bioconductor: GEOquery | Projects

10.1038/s41598-019-40762-9

Meta-analysis suggests evidence of novel stress-related pathway components in Orsay virus - Caenorhabditis elegans viral model
Cited by: 3
Author(s): Prachi Mishra, Jessica Ngo, Jahanshah Ashkani, Frédéric Pio
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-019-43935-8

GREIN: An Interactive Web Platform for Re-analyzing GEO RNA-seq Data
Cited by: 105
Author(s): Naim Al Mahi, Mehdi Fazel Najafabadi, Marcin Pilarczyk, Michal Kouril, Mario Medvedovic
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-019-45934-1

Single-cell RNA-seq variant analysis for exploration of genetic heterogeneity in cancer
Cited by: 20
Author(s): Erik Fasterius, Mathias Uhlén, Cristina Al‐Khalili Szigyarto
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-020-60064-9

Subcellular Compartmentalization of Survivin is Associated with Biological Aggressiveness and Prognosis in Prostate Cancer
Cited by: 15
Author(s): Jan K. Hennigs, Sarah Minner, Pierre Tennstedt, R. Löser, Hartwig Huland, Hans Klose, Markus Graefen, Thorsten Schlomm, Guido Sauter, Carsten Bokemeyer, Friedemann Honecker
Software Mentions: 3
Published: over 4 years ago

10.1038/s41598-021-87703-z

Evidence of a dysregulated vitamin D endocrine system in SARS-CoV-2 infected patient’s lung cells
Cited by: 11
Author(s): B George, Amjesh Revikumar, Aswathy Mary Paul, T.R. Santhoshkumar, M. Radhakrishna Pillai, Rakesh Kumar
Software Mentions: 3
Published: over 3 years ago

10.1093/hmg/ddw412

Transcriptomic profiling of purified patient-derived dopamine neurons identifies convergent perturbations and therapeutics for Parkinson’s disease
Cited by: 33
Author(s): Cynthia Sandor, Paul Robertson, Charmaine Lang, Andreas Heger, Heather Booth, Jane Vowles, Lorna Witty, Rory Bowden, Michele T.M. Hu, Sally A. Cowley, Richard Wade‐Martins, Caleb Webber
Software Mentions: 3
Published: almost 8 years ago

10.1186/s13045-016-0247-4

Targeting of BMI-1 with PTC-209 shows potent anti-myeloma activity and impairs the tumour microenvironment
Cited by: 38
Author(s): Arnold Bolomsky, Karin Schlangen, Wolfgang Schreiner, Niklas Zojer, Heinz Ludwig
Software Mentions: 3
Published: over 8 years ago

10.18632/oncotarget.12390

Meta-analysis of gene expression and integrin-associated signaling pathways in papillary renal cell carcinoma subtypes
Cited by: 4
Author(s): Kai Zhang, Hang-Mao Lee, Gong-Hong Wei, Aki Manninen
Software Mentions: 3
Published: about 8 years ago

10.18632/oncotarget.20548

Gene network inherent in genomic big data improves the accuracy of prognostic prediction for cancer patients
Cited by: 21
Author(s): Yun Hak Kim, Dae Cheon Jeong, Kyoungjune Pak, Tae Sik Goh, Chi Seung Lee, Myoung Eun Han, Ji Young Kim, Liangwen Liu, Chi Dae Kim, Jeon Yeob Jang, Wonjae Cha, Sae Ock Oh
Software Mentions: 3
Published: about 7 years ago

10.1515/med-2020-0405

Identification of the hub genes RUNX2 and FN1 in gastric cancer
Cited by: 12
Author(s): Chao Han, Lei Jin, Xuemei Ma, Hao Qin, Hui‐Yi Lin, Zhongtao Zhang
Software Mentions: 3
Published: almost 5 years ago

10.1371/journal.pone.0181667

Exploring the cross talk between ER stress and inflammation in age-related macular degeneration
Cited by: 19
Author(s): Samira Kheitan, Zarrin Minuchehr, Zahra‐Soheila Soheili
Software Mentions: 2
Published: over 7 years ago

10.3389/fimmu.2021.667690

Exploring the Pathogenesis of Psoriasis Complicated With Atherosclerosis via Microarray Data Analysis
Cited by: 39
Author(s): Wenxing Su, Ying Zhao, Yuqian Wei, Xiaoyan Zhang, Ji Jiang, Shun Fa Yang
Software Mentions: 2
Published: over 3 years ago

10.3389/fimmu.2021.697157

Integrated Bioinformatics and Validation Reveal Potential Biomarkers Associated With Progression of Primary Sjögren’s Syndrome
Cited by: 16
Author(s): Ning Li, Lei Li, Mengyao Wu, Yusi Li, Jie Yang, Yi‐Cheng Wu, Hui Xu, Danyang Luo, Youhe Gao, Xiaochun Fei, Liting Jiang
Software Mentions: 2
Published: over 3 years ago

10.15252/emmm.201809408

EGFR is required for FOS‐dependent bone tumor development via RSK2/CREB signaling
Cited by: 22
Author(s): Markus Linder, Elisabeth Glitzner, Sriram Srivatsa, Latifa Bakiri, Kazuhiko Matsuoka, Parastoo Shahrouzi, Monika Dumanic, Philipp Novoszel, Thomas Mohr, Oliver Langer, Thomas Wanek, Markus Mitterhauser, Erwin F. Wagner, Maria Sibilia
Software Mentions: 2
Published: about 6 years ago

10.1186/s12863-018-0630-y

Molecular mechanism of estrogen-mediated neuroprotection in the relief of brain ischemic injury
Cited by: 8
Author(s): Jiaxuan He, Ya Gao, Gang Wu, Xiaoming Li, Yong Zhang, Weikang Pan, Hui Yu
Software Mentions: 2
Published: over 6 years ago

10.1093/database/bay145

Restructured GEO: restructuring Gene Expression Omnibus metadata for genome dynamics analysis
Cited by: 18
Author(s): Guocai Chen, Juan Camilo Ramírez, Nan Deng, Xing Qiu, Canglin Wu, W. Jim Zheng, Hulin Wu
Software Mentions: 2
Published: almost 6 years ago

10.1186/s12885-017-3453-8

CpG promoter methylation of the ALKBH3 alkylation repair gene in breast cancer
Cited by: 30
Author(s): Olafur A. Stefansson, Stefan Hermanowicz, Jasper van der Horst, Hólmfríður Hilmarsdóttir, Zuzanna Staszczak, Jón G. Jonasson, Laufey Tryggvadóttír, Thorkell Gudjonsson, Stefan Sigurdsson
Software Mentions: 2
Published: over 7 years ago

10.1016/j.celrep.2019.10.019

Sex Differences in the Blood Transcriptome Identify Robust Changes in Immune Cell Proportions with Aging and Influenza Infection
Cited by: 62
Author(s): Erika Bongen, Haley J. Lucian, Avani Khatri, Gabriela K. Fragiadakis, Zachary B. Bjornson, Garry P. Nolan, Paul J. Utz, Purvesh Khatri
Software Mentions: 2
Published: about 5 years ago

10.3390/cancers13123049

Gene Expression Changes Associated with Dedifferentiation in Liposarcoma Predict Overall Survival
Cited by: 0
Author(s): Nicholas B. Shannon, Qiu Xuan Tan, Joey Wee-Shan Tan, Josephine Hendrikson, Wai Har Ng, Gillian Ng, Ying Liu, Grace Hwei Ching Tan, Jolene Si Min Wong, Khee Chee Soo, Melissa Ching Ching Teo, Claramae Shulyn Chia, Chin-Ann Johnny Ong
Software Mentions: 2
Published: over 3 years ago

10.3389/fonc.2021.649004

Differences in Tumor Immune Microenvironment in Metastatic Sites of Breast Cancer
Cited by: 16
Author(s): Hyun-Jong Lee, Kwon Joong Na, Hongyoon Choi
Software Mentions: 2
Published: over 3 years ago

10.3390/cancers11101598

Diagnostic and Prognostic Value of B4GALT1 Hypermethylation and Its Clinical Significance as a Novel Circulating Cell-Free DNA Biomarker in Colorectal Cancer
Cited by: 25
Author(s): Francesco Picardo, Antonella Romanelli, Laura Muinelo‐Romay, Tommaso Mazza, Caterina Fusilli, Paola Parrella, Jorge Barbazán, Rafael López‐López, Raffaela Barbano, Mariangela De Robertis, Chiara Taffon, Veronica Bordoni, Chiara Agrati, Manuela Costantini, Francesca Ricci, Paolo Graziano, Evaristo Maiello, Lucia Anna Muscarella, Vito Michele Fazio, Maria Luana Poeta
Software Mentions: 2
Published: about 5 years ago

10.3389/fonc.2021.677763

NEK2 Promotes Cell Proliferation and Glycolysis by Regulating PKM2 Abundance via Phosphorylation in Diffuse Large B-Cell Lymphoma
Cited by: 9
Author(s): Lingna Zhou, Liya Ding, Yuqi Gong, Jing Zhao, Jing Zhang, Zhengrong Mao, Zhe Wang, Wei Zhang, Ren Zhou
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pone.0179543

Meta-analysis of miRNA expression profiles for prostate cancer recurrence following radical prostatectomy
Cited by: 93
Author(s): Elnaz Pashaei, Maryam Ahmady, Mustafa Özen, Nizamettin Aydin
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0161491

A Meta-Analysis: Identification of Common Mir-145 Target Genes that have Similar Behavior in Different GEO Datasets
Cited by: 21
Author(s): Elnaz Pashaei, Esra Güzel, Mete Emir Özgürses, Göksun Demirel, Nizamettin Aydin, Mustafa Özen
Software Mentions: 2
Published: about 8 years ago

10.1186/1471-2105-8-407

Bioinformatic identification of novel putative photoreceptor specific cis-elements
Cited by: 4
Author(s): Charles G. Danko, Vera A. McIlvain, Maochun Qin, Barry E. Knox, Arkady M. Pertsov
Software Mentions: 2
Published: about 17 years ago

10.3389/fphar.2020.594139

Catalpol Protects Against Pulmonary Fibrosis Through Inhibiting TGF-β1/Smad3 and Wnt/β-Catenin Signaling Pathways
Cited by: 8
Author(s): Fan Yang, Zhaosheng Hou, Hao-Yue Zhu, Xiaoxuan Chen, Wan-Yang Li, Ren-Shuang Cao, Yuxuan Li, Ru Chen, Wei Zhang
Software Mentions: 2
Published: almost 4 years ago

10.1371/journal.pone.0226461

Predicting cancer origins with a DNA methylation-based deep neural network model
Cited by: 22
Author(s): Chunlei Zheng, Rong Xu
Software Mentions: 2
Published: over 4 years ago

10.1186/s12859-019-2825-2

Dynamic genome-scale cell-specific metabolic models reveal novel inter-cellular and intra-cellular metabolic communications during ovarian follicle development
Cited by: 12
Author(s): Beatriz Peñalver Bernabé, Ines Thiele, Eugene Galdones, Anaar Siletz, Sriram Chandrasekaran, Teresa K. Woodruff, Linda J. Broadbelt, Lonnie D. Shea
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0004128

Using Pathway Signatures as Means of Identifying Similarities among Microarray Experiments
Cited by: 26
Author(s): Luca Beltrame, Lisa Rizzetto, Raffaele Paola, Philippe Rocca-Serra, Luca Gambineri, Cristina Battaglia, Duccio Cavalieri
Software Mentions: 2
Published: almost 16 years ago

10.1186/s13059-016-1084-z

Integrative analysis of genetic data sets reveals a shared innate immune component in autism spectrum disorder and its co-morbidities
Cited by: 43
Author(s): Sumaiya Nazeen, Nathan Palmer, Bonnie Berger, Isaac S. Kohane
Software Mentions: 2
Published: about 8 years ago

10.1371/journal.pone.0144316

Multiple Transcriptome Data Analysis Reveals Biologically Relevant Atopic Dermatitis Signature Genes and Pathways
Cited by: 63
Author(s): Debajyoti Ghosh, Lili Ding, Umasundari Sivaprasad, Esmond Geh, Jocelyn M. Biagini Myers, Jonathan A. Bernstein, Gurjit K. Khurana Hershey, Tesfaye B. Mersha
Software Mentions: 2
Published: almost 9 years ago

10.1371/journal.pgen.1005455

Systems Genetics Reveals the Functional Context of PCOS Loci and Identifies Genetic and Molecular Mechanisms of Disease Heterogeneity
Cited by: 80
Author(s): Michelle R. Jones, M. Brower, Ning Xu, Jinrui Cui, Emebet Mengesha, Yii Der I. Chen, Kent D. Taylor, Ricardo Azziz, Mark O. Goodarzi
Software Mentions: 2
Published: about 9 years ago

10.7717/peerj.10280

The long non-coding RNA GHSROS reprograms prostate cancer cell lines toward a more aggressive phenotype
Cited by: 4
Author(s): Patrick B. Thomas, Penny L. Jeffery, Manuel D. Gahete, Eliza Whiteside, Carina Walpole, Michelle Maugham, Lidija Jovanovic, Jennifer H. Gunter, Elizabeth D. Williams, Colleen C. Nelson, Adrian C. Herington, Raúl M Luque, Rakesh N. Veedu, Lisa K. Chopin, Inge Seim
Software Mentions: 2
Published: almost 4 years ago

10.1111/jcmm.16612

MiR‐193b deregulation is associated with Parkinson's disease
Cited by: 13
Author(s): Masoud Baghi, Elaheh Yadegari, Mohsen Rostamian Delavar, Maryam Peymani, Mazdak Ganjalikhani‐Hakemi, Mehri Salari, Mohammad Hossein Nasr-Esfahani, Timothy L. Megraw, Kamran Ghaedi
Software Mentions: 2
Published: over 3 years ago

10.1038/sdata.2017.106

Distinct transcriptional responses of lymphatic endothelial cells to VEGFR-3 and VEGFR-2 stimulation
Cited by: 24
Author(s): Lothar C. Dieterich, Luca Ducoli, Jay W. Shin, Michael Detmar
Software Mentions: 2
Published: about 7 years ago

10.1128/MRA.00587-20

COnTORT: COmprehensive Transcriptomic ORganizational Tool for Simultaneously Retrieving and Organizing Numerous Gene Expression Data Sets from the NCBI Gene Expression Omnibus Database
Cited by: 3
Author(s): Kevin S. Myers, Michael Place, Daniel R. Noguera, Timothy J. Donohue
Software Mentions: 2
Published: over 4 years ago

10.1155/2021/5574130

Elevated LINC00909 Promotes Tumor Progression of Ovarian Cancer via Regulating the miR-23b-3p/MRC2 Axis
Cited by: 11
Author(s): Yu Xu, Guangxin Wu, Fan Yang, Lang He, Xiaohui Xie, Lan Li, Lei Yang, Yun Ma, Qin Zhang, Jiao Chen, Siying Zou, Qin Han, Yan Wang, Shuai Liu, Juan Li, Bin Han, Kaijiang Liu
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-018-27479-x

Damage-associated molecular pattern recognition is required for induction of retinal neuroprotective pathways in a sex-dependent manner
Cited by: 6
Author(s): Marcus Hooper, Jiangang Wang, Robert Browning, John D. Ash
Software Mentions: 2
Published: over 6 years ago

10.1002/cam4.2190

Screening common signaling pathways associated with drug resistance in non‐small cell lung cancer via gene expression profile analysis
Cited by: 7
Author(s): Ting Sun, Qitai Zhao, Chaoqi Zhang, Liu Cao, Mengjia Song, Nomathamsanqa Resegofetse Maimela, Shasha Li, Jinjin Wang, Qun Gao, Guohui Qin, Liping Wang, Yi Zhang
Software Mentions: 2
Published: over 5 years ago

10.1042/BSR20200963

CLCA4 and MS4A12 as the significant gene biomarkers of primary colorectal cancer
Cited by: 5
Author(s): Jing Han, Xue Zhang, Yan Liu, Jing Li, Yibing Liu, Li Feng
Software Mentions: 2
Published: over 4 years ago

10.1155/2020/6954793

Identification and Verification of Biomarker in Clear Cell Renal Cell Carcinoma via Bioinformatics and Neural Network Model
Cited by: 6
Author(s): Bin Liu, Yu Xiao, Hao Li, Aili Zhang, Ling‐Bing Meng, Feng Lü, Zhihong Zhao, Xiaochen Ni, Bo Fan, Xiaoyu Zhang, Shi-Bin Zhao, Yibo Liu
Software Mentions: 2
Published: over 4 years ago

10.1155/2021/9711176

The Antioxidative Role of Natural Compounds from a Green Coconut Mesocarp Undeniably Contributes to Control Diabetic Complications as Evidenced by the Associated Genes and Biochemical Indexes
Cited by: 7
Author(s): Rickta Rani Das, Rahman Ma, Salahuddin Quader Al-Araby, Md. Shahidul Islam, Md. Mamunur Rashid, Nouf Abubakr Babteen, Afnan M. Alnajeebi, Hend F. Alharbi, Philippe Jeandet, Md. Khalid Juhani Rafi, Tanvir Ahmed Siddique, Md. Nazim Uddin, Zainul Amiruddin Zakaria
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-020-60740-w

Classification models for Invasive Ductal Carcinoma Progression, based on gene expression data-trained supervised machine learning
Cited by: 18
Author(s): Shikha Roy, Rakesh Kumar, Vaibhav Mittal, Dinesh Gupta
Software Mentions: 2
Published: over 4 years ago

10.1038/s41598-020-64569-1

Identification of potential microRNA panels for pancreatic cancer diagnosis using microarray datasets and bioinformatics methods
Cited by: 35
Author(s): Roshanak Shams, Samaneh Saberi, Zali Mr, Amir Sadeghi, Soudeh Ghafouri‐Fard, Hamid Asadzadeh Aghdaei
Software Mentions: 2
Published: over 4 years ago

10.3390/biology9070157

Role of B Cell Lymphoma 2 in the Regulation of Liver Fibrosis in miR-122 Knockout Mice
Cited by: 5
Author(s): Kun-Yu Teng, Juan M. Barajas, Peng Hu, Samson T. Jacob, Kalpana Ghoshal
Software Mentions: 2
Published: over 4 years ago

10.1186/s13104-021-05521-y

HTLV-1-associated myelopathy/tropical spastic paraparesis (HAM/TSP) versus adult T-cell leukemia/lymphoma (ATLL)
Cited by: 4
Author(s): Mohadeseh Zarei-Ghobadi, Mohsen Sheikhi, Majid Teymoori‐Rad, Sahar Yaslianifard, Mehdi Norouzi, Somayeh Yaslianifard, Reza Faraji, Mohammad Farahmand, Shiva Bayat, Mohieddin Jafari, Sayed‐Hamidreza Mozhgani
Software Mentions: 2
Published: over 3 years ago

10.1186/s12920-016-0173-x

Efficient and biologically relevant consensus strategy for Parkinson’s disease gene prioritization
Cited by: 22
Author(s): Maykel Cruz-Monteagudo, Fernanda Borges, César Paz‐y‐Miño, M. Natália D. S. Cordeiro, Irene Rebelo, Yunierkis Pérez-Castillo, Aliuska Morales Helguera, Aminael Sánchez-Rodríguez, Eduardo Tejera
Software Mentions: 2
Published: over 8 years ago

10.18632/aging.102610

The correlation and role analysis of COL4A1 and COL4A2 in hepatocarcinogenesis
Cited by: 21
Author(s): Yanli Li, Jiaye Zhang, Yan Chen, Mahmodul Hasan Sohel, Xinrong Ke, Jingqi Chen, Yin‐Xiong Li
Software Mentions: 2
Published: almost 5 years ago

10.1186/s12920-018-0357-7

A meta-analysis of public microarray data identifies biological regulatory networks in Parkinson’s disease
Cited by: 28
Author(s): Lining Su, Chunjie Wang, Chenqing Zheng, Wei H, Xiu–Peng Song
Software Mentions: 2
Published: over 6 years ago

10.1155/2020/2061024

Integrated Bioinformatic Analysis Identifies Networks and Promising Biomarkers for Hepatitis B Virus-Related Hepatocellular Carcinoma
Cited by: 13
Author(s): Yun Ji, Yuyao Yin, Weizhen Zhang
Software Mentions: 2
Published: over 4 years ago

10.1186/s12859-019-2685-9

Integration of transcriptomic data in a genome-scale metabolic model to investigate the link between obesity and breast cancer
Cited by: 21
Author(s): Ilaria Granata, Enrico Troiano, Mara Sangiovanni, Mario Rosario Guarracino
Software Mentions: 2
Published: over 5 years ago

10.1186/s12920-019-0619-z

Identifying driver genes involving gene dysregulated expression, tissue-specific expression and gene-gene network
Cited by: 9
Author(s): Junrong Song, Wei Peng, Rui Wang, Jianxin Wang
Software Mentions: 2
Published: almost 5 years ago

10.1186/s12864-018-4914-4

Gene expression profiles in neurological tissues during West Nile virus infection: a critical meta-analysis
Cited by: 10
Author(s): Robin Kosch, Julien Delarocque, Peter Claus, Stefanie Becker, Klaus Jung
Software Mentions: 2
Published: over 6 years ago

10.1186/s12864-017-3627-4

Exploring the nature of prediagnostic blood transcriptome markers of chronic lymphocytic leukemia by assessing their overlap with the transcriptome at the clinical stage
Cited by: 3
Author(s): Jelle Vlaanderen, Max Leenders, Marc Chadeau‐Hyam, Lützen Portengen, Soterios A. Kyrtopoulos, Ingvar A. Bergdahl, Anders Johansson, Dennie G. A. J. Hebels, Theo M. C. M. de Kok, Paolo Víneis, Roel Vermeulen
Software Mentions: 2
Published: over 7 years ago

10.1186/s12864-018-4578-0

The constitutive differential transcriptome of a brain circuit for vocal learning
Cited by: 23
Author(s): Peter V. Lovell, Nicole A. Huizinga, Samantha R. Friedrich, Morgan Wirthlin, Claudio V. Mello
Software Mentions: 2
Published: over 6 years ago

10.1186/s12864-019-6438-y

Identification and characterization of genes frequently responsive to Xanthomonas oryzae pv. oryzae and Magnaporthe oryzae infections in rice
Cited by: 7
Author(s): Weiwen Kong, Li Ding, Xue Xia
Software Mentions: 2
Published: almost 5 years ago

10.3389/fgene.2020.578143

Key Molecules and Pathways Underlying Sporadic Amyotrophic Lateral Sclerosis: Integrated Analysis on Gene Expression Profiles of Motor Neurons
Cited by: 10
Author(s): Jianing Lin, Pian Huang, Wei-Neng Chen, Cheng-Hui Ye, Huanxing Su, Xiaoli Yao
Software Mentions: 2
Published: about 4 years ago

10.3389/fgene.2020.602922

Identification of Potential Diagnostic and Prognostic Biomarkers for Colorectal Cancer Based on GEO and TCGA Databases
Cited by: 6
Author(s): Zhenjiang Wang, Mingyi Guo, Xinbo Ai, Jiaming Cheng, Zaiwei Huang, Xiaobin Li, Yuping Chen
Software Mentions: 2
Published: almost 4 years ago

10.3389/fendo.2021.694893

New Insights Into Mitochondrial Dysfunction at Disease Susceptibility Loci in the Development of Type 2 Diabetes
Cited by: 5
Author(s): Hannah Maude, Winston Lau, Nikolas Maniatis, Toby Andrew
Software Mentions: 2
Published: over 3 years ago

10.3389/fgene.2014.00131

Identification of potential therapeutic targets in a model of neuropathic pain
Cited by: 13
Author(s): Hemalatha B. Raju, Zoë A. Englander, Enrico Capobianco, Nicholas F. Tsinoremas, Jessica K. Lerch
Software Mentions: 2
Published: over 10 years ago

10.3389/fendo.2021.745984

Glucose Metabolism Disorder Induces Spermatogenic Dysfunction in Northern Pig-Tailed Macaques (Macaca leonina) With Long-Term SIVmac239 Infection
Cited by: 0
Author(s): Tian-Zhang Song, Mingxu Zhang, Han-Dan Zhang, Xuehui Wang, Wei Pang, Ren‐Rong Tian, Yong‐Tang Zheng
Software Mentions: 2
Published: about 3 years ago

10.3389/fendo.2020.601745

Integrated Multichip Analysis Identifies Potential Key Genes in the Pathogenesis of Nonalcoholic Steatohepatitis
Cited by: 5
Author(s): Jianzhong Ye, Yishuai Lin, Qing Wang, Yating Li, Yajie Zhao, Lijiang Chen, Qing Wu, Chi Xu, Chaohui Zhou, Yao Sun, Wanchun Ye, Fumao Bai, Tong Zhou
Software Mentions: 2
Published: almost 4 years ago

10.3389/fcell.2021.631057

Identification of New miRNA-mRNA Networks in the Development of Non-syndromic Cleft Lip With or Without Cleft Palate
Cited by: 9
Author(s): Chengyi Fu, Shu Lou, Guirong Zhu, Liwen Fan, Xin Yu, Weihao Zhu, Lan Ma, Lin Wang, Yongchu Pan
Software Mentions: 2
Published: over 3 years ago

10.3389/fgene.2015.00233

miR-23a impairs bone differentiation in osteosarcoma via down-regulation of GJA1
Cited by: 27
Author(s): Yevgeniy Gindin, Yuan Jiang, Princy Francis, Robert L. Walker, Ogan D. Abaan, Yuelin J. Zhu, Paul S. Meltzer
Software Mentions: 2
Published: over 9 years ago

10.3389/fimmu.2021.721970

Extracellular CIRP Induces an Inflammatory Phenotype in Pulmonary Fibroblasts via TLR4
Cited by: 8
Author(s): Siavash Bolourani, Ezgi Sari, Max Brenner, Ping Wang
Software Mentions: 2
Published: over 3 years ago

10.12688/f1000research.28033.1

HGNChelper: identification and correction of invalid gene symbols for human and mouse
Cited by: 15
Author(s): Sehyun Oh, Jasmine Abdelnabi, Ragheed Al-Dulaimi, Ayush Aggarwal, Marcel Ramos, Sean Davis, Markus Riester, Levi Waldron
Software Mentions: 2
Published: almost 4 years ago

10.3389/fimmu.2020.02128

The Oncometabolite 5′-Deoxy-5′-Methylthioadenosine Blocks Multiple Signaling Pathways of NK Cell Activation
Cited by: 6
Author(s): Bénédikt Jacobs, Sebastian Schlögl, Carolin Dorothea Strobl, Simon Völkl, Andrew L. Stoll, Dimitrios Mougiakakos, Karl‐Johan Malmberg, Andréas Mackensen, Michael Aigner
Software Mentions: 2
Published: about 4 years ago

10.3892/etm.2014.1789

Identification of genes in HepG2 cells that respond to DNA methylation and histone deacetylation inhibitor treatment
Cited by: 4
Author(s): Qiang Sun, Yu Xie, Guojing Wang, Jidong Li
Software Mentions: 2
Published: over 10 years ago

10.1093/humrep/dex024

Genome-wide genetic analyses highlight mitogen-activated protein kinase (MAPK) signaling in the pathogenesis of endometriosis
Cited by: 77
Author(s): Outi Uimari, Nilüfer Rahmioğlu, Dale R. Nyholt, Katy Vincent, Stacey A. Missmer, Christian M. Becker, Andrew P. Morris, Grant W. Montgomery, Krina T. Zondervan
Software Mentions: 1
Published: almost 8 years ago

10.1590/1414-431X20209206

MicroRNA-302b mitigates renal fibrosis via inhibiting TGF-β/Smad pathway activation
Cited by: 4
Author(s): Mengkui Sun, Wei Zhou, Fei Yao, Jianming Song, Yanan Xu, Zhimei Deng, Hongwang Diao, Shoulin Li
Software Mentions: 1
Published: almost 4 years ago

10.1186/1471-2105-15-S11-S3

Leveraging the new with the old: providing a framework for the integration of historic microarray studies with next generation sequencing
Cited by: 1
Author(s): Michael Bauer, Shweta S. Chavan, Erich A. Peterson, Christoph Heuck, Donald J. Johann
Software Mentions: 1
Published: about 10 years ago

10.3389/fgene.2018.00042

Identification of Shared Molecular Signatures Indicate the Susceptibility of Endometriosis to Multiple Sclerosis
Cited by: 15
Author(s): Amit Katiyar, Sujata Sharma, Punit Kaur
Software Mentions: 1
Published: almost 7 years ago

10.1002/em.22064

Transcriptomic responses in the oral cavity of F344 rats and <scp>B6C3F1</scp> mice following exposure to Cr(VI): Implications for risk assessment
Cited by: 12
Author(s): Chad M. Thompson, Julia E. Rager, Mina Suh, Caroline Ring, Deborah M. Proctor, Laurie C. Haws, Rebecca C. Fry, Mark Anglin Harris
Software Mentions: 1
Published: about 8 years ago

10.18632/oncotarget.16700

Exploring the key genes and pathways in enchondromas using a gene expression microarray
Cited by: 7
Author(s): Zhongju Shi, Hengxing Zhou, Bin Pan, Lu Lu, Yi No Kang, Lu Liu, Zhijian Wei
Software Mentions: 1
Published: over 7 years ago

10.18632/oncotarget.16732

Integrated expression profiles analysis reveals novel predictive biomarker in pancreatic ductal adenocarcinoma
Cited by: 44
Author(s): Hongzhe Li, Xinjing Wang, Yuan Fang, Zhen Huo, Xiang Lü, Xi Zhan, Xiaxin Deng, Chenghong Peng, Baiyong Shen
Software Mentions: 1
Published: over 7 years ago

10.3389/fmicb.2020.607002

Microbial Metabolic Genes Crucial for S. aureus Biofilms: An Insight From Re-analysis of Publicly Available Microarray Datasets
Cited by: 7
Author(s): Rania Nassar, Mahmood Y. Hachim, Mohannad Nassar, Eleftherios G. Kaklamanos, Mohamed Jamal, David Wynne Williams, Abiola Senok
Software Mentions: 1
Published: almost 4 years ago

10.18632/oncotarget.17426

Systematic analysis of coronary artery disease datasets revealed the potential biomarker and treatment target
Cited by: 9
Author(s): Yan Shi, Sijin Yang, Man Luo, Weidong Zhang, Zun‐Ping Ke
Software Mentions: 1
Published: over 7 years ago

10.1186/1471-2407-12-75

REGγ is associated with multiple oncogenic pathways in human cancers
Cited by: 54
Author(s): Jing He, Long Cui, Yu Zeng, Guangqiang Wang, Ping Zhou, Yuanyuan Yang, Lei Ji, Yanyan Zhao, Jiwu Chen, Zhuo Wang, Tieliu Shi, Pei Zhang, Rui Chen, Xiao-Tao Li
Software Mentions: 1
Published: over 12 years ago

10.3390/biom11050639

Improving Gemcitabine Sensitivity in Pancreatic Cancer Cells by Restoring miRNA-217 Levels
Cited by: 12
Author(s): Concetta Panebianco, Nadia Trivieri, Antonio Villani, Fulvia Terracciano, Tiziana Pia Latiano, Adele Potenza, Francesco Perri, Elena Binda, Valerio Pazienza
Software Mentions: 1
Published: over 3 years ago

10.1093/database/bav102

MtiBase: a database for decoding microRNA target sites located within CDS and 5′UTR regions from CLIP-Seq and expression profile datasets
Cited by: 23
Author(s): Zhi-Wei Guo, Chen Xie, Jing Yang, Junhao Li, Jianhua Yang, Limin Zheng
Software Mentions: 1
Published: about 9 years ago

10.3389/fnins.2020.608349

Identification and Characterization of Biomarkers and Their Role in Opioid Addiction by Integrated Bioinformatics Analysis
Cited by: 4
Author(s): Xiuning Zhang, Hailei Yu, Rui Bai, Chunling Ma
Software Mentions: 1
Published: almost 4 years ago

10.3390/cells8030216

Differential Expression of Mitochondrial Biogenesis Markers in Mouse and Human SHH-Subtype Medulloblastoma
Cited by: 3
Author(s): Maria Łastowska, Agnieszka Karkucińska-Więckowska, James A. Waschek, Paweł Niewiadomski
Software Mentions: 1
Published: over 5 years ago

10.3389/fgene.2019.01306

Identification of Platform-Independent Diagnostic Biomarker Panel for Hepatocellular Carcinoma Using Large-Scale Transcriptomics Data
Cited by: 35
Author(s): Harpreet Kaur, Anjali Dhall, Rajesh Kumar, Gajendra P. S. Raghava
Software Mentions: 1
Published: almost 5 years ago

10.3389/fimmu.2018.03085

IRF4 and IRGs Delineate Clinically Relevant Gene Expression Signatures in Systemic Lupus Erythematosus and Rheumatoid Arthritis
Cited by: 17
Author(s): Javier Rodríguez‐Carrio, Patricia López, Mercedes Alperi-López, Luis Caminal-Montero, Francisco Javier Ballina-García, Ana Suárez
Software Mentions: 1
Published: almost 6 years ago

10.3389/fonc.2021.667715

An Immunometabolic Shift Modulates Cytotoxic Lymphocyte Activation During Melanoma Progression in TRPA1 Channel Null Mice
Cited by: 5
Author(s): Maria Fernanda Forni, Omar Domínguez-Amorocho, Leonardo Vinícius Monteiro de Assis, Gabriela Sarti Kinker, Maria Nathália Moraes, Ana Maria de Lauro Castrucci, Niels Olsen Saraiva Câmara
Software Mentions: 1
Published: over 3 years ago

10.3389/fimmu.2017.01801

AIMp1 Potentiates TH1 Polarization and Is Critical for Effective Antitumor and Antiviral Immunity
Cited by: 24
Author(s): Dan Liang, Lin Tian, Ran You, Matthew M. Halpert, Vanaja Konduri, Yunyu Baig, Silke Paust, Doyeun Kim, Sung Hoon Kim, Fuli Jia, Shixia Huang, Xiang Zhang, Farrah Kheradmand, David B. Corry, Brian E. Gilbert, Jonathan M. Levitt, William K. Decker
Software Mentions: 1
Published: almost 7 years ago

10.3389/fimmu.2020.01372

Interferon-Induced Transmembrane Protein (IFITM3) Is Upregulated Explicitly in SARS-CoV-2 Infected Lung Epithelial Cells
Cited by: 61
Author(s): Mahmood Y. Hachim, Saba Al Heialy, Ibrahim Y. Hachim, Rabih Halwani, Abiola Senok, Azzam A. Maghazachi, Qutayba Hamid
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-68835-0

Gene expression profiling identifies the role of Zac1 in cervical cancer metastasis
Cited by: 15
Author(s): Hui‐Chen Su, Sheng‐Cheng Wu, Li-Chen Yen, Li-Kang Chiao, Jehng-Kang Wang, Yi-Lin Chiu, Ching–Liang Ho, Shih‐Ming Huang
Software Mentions: 1
Published: over 4 years ago

10.1155/2019/9528584

Identification of Key Pathways and Genes of Acute Respiratory Distress Syndrome Specific Neutrophil Phenotype
Cited by: 5
Author(s): Dong Wang, Yajuan Li, Chao Gu, Mengjie Liu, Yuelan Wang
Software Mentions: 1
Published: over 5 years ago

10.1155/2020/6247489

Exploring the Key Genes and Pathways in the Formation of Corneal Scar Using Bioinformatics Analysis
Cited by: 5
Author(s): Binfeng Liu, Ang Li, Hongbo Wang, Jialin Wang, Gongwei Zhai, Haohao Ma, Shiqing Feng, Liyun Liu, Yanzheng Gao
Software Mentions: 1
Published: almost 5 years ago

10.1155/2021/3381957

ARHGEF3 Associated with Invasion, Metastasis, and Proliferation in Human Osteosarcoma
Cited by: 3
Author(s): Jie Gong, Wei Tang, Bin Lv, Shushu Zhang, Tingjuan Fan, Guangyu Gao, Dong Chen, Yulong Liu
Software Mentions: 1
Published: over 3 years ago

10.3390/ijms19071920

A hnRNP K–AR-Related Signature Reflects Progression toward Castration-Resistant Prostate Cancer
Cited by: 16
Author(s): Matteo Capaia, Ilaria Granata, Mario Rosario Guarracino, Andrea Petretto, Elvira Inglese, Carlo Cattrini, Nicoletta Ferrari, Francesco Boccardo, Paola Barboro
Software Mentions: 1
Published: over 6 years ago

10.1155/2020/4505720

Differential Expression of mRNAs in Peripheral Blood Related to Prodrome and Progression of Alzheimer’s Disease
Cited by: 13
Author(s): Weishuang Xue, Jinwei Li, Kailei Fu, Teng Wang
Software Mentions: 1
Published: about 4 years ago

10.4103/2153-3539.73505

Lewis Paul D: R for Medicine and Biology
Cited by: 0
Author(s): Gary Moore
Software Mentions: 1
Published: almost 15 years ago

10.3389/fpls.2021.707286

Complex Networks of Prion-Like Proteins Reveal Cross Talk Between Stress and Memory Pathways in Plants
Cited by: 9
Author(s): Sampurna Garai, Citu, Sneh L. Singla‐Pareek, Sudhir K. Sopory, Charanpreet Kaur, Gitanjali Yadav
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-021-90424-y

Genome-wide identification of potential biomarkers in multiple myeloma using meta-analysis of mRNA and miRNA expression data
Cited by: 12
Author(s): Amit Katiyar, Gurvinder Kaur, Lata Rani, Lingaraja Jena, Harpreet Singh, Lalit Kumar, Atul Sharma, Punit Kaur, Ritu Gupta
Software Mentions: 1
Published: over 3 years ago

10.1155/2021/8874578

FCGR2A Could Function as a Prognostic Marker and Correlate with Immune Infiltration in Head and Neck Squamous Cell Carcinoma
Cited by: 8
Author(s): Yongmei Dai, Wenhan Chen, Junpeng Huang, Tongjian Cui
Software Mentions: 1
Published: over 3 years ago

10.1155/2017/4198035

Systems Pharmacological Approach of<i> Pulsatillae Radix</i> on Treating Crohn’s Disease
Cited by: 12
Author(s): Su Yeon Suh, Won Gun An
Software Mentions: 1
Published: almost 8 years ago

10.1155/2019/8179145

Differential Expression of mRNAs in the Brain Tissues of Patients with Alzheimer’s Disease Based on GEO Expression Profile and Its Clinical Significance
Cited by: 27
Author(s): Guowei Ma, Mingyan Liu, Ke Du, Xin Zhong, Shiqiang Gong, Linchi Jiao, Minjie Wei
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0180616

Prediction of novel target genes and pathways involved in irinotecan-resistant colorectal cancer
Cited by: 19
Author(s): Precious Takondwa Makondi, Chi Ming Chu, Po Li Wei, Yu Jia Chang
Software Mentions: 1
Published: over 7 years ago

Projects: bioconductor: GEOquery

Papers Mentioning GEOquery 328