Projects: bioconductor: DegNorm
https://packages.ecosyste.ms/registries/bioconductor.org/packages/DegNorm
DegNorm: degradation normalization for RNA-seq data
1 version
Latest release: over 2 years ago
3,110 downloads total
Enhanced Analysis
Educational Contributors:
jzwang@northwestern.edu
Repository Activity:
Repository Owner:
Ji-Ping Wang (user)
Professor in Statistics and Data Science, Adjunct Professor of Molecular BioSciences. My research interest is in interface of statistics and bi-medical sciences Academic
Professor in Statistics and Data Science, Adjunct Professor of Molecular BioSciences. My research interest is in interface of statistics and bi-medical sciences Academic
README Analysis:
Science Score: 100/100
Starting Score: 100 points
Bonuses:
-
+8
Academic maintainer emails
1 maintainers with academic email addresses -
+20
Educational commit emails
1 contributors with educational email addresses -
+20
Academic repository owner
Repository owned by academic institution -
+10
Educational website
Repository owner has educational domain website -
+20
Science terms in README
10 scientific terms found in README
Penalties:
-
-10
No science terms in description
No scientific terms found in description
Very Likely Science (100)
Papers Mentioning DegNorm 4
10.1186/s12864-021-07381-z
Multiple freeze-thaw cycles lead to a loss of consistency in poly(A)-enriched RNA sequencingCited by: 11
Author(s): Benjamin P. Kellman, Hratch Baghdassarian, Tiziano Pramparo, Isaac Shamie, Vahid H. Gazestani, Arjana Begzati, Shangzhong Li, Srinivasa Nalabolu, Sarah Murray, Linda Lopez, Karen Pierce, Eric Courchesne, Nathan E. Lewis
Software Mentions: 11
Published: over 5 years ago
10.3390/jof7070562
mRNA Inventory of Extracellular Vesicles from Ustilago maydisCited by: 21
Author(s): Seomun Kwon, Oliver Rupp, Andreas Brachmann, Christopher Blum, Anton Kraege, Alexander Goesmann, Michael Feldbrügge
Software Mentions: 5
Published: almost 5 years ago
10.1186/s12967-020-02550-2
Classification models using circulating neutrophil transcripts can detect unruptured intracranial aneurysmCited by: 13
Author(s): Kerry E. Poppenberg, Vincent M. Tutino, Li Lü, Muhammad Waqas, Armond June, Lee Chaves, Kaiyu Jiang, James N. Jarvis, Yijun Sun, Kenneth V. Snyder, Elad I. Levy, Adnan H. Siddiqui, John Kolega, Hui Meng
Software Mentions: 3
Published: over 5 years ago
10.1186/s13059-019-1682-7
DegNorm: normalization of generalized transcript degradation improves accuracy in RNA-seq analysisCited by: 21
Author(s): Bin Xiong, Yiben Yang, Frank R. Fineis, Ji Ping Wang
Software Mentions: 2
Published: about 7 years ago