bioconductor: GEM | Projects | Ecosyste.ms: Papers

10.1186/s12874-017-0402-9

Evidence mapping based on systematic reviews of therapeutic interventions for gastrointestinal stromal tumors (GIST)
Cited by: 17
Author(s): Mónica Ballesteros, Nadia Montero, Antonio López‐Pousa, Gerard Urrútia, Iván Solà, Gabriel Rada, Héctor Pardo-Hernandez, Xavier Bonfill
Software Mentions: 1
Published: about 7 years ago

10.1186/s12860-020-00304-y

GSDB: a database of 3D chromosome and genome structures reconstructed from Hi-C data
Cited by: 9
Author(s): Oluwatosin Oluwadare, Max Highsmith, Douglass Turner, E Aiden, Jianlin Cheng
Software Mentions: 1
Published: over 4 years ago

10.1186/s40608-018-0226-0

A technology-assisted health coaching intervention vs. enhanced usual care for Primary Care-Based Obesity Treatment: a randomized controlled trial
Cited by: 13
Author(s): Clare Viglione, Dylaney Bouwman, Nadera Rahman, Yixin Fang, Jeannette M. Beasley, Scott E. Sherman, Xavier Pi‐Sunyer, Judith Wylie‐Rosett, Craig Tenner, Melanie Jay
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12887-017-0842-8

Limitations and opportunities of whole blood bilirubin measurements by GEM premier 4000®
Cited by: 5
Author(s): Li Wang, Arianne Albert, Benjamin Jung, Keyvan Hadad, Martha E. Lyon, Melanie Basso
Software Mentions: 1
Published: over 7 years ago

10.1186/1471-2458-13-940

FRED (A Framework for Reconstructing Epidemic Dynamics): an open-source software system for modeling infectious diseases and control strategies using census-based populations
Cited by: 166
Author(s): John J. Grefenstette, Shawn T. Brown, Roni Rosenfeld, Jay V. DePasse, N. T. B. Stone, Phillip Cooley, William Wheaton, Alona Fyshe, David Galloway, Anuroop Sriram, Hasan Güçlü, Thomas Abraham, Donald S. Burke
Software Mentions: 1
Published: about 11 years ago

10.1186/1471-2458-12-639

Arsenic exposure through drinking water increases the risk of liver and cardiovascular diseases in the population of West Bengal, India
Cited by: 105
Author(s): Nandana Das, Somnath Paul, Debmita Chatterjee, Nilanjana Banerjee, Niladri Shekhar Majumder, Nilendu Sarma, Tanmoy Jyoti Sau, Santanu Basu, Siwalik Banerjee, Papiya Majumder, A. K. Bandyopadhyay, J. Christopher States, Ashok K. Giri
Software Mentions: 1
Published: over 12 years ago

10.1186/1472-6807-14-4

Synthetic cationic antimicrobial peptides bind with their hydrophobic parts to drug site II of human serum albumin
Cited by: 76
Author(s): Audun Sivertsen, Johan Isaksson, Hanna‐Kirsti S. Leiros, Johan Svenson, John S. Svendsen, Bjørn Olav Brandsdal
Software Mentions: 1
Published: almost 11 years ago

10.1093/bioinformatics/btaa222

GenMap: ultra-fast computation of genome mappability
Cited by: 80
Author(s): Christopher Pockrandt, Mai Alzamel, Costas S. Iliopoulos, Knut Reinert
Software Mentions: 1
Published: over 4 years ago

10.1093/biomethods/bpz011

A bioinformatic pipeline to analyze ChIP-exo datasets
Cited by: 4
Author(s): Christoph Sebastian Börlin, David Bergenholm, Petter Holland, Jens Nielsen
Software Mentions: 1
Published: almost 6 years ago

10.1155/2015/957518

Biologic Agents for Periodontal Regeneration and Implant Site Development
Cited by: 42
Author(s): Fernando Suárez-López Del Amo, Alberto Monje, Miguel Padial‐Molina, Zhihui Tang, Hom Lay Wang
Software Mentions: 1
Published: almost 10 years ago

10.1186/s13068-020-1665-7

Large-scale kinetic metabolic models of Pseudomonas putida KT2440 for consistent design of metabolic engineering strategies
Cited by: 31
Author(s): Milenko Tokic, Vassily Hatzimanikatis, Ljubiša Mišković
Software Mentions: 1
Published: over 4 years ago

10.20517/cdr.2019.95

Entrapment of DNA topoisomerase-DNA complexes by nucleotide/nucleoside analogs
Cited by: 10
Author(s): William H. Gmeiner
Software Mentions: 1
Published: almost 6 years ago

10.1155/2020/8567320

Targeting Myeloid-Derived Suppressor Cells Is a Novel Strategy for Anti-Psoriasis Therapy
Cited by: 10
Author(s): Chao Chen, Lirong Tan, Wu Zhu, Lei Li, Yehong Kuang, Panpan Li, Jie Li, Xiang Chen, Cong Peng
Software Mentions: 1
Published: over 4 years ago

10.1186/s12934-018-1015-7

In silico model-guided identification of transcriptional regulator targets for efficient strain design
Cited by: 9
Author(s): Lokanand Koduru, Meiyappan Lakshmanan, Dong-Yup Lee
Software Mentions: 1
Published: about 6 years ago

10.1186/s12934-017-0669-x

A review on Lactococcus lactis: from food to factory
Cited by: 213
Author(s): Adelene Ai‐Lian Song, Lionel Lian Aun In, Swee Hua Erin Lim, Raha Abdul Rahim
Software Mentions: 1
Published: over 7 years ago

10.1186/s12934-018-0983-y

Elucidating redox balance shift in Scheffersomyces stipitis’ fermentative metabolism using a modified genome-scale metabolic model
Cited by: 9
Author(s): Matthew Hilliard, Andrew Damiani, Q. Peter He, Thomas W. Jeffries, Jin Wang
Software Mentions: 1
Published: about 6 years ago

10.3390/microorganisms8121849

Current Status and Future Strategies to Increase Secondary Metabolite Production from Cyanobacteria
Cited by: 14
Author(s): Yu‐Jin Jeong, Sang-Hyeok Cho, Hookeun Lee, Hyo-Won Choi, Dong‐Myung Kim, Choul-Gyun Lee, Suhyung Cho, Byung-Kwan Cho
Software Mentions: 1
Published: almost 4 years ago

10.1186/s10020-021-00300-8

Everolimus regulates the activity of gemcitabine-resistant pancreatic cancer cells by targeting the Warburg effect via PI3K/AKT/mTOR signaling
Cited by: 24
Author(s): Jing Cui, Yinglu Guo, Heshui Wu, Jie Xiong, Tao Peng
Software Mentions: 1
Published: over 3 years ago

10.1002/1878-0261.12179

<scp>CQ</scp> sensitizes human pancreatic cancer cells to gemcitabine through the lysosomal apoptotic pathway via reactive oxygen species
Cited by: 31
Author(s): Zhiping Fu, Xi Cheng, Jie Kuang, Haoran Feng, Lingxie Chen, Juyong Liang, Xiaonan Shen, Stanley Yuen, Chenghong Peng, Baiyong Shen, Zhijian Jin, Weihua Qiu
Software Mentions: 1
Published: over 6 years ago

10.3390/v10050221

Within-Host Recombination in the Foot-and-Mouth Disease Virus Genome
Cited by: 23
Author(s): Luca Ferretti, Antonello Di Nardo, Benjamin J Singer, Lidia Lasecka-Dykes, Greg Logan, Caroline F. Wright, Eva Pérez-Martín, Donald P. King, Tobias J. Tuthill, Paolo Ribeca
Software Mentions: 1
Published: over 6 years ago

10.7717/peerj.4686

Modulation of transcriptional activity in brain lower grade glioma by alternative splicing
Cited by: 6
Author(s): Li Jin, Yan Wang, Xianglian Meng, Hong Liang
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pbio.1000429

Cryptic Variation between Species and the Basis of Hybrid Performance
Cited by: 44
Author(s): Ulises Rosas, Nicholas H. Barton, Lucy Copsey, Pierre Barbier de Reuille, Enrico Coen
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pcbi.1005444

redGEM: Systematic reduction and analysis of genome-scale metabolic reconstructions for development of consistent core metabolic models
Cited by: 57
Author(s): Meriç Ataman, Daniel Federico Hernandez Gardiol, Georgios Fengos, Vassily Hatzimanikatis
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pcbi.1005118

Error Correction and the Structure of Inter-Trial Fluctuations in a Redundant Movement Task
Cited by: 30
Author(s): Jaison Jacob John, Jonathan B. Dingwell, Joseph P. Cusumano
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pcbi.1005513

lumpGEM: Systematic generation of subnetworks and elementally balanced lumped reactions for the biosynthesis of target metabolites
Cited by: 37
Author(s): Meriç Ataman, Vassily Hatzimanikatis
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pcbi.1005249

Improved Prediction of Non-methylated Islands in Vertebrates Highlights Different Characteristic Sequence Patterns
Cited by: 7
Author(s): Matthew R. Huska, Martin Vingron
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pgen.1004682

Role of STN1 and DNA Polymerase α in Telomere Stability and Genome-Wide Replication in Arabidopsis
Cited by: 28
Author(s): Elisa Derboven, Heinz Ekker, Branislav Kusenda, Petra Bulánková, Karel Říha
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pgen.1002552

The Human Pancreatic Islet Transcriptome: Expression of Candidate Genes for Type 1 Diabetes and the Impact of Pro-Inflammatory Cytokines
Cited by: 397
Author(s): Décio L. Eizirik, Michael Sammeth, Thomas Bouckenooghe, Guy Bottu, Giorgia Sisino, Mariana Igoillo-Esteve, Fernanda Ortis, Izortze Santín, Máikel Luís Colli, Jenny Barthson, Luc Bouwens, Linda Hughes, Lorna Gregory, Gerton Lunter, Lorella Marselli, Piero Marchetti, Mark I. McCarthy, Miriam Cnop
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0109384

Indexes of Large Genome Collections on a PC
Cited by: 36
Author(s): Agnieszka Danek, Sebastian Deorowicz, Szymon Grabowski
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0114894

Identification of Genetic Alterations, as Causative Genetic Defects in Long QT Syndrome, Using Next Generation Sequencing Technology
Cited by: 26
Author(s): Óscar Campuzano, Geòrgia Sarquella-Brugada, Irene Mademont‐Soler, Catarina Allegue, Sergi César, Carles Ferrer-Costa, Mònica Coll, Jesús Matés, Anna Iglesias, Josép Brugada, Ramón Brugada
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0110377

Development and Validation of a 20K Single Nucleotide Polymorphism (SNP) Whole Genome Genotyping Array for Apple (Malus × domestica Borkh)
Cited by: 184
Author(s): Luca Bianco, Alessandro Cestaro, Daniel J. Sargent, Elisa Banchi, Sophia Derdak, Mario Di Guardo, Silvio Salvi, J. Jansen, Roberto Viola, Marta Gut, François Laurens, David Chagné, Riccardo Velasco, Eric van de Weg, Michela Troggio
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0212296

Feasibility of integrated, multilevel care for cardiovascular diseases (CVD) and HIV in low- and middle-income countries (LMICs): A scoping review
Cited by: 17
Author(s): Temitope Ojo, Lynette Lester, Juliet Iwelunmor, Joyce Gyamfi, Chisom Obiezu-Umeh, Deborah Onakomaiya, Angela Aifah, Shreya Nagendra, Jumoke Opeyemi, Mofetoluwa Oluwasanmi, Milena Dalton, Ucheoma Nwaozuru, Dorice Vieira, Gbenga Ogedegbe, Bernadette Boden‐Albala
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0030377

Fast Computation and Applications of Genome Mappability
Cited by: 464
Author(s): Thomas Derrien, Jordi Estellé, Santiago Marco Sola, David G. Knowles, Emanuele Raineri, Roderic Guigó, Paolo Ribeca
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0163521

NSG Mice Provide a Better Spontaneous Model of Breast Cancer Metastasis than Athymic (Nude) Mice
Cited by: 73
Author(s): Madhavi Puchalapalli, Xianke Zeng, Liang Mu, Annika Anderson, Laura Hix Glickman, Ming Zhang, Megan Sayyad, Sierra Mosticone Wangensteen, Charles V. Clevenger, Jennifer E. Koblinski
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0145490

Parallel and Scalable Short-Read Alignment on Multi-Core Clusters Using UPC++
Cited by: 10
Author(s): Jorge González-Domínguez, Yongchao Liu, Bertil Schmidt
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0253626

A Hessian-based decomposition characterizes how performance in complex motor skills depends on individual strategy and variability
Cited by: 6
Author(s): Paolo Tommasino, Antonella Maselli, Domenico Campolo, Francesco Lacquaniti, Andrea d’Avella
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pone.0245325

Colonization of different biomes drove the diversification of the Neotropical Eidmanacris crickets (Insecta: Orthoptera: Grylloidea: Phalangopsidae)
Cited by: 8
Author(s): Lucas Denadai De Campos, Pedro G. B. Souza-Dias, Laure Desutter‐Grandcolas, Silvio Shigueo Nihei
Software Mentions: 1
Published: almost 4 years ago

10.1371/journal.pone.0187046

DNase-capture reveals differential transcription factor binding modalities
Cited by: 2
Author(s): Daniel Kang, Richard I. Sherwood, Amira Barkal, Tatsunori Hashimoto, Logan Engstrom, David K. Gifford
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0103617

Approximating a Giving Up Smoking Dynamic on Adolescent Nicotine Dependence in Fractional Order
Cited by: 9
Author(s): Anwar Zeb, Gul Zaman, Vedat Suat Ertürk, Baha Alzalg, Faisal Yousafzai, M. Rashid Khan
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0167358

Natural and Undetermined Sudden Death: Value of Post-Mortem Genetic Investigation
Cited by: 57
Author(s): O. Londono Sanchez, Óscar Campuzano, Anna Fernández-Falgueras, Geòrgia Sarquella-Brugada, Sergi César, Irene Mademont, Jesús Matés, Alexandra Pérez‐Serra, Mònica Coll, Fernando Pico, Anna Iglesias, Coloma Tirón, Catarina Allegue, Esther Carro, María Ángeles Gallego, Carles Ferrer-Costa, Narcís Bardalet, Juan Carlos Borondo, Albert Vingut, Elena Arbelo, Josép Brugada, J Castellà, Jordi Medallo, Ramón Brugada
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0199924

Personality and social support as determinants of entrepreneurial intention. Gender differences in Italy
Cited by: 71
Author(s): Monica Molino, Valentina Dolce, Claudio Giovanni Cortese, Chiara Ghislieri
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0184436

Beyond group engagement: Multiple pathways from encounters with the police to cooperation and compliance in Northern Ireland
Cited by: 11
Author(s): Samuel Pehrson, Lee Devaney, Dominic Bryan, Danielle Blaylock
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0137811

Macroecology of Australian Tall Eucalypt Forests: Baseline Data from a Continental-Scale Permanent Plot Network
Cited by: 29
Author(s): Samuel W. Wood, Lynda D. Prior, Helen C. Stephens, David M. J. S. Bowman
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0071933

Impact of Hfq on Global Gene Expression and Intracellular Survival in Brucella melitensis
Cited by: 44
Author(s): Mingquan Cui, Tongkun Wang, Jie Xu, Ke Yuan, Xinying Du, Xitong Yuan, Zhoujia Wang, Chang Gong, Yubin Zhuang, Shuangshuang Lei, Xiao Su, Xuesong Wang, Liuyu Huang, Zhijun Zhong, Guangneng Peng, Junfa Yuan, Zeliang Chen, Yufei Wang
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0177014

A global analysis of CNVs in swine using whole genome sequence data and association analysis with fatty acid composition and growth traits
Cited by: 32
Author(s): Manuel Revilla, Anna Puig-Oliveras, Anna Castelló, Daniel Crespo-Piazuelo, E. Paludo, Ana Fernández, María Ballester, Josep María Folch
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0201893

Entrepreneurship, intrapreneurship and scientific mobility: The Spanish case
Cited by: 9
Author(s): Pedro Aceituno Aceituno, Joaquín Danvila-del-Valle, Abel González García, Carlos Bousoño-Calzón
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0189618

Targeted next-generation sequencing provides novel clues for associated epilepsy and cardiac conduction disorder/SUDEP
Cited by: 26
Author(s): Mònica Coll, Pasquale Striano, Carles Ferrer-Costa, Óscar Campuzano, Jesús Matés, Bernat del Olmo, Anna Iglesias, Alexandra Pérez‐Serra, Irene Mademont, Fernando Pico, Antonio Oliva, Ramón Brugada
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0119946

Colorectal Adenomas Contain Multiple Somatic Mutations That Do Not Coincide with Synchronous Adenocarcinoma Specimens
Cited by: 10
Author(s): José P. Vaqué, Nerea Martínez, Ignacio Varela, Fidel Fernández Fernández, Marta Mayorga, Sophia Derdak, Sergi Beltrán, Thaidy Moreno, Carmen Almaráz, G. de las Heras, Mònica Bayés, Marta Gut, Javier Crespo, Miguel Á. Piris
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0067715

Point Charges Optimally Placed to Represent the Multipole Expansion of Charge Distributions
Cited by: 26
Author(s): Ramu Anandakrishnan, Charles J. Baker, Shahrokh Izadi, Alexey V. Onufriev
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0068104

ECO: A Generic Eutrophication Model Including Comprehensive Sediment-Water Interaction
Cited by: 29
Author(s): J.G.C. Smits, J.K.L. van Beek
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0200756

Role of genetic and electrolyte abnormalities in prolonged QTc interval and sudden cardiac death in end-stage renal disease patients
Cited by: 10
Author(s): Mònica Coll, Carles Ferrer-Costa, Sara Pich, Catarina Allegue, Emilio Rodrigo, Gema Fernández‐Fresnedo, P.De La Barreda, Jesús Matés, Angel Luis Martinez De Francisco, Israel Parra Ortega, Anna Iglesias, Óscar Campuzano, Eduardo Salas, Manuel Arias, Ramón Brugada
Software Mentions: 1
Published: over 6 years ago

10.1038/s41420-020-00390-z

ABCA8-mediated efflux of taurocholic acid contributes to gemcitabine insensitivity in human pancreatic cancer via the S1PR2-ERK pathway
Cited by: 14
Author(s): Chunmei Yang, Hui Yuan, Jinyang Gu, Dengfei Xu, Mingwei Wang, Jie Qiao, Xi Yang, Jian Zhang, Ming Yao, Jianren Gu, Hong Tu, Yu Gan
Software Mentions: 1
Published: almost 4 years ago

10.1016/j.celrep.2020.02.058

The GATA Transcription Factor Gaf1 Represses tRNAs, Inhibits Growth, and Extends Chronological Lifespan Downstream of Fission Yeast TORC1
Cited by: 30
Author(s): María Rodríguez-López, Suam Gonzalez, Olivia Hillson, Edward Tunnacliffe, Sandra Codlin, Juan Jiménez, Jürg Bähler, Charalampos Rallis
Software Mentions: 1
Published: over 4 years ago

10.1016/j.crfs.2021.03.004

Crust treatments to reduce bread staling
Cited by: 11
Author(s): Yi Chen, Theodoros Gavaliatsis, Simon Kuster, Christian Städeli, Peter Fischer, Erich J. Windhab
Software Mentions: 1
Published: almost 4 years ago

10.1016/j.dib.2020.106050

Gradient magnetometer dataset and MATLAB numerical code for simulating buried firearms at a controlled field site
Cited by: 1
Author(s): Kennedy O. Doro, Elijah Achuoth Deng, Carl‐Georg Bank
Software Mentions: 1
Published: over 4 years ago

10.1016/j.ydbio.2016.05.006

The cardiac-restricted protein ADP-ribosylhydrolase-like 1 is essential for heart chamber outgrowth and acts on muscle actin filament assembly
Cited by: 21
Author(s): Stuart J. Smith, Norma Towers, José W. Saldanha, Catherine A. Shang, Mahmood, W.R. Taylor, Timothy J. Mohun
Software Mentions: 1
Published: over 8 years ago

10.1002/ece3.1959

Gillespie eco‐evolutionary models ( <scp>GEM</scp> s) reveal the role of heritable trait variation in eco‐evolutionary dynamics
Cited by: 31
Author(s): John P. DeLong, Jean P. Gibert
Software Mentions: 1
Published: almost 9 years ago

10.3390/e22101089

Some Classical and Quantum Aspects of Gravitoelectromagnetism
Cited by: 5
Author(s): G. Papini
Software Mentions: 1
Published: about 4 years ago

10.3390/e20090715

Evaluating Sustainability of Regional Water Resources Based on Improved Generalized Entropy Method
Cited by: 13
Author(s): Zhang Ming, Jinghong Zhou, Runjuan Zhou
Software Mentions: 1
Published: about 6 years ago

10.1289/ehp.10581

Genetic Variants Associated with Arsenic Susceptibility: Study of Purine Nucleoside Phosphorylase, Arsenic (+3) Methyltransferase, and Glutathione <i>S</i> -Transferase Omega Genes
Cited by: 87
Author(s): Sujata De Chaudhuri, Pritha Ghosh, Nilendu Sarma, Papiya Majumdar, Tanmoy Jyoti Sau, Santanu Basu, Susanta Roychoudhury, Kunal Ray, Ashok K. Giri
Software Mentions: 1
Published: over 16 years ago

10.1140/epjc/s10052-020-08725-x

Hunting down the X17 boson at the CERN SPS
Cited by: 12
Author(s): E. Depero, Yu. Andreev, D. Banerjee, J. Bernhard, V.E. Burtsev, N. Charitonidis, A.G. Chumakov, D. Cooke, P. Crivelli, A. Dermenev, S.V. Donskov, R. R. Dusaev, T. Enik, A. Feshchenko, В. Фролов, A. Gardikiotis, S. Gerassimov, S. Girod, S. Gninenko, M. Hösgen, В. Качанов, A. Karneyeu, G. D. Kekelidze, B. Ketzer, D. Kirpichnikov, M. Kirsanov, V.N. Kolosov, I. Konorov, Sergey Kovalenko, V. A. Kramarenko, L. Kravchuk, N. Krasnikov, S. Kuleshov, Valery E. Lyubovitskij, V. Lysan, V. Matveev, Yu.V. Mikhailov, L. Molina Bueno, D.V. Peshekhonov, V.A. Polyakov, B. Radics, R. A. Rojas, A. Rubbia, V.D. Samoylenko, Dmitry G. Shchukin, H. Sieber, V. O. Tikhomirov, vI. Tlisova, D. Tlisov, A. Toropin, A. Yu. Trifonov, B. I. Vasilishin, G. A. Vasquez, P. Volkov, V. Volkov, P. Ulloa
Software Mentions: 1
Published: almost 4 years ago

10.12688/f1000research.16252.3

Improved inference of chromosome conformation from images of labeled loci
Cited by: 0
Author(s): Benjamin Ross, James C. Costello
Software Mentions: 1
Published: over 5 years ago

10.1093/femsle/fnaa107

The transcription factor Leu3 shows differential binding behavior in response to changing leucine availability
Cited by: 1
Author(s): Christoph Sebastian Börlin, Jens Nielsen, Verena Siewers
Software Mentions: 1
Published: over 4 years ago

10.1007/s12223-021-00892-y

Systems biology and metabolic engineering of Rhodococcus for bioconversion and biosynthesis processes
Cited by: 10
Author(s): Eva Donini, Andrea Firrincieli, Martina Cappelletti
Software Mentions: 1
Published: over 3 years ago

10.3389/fbioe.2015.00199

Systems Biology Approaches to Understand Natural Products Biosynthesis
Cited by: 7
Author(s): Cuauhtémoc Licona-Cassani, Pablo Cruz-Morales, Ángel Manteca, Francisco Barona‐Gómez, Lars K. Nielsen, Esteban Marcellin
Software Mentions: 1
Published: almost 9 years ago

10.3389/fcell.2020.566702

Genome-Scale Metabolic Modeling for Unraveling Molecular Mechanisms of High Threat Pathogens
Cited by: 17
Author(s): Mustafa Sertbaş, Kutlu Ö. Ülgen
Software Mentions: 1
Published: about 4 years ago

10.1155/2013/360678

Gene Regulation, Modulation, and Their Applications in Gene Expression Data Analysis
Cited by: 23
Author(s): Mario Flores, Tzu Hung Hsiao, Yi-Chang Chiu, Eric Y. Chuang, Yufei Huang, Yidong Chen
Software Mentions: 1
Published: over 11 years ago

10.3389/fcimb.2019.00144

Modeling Host-Pathogen Interaction to Elucidate the Metabolic Drug Response of Intracellular Mycobacterium tuberculosis
Cited by: 18
Author(s): Rienk A. Rienksma, Peter J. Schaap, Vítor A. P. Martins dos Santos, María Suárez-Diez
Software Mentions: 1
Published: over 5 years ago

10.3389/fnhum.2013.00225

Directionality in distribution and temporal structure of variability in skill acquisition
Cited by: 36
Author(s): Masaki Abe, Dagmar Sternad
Software Mentions: 1
Published: almost 12 years ago

10.3389/fimmu.2018.00636

Evaluating the Genetics of Common Variable Immunodeficiency: Monogenetic Model and Beyond
Cited by: 108
Author(s): Guillem de Valles-Ibáñez, Ana Esteve‐Solé, M. Piquer, Europa Azucena González-Navarro, Jessica Hernández-Rodríguez, Hafid Laayouni, Eva González‐Roca, Ana María Plaza-Martin, Àngela Deyà‐Martínez, Andrea Martín-Nalda, Mónica Martínez-Gallo, Marina García-Prat, Lucía del Pino Molina, Ivon Cuscó, Marta Codina‐Solà, Laura Batlle-Masó, Manuel Solís-Moruno, Tomàs Marquès-Bonet, Elena Bosch, Eduardo López‐Granados, Juan I. Aróstegui, Pere Soler‐Palacín, Roger Colobran, Jordi Yagüe, Laia Alsina, Manel Juan, Ferrán Casals
Software Mentions: 1
Published: over 6 years ago

10.3389/fimmu.2015.00538

Extensive T-Cell Epitope Repertoire Sharing among Human Proteome, Gastrointestinal Microbiome, and Pathogenic Bacteria: Implications for the Definition of Self
Cited by: 24
Author(s): Robert D. Bremel, E. Jane Homan
Software Mentions: 1
Published: about 9 years ago

10.3389/fmicb.2017.00534

Genome-Scale Reconstruction of the Metabolic Network in Oenococcus oeni to Assess Wine Malolactic Fermentation
Cited by: 31
Author(s): Sebastián N. Mendoza, Paola Cañón, Ángela Contreras, Magdalena Ribbeck, Eduardo Agosín
Software Mentions: 1
Published: over 7 years ago

10.3389/fmicb.2021.695517

Genome-Wide Transcription Factor DNA Binding Sites and Gene Regulatory Networks in Clostridium thermocellum
Cited by: 1
Author(s): Skyler D. Hebdon, Alida T. Gerritsen, Yi-Pei Chen, Joan G Marcano, Katherine Chou
Software Mentions: 1
Published: about 3 years ago

10.3389/fncir.2013.00206

Animation of natural scene by virtual eye-movements evokes high precision and low noise in V1 neurons
Cited by: 39
Author(s): Pierre Yves Baudot, Manuel Levy, Olivier Marre, Cyril Monier, Marc Pananceau, Yves Frégnac
Software Mentions: 1
Published: almost 12 years ago

10.3389/fped.2021.704580

Early Identification of Prolonged QT Interval for Prevention of Sudden Infant Death
Cited by: 1
Author(s): Geòrgia Sarquella-Brugada, Óscar Garcı́a-Algar, M.D.C. Beato Zambrano, Anna Fernández-Falgueres, Sebastian Sailer, Sergi César, Giorgia Sebastiani, Julio Martí‐Almor, Esther Aurensanz, José Cruzalegui, Erika Fernanda Merchan, Mònica Coll, Alexandra Pérez‐Serra, Bernat del Olmo, Victoria Fiol, Anna Iglesias, Carles Ferrer-Costa, Marta Puigmulé, Laura López, Fernando Pico, Elena Arbelo, Paloma Jordà, Josép Brugada, Ramón Brugada, Óscar Campuzano
Software Mentions: 1
Published: over 3 years ago

10.3389/fphar.2015.00107

Quantitative global sensitivity analysis of a biologically based dose-response pregnancy model for the thyroid endocrine system
Cited by: 21
Author(s): Annie Lumen, Kevin McNally, Nysia I. George, Jeffrey W. Fisher, George Loizou
Software Mentions: 1
Published: over 9 years ago

10.3389/fpls.2015.00147

Large genetic screens for gynogenesis and androgenesis haploid inducers in Arabidopsis thaliana failed to identify mutants
Cited by: 10
Author(s): Virginie Portemer, Charlotte Rolny, Alexia Guillebaux, Raphaël Mercier
Software Mentions: 1
Published: over 9 years ago

10.3389/fpls.2016.01795

Modeling Rice Metabolism: From Elucidating Environmental Effects on Cellular Phenotype to Guiding Crop Improvement
Cited by: 17
Author(s): Meiyappan Lakshmanan, C. Y. Maurice Cheung, Bijayalaxmi Mohanty, Dong-Yup Lee
Software Mentions: 1
Published: almost 8 years ago

10.3389/fpsyg.2020.01909

The Configurations of Informal Institutions to Promote Men’s and Women’s Entrepreneurial Activities
Cited by: 2
Author(s): Danish Junaid, Amit Yadav, Farman Afzal, Imran Ahmed Shah, Bharanidharan Shanmugam, Mirjam Jonkman, Sami Azam, Friso De Boer
Software Mentions: 1
Published: over 4 years ago

10.3389/fpubh.2020.00073

WOmen's Action for Mums and Bubs (WOMB) Trial Protocol: A Non-randomized Stepped Wedge Implementation Trial of Participatory Women's Groups to Improve the Health of Aboriginal and Torres Strait Islander Mothers and Children in Australia
Cited by: 3
Author(s): Karen Carlisle, Catrina Felton‐Busch, Yvonne Cadet‐James, Judy Taylor, Ross Bailie, Jane Farmer, Megan Passey, Veronica Matthews, Emily Callander, Rebecca Evans, Janet Kelly, Robyn Preston, Michelle Redman-MacLaren, Haylee Fox, Adrian Esterman, Merrick Zwarenstein, Sarah Larkins
Software Mentions: 1
Published: over 4 years ago

10.4155/fsoa-2018-0082

Activation of TAp73 and inhibition of TrxR by Verteporfin for improved cancer therapy in <i>TP53</i> mutant pancreatic tumors
Cited by: 13
Author(s): Pilar Acedo, Aristi P. Fernandes, Joanna Zawacka-Pankau
Software Mentions: 1
Published: almost 6 years ago

10.3390/genes11111292

Carbon Source Influence on Extracellular pH Changes along Bacterial Cell-Growth
Cited by: 14
Author(s): Rubén Sánchez-Clemente, Ma Isabel Guijo, Juan Nogales, Rafael Blasco
Software Mentions: 1
Published: about 4 years ago

10.1186/1297-9686-45-24

Impact of prior specifications in a shrinkage-inducing Bayesian model for quantitative trait mapping and genomic prediction
Cited by: 9
Author(s): Timo Knürr, Esa Läärä, Mikko J. Sillanpää
Software Mentions: 1
Published: over 11 years ago

10.1186/s12711-016-0206-0

Identification of genetic variation in the swine toll-like receptors and development of a porcine TLR genotyping array
Cited by: 8
Author(s): Alex Clop, Abe Huisman, Pieter Van As, A. Sharaf, Sophia Derdak, Armand Sánchez
Software Mentions: 1
Published: over 8 years ago

10.1186/s13059-014-0467-2

Allelic mapping bias in RNA-sequencing is not a major confounder in eQTL studies
Cited by: 67
Author(s): Nikolaos Panousis, María Gutiérrez‐Arcelus, Emmanouil T. Dermitzakis, Tuuli Lappalainen
Software Mentions: 1
Published: about 10 years ago

10.1186/s13059-017-1250-y

Genetic–epigenetic interactions in cis: a major focus in the post-GWAS era
Cited by: 101
Author(s): Catherine Do, Alyssa Shearer, Masako Suzuki, Mary Beth Terry, Joel Gelernter, John M. Greally, Benjamin Tycko
Software Mentions: 1
Published: over 7 years ago

10.1186/s13742-015-0078-1

Tentacle: distributed quantification of genes in metagenomes
Cited by: 9
Author(s): Fredrik Boulund, Anders Sjögren, Erik Kristiansson
Software Mentions: 1
Published: about 9 years ago

10.1186/s12955-021-01734-8

EQ-5D self-reported health in Barbados and Jamaica with EQ-5D-5L population norms for the English-speaking Caribbean
Cited by: 6
Author(s): Henry Bailey, Mathieu F. Janssen, Althea La Foucade, Girjanauth Boodraj, Marjorie Wharton, Philip Castillo
Software Mentions: 1
Published: over 3 years ago

10.1016/j.heliyon.2020.e04931

How has formal institutions influenced opportunity and necessity entrepreneurship? The case of brics economies
Cited by: 12
Author(s): Thomas Bilaliib Udimal, Mei Luo, E Liu, Nicholas Oppong Mensah
Software Mentions: 1
Published: about 4 years ago

10.1186/1748-5908-7-119

Advancing the application, quality and harmonization of implementation science measures
Cited by: 80
Author(s): Borsika Rabin, Peyton Purcell, Sana Naveed, Richard P. Moser, Michelle Henton, Enola K. Proctor, Ross C. Brownson, Russell E. Glasgow
Software Mentions: 1
Published: almost 12 years ago

10.1186/s13012-014-0193-x

The Society for Implementation Research Collaboration Instrument Review Project: A methodology to promote rigorous evaluation
Cited by: 107
Author(s): Cara C. Lewis, Cameo Stanick, Ruben G. Martinez, Bryan J. Weiner, Mimi Kim, Melanie Barwick, Katherine Anne Comtois
Software Mentions: 1
Published: almost 10 years ago

10.1107/S1600576715016520

A Rietveld refinement method for angular- and wavelength-dispersive neutron time-of-flight powder diffraction data
Cited by: 10
Author(s): Philipp Jacobs, Andreas Houben, W. Schweika, Andreì L. Tchougréeff, Richard Dronskowski
Software Mentions: 1
Published: about 9 years ago

10.1017/cts.2018.337

Online resources for dissemination and implementation science: Meeting demand and lessons learned
Cited by: 13
Author(s): Bryan Ford, Borsika Rabin, Elaine H. Morrato, Russell E. Glasgow
Software Mentions: 1
Published: about 6 years ago

10.1210/jendso/bvaa118

Minimizing Glucose Excursions (GEM) With Continuous Glucose Monitoring in Type 2 Diabetes: A Randomized Clinical Trial
Cited by: 20
Author(s): Daniel J. Cox, Tom Banton, Matthew Moncrief, Mark R. Conaway, Anne Diamond, Anthony L. McCall
Software Mentions: 1
Published: over 4 years ago

10.3390/polym10080857

Effect of Polymer Degradation on Polymer Flooding in Heterogeneous Reservoirs
Cited by: 38
Author(s): Xiankang Xin, Gaoming Yu, Zhangxin Chen, Keliu Wu, Xiaohu Dong, Zhouyuan Zhu
Software Mentions: 1
Published: over 6 years ago

10.3390/polym11081250

Parametric Analysis of Electrical Conductivity of Polymer-Composites
Cited by: 31
Author(s): Oladipo Folorunso, Yskandar Hamam, Rotimi Sadiku, Suprakas Sinha Ray, Gbolahan Joseph Adekoya
Software Mentions: 1
Published: over 5 years ago

10.1007/s00411-021-00895-w

Modelling and measurements of distributions in an adult human phantom undergoing proton scanning beam radiotherapy: lung- and prostate-located tumours
Cited by: 2
Author(s): Monika Puchalska
Software Mentions: 1
Published: over 3 years ago

10.1186/1748-717X-7-28

Neoadjuvant chemoradiation with Gemcitabine for locally advanced pancreatic cancer
Cited by: 86
Author(s): Daniel Habermehl, Kerstin A. Kessel, Thomas Welzel, Holger Hof, Amir Abdollahi, Frank Bergmann, Stefan Rieken, Jürgen Weitz, Jens Werner, Peter Schirmacher, Markus W. Büchler, Jürgen Debus, Stephanie E. Combs
Software Mentions: 1
Published: over 12 years ago

10.1186/s13014-017-0895-8

Comparative study of the effects of different radiation qualities on normal human breast cells
Cited by: 11
Author(s): Dajana Juerß, Monique Zwar, U. Giesen, R. Nolte, Stephan Kriesen, G. Baiocco, Monika Puchalska, Marc-Jan van Goethem, Katrin Manda, Guido Hildebrandt
Software Mentions: 1
Published: about 7 years ago

10.1186/s40900-017-0058-y

A framework for public involvement at the design stage of NHS health and social care research: time to develop ethically conscious standards
Cited by: 60
Author(s): Raksha Pandya-Wood, Duncan Barron, Jim Elliott
Software Mentions: 1
Published: over 7 years ago

Projects: bioconductor: GEM

Papers Mentioning GEM 317