bioconductor: FlowSOM | Projects | Ecosyste.ms: Papers

10.1172/jci.insight.151571

CD8+PD-L1+CXCR3+ polyfunctional T cell abundances are associated with survival in critical SARS-CoV-2–infected patients
Cited by: 15
Author(s): Lucille Adam, Pierre Rosenbaum, Paul Quentric, Christophe Parizot, Olivia Bonduelle, Noëlline Guillou, Aurélien Corneau, Karim Dorgham, Makoto Miyara, Charles‐Édouard Luyt, Amélie Guihot, Guy Gorochov, Christophe Combadière, Béhazine Combadière
Software Mentions: 2
Published: about 3 years ago

10.1371/journal.ppat.1009721

Characterization of low-density granulocytes in COVID-19
Cited by: 42
Author(s): Luz E. Cabrera, Pirkka T. Pekkarinen, Maria Alander, Kirsten Nowlan, Ngoc-anh A. Nguyen, Suvi T. Jokiranta, Suvi Kuivanen, Anu Patjas, Sointu Mero, Sari H. Pakkanen, Santtu Heinonen, Anu Kantele, Olli Vapalahti, Eliisa Kekäläinen, Tomas Strandin
Software Mentions: 2
Published: over 3 years ago

10.3390/ijms21072323

Detection of Rare Objects by Flow Cytometry: Imaging, Cell Sorting, and Deep Learning Approaches
Cited by: 27
Author(s): Denis V. Voronin, Anastasiia Kozlova, Roman A. Verkhovskii, А. V. Ermakov, Mikhail A. Makarkin, Olga A. Inozemtseva, Daniil N. Bratashov
Software Mentions: 2
Published: over 4 years ago

10.21203/rs.3.rs-162289/v1

CD8 T cells compensate for impaired humoral immunity in COVID-19 patients with hematologic cancer
Cited by: 20
Author(s): Alexander C. Huang, Erin Bange, Nicholas Han, E. Paul Wileyto, Justin Kim, Sigrid Gouma, James P. Robinson, Allison R. Greenplate, Florence Porterfield, Olutosin Owoyemi, Karan Naik, Cathy Zheng, Michael Galantino, A.R. Weisman, C.A.G. Ittner, Emily M. Kugler, Amy E. Baxter, Madison E. Weirick, Christopher M. McAllister, N. Esther Babady, Anita Kumar, Adam Widman, Susan DeWolf, Sawsan R. Boutemine, Charlotte A. Roberts, Krista R Budzik, Susan Tollett, Carla Wright, Tara Perloff, Lin Sun, Divij Mathew, Josephine R. Giles, Derek A. Oldridge, Jing Wu, Cécile Alanio, Sharon Adamski, Laura A. Vella, Samuel J Kerr, Jordana B. Cohen, Randall A. Oyer, Ryan Massa, Ivan Maillard, Kara N. Maxwell, P. Maslak, Robert H. Vonderheide, Jedd D. Wolchok, Scott E. Hensley, E. John Wherry, Nuala J. Meyer, Angela DeMichele, Santosha A. Vardhana, Ravinder Mamtani, Oluwatosin Oniyide, R.S. Agyekum, Thomas Dunn, T.K. Jones, H.M. Giannini, Alfred L. Garfall, J Reilly
Software Mentions: 2
Published: almost 4 years ago

10.3390/ijms22136820

Macrophages Compensate for Loss of Protein Tyrosine Phosphatase N2 in Dendritic Cells to Protect from Elevated Colitis
Cited by: 3
Author(s): Larissa Hering, Egle Katkeviciutė, Marlene Schwarzfischer, Anna Niechcial, Julianne B. Riggs, Marcin Wawrzyniak, Kirstin Atrott, M Van de Sande, Silvia Lang, Burkhard Becher, Gerhard Rogler, Michael Scharl, Marianne R. Spalinger
Software Mentions: 2
Published: over 3 years ago

10.3390/cancers13112630

Immune Monitoring in Melanoma and Urothelial Cancer Patients Treated with Anti-PD-1 Immunotherapy and SBRT Discloses Tumor Specific Immune Signatures
Cited by: 2
Author(s): Annabel Meireson, Simon Tavernier, Sofie Van Gassen, Nora Sundahl, Annelies Demeyer, Mathieu Spaas, Vibeke Krüse, Liesbeth Ferdinande, Jo Van Dorpe, Benjamin Hennart, Delphine Allorge, Filomeen Haerynck, Karel Decaestecker, Sylvie Rottey, Yvan Saeys, Piet Ost, Liève Brochez
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-020-69358-4

Single-cell mass cytometry on peripheral blood identifies immune cell subsets associated with primary biliary cholangitis
Cited by: 12
Author(s): Jin Sung Jang, Brian D. Juran, Kevin Y. Cunningham, Vinod Kumar Gupta, Young Min Son, Ju Dong Yang, Ahmad H. Ali, Elizabeth Ann L. Enninga, Jaeyun Sung, Konstantinos N. Lazaridis
Software Mentions: 2
Published: over 4 years ago

10.1038/s41598-021-91816-w

Extended live-cell barcoding approach for multiplexed mass cytometry
Cited by: 7
Author(s): Muharrem Müftüoǧlu, Li Li, Shaoheng Liang, Duncan H. Mak, Angelique Lin, Junxiang Fang, Jared K. Burks, Ken Chen, Michael Andreeff
Software Mentions: 2
Published: over 3 years ago

10.1126/science.abc8511

Deep immune profiling of COVID-19 patients reveals distinct immunotypes with therapeutic implications
Cited by: 1,181
Author(s): Divij Mathew, Josephine R. Giles, Amy E. Baxter, Derek A. Oldridge, Allison R. Greenplate, Jennifer E. Wu, Cécile Alanio, Leticia Kuri-Cervantes, María Betina Pampena, Kurt D’Andrea, Sasikanth Manne, Zeyu Chen, Yinghui Huang, John P. Reilly, A.R. Weisman, C.A.G. Ittner, Oliva Kuthuru, Jeanette Dougherty, Kito Nzingha, Nicholas Han, Justin Kim, Ajinkya Pattekar, Eileen Goodwin, Elizabeth M. Anderson, Madison E. Weirick, Sigrid Gouma, Claudia P. Arevalo, Marcus J. Bolton, Fang Chen, Simon F. Lacey, Holly Ramage, Sara Cherry, Scott E. Hensley, Sokratis A. Apostolidis, Alexander C. Huang, Laura A. Vella, Michael R. Betts, Nuala J. Meyer, E. John Wherry, Zahidul Alam, Mary M. Addison, Katelyn T. Byrne, Aditi Chandra, Hélène C. Descamps, Yaroslav Kaminskiy, Jacob T. Hamilton, Julia Han Noll, Dalia K. Omran, Eric Perkey, Elizabeth M. Prager, Dana Pueschl, Jennifer Shah, Jake S. Shilan, Ashley Vanderbeck
Software Mentions: 2
Published: about 4 years ago

10.1016/j.stemcr.2021.04.004

Antitumor effects of iPSC-based cancer vaccine in pancreatic cancer
Cited by: 20
Author(s): Xiaoming Ouyang, Yu Liu, Yang Zhou, Jing Guo, Tzu-Tang Wei, Chun Li, Bomi Lee, Binbin Chen, Angela Zhang, Kerriann M. Casey, Lin Wang, Nigel G. Kooreman, Aida Habtezion, Edgar G. Engleman, Joseph C. Wu
Software Mentions: 2
Published: over 3 years ago

10.1038/s41398-020-00992-2

Single-cell mass cytometry of microglia in major depressive disorder reveals a non-inflammatory phenotype with increased homeostatic marker expression
Cited by: 49
Author(s): Chotima Böttcher, Camila Fernández-Zapata, Gijsje Snijders, Stephan Schlickeiser, Marjolein Sneeboer, Désirée Kunkel, Lot de Witte, Josef Priller
Software Mentions: 2
Published: about 4 years ago

10.1371/journal.pcbi.1005112

Cytofkit: A Bioconductor Package for an Integrated Mass Cytometry Data Analysis Pipeline
Cited by: 262
Author(s): Hao Chen, Mai Chan Lau, Michael Wong, Evan W. Newell, Michael Poidinger, Jinmiao Chen
Software Mentions: 2
Published: about 8 years ago

10.1084/jem.20202001

Human marginal zone B cell development from early T2 progenitors
Cited by: 40
Author(s): Thomas J Tull, Michael J Pitcher, William Guesdon, Jacqueline Hy Siu, Cristina Lebrero‐Fernández, Yuan Zhao, Nedyalko Petrov, Susanne Heck, Richard J. Ellis, Pawan Dhami, Ulrich D. Kadolsky, Michelle Kleeman, Yogesh Kamra, David Fear, Susan John, Wayel Jassem, Richard Groves, Jeremy Sanderson, Michael G. Robson, David D’Cruz, Mats Bemark, Jo Spencer
Software Mentions: 2
Published: over 3 years ago

10.3390/vaccines9060555

Targeted Delivery of BZLF1 to DEC205 Drives EBV-Protective Immunity in a Spontaneous Model of EBV-Driven Lymphoproliferative Disease
Cited by: 3
Author(s): Elshafa H. Ahmed, Eric Brooks, Shelby Sloan, Sarah Schlotter, Frankie Jeney, Claire Hale, Charlene Mao, Xiaoli Zhang, Eric McLaughlin, Polina Shindiapina, Salma Shire, Manjusri Das, Alexander Prouty, Gerard Lozanski, Admasu Tenna Mamuye, Tamrat Abebe, Lapo Alinari, Michael A. Caligiuri, Robert A. Baiocchi
Software Mentions: 2
Published: over 3 years ago

10.1186/s12974-020-02069-9

Microglial deletion and inhibition alleviate behavior of post-traumatic stress disorder in mice
Cited by: 48
Author(s): Shuoshuo Li, Yuhe Liao, Yuan Dong, Xiaoheng Li, Jun Li, Yong Cheng, Jinbo Cheng, Zengqiang Yuan
Software Mentions: 2
Published: almost 4 years ago

10.1136/jitc-2020-002181

Deep immune profiling reveals targetable mechanisms of immune evasion in immune checkpoint inhibitor-refractory glioblastoma
Cited by: 39
Author(s): Erin F. Simonds, Edbert D Lu, O. Badillo, Shokoufeh Karimi, Eric V Liu, Whitney Tamaki, Chiara Rancan, Kira Downey, Jacob Stultz, Mala Sinha, Lauren McHenry, Nicole Nasholm, Pavlina Chuntova, Anders Sundström, Vassilis Genoud, Shilpa Shahani, Leo D. Wang, Christine E. Brown, Paul R Walker, Fredrik J. Swartling, Lawrence Fong, Hideho Okada, William A. Weiss, Mats Hellström
Software Mentions: 2
Published: over 3 years ago

10.3389/fimmu.2020.621222

Persistent Systemic Inflammation in Patients With Severe Burn Injury Is Accompanied by Influx of Immature Neutrophils and Shifts in T Cell Subsets and Cytokine Profiles
Cited by: 32
Author(s): Patrick P.G. Mulder, Marcel Vlig, B.K.H.L. Boekema, Matthea M. Stoop, Anouk Pijpe, Paul P. M. van Zuijlen, Evelien de Jong, Bram van Cranenbroek, Irma Joosten, Hans J. P. M. Koenen, Magda M. W. Ulrich
Software Mentions: 2
Published: almost 4 years ago

10.3389/fimmu.2020.578176

Method for the Analysis of the Tumor Microenvironment by Mass Cytometry: Application to Chronic Lymphocytic Leukemia
Cited by: 10
Author(s): Susanne Gonder, Iria Fernandez Botana, Marina Wierz, Giulia Pagano, Ernesto Gargiulo, Antonio Cosma, Etienne Moussay, Jérôme Paggetti, Anne Largeot
Software Mentions: 2
Published: about 4 years ago

10.3389/fbioe.2020.526814

Multiparametric Color Tendency Analysis (MCTA): A Method to Analyze Several Flow Cytometry Labelings Simultaneously
Cited by: 0
Author(s): Andréa Henriques-Pons, Carine Priscila Beatrici, Juan Camilo Sánchez‐Arcila, Fabrício Silva
Software Mentions: 2
Published: about 4 years ago

10.1002/eji.202048841

Monocytes promote UV‐induced epidermal carcinogenesis
Cited by: 5
Author(s): Iva Lelios, Sebastian A. Stifter, Virginia Cecconi, Ekaterina Petrova, Mirjam Lutz, Dilay Cansever, Sebastian G. Utz, Burkhard Becher, Maries van den Broek, Melanie Greter
Software Mentions: 2
Published: over 3 years ago

10.3389/fimmu.2020.595039

Experimental Nanovaccine Offers Protection Against Repeat Exposures to Trypanosoma cruzi Through Activation of Polyfunctional T Cell Response
Cited by: 7
Author(s): Imran H. Chowdhury, Nandadeva Lokugamage, Nisha Garg
Software Mentions: 2
Published: almost 4 years ago

10.3389/fimmu.2021.726428

CyTOF-Enabled Analysis Identifies Class-Switched B Cells as the Main Lymphocyte Subset Associated With Disease Relapse in Children With Idiopathic Nephrotic Syndrome
Cited by: 15
Author(s): Miguel Fribourg, Michela Cioni, G. M. Ghiggeri, Chiara Cantarelli, Jeremy S. Leventhal, Kelly L. Budge, Sofia Bin, Leonardo V. Riella, Manuela Colucci, Marina Vivarelli, Andrea Angeletti, Laura Perin, Paolo Cravedi
Software Mentions: 2
Published: about 3 years ago

10.3389/fimmu.2018.00380

Heterologous Prime-Boost Combinations Highlight the Crucial Role of Adjuvant in Priming the Immune System
Cited by: 16
Author(s): Annalisa Ciabattini, Elena Pettini, Fabio Fiorino, Simone Lucchesi, Gabiria Pastore, Jlenia Brunetti, Francesco Santoro, Peter Andersen, Luisa Bracci, Gianni Pozzi, Donata Medaglini
Software Mentions: 1
Published: over 6 years ago

10.3389/fimmu.2020.00463

Editorial: Application of Cytometry in Primary Immunodeficiencies
Cited by: 4
Author(s): Tomáš Kalina, Roshini S. Abraham, Marta Rizzi, Mirjam van der Burg
Software Mentions: 1
Published: over 4 years ago

10.3390/cancers13040785

Cross-Reactivity and Functionality of Approved Human Immune Checkpoint Blockers in Dogs
Cited by: 12
Author(s): Stanislav Pantelyushin, Elisabeth Ranninger, Diego Guerrera, Gregor Hütter, Caroline Maake, Enni Markkanen, Regula Bettschart‐Wolfensberger, Carla Rohrer Bley, Heinz Läubli, Johannes vom Berg
Software Mentions: 1
Published: almost 4 years ago

10.1136/jitc-2019-000473

CyTOF mass cytometry reveals phenotypically distinct human blood neutrophil populations differentially correlated with melanoma stage
Cited by: 28
Author(s): Yanfang Peipei Zhu, Tobias Eggert, Daniel J. Araujo, Pandurangan Vijayanand, Christian Ottensmeier, Catherine C. Hedrick
Software Mentions: 1
Published: about 4 years ago

10.1002/advs.202000224

Trajectory and Functional Analysis of PD‐1high CD4+CD8+ T Cells in Hepatocellular Carcinoma by Single‐Cell Cytometry and Transcriptome Sequencing
Cited by: 53
Author(s): Bo Zheng, Dongfang Wang, Xinyao Qiu, Guijuan Luo, Tong Wu, Shuai Yang, Zhixuan Li, Yanjing Zhu, Shan Wang, Rui Wu, Chengjun Sui, Ziqi Gu, Siyun Shen, Seogsong Jeong, Xuan Wu, Jin Gu, Hongyang Wang, Lei Chen
Software Mentions: 1
Published: over 4 years ago

10.1016/j.jim.2017.11.008

Comparison of CyTOF assays across sites: Results of a six-center pilot study
Cited by: 44
Author(s): Holden Maecker, Gerlinde Obermoser, Craig Fenwick, Katja Kleinstuber, Narges Rashidi, John McNevin, Allison Nau, Lisa E. Wagar, Virginie Rozot, Mark M. Davis, Stephen C. DeRosa, Giuseppe Pantaleo, Thomas J. Scriba, Bruce D. Walker, Lars Rønn Olsen, Holden T. Maecker
Software Mentions: 1
Published: almost 7 years ago

10.3390/jcm10040823

Skeletal Muscle Subpopulation Rearrangements upon Rhabdomyosarcoma Development through Single-Cell Mass Cytometry
Cited by: 3
Author(s): Lucia Lisa Petrilli, Federica Riccio, Giulio Giuliani, Alessandro Palma, Cesare Gargioli, Simone Vumbaca, Monika Faron, G. Palmieri, Luca Pasquini, Francesca Sacco, Luisa Castagnoli, Claudia Fuoco
Software Mentions: 1
Published: almost 4 years ago

10.3390/ijms21010170

Single Cell Mass Cytometry Revealed the Immunomodulatory Effect of Cisplatin Via Downregulation of Splenic CD44+, IL-17A+ MDSCs and Promotion of Circulating IFN-γ+ Myeloid Cells in the 4T1 Metastatic Breast Cancer Model
Cited by: 28
Author(s): J. Balog, László Hackler, Anita Kovács, Patrícia Neuperger, Róbert Alföldi, L Nagy, László G. Puskás, Gábor J. Szebeni
Software Mentions: 1
Published: almost 5 years ago

10.3389/fimmu.2021.669965

Autologous Dendritic Cells in Combination With Chemotherapy Restore Responsiveness of T Cells in Breast Cancer Patients: A Single-Arm Phase I/II Trial
Cited by: 15
Author(s): David Bernal-Estévez, Mauren A. Ortíz Barbosa, Paola Ortíz-Montero, Claudia Cifuentes, Rodrigo Alberto Hoyos Sánchez, Carlos Parra-López
Software Mentions: 1
Published: over 3 years ago

10.1186/s13024-021-00458-z

Key role of the CCR2-CCL2 axis in disease modification in a mouse model of tauopathy
Cited by: 11
Author(s): Hila Ben-Yehuda, Michal Arad, Javier María Peralta Ramos, Efrat Sharon, Giulia Castellani, Shir Ferrera, Liora Cahalon, Sarah Phoebeluc Colaiuta, Tomer-Meir Salame, Michal Schwartz
Software Mentions: 1
Published: over 3 years ago

10.3389/fimmu.2021.719979

Single-Cell Proteomics Reveals the Defined Heterogeneity of Resident Macrophages in White Adipose Tissue
Cited by: 20
Author(s): Inês Félix, Heli Jokela, Joonas Karhula, Noora Kotaja, Eriika Savontaus, Marko Salmi, Pia Rantakari
Software Mentions: 1
Published: over 3 years ago

10.1186/s12974-019-1566-5

Zika virus encephalitis in immunocompetent mice is dominated by innate immune cells and does not require T or B cells
Cited by: 20
Author(s): Emina Hayashida, Zheng Lung Ling, Thomas Myles Ashhurst, Barney Viengkhou, So Ri Jung, Pattama Songkhunawej, Phillip K. West, Nicholas J. C. King, Markus Höfer
Software Mentions: 1
Published: about 5 years ago

10.1126/sciadv.abe0013

Massive clonal expansion of polycytotoxic skin and blood CD8 + T cells in patients with toxic epidermal necrolysis
Cited by: 20
Author(s): Axel-Patrice Villani, Aurore Rozières, Benoît Bensaïd, Klara Kristin Eriksson, Anne Mosnier, Floriane Albert, Virginie Mutez, Océane Brassard, Tugba Baysal, M. Tardieu, Omran Allatif, Floriane Fusil, Thibault Andrieu, D. Jullien, Valérie Dubois, C. Giannoli, Henri Gruffat, Marc Pallardy, François-Loı̈c Cosset, Audrey Nosbaum, Osami Kanagawa, Janet L. Maryanski, Daniel Yerly, Jean-François Nicolas, Marc Vocanson
Software Mentions: 1
Published: over 3 years ago

10.3389/fimmu.2021.647900

Sensing Acute Cellular Rejection in Liver Transplant Patients Using Liver-Derived Extracellular Particles: A Prospective, Observational Study
Cited by: 3
Author(s): Kaan Kamali, Moritz Schmelzle, Can Kamali, Philipp Brunnbauer, Katrin Splith, Annekatrin Leder, Nadja Berndt, Karl H. Hillebrandt, Nathanael Raschzok, Linda Feldbrügge, Matthäus Felsenstein, Joseph M. G. V. Gassner, Paul Viktor Ritschl, Georg Lurje, Wenzel Schöning, Christian Benzing, Johann Pratschke, Felix Krenzien
Software Mentions: 1
Published: over 3 years ago

10.3389/fimmu.2021.620596

Treg and Oligoclonal Expansion of Terminal Effector CD8+ T Cell as Key Players in Multiple Myeloma
Cited by: 8
Author(s): Douglas Joshua, Slavica Vučković, James Favaloro, Ka Hei Aleks Lau, Yang Shi, Christian Bryant, John Gibson, Phoebe Joy Ho
Software Mentions: 1
Published: over 3 years ago

10.3389/fimmu.2021.654094

Optimized Intracellular Staining Reveals Heterogeneous Cytokine Production Ability of Murine and Human Hematopoietic Stem and Progenitor Cells
Cited by: 3
Author(s): Shufeng Luo, Huiling Lin, Lan Zhu, Haitian Chen, Siqian Yang, Jin‐Heng Li, Mingyu Li, Limin Zheng, Chong Wu
Software Mentions: 1
Published: over 3 years ago

10.3389/fimmu.2020.01856

Protein Tyrosine Phosphatase Non-Receptor Type 2 Function in Dendritic Cells Is Crucial to Maintain Tissue Tolerance
Cited by: 12
Author(s): Larissa Hering, Egle Katkeviciutė, Marlene Schwarzfischer, Philipp Busenhart, Claudia Gottier, Dunja Mrdjen, Juliana Komuczki, Marcin Wawrzyniak, Silvia Lang, Kirstin Atrott, Burkhard Becher, Gerhard Rogler, Michael Scharl, Marianne R. Spalinger
Software Mentions: 1
Published: over 4 years ago

10.3390/cancers13081935

CD80 Expression on Tumor Cells Alters Tumor Microenvironment and Efficacy of Cancer Immunotherapy by CTLA-4 Blockade
Cited by: 11
Author(s): Julie Vackova, Ingrid Poláková, Shweta Dilip Johari, Michal Šmahel
Software Mentions: 1
Published: over 3 years ago

10.3389/fimmu.2021.691806

Inflammatory Skin Disorders: Monocyte-Derived Cells Take Center Stage
Cited by: 4
Author(s): Heena Mehta, Julianty Angsana, Robert Bissonnette, Ernesto J. Muñoz‐Elías, Marika Sarfati
Software Mentions: 1
Published: over 3 years ago

10.3389/fimmu.2020.570550

Maturation and Phenotypic Heterogeneity of Human CD4+ Regulatory T Cells From Birth to Adulthood and After Allogeneic Stem Cell Transplantation
Cited by: 9
Author(s): Tiago R. Matos, Masahiro Hirakawa, Ana Cristina Alho, Lars Neleman, Luís Graça, Jérôme Ritz
Software Mentions: 1
Published: almost 4 years ago

10.3389/fimmu.2018.02519

High-Dimensional Profiling Reveals Heterogeneity of the Th17 Subset and Its Association With Systemic Immunomodulatory Treatment in Non-infectious Uveitis
Cited by: 13
Author(s): Fleurieke H. Verhagen, Sanne Hiddingh, Rianne Rijken, Aridaman Pandit, Emmerik F A Leijten, Michel Olde Nordkamp, Ninette H. ten Dam-van Loon, Stefan Nierkens, Saskia M. Imhof, Joke H. de Boer, Timothy R. D. J. Radstake, Jonas J.W. Kuiper
Software Mentions: 1
Published: about 6 years ago

10.1186/s12940-020-00662-2

Immune biomarkers link air pollution exposure to blood pressure in adolescents
Cited by: 19
Author(s): Mary Prunicki, Nicholas Cauwenberghs, Jennifer Arthur Ataam, Hesam Movassagh, Juyong Brian Kim, Tatiana Kuznetsova, Joseph C. Wu, Holden T. Maecker, François Haddad, Kari Nadeau
Software Mentions: 1
Published: about 4 years ago

10.3389/fimmu.2019.02584

Mass Cytometry Reveals a Sustained Reduction in CD16+ Natural Killer Cells Following Chemotherapy in Colorectal Cancer Patients
Cited by: 8
Author(s): Diana Shinko, Helen M. McGuire, Connie I. Diakos, Nick Pavlakis, Stephen Clarke, Scott N. Byrne, Kellie A. Charles
Software Mentions: 1
Published: about 5 years ago

10.3389/fimmu.2019.01596

Mass Cytometry Discovers Two Discrete Subsets of CD39−Treg Which Discriminate MGUS From Multiple Myeloma
Cited by: 16
Author(s): Felix Marsh‐Wakefield, Annabel Kruzins, Helen M. McGuire, Yang Shi, Christian Bryant, Barbara Fazekas de St Groth, Najah T. Nassif, Scott N. Byrne, John Gibson, Christina Brown, Stephen Larsen, Derek McCulloch, Richard Boyle, Georgina J. Clark, Douglas Joshua, Phoebe Joy Ho, Slavica Vučković
Software Mentions: 1
Published: over 5 years ago

10.1186/s13058-021-01441-8

Circulating immune cell populations related to primary breast cancer, surgical removal, and radiotherapy revealed by flow cytometry analysis
Cited by: 8
Author(s): Sarah Cattin, Benoı̂t Fellay, Antonello Calderoni, Alexandre Christinat, Laura Negretti, Maira Biggiogero, Alberto Badellino, A. W. Schneider, Pelagia G. Tsoutsou, Alessandra Franzetti Pellanda, Curzio Rüegg
Software Mentions: 1
Published: over 3 years ago

10.7554/eLife.56879

Unsupervised machine learning reveals risk stratifying glioblastoma tumor cells
Cited by: 21
Author(s): Nalin Leelatian, Justine Sinnaeve, Akshitkumar M. Mistry, Sierra Barone, Asa Brockman, Kirsten E. Diggins, Allison R. Greenplate, Kyle D. Weaver, Reid C. Thompson, Lola B. Chambless, Bret C. Mobley, Rebecca A. Ihrie, Jonathan M. Irish
Software Mentions: 1
Published: over 4 years ago

10.3389/fimmu.2020.576743

Blockade of LAG-3 in PD-L1-Deficient Mice Enhances Clearance of Blood Stage Malaria Independent of Humoral Responses
Cited by: 6
Author(s): Raquel Furtado, Laurent Chorro, Natalie Zimmerman, Erik Guillen, Emily Spaulding, Shu Shien Chin, Johanna P. Daily, Grégoire Lauvau
Software Mentions: 1
Published: almost 4 years ago

10.1038/s41598-020-61489-y

Characterization of pulmonary immune responses to hyperoxia by high-dimensional mass cytometry analyses
Cited by: 11
Author(s): Dusan Hanidziar, Yasutaka Nakahori, Laura Cahill, David Gallo, Joshua Keegan, Jennifer Nguyen, Leo E. Otterbein, James A. Lederer, Simon C. Robson
Software Mentions: 1
Published: over 4 years ago

10.1002/cyto.a.23904

CytoNorm: A Normalization Algorithm for Cytometry Data
Cited by: 94
Author(s): Sofie Van Gassen, Brice Gaudillière, Martin S. Angst, Yvan Saeys, Nima Aghaeepour
Software Mentions: 1
Published: about 5 years ago

10.1038/s41408-019-0234-4

Mass cytometry dissects T cell heterogeneity in the immune tumor microenvironment of common dysproteinemias at diagnosis and after first line therapies
Cited by: 28
Author(s): Taxiarchis Kourelis, José C. Villasboas, Erik Jessen, Surendra Dasari, Angela Dispenzieri, Dragan Jevremović, Shaji Kumar
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0222912

Primary myelofibrosis marrow-derived CD14+/CD34- monocytes induce myelofibrosis-like phenotype in immunodeficient mice and give rise to megakaryocytes
Cited by: 8
Author(s): Taghi Manshouri, Srđan Verstovšek, David Harris, Ivo Veletić, Xiaorui Zhang, Sean M. Post, Carlos E. Bueso‐Ramos, Zeev Estrov
Software Mentions: 1
Published: about 5 years ago

10.3389/fimmu.2021.674532

Unbiased Screening Identifies Functional Differences in NK Cells After Early Life Psychosocial Stress
Cited by: 7
Author(s): Sara Fernandes, Neha D. Patil, Sophie B. Mériaux, Maud Thérésine, Claude P. Muller, Fleur A. D. Leenen, Martha M C Elwenspoek, Jacques Zimmer, Jonathan D. Turner
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-020-66195-3

Multi-set Pre-processing of Multicolor Flow Cytometry Data
Cited by: 2
Author(s): Rita Folcarelli, Gerjen H. Tinnevelt, Bart Hilvering, Kristiaan Wouters, Selma van Staveren, G.J. Postma, Nienke Vrisekoop, L.M.C. Buydens, Leo Koenderman
Software Mentions: 1
Published: over 4 years ago

10.3389/fimmu.2021.664756

RvE1 Impacts the Gingival Inflammatory Infiltrate by Inhibiting the T Cell Response in Experimental Periodontitis
Cited by: 25
Author(s): Claudio Álvarez, Henrique Ballassini Abdalla, Salwa Sulliman, Paola Liliana Páez Rojas, Yaotang Wu, Rawan Almarhoumi, Ren‐Yeong Huang, Mario Galindo, Rolando Vernal, Alpdoğan Kantarcı
Software Mentions: 1
Published: over 3 years ago

10.3389/fimmu.2020.00156

Subordinate Effect of -21M HLA-B Dimorphism on NK Cell Repertoire Diversity and Function in HIV-1 Infected Individuals of African Origin
Cited by: 6
Author(s): Elia Moreno Cubero, Ane Ogbe, Isabela Pedroza-Pacheco, Myron S. Cohen, Barton F. Haynes, Persephone Borrow, Dimitra Peppa
Software Mentions: 1
Published: almost 5 years ago

10.1016/j.csbj.2018.10.004

Cytofast: A workflow for visual and quantitative analysis of flow and mass cytometry data to discover immune signatures and correlations
Cited by: 29
Author(s): Guillaume Beyrend, Koen A. Stam, Thomas Höllt, Ferry Ossendorp, Ramon Arens
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-020-70492-2

Salmonella enterica serovar Typhi exposure elicits ex vivo cell-type-specific epigenetic changes in human gut cells
Cited by: 8
Author(s): Marcelo B. Sztein, Andrea C Bafford, Rosângela Salerno-Gonçalves
Software Mentions: 1
Published: over 4 years ago

10.1002/cti2.1204

Increased IL‐10‐producing regulatory T cells are characteristic of severe cases of COVID‐19
Cited by: 56
Author(s): Julika Neumann, Teresa Prezzemolo, Lore Vanderbeke, Carlos P. Roca, Margaux Gerbaux, Silke Janssens, Mathijs Willemsen, Oliver T. Burton, Pierre Van Mol, Yannick Van Herck, Joost Wauters, Els Wauters, Adrian Liston, Stéphanie Humblet-Baron
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-021-83577-3

Air pollution exposure is linked with methylation of immunoregulatory genes, altered immune cell profiles, and increased blood pressure in children
Cited by: 38
Author(s): Mary Prunicki, Nicholas Cauwenberghs, Justin Lee, Xiaoying Zhou, Hesam Movassagh, Elizabeth M. Noth, Fred Lurmann, S. Katharine Hammond, John R. Balmes, Manisha Desai, Joseph C. Wu, Kari Nadeau
Software Mentions: 1
Published: almost 4 years ago

10.3389/fimmu.2019.00503

TLR3 Activation of Intratumoral CD103+ Dendritic Cells Modifies the Tumor Infiltrate Conferring Anti-tumor Immunity
Cited by: 22
Author(s): Emiliano Roselli, Paula Araya, Nicolás Gonzalo Núñez, Gerardo Gatti, Francesca Graziano, Christine Sedlik, Philippe Benaroch, Eliane Piaggio, Mariana Maccioni
Software Mentions: 1
Published: over 5 years ago

10.1002/cti2.1202

Use of human splenocytes in an innovative humanised mouse model for prediction of immunotherapy‐induced cytokine release syndrome
Cited by: 7
Author(s): Alba Matas-Céspedes, Lee R. Brown, Krishnaa Mahbubani, Bethany Bareham, Jackie Higgins, Michelle Curran, Lolke de Haan, Jean−Martin Lapointe, Richard Stebbings, Kourosh Saeb‐Parsy
Software Mentions: 1
Published: almost 5 years ago

10.3389/fimmu.2019.00619

Comparison of Mesenchymal Stromal Cells From Different Origins for the Treatment of Graft-vs.-Host-Disease in a Humanized Mouse Model
Cited by: 49
Author(s): Céline Gregoire, Caroline Ritacco, Muriel Hannon, Laurence Seidel, Loïc Delens, Ludovic Belle, Sophie Dubois, Sophie Vériter, Chantal Lechanteur, Alexandra Briquet, Sophie Servais, Grégory Ehx, Yves Béguin, Frédéric Baron
Software Mentions: 1
Published: over 5 years ago

10.3389/fimmu.2020.615091

Immunological Hallmarks for Clinical Response to BCG in Bladder Cancer
Cited by: 25
Author(s): Chun Jye Lim, Phuong Hoang Diem Nguyen, Martin Wasser, Pavanish Kumar, Yun Hua Lee, Nurul Jannah Mohamed Nasir, Camillus Chua, Liyun Lai, Sharifah Nur Hazirah, Josh Jie Hua Loh, Li Yan Khor, Joe Yeong, Tony Kiat Hon Lim, Albert Low, Salvatore Albani, Tsung Wen Chong, Valerie Chew
Software Mentions: 1
Published: almost 4 years ago

10.3389/fimmu.2021.752612

LOX-1-Expressing Immature Neutrophils Identify Critically-Ill COVID-19 Patients at Risk of Thrombotic Complications
Cited by: 10
Author(s): Béhazine Combadière, Lucille Adam, Noëlline Guillou, Paul Quentric, Pierre Rosenbaum, Karim Dorgham, Olivia Bonduelle, Christophe Parizot, Delphine Sauce, Julien Mayaux, Charles‐Édouard Luyt, Alexandre Boissonnas, Zahir Amoura, Valérie Pourcher, Makoto Miyara, Guy Gorochov, Amélie Guihot, Christophe Combadière
Software Mentions: 1
Published: about 3 years ago

10.3390/cells9071723

High-Dimensional Single-Cell Quantitative Profiling of Skeletal Muscle Cell Population Dynamics during Regeneration
Cited by: 19
Author(s): Lucia Lisa Petrilli, Filomena Spada, Alessandro Palma, Alessio Reggio, Marco Rosina, Cesare Gargioli, Luisa Castagnoli, Claudia Fuoco, Gianni Cesareni
Software Mentions: 1
Published: over 4 years ago

10.1002/eji.202049141

Human myeloid‐derived suppressor cell expansion during sepsis is revealed by unsupervised clustering of flow cytometric data
Cited by: 6
Author(s): Marco De Zuani, Marcela Hortová-Kohoutková, Ivana Andrejčinová, Veronika Tomášková, Vladimír Šrámek, Martin Helán, Jan Frič
Software Mentions: 1
Published: over 3 years ago

10.3390/cells10051109

The Systemic Immune Response in COVID-19 Is Associated with a Shift to Formyl-Peptide Unresponsive Eosinophils
Cited by: 9
Author(s): Leo Koenderman, Maarten J. Siemers, Corneli van Aalst, Suzanne Bongers, Roy Spijkerman, Bas J J Bindels, Giulio Giustarini, Harriët M. R. van Goor, Karin A H Kaasjager, Nienke Vrisekoop
Software Mentions: 1
Published: over 3 years ago

10.3389/fbioe.2020.01040

Bioengineering the Oxygen-Deprived Tumor Microenvironment Within a Three-Dimensional Platform for Studying Tumor-Immune Interactions
Cited by: 18
Author(s): Somshuvra Bhattacharya, Kristin Calar, Claire Evans, Mark Petrasko, Pilar de la Puente
Software Mentions: 1
Published: about 4 years ago

10.1186/s12974-019-1449-9

Expansion and activation of distinct central memory T lymphocyte subsets in complex regional pain syndrome
Cited by: 23
Author(s): Marc Russo, Nathan T. Fiore, Caryn van Vreden, Dominic Bailey, Danielle M. Santarelli, Helen M. McGuire, Barbara Fazekas de St Groth, Paul J. Austin
Software Mentions: 1
Published: over 5 years ago

10.3389/fimmu.2019.01141

High Salt Inhibits Tumor Growth by Enhancing Anti-tumor Immunity
Cited by: 29
Author(s): Ralf Willebrand, Ibrahim Hamad, Lauren Van Zeebroeck, Máté Kiss, Kirsten Bruderek, Anneleen Geuzens, Dries Swinnen, Beatriz F. Côrte-Real, Lajos Markó, Els Lebegge, Damya Laoui, Josephine Kemna, Thomas Kammertoens, Sven Brandau, Jo A. Van Ginderachter, Markus Kleinewietfeld
Software Mentions: 1
Published: over 5 years ago

10.1097/HS9.0000000000000173

Innovation in Flow Cytometry Analysis: A New Paradigm Delineating Normal or Diseased Bone Marrow Subsets Through Machine Learning
Cited by: 19
Author(s): Francis Lacombe, B. Dupont, Nicolas Lechevalier, Jean Vial, Marie C. Béné
Software Mentions: 1
Published: over 5 years ago

10.1097/HS9.0000000000000512

Definition of Erythroid Differentiation Subsets in Normal Human Bone Marrow Using FlowSOM Unsupervised Cluster Analysis of Flow Cytometry Data
Cited by: 7
Author(s): Marie C. Béné, Olof Axler, Despoina Violidaki, Francis Lacombe, Mats Ehinger, Anna Porwit
Software Mentions: 1
Published: almost 4 years ago

10.1371/journal.pbio.3001199

PD-L1 signaling on human memory CD4+ T cells induces a regulatory phenotype
Cited by: 29
Author(s): Giorgia Fanelli, Marco Romano, Estefanía Nova-Lamperti, Mariana Werner Sunderland, Alessandra Nerviani, Cristiano Scottà, Michèle Bombardieri, Sergio A. Quezada, Steven Sacks, Randolph J. Noelle, Costantino Pitzalis, Robert I. Lechler, Giovanna Lombardi, Pablo D. Becker
Software Mentions: 1
Published: over 3 years ago

10.1084/jem.20202515

Persistent cellular immunity to SARS-CoV-2 infection
Cited by: 103
Author(s): Gaëlle Breton, Pilar Mendoza, Thomas Hägglöf, Thiago Y. Oliveira, Dennis Schaefer-Babajew, Christian Gaebler, Martina Turroja, Arlene Hurley, Marina Caskey, Michel C. Nussenzweig
Software Mentions: 1
Published: almost 4 years ago

10.1111/imm.12888

Human dendritic cell subsets: an update
Cited by: 764
Author(s): Matthew Collin, Venetia Bigley
Software Mentions: 1
Published: over 6 years ago

Projects: bioconductor: FlowSOM

Papers Mentioning FlowSOM 177