Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: bioconductor: GOSemSim

https://packages.ecosyste.ms/registries/bioconductor.org/packages/GOSemSim

GO-terms Semantic Similarity Measures
2 versions
Latest release: 12 months ago
13 dependent packages
978,854 downloads total

Papers Mentioning GOSemSim 118

10.1038/s41598-017-16081-2

Constructing Genetic Networks using Biomedical Literature and Rare Event Classification
Cited by: 7
Author(s): Amira Al-Aamri, Kamal Taha, Yousof Al-Hammadi, Maher Maalouf, Dirar Homouz
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-018-30455-0

Gene Ontology Enrichment Improves Performances of Functional Similarity of Genes
Cited by: 20
Author(s): Wenting Liu, Jianjun Li, Jagath C. Rajapakse
Software Mentions: 1
Published: about 6 years ago

10.1186/s12918-015-0196-5

Erratum to: ppiPre: predicting protein-protein interactions by combining heterogeneous features
Cited by: 0
Author(s): Yue Deng, Lin Gao, Bingbo Wang
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-019-47558-x

A comprehensive study on genome-wide coexpression network of KHDRBS1/Sam68 reveals its cancer and patient-specific association
Cited by: 16
Author(s): B Sumithra, Urmila Saxena, Asim Bikas Das
Software Mentions: 1
Published: about 5 years ago

10.1186/1752-0509-4-S2-S1

Optimization meets systems biology
Cited by: 48
Author(s): Yong Wang, Xiang-Sun Zhang, Luonan Chen
Software Mentions: 1
Published: about 14 years ago

10.1186/1755-8794-6-57

Integrating human omics data to prioritize candidate genes
Cited by: 32
Author(s): Yong Chen, Xuebing Wu, Rui Jiang
Software Mentions: 1
Published: almost 11 years ago

10.1186/s12864-021-07864-z

Identifying potential association on gene-disease network via dual hypergraph regularized least squares
Cited by: 3
Author(s): Hongpeng Yang, Yongsheng Ding, Jijun Tang, Fei Guo
Software Mentions: 1
Published: about 3 years ago

10.1186/1471-2164-11-704

Human transcriptional interactome of chromatin contribute to gene co-expression
Cited by: 25
Author(s): Xiao Dong, Chao Li, Yunqin Chen, Guohui Ding, Yixue Li
Software Mentions: 1
Published: almost 14 years ago

10.1155/2013/793091

From Ontology to Semantic Similarity: Calculation of Ontology-Based Semantic Similarity
Cited by: 71
Author(s): Mingxin Gan, Xue Dou, Rui Jiang
Software Mentions: 1
Published: almost 12 years ago

10.1186/1471-2105-12-357

An integrative approach to ortholog prediction for disease-focused and other functional studies
Cited by: 581
Author(s): Yanhui Hu, Ian Flockhart, Arunachalam Vinayagam, Clemens Bergwitz, Bonnie Berger, Norbert Perrimon, Stephanie E. Mohr
Software Mentions: 1
Published: about 13 years ago

10.1186/s12859-015-0853-0

Missing value imputation for microRNA expression data by using a GO-based similarity measure
Cited by: 24
Author(s): Yang Yang, Zhuangdi Xu, Dandan Song
Software Mentions: 1
Published: over 8 years ago

10.1186/1471-2105-11-562

An improved method for scoring protein-protein interactions using semantic similarity within the gene ontology
Cited by: 156
Author(s): Shobhit Jain, Gary D. Bader
Software Mentions: 1
Published: almost 14 years ago

10.1186/1471-2105-13-262

Cluster-based assessment of protein-protein interaction confidence
Cited by: 21
Author(s): Atanas Kamburov, Arndt Großmann, Ralf Herwig, Ulrich Stelzl
Software Mentions: 1
Published: almost 12 years ago

10.3389/fmolb.2020.599340

m5C RNA Methylation Primarily Affects the ErbB and PI3K–Akt Signaling Pathways in Gastrointestinal Cancer
Cited by: 16
Author(s): Shixin Xiang, YingLiang Ma, Jing Shen, Yueshui Zhao, Xu Wu, Mingxing Li, Yang Xiao-mi, Parham Jabbarzadeh Kaboli, Fukuan Du, Huijiao Ji, Yan Zheng, Xiang Li, Jing Li, Qinglian Wen, Zhangang Xiao
Software Mentions: 1
Published: almost 4 years ago