Doherty, Petter Strømme, Eirik Frengen, Carsten Bergmann, Doriana Misceo
Software Mentions: 3
Published: almost 4 years ago

10.1128/MCB.00165-17

RNA Binding by Histone Methyltransferases Set1 and Set2
Cited by: 27
Author(s): Camille Sayou, Gonzalo Millán-Zambrano, Helena Santos‐Rosa, Elisabeth Petfalski, Samuel Robson, Jonathan Houseley, Tony Kouzarides, David Tollervey
Software Mentions: 3
Published: about 7 years ago

10.1038/micronano.2017.18

Measurement of copy number variation in single cancer cells using rapid-emulsification digital droplet MDA
Cited by: 13
Author(s): Samuel Kim, Gayatri Premasekharan, Iain C. Clark, Hawi B. Gemeda, Pamela L. Paris, Adam R. Abate
Software Mentions: 3
Published: about 7 years ago

10.3390/life10050059

DNA Methylation Influences miRNA Expression in Gonadotroph Pituitary Tumors
Cited by: 4
Author(s): Joanna Boresowicz, Paulina Kober, Natalia Rusetska, Maria Maksymowicz, Agnieszka Paziewska, Michalina Dąbrowska, Natalia Żeber‐Lubecka, Jacek Kunicki, Wiesław Bonicki, Jerzy Ostrowski, Janusz A. Siedlecki, Mateusz Bujko
Software Mentions: 3
Published: over 4 years ago

10.3390/genes10020138

Spatio-Temporal Transcriptional Dynamics of Maize Long Non-Coding RNAs Responsive to Drought Stress
Cited by: 34
Author(s): Junling Pang, Xia Zhang, Xuhui Ma, Jun Zhao
Software Mentions: 3
Published: over 5 years ago

10.3389/fmicb.2018.02014

Iron Deficiency Generates Oxidative Stress and Activation of the SOS Response in Caulobacter crescentus
Cited by: 25
Author(s): Laura Leaden, Larissa G. Silva, Rodolfo Alvarenga Ribeiro, Naara Marcondes Dos Santos, Alan Péricles Rodrigues Lorenzetti, Thiago Gerônimo Pires Alegria, Mariane Leichsenring Schulz, Marisa Helena Gennari de Medeiros, Tie Koide, Marilis V. Marques
Software Mentions: 3
Published: about 6 years ago

10.1186/s12864-017-3663-0

Transcriptome analysis of the two unrelated fungal β-lactam producers Acremonium chrysogenum and Penicillium chrysogenum: Velvet-regulated genes are major targets during conventional strain improvement programs
Cited by: 22
Author(s): Dominik Terfehr, Tim A. Dahlmann, Ulrich Kück
Software Mentions: 3
Published: over 7 years ago

10.1186/s13227-017-0069-7

Transcriptomic analysis of maternally provisioned cues for phenotypic plasticity in the annual killifish, Austrofundulus limnaeus
Cited by: 50
Author(s): Amie L. Romney, Jason E. Podrabsky
Software Mentions: 3
Published: over 7 years ago

10.1038/s41426-017-0018-5

A multi-omic analysis reveals the regulatory role of CD180 during the response of macrophages to Borrelia burgdorferi
Cited by: 8
Author(s): Ana Carreras-González, Nicolás Navasa, Itziar Martín-Ruiz, José L. Lavín, Mikel Azkargorta, Estíbaliz Atondo, Diego Barriales, Nuria Macías-Cámara, Miguel Ángel Pascual-Itoiz, Leticia Sampedro, Julen Tomás-Cortázar, Ainize Peña‐Cearra, Aize Pellón, Rafael Prados-Rosales, Leticia Abecia, Félix Elortza, Ana M. Aransay, Héctor Rodríguez, Juan Anguíta
Software Mentions: 3
Published: over 6 years ago

10.7554/eLife.53916

Zygotic pioneer factor activity of Odd-paired/Zic is necessary for late function of the Drosophila segmentation network
Cited by: 36
Author(s): Isabella V. Soluri, Lauren M Zumerling, Omar A Payan Parra, Eleanor G. Clark, Shelby A. Blythe
Software Mentions: 3
Published: over 4 years ago

10.7554/eLife.49038

Chromatinization of Escherichia coli with archaeal histones
Cited by: 20
Author(s): Maria Rojec, Antoine Hocher, Kathryn M Stevens, Matthias Merkenschlager, Tobias Warnecke
Software Mentions: 2
Published: almost 5 years ago

10.1038/s42003-020-01527-7

Functional annotation of genetic associations by transcriptome-wide association analysis provides insights into neutrophil development regulation
Cited by: 1
Author(s): Yao Yao, Jia Yang, Qian Qin, Chao Tang, Zhidan Li, Li Chen, Kailong Li, Chunyan Ren, Lu Chen, Shuquan Rao
Software Mentions: 2
Published: over 3 years ago

10.1016/j.cels.2018.06.012

Genome-Scale Oscillations in DNA Methylation during Exit from Pluripotency
Cited by: 65
Author(s): Steffen Rulands, Heather Lee, Stephen J. Clark, Christof Angermueller, Sébastien A. Smallwood, Felix Krueger, Hisham Mohammed, Wendy Dean, Jennifer Nichols, Peter J. Rugg‐Gunn, Gavin Kelsey, Benjamin D. Simons, Wolf Reik
Software Mentions: 2
Published: about 6 years ago

10.1038/srep10693

Cross-species comparative analysis of Dicer proteins during Sindbis virus infection
Cited by: 25
Author(s): Erika Girardi, Mathieu Lefèvre, Béatrice Chane-Woon-Ming, Simona Paro, Bill Claydon, Jean‐Luc Imler, Carine Meignin, Sébastien Pfeffer
Software Mentions: 2
Published: over 9 years ago

10.1128/mBio.03324-20

Plasticity of the Influenza Virus H5 HA Protein
Cited by: 6
Author(s): Huihui Kong, David F. Burke, Tiago José da Silva Lopes, Kenjiro Takada, Masaki Imai, Gongxun Zhong, Masato Hatta, Shufang Fan, Shiho Chiba, Derek J. Smith, Gabriele Neumann, Yoshihiro Kawaoka
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pbio.3000178

Spontaneously slow-cycling subpopulations of human cells originate from activation of stress-response pathways
Cited by: 55
Author(s): Mingwei Min, Sabrina L. Spencer
Software Mentions: 2
Published: over 5 years ago

10.1186/s12864-018-4961-x

Virulence-related comparative transcriptomics of infectious and non-infectious chlamydial particles
Cited by: 10
Author(s): Thomas Beder, Hans Peter Saluz
Software Mentions: 2
Published: about 6 years ago

10.1186/s12864-018-5257-x

Schizont transcriptome variation among clinical isolates and laboratory-adapted clones of the malaria parasite Plasmodium falciparum
Cited by: 21
Author(s): Sarah J. Tarr, Ofelia Díaz‐Ingelmo, Lindsay B. Stewart, Suzanne E. Hocking, Lee G. Murray, Craig W. Duffy, Thomas D. Otto, Lia Chappell, Julian C. Rayner, Gordon A. Awandare, David J. Conway
Software Mentions: 2
Published: almost 6 years ago

10.3390/cancers13040801

AKT3 Expression in Mesenchymal Colorectal Cancer Cells Drives Growth and Is Associated with Epithelial-Mesenchymal Transition
Cited by: 16
Author(s): Joyce Y. Buikhuisen, Patricia M. Gomez Barila, Arezo Torang, Daniëlle Dekker, J.H. de Jong, Kate Cameron, Sara Vitale, Giorgio Stassi, Sander R. van Hooff, Mauro A. A. Castro, Louis Vermeulen, Jan Paul Medema
Software Mentions: 2
Published: over 3 years ago

10.3389/fphys.2020.580618

Regulation of Metabolism by an Ensemble of Different Ion Channel Types: Excitation-Secretion Coupling Mechanisms of Adipokinetic Hormone Producing Cells in Drosophila
Cited by: 7
Author(s): Rebecca Perry, Cecil J. Saunders, Jonathan M. Nelson, Michael J. Rizzo, Jason T. Braco, Erik C. Johnson
Software Mentions: 2
Published: almost 4 years ago

10.1038/s41598-020-71181-w

Multidrug transporter MRP4/ABCC4 as a key determinant of pancreatic cancer aggressiveness
Cited by: 8
Author(s): Ana Sahores, Alejandro Enrique Carozzo, María May, Natalia Gómez, Nicolás Di Siervi, M. De Sousa Serro, Agustín Yaneff, A. Rodríguez-González, Martı́n C. Abba, Carina Shayo, Carlos Davio
Software Mentions: 2
Published: about 4 years ago

10.1210/clinem/dgab072

Differential Mitochondrial Gene Expression in Adipose Tissue Following Weight Loss Induced by Diet or Bariatric Surgery
Cited by: 12
Author(s): Birgitta W. van der Kolk, Maheswary Muniandy, Dorota Kaminska, Marcus Alvarez, Arthur Ko, Min‐Hua Zong, Armand Valsesia, Dominique Langin, Maija Vaittinen, Mirva Pääkkönen, Riikka Jokinen, Sanna Kaye, Sini Heinonen, Kirsi A. Virtanen, Daniel P. Andersson, Ville Männistö, Wim H. M. Saris, Arne Astrup, Mikael Rydén, Ellen E. Blaak, Päivi Pajukanta, Jussi Pihlajamäki, Kirsi H. Pietiläinen
Software Mentions: 2
Published: over 3 years ago

10.1016/j.stemcr.2018.11.005

Axon-Seq Decodes the Motor Axon Transcriptome and Its Modulation in Response to ALS
Cited by: 67
Author(s): Jik Nijssen, Julio Águila, Rein I. Hoogstraaten, Nigel Kee, Eva Hedlund
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pgen.1006658

DUX4-induced dsRNA and MYC mRNA stabilization activate apoptotic pathways in human cell models of facioscapulohumeral dystrophy
Cited by: 73
Author(s): Sean C. Shadle, Jun Zhong, Amy E. Campbell, Melissa Conerly, Sujatha Jagannathan, Chao-Jen Wong, Timothy Morello, Silvère M. van der Maarel, Stephen J. Tapscott
Software Mentions: 2
Published: over 7 years ago

10.1038/s41408-021-00468-6

Germline variants at SOHLH2 influence multiple myeloma risk
Cited by: 5
Author(s): Laura Duran-Lozano, Guðmar Þorleifsson, Aitzkoa Lopez de Lapuente Portilla, Abhishek Niroula, Molly Went, Malte Thodberg, Maroulio Pertesi, Ram Ajore, Caterina Cafaro, Pall I. Olason, Lilja Stefánsdóttir, G. Bragi Walters, Gisli H. Halldorsson, Ingemar Turesson, Martin Kaiser, Niels Weinhold, Niels Abildgaard, Niels Frost Andersen, Ulf Henrik Mellqvist, Anders Waage, Annette Juul-Vangsted, Unnur Þorsteinsdóttir, Markus Hansson, Richard S. Houlston, Thorunn Rafnar, Kári Stefánsson, Björn Nilsson
Software Mentions: 1
Published: over 3 years ago

10.7554/eLife.55637

Start codon disruption with CRISPR/Cas9 prevents murine Fuchs’ endothelial corneal dystrophy
Cited by: 12
Author(s): Hironori Uehara, Xiaohui Zhang, Felipe Pereira, Siddharth Narendran, Sang Ho Choi, Sai Bhuvanagiri, Jinlu Liu, Sangeetha Ravi Kumar, Austin Bohner, Lara Carroll, Bonnie Archer, Yue Zhang, Wei Liu, Guangping Gao, Jayakrishna Ambati, Albert S. Jun, Balamurali K. Ambati
Software Mentions: 1
Published: over 3 years ago

10.1002/2211-5463.12867

Extended in vitro culture of primary human mesenchymal stem cells downregulates Brca1‐related genes and impairs DNA double‐strand break recognition
Cited by: 5
Author(s): Xuanwen Bao, Jing Wang, Guangming Zhou, Attila Aszódi, Veronika Schönitzer, Harry Scherthan, Michael J. Atkinson, Michael Rosemann
Software Mentions: 1
Published: over 4 years ago

Ecosyste.ms: Papers

Projects: bioconductor: GenomicAlignments

Papers Mentioning GenomicAlignments 134