Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: bioconductor: GEOquery
https://packages.ecosyste.ms/registries/bioconductor.org/packages/GEOquery
Get data from NCBI Gene Expression Omnibus (GEO)
2 versions
Latest release: 7 months ago
47 dependent packages
1,621,292 downloads total
Papers Mentioning GEOquery 328
10.1155/2018/9412387
Hsa_circ_0001859 Regulates ATF2 Expression by Functioning as an MiR-204/211 Sponge in Human Rheumatoid ArthritisCited by: 34
Author(s): Bingrui Li, Nianyu Li, Le Zhang, Kai Li, Yingtian Xie, Meilan Xue, Zheng Zhang
Software Mentions: 1
Published: over 6 years ago
10.1371/journal.pone.0099834
dbCerEx: A Web-Based Database for the Analysis of Cervical Cancer TranscriptomesCited by: 1
Author(s): Limin Zhou, Wei Zheng, Majing Luo, Jing Feng, Jin Zhang, Yan Wang, Dunlan Zhang, Qiongxiu Tang, Yan He
Software Mentions: 1
Published: almost 10 years ago
10.1371/journal.pone.0108624
Prioritisation and Network Analysis of Crohn's Disease Susceptibility GenesCited by: 4
Author(s): Daniele Muraro, Douglas A. Lauffenburger, Alison Simmons
Software Mentions: 1
Published: over 9 years ago
10.1177/1753425920966645
Comprehensive analysis of neuronal guidance cue expression regulation during monocyte-to-macrophage differentiation reveals post-transcriptional regulation of semaphorin7A by the RNA-binding protein quakingCited by: 1
Author(s): Huayu Zhang, Jurriën Prins, Dianne Vreeken, Barend W. Florijn, Ruben G. de Bruin, Oscar Rj van Hengel, Mieke F van Essen, Jacques M.G.J. Duijs, Hilde Van Esch, Eric P. van der Veer, Anton Jan van Zonneveld, Janine M van Gils
Software Mentions: 1
Published: over 3 years ago
10.1371/journal.pone.0026439
Matrix Metalloproteinase-10 Promotes Kras-Mediated Bronchio-Alveolar Stem Cell Expansion and Lung Cancer FormationCited by: 31
Author(s): Roderick P. Regala, Verline Justilien, Michael P. Walsh, Capella Weems, András Khoór, Nicole R. Murray, Alan P. Fields
Software Mentions: 1
Published: over 12 years ago
10.4172/2157-2518.S6-009
Genome-wide Identification of IRF1 Binding Sites Reveals Extensive Occupancy at Cell Death Associated GenesCited by: 13
Author(s): Alessandro Rettino, Nicole Clarke
Software Mentions: 1
Published: over 11 years ago
10.1186/s13104-018-3441-3
VEGF vascularization pathway in human intervertebral disc does not change during the disc degeneration processCited by: 6
Author(s): Simona Capossela, Alessandro Bertolo, Kapila Gunasekera, Tobias Pötzel, Martin Baur, Jivko Stoyanov
Software Mentions: 1
Published: about 6 years ago
10.1038/s41598-021-97366-5
Meta-analysis of gene expression disease signatures in colonic biopsy tissue from patients with ulcerative colitisCited by: 11
Author(s): Bryan Linggi, Vipul Jairath, Guangyong Zou, Lisa M. Shackelton, Dermot P. McGovern, Azucena Salas, Bram Verstockt, Mark S. Silverberg, Shadi Nayeri, Brian G. Feagan, Niels Vande Casteele
Software Mentions: 1
Published: over 2 years ago
10.3389/fcvm.2020.582399
Molecular Basis of Cardiac and Vascular Injuries Associated With COVID-19Cited by: 9
Author(s): Mahmood Yaseen Hachim, Saba Al Heialy, Abiola Senok, Qutayba Hamid, Alawi A. Alsheikh‐Ali
Software Mentions: 1
Published: over 3 years ago
10.1111/jebm.12373
Brief introduction of medical database and data mining technology in big data eraCited by: 270
Author(s): Jin Yang, Yuanjie Li, Qingqing Liu, Li Li, Aozi Feng, Tianyi Wang, Shuai Zheng, Anding Xu, Jun Lyu
Software Mentions: 1
Published: over 4 years ago
10.7717/peerj.9100
Aberrant expression of two miRNAs promotes proliferation, hepatitis B virus amplification, migration and invasion of hepatocellular carcinoma cells: evidence from bioinformatic analysis and experimental validationCited by: 5
Author(s): Yanming Liu, Yang Cao, Wei Cai, Liangyin Wu, Pingsen Zhao, Xinguang Liu
Software Mentions: 1
Published: about 4 years ago
10.7717/peerj.10269
Identification of hub genes associated with the pathogenesis of diffuse large B-cell lymphoma subtype one characterized by host response via integrated bioinformatic analysesCited by: 2
Author(s): Lingna Zhou, Liya Ding, Yuqi Gong, Jing Zhao, Xiaojin Gong, Ren Zhou, Wei Zhang
Software Mentions: 1
Published: over 3 years ago
10.1098/rsos.181321
Systematic polypharmacology and drug repurposing via an integrated L1000-based Connectivity Map database miningCited by: 35
Author(s): Tsang Pai Liu, Yao Yu Hsieh, Chia Jung Chou, Pei Ming Yang
Software Mentions: 1
Published: over 5 years ago
10.3390/ijms22116131
PRMT5 Selective Inhibitor Enhances Therapeutic Efficacy of Cisplatin in Lung Cancer CellsCited by: 14
Author(s): Khuloud Bajbouj, Rakhee K. Ramakrishnan, Maha Saber-Ayad, Hany A. Omar, Narjes Saheb Sharif-Askari, Jasmin Shafarin, Adel Elmoselhi, Ahmed M.H.Ihmaid, Suhib AlHaj Ali, Abdulla Alalool, Reem Abdullah, Qutayba Hamid
Software Mentions: 1
Published: almost 3 years ago
10.1038/s41398-020-01052-5
Widespread transcriptional disruption of the microRNA biogenesis machinery in brain and peripheral tissues of individuals with schizophreniaCited by: 11
Author(s): Romain Rey, Marie-Françoise Suaud-Chagny, Jean‐Michel Dorey, Jean-Raymond Teyssier, Thierry d’Amato
Software Mentions: 1
Published: over 3 years ago
10.1038/sdata.2018.66
Curated compendium of human transcriptional biomarker dataCited by: 6
Author(s): Nathan P Golightly, Avery Davis Bell, Anna I. Bischoff, Parker Hollingsworth, Stephen R. Piccolo
Software Mentions: 1
Published: about 6 years ago
10.1155/2020/1380504
Bioinformatics Analysis of Genes and Mechanisms in Postherpetic NeuralgiaCited by: 4
Author(s): Yong Qiu, Meng-lei Hao, Xu-Tao Cheng, Zhen Hua
Software Mentions: 1
Published: over 3 years ago
10.1186/s12957-021-02147-z
High GFPT1 expression predicts unfavorable outcomes in patients with resectable pancreatic ductal adenocarcinomaCited by: 4
Author(s): Yitao Gong, Yunzhen Qian, Guopei Luo, Yu Liu, Ruijie Wang, Shengming Deng, Cheng He, Kaizhou Jin, Quanxing Ni, Xianjun Yu, Weiding Wu, Chen Liu
Software Mentions: 1
Published: over 3 years ago
10.1186/1471-2202-8-20
A comparative genomics approach to identifying the plasticity transcriptomeCited by: 27
Author(s): Andreas R. Pfenning, Russell Schwartz, Alison L. Barth
Software Mentions: 1
Published: about 17 years ago
10.3390/metabo11030180
Iron-Bound Lipocalin-2 from Tumor-Associated Macrophages Drives Breast Cancer Progression Independent of FerroportinCited by: 10
Author(s): Claudia Mertens, Matthias Schnetz, Claudia Rehwald, Stephan Grein, Eiman Elwakeel, Andreas Weigert, Bernhard Brüne, Michaela Jung
Software Mentions: 1
Published: about 3 years ago
10.1038/srep35595
Identification of reliable reference genes for qRT-PCR studies of the developing mouse mammary glandCited by: 19
Author(s): Anoeska Agatha Alida van de Moosdijk, Renée van Amerongen
Software Mentions: 1
Published: over 7 years ago
10.1038/srep06280
Anomalous altered expressions of downstream gene-targets in TP53-miRNA pathways in head and neck cancerCited by: 17
Author(s): Sanga Mitra, Nupur Mukherjee, Smarajit Das, Pritha Das, Chinmay Kumar Panda, Jayprokas Chakrabarti
Software Mentions: 1
Published: over 9 years ago
10.1097/MD.0000000000027101
MYL2 as a potential predictive biomarker for rhabdomyosarcomaCited by: 1
Author(s): Wang Junning, Shang Gao, Ke-Qin Dong, Peiyuan Guo, Mengjie Shan
Software Mentions: 1
Published: over 2 years ago
10.1186/s12974-019-1522-4
Macrophage galactose-type lectin (MGL) is induced on M2 microglia and participates in the resolution phase of autoimmune neuroinflammationCited by: 22
Author(s): Juan M. Ilarregui, Gijs Kooij, Elizabeth Rodríguez, Susanne M. A. van der Pol, Nathalie Koning, Hakan Kalay, Joost C. van der Horst, Sandra J. van Vliet, Juan J. García-Vallejo, Helga E. de Vries, Yvette van Kooyk
Software Mentions: 1
Published: almost 5 years ago
10.3389/fgene.2020.577040
Immune Cell Landscape Identification Associates Intrarenal Mononuclear Phagocytes With Onset and Remission of Lupus Nephritis in NZB/W MiceCited by: 2
Author(s): Bin Li, Yan-Lai Tang, Xiao Ni, Wei Chen
Software Mentions: 1
Published: over 3 years ago
10.3389/fcvm.2021.652746
Plasma Metabolites Alert Patients With Chest Pain to Occurrence of Myocardial InfarctionCited by: 8
Author(s): Nan Aa, Ying Lu, Ming Yu, Heng Tang, Zhenyao Lu, Runbing Sun, Liansheng Wang, Chunjian Li, Zhaohui Yang, Jiye Aa, Xiangqing Kong, Guangji Wang
Software Mentions: 1
Published: about 3 years ago
10.1038/s41375-020-0977-8
Therapeutic inhibition of FcγRIIb signaling targets leukemic stem cells in chronic myeloid leukemiaCited by: 6
Author(s): Oliver Parting, Samantha Langer, Maja Kim Kuepper, Caroline Wessling, Shaoguang Li, Till Braunschweig, Nicolas Chatain, Tiago Maié, Ivan G. Costa, Martina Crysandt, Michael Huber, Tim H. Brümmendorf, Steffen Koschmieder, Mirle Schemionek
Software Mentions: 1
Published: almost 4 years ago