bioconductor: DOSE | Projects | Ecosyste.ms: Papers

10.3390/genes10080608

DNILMF-LDA: Prediction of lncRNA-Disease Associations by Dual-Network Integrated Logistic Matrix Factorization and Bayesian Optimization
Cited by: 16
Author(s): Yan Li, Junyi Li, Naizheng Bian
Software Mentions: 2
Published: over 5 years ago

10.1093/database/bay077

ChemDIS 2: an update of chemical-disease inference system
Cited by: 7
Author(s): Chun Wei Tung, Shan Shan Wang
Software Mentions: 2
Published: almost 7 years ago

10.1371/journal.pone.0133160

The Pneumonia Severity Index as a Predictor of In-Hospital Mortality in Acute Exacerbation of Chronic Obstructive Pulmonary Disease
Cited by: 19
Author(s): Guoping Hu, Yumin Zhou, Yankui Wu, Yan Yu, Wenjie Liang, Pixin Ran
Software Mentions: 2
Published: over 9 years ago

10.1038/s41598-020-68224-7

A bioinformatics investigation into molecular mechanism of Yinzhihuang granules for treating hepatitis B by network pharmacology and molecular docking verification
Cited by: 19
Author(s): Jingyuan Zhang, Xinkui Liu, Wei Zhou, Guoliang Cheng, Jiarui Wu, Siyu Guo, Shanshan Jia, Yingying Liu, Bingbing Li, Xiaomeng Zhang, Miaomiao Wang
Software Mentions: 2
Published: over 4 years ago

10.36660/abc.20190207

Diagnóstico por Imagem: Origem Anômala da ACE Saindo do Tronco da Artéria Pulmonar
Cited by: 0
Author(s): Haisong Bu, Tianli Zhao
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-021-86690-5

Variable expression quantitative trait loci analysis of breast cancer risk variants
Cited by: 4
Author(s): George A. R. Wiggins, Michael A. Black, Anita K. Dunbier, Tony R. Merriman, John F. Pearson, Logan C. Walker
Software Mentions: 2
Published: over 3 years ago

10.1007/s10126-020-09980-5

Red and White Chinook Salmon (Oncorhynchus tshawytscha): Differences in the Transcriptome Profile of Muscle, Liver, and Pylorus
Cited by: 14
Author(s): Angelico Madaro, Ole Torrissen, Paul Whatmore, Santosh P. Lall, Jerome Schmeisser, Viviane Verlhac Trichet, Rolf Erik Olsen
Software Mentions: 2
Published: over 4 years ago

10.1155/2021/6623912

Network Pharmacology and Molecular Docking-Based Prediction of the Mechanism of Qianghuo Shengshi Decoction against Rheumatoid Arthritis
Cited by: 9
Author(s): Zhihao Zeng, Jiaoting Hu, Jin Jiang, Guanlin Xiao, Ruipei Yang, Sumei Li, Yangxue Li, Huajing Huang, Huixian Zhong, Xiaoli Bi
Software Mentions: 2
Published: about 3 years ago

10.7150/ijbs.33806

GBDTCDA: Predicting circRNA-disease Associations Based on Gradient Boosting Decision Tree with Multiple Biological Data Fusion
Cited by: 42
Author(s): Xiujuan Lei, Zengqiang Fang
Software Mentions: 2
Published: almost 6 years ago

10.1186/s12864-018-4732-8

CoNVaQ: a web tool for copy number variation-based association studies
Cited by: 21
Author(s): Simon J. Larsen, Luísa Matos do Canto, Sílvia Regina Rogatto, Jan Baumbach
Software Mentions: 2
Published: over 6 years ago

10.1186/s12906-020-02909-4

Network Pharmacology Approach to Uncover the Mechanism Governing the Effect of Radix Achyranthis Bidentatae on Osteoarthritis
Cited by: 27
Author(s): Laigen Zhang, Xianglin Shi, Zhengquan Huang, Jun J. Mao, Wei Mei, Liang Ding, Li Zhang, Runlin Xing, Peimin Wang
Software Mentions: 2
Published: over 4 years ago

10.3389/fonc.2021.671418

Expression Analysis of Long Non-Coding RNAs Related With FOXM1, GATA3, FOXA1 and ESR1 in Breast Tissues
Cited by: 5
Author(s): Bita Hassani, Mohammad Taheri, Yazdan Asgari, Ali Zekri, Ali Sattari, Soudeh Ghafouri‐Fard, Farkhondeh Pouresmaeili
Software Mentions: 2
Published: over 3 years ago

10.3389/fnmol.2017.00430

Evidence for a Pan-Neurodegenerative Disease Response in Huntington's and Parkinson's Disease Expression Profiles
Cited by: 26
Author(s): Adam Labadorf, Seung Hoan Choi, Richard H. Myers
Software Mentions: 2
Published: almost 7 years ago

10.3389/fpsyg.2017.01708

Loss Aversion Reflects Information Accumulation, Not Bias: A Drift-Diffusion Model Study
Cited by: 12
Author(s): Summer N. Clay, John A. Clithero, Alison Harris, Catherine L. Reed
Software Mentions: 2
Published: about 7 years ago

10.3389/fimmu.2019.02956

Profile of Histone H3 Lysine 4 Trimethylation and the Effect of Lipopolysaccharide/Immune Complex-Activated Macrophages on Endotoxemia
Cited by: 12
Author(s): Vichaya Ruenjaiman, Patcharavadee Butta, Yu-Wei Leu, Monnat Pongpanich, Asada Leelahavanichkul, Patipark Kueanjinda, Tanapat Palaga
Software Mentions: 2
Published: almost 5 years ago

10.3389/fimmu.2021.700031

Discovery of Novel Biomarkers for Diagnosing and Predicting the Progression of Multiple Sclerosis Using TMT-Based Quantitative Proteomics
Cited by: 10
Author(s): Yijun Shi, Yaowei Ding, Guoge Li, Limin Wang, Rasha Alsamani Osman, Jialu Sun, Lingye Qian, Guanghui Zheng, Guojun Zhang
Software Mentions: 2
Published: over 3 years ago

10.1161/JAHA.117.007385

Pro‐Inflammatory Biomarkers in Stable Versus Acutely Decompensated Heart Failure With Preserved Ejection Fraction
Cited by: 38
Author(s): Abraham Abernethy, Sadi Raza, Jie Sun, Kevin J. Anstrom, Russell P. Tracy, Julia Steiner, Peter VanBuren, Martin M. LeWinter
Software Mentions: 2
Published: over 6 years ago

10.1002/acm2.13167

Vendor‐independent skin dose mapping application for interventional radiology and cardiology
Cited by: 5
Author(s): Marko Krajinović, Nikola Kržanović, Olivera Ciraj-Bjelac
Software Mentions: 2
Published: almost 4 years ago

10.1186/s12859-020-03583-6

pyMeSHSim: an integrative python package for biomedical named entity recognition, normalization, and comparison of MeSH terms
Cited by: 8
Author(s): Zhihui Luo, Mengwei Shi, Zhijun Yang, Hongyu Zhang, Zhenxia Chen
Software Mentions: 2
Published: over 4 years ago

10.1111/jcpp.12751

Predictors and pathways of language and motor development in four prospective cohorts of young children in Ghana, Malawi, and Burkina Faso
Cited by: 53
Author(s): Elizabeth L. Prado, Souheila Abbeddou, Seth Adu‐Afarwuah, Mary Arimond, Per Ashorn, Ulla Ashorn, Jaden Bendabenda, Kenneth H. Brown, Sonja Y. Hess, Emma Kortekangas, Anna Lartey, Kenneth Maleta, Brietta M. Oaks, Eugenia Ocansey, Harriet Okronipa, Jean Bosco Ouédraogo, Anna Pulakka, Jérôme W. Somé, Christine P Stewart, Robert C. Stewart, Stephen A. Vosti, Elizabeth Yakes Jimenez, Kathryn G. Dewey
Software Mentions: 2
Published: over 7 years ago

10.3389/fgene.2021.647309

Prediction of Overall Survival Rate in Patients With Hepatocellular Carcinoma Using an Integrated Model Based on Autophagy Gene Marker
Cited by: 3
Author(s): Shuaiqun Wang, Dalu Yang, Wei Kong
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-018-19357-3

TPGLDA: Novel prediction of associations between lncRNAs and diseases via lncRNA-disease-gene tripartite graph
Cited by: 73
Author(s): Liang Ding, Minghui Wang, Dongdong Sun, Ao Li
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41598-018-29789-6

COPD is accompanied by co-ordinated transcriptional perturbation in the quadriceps affecting the mitochondria and extracellular matrix
Cited by: 27
Author(s): Saffron A.G. Willis‐Owen, Anna Thompson, Paul Kemp, Michael I. Polkey, Woc Cookson, Miriam F. Moffatt, Samantha A. Natanek
Software Mentions: 2
Published: over 6 years ago

10.3389/fgene.2019.00605

De Novo Germline Mutations in SEMA5A Associated With Infantile Spasms
Cited by: 7
Author(s): Qiongdan Wang, Zhenwei Liu, Zhongdong Lin, Ru Zhang, Yutian Lu, Weijue Su, Feng Li, Xi Xu, Mengyun Tu, Yongliang Lou, Junzhao Zhao, Xiaoqun Zheng
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0157274

BLAT2DOLite: An Online System for Identifying Significant Relationships between Genetic Sequences and Diseases
Cited by: 2
Author(s): Cheng Liang, Shuo Zhang, Yang Hu
Software Mentions: 1
Published: over 8 years ago

10.1120/jacmp.v15i2.4705

Evaluation of semiempirical VMAT dose reconstruction on a patient dataset based on biplanar diode array measurements
Cited by: 8
Author(s): Cassandra Stambaugh, Daniel Opp, Stuart Wasserman, Geoffrey Zhang, Vladimir Feygelman
Software Mentions: 1
Published: over 10 years ago

10.1120/jacmp.v17i2.5935

A design of a DICOM‐RT‐based tool box for nonrigid 4D dose calculation
Cited by: 0
Author(s): Victy Y. W. Wong, Colin Baker, TW Leung, Stewart Y. Tung
Software Mentions: 1
Published: over 8 years ago

10.1155/2014/648389

Resistant Traits in Digital Organisms Do Not Revert Preselection Status despite Extended Deselection: Implications to Microbial Antibiotics Resistance
Cited by: 4
Author(s): Clarence F. G. Castillo, Maurice Ht Ling
Software Mentions: 1
Published: almost 11 years ago

10.1111/mcn.12377

Impact of small quantity lipid‐based nutrient supplements on infant and young child feeding practices at 18 months of age: results from four randomized controlled trials in Africa
Cited by: 28
Author(s): Mary Arimond, Souheila Abbeddou, Chiza Kumwenda, Harriet Okronipa, Jaimie Hemsworth, Elizabeth Yakes Jimenez, Eugenia Ocansey, Anna Lartey, Ulla Ashorn, Seth Adu‐Afarwuah, Stephen A. Vosti, Sonja Y. Hess, Kathryn G. Dewey
Software Mentions: 1
Published: almost 8 years ago

10.1136/bmjgh-2018-001155

Path analyses of risk factors for linear growth faltering in four prospective cohorts of young children in Ghana, Malawi and Burkina Faso
Cited by: 31
Author(s): Elizabeth L. Prado, Elizabeth Yakes Jimenez, Stephen A. Vosti, Robert C. Stewart, Christine P Stewart, Jérôme W. Somé, Anna Pulakka, Jean Bosco Ouédraogo, Harriet Okronipa, Eugenia Ocansey, Brietta M. Oaks, Kenneth Maleta, Anna Lartey, Emma Kortekangas, Sonja Y. Hess, Kenneth H. Brown, Jaden Bendabenda, Per Ashorn, Per Ashorn, Mary Arimond, Seth Adu‐Afarwuah, Souheila Abbeddou, Kathryn G. Dewey
Software Mentions: 1
Published: almost 6 years ago

10.3390/ijms22168505

GATNNCDA: A Method Based on Graph Attention Network and Multi-Layer Neural Network for Predicting circRNA-Disease Associations
Cited by: 5
Author(s): Cun-Mei Ji, Zhihao Liu, Yutian Wang, Jian Ni, Chun-Hou Zheng
Software Mentions: 1
Published: over 3 years ago

10.3389/fgene.2019.00897

Predicting circRNA–Disease Associations Based on Improved Collaboration Filtering Recommendation System With Multiple Data
Cited by: 20
Author(s): Xiujuan Lei, Zengqiang Fang, Ling Guo
Software Mentions: 1
Published: about 5 years ago

10.1186/1465-9921-12-152

E pluribus plurima: Multidimensional indices and clinical phenotypes in COPD
Cited by: 4
Author(s): Andrea Rossi, Erika Zanardi
Software Mentions: 1
Published: almost 13 years ago

10.1111/mcn.12518

Willingness to pay for small‐quantity lipid‐based nutrient supplements for women and children: Evidence from Ghana and Malawi
Cited by: 13
Author(s): Katherine Adams, Stephen A. Vosti, Emmanuel Ayifah, Thokozani E Phiri, Seth Adu‐Afarwuah, Kenneth Maleta, Ulla Ashorn, Mary Arimond, Kathryn G. Dewey
Software Mentions: 1
Published: about 7 years ago

10.1186/s12920-020-0660-y

Discovery of inflammatory bowel disease-associated miRNAs using a novel bipartite clustering approach
Cited by: 8
Author(s): Md. Altaf‐Ul‐Amin, Mohammad Bozlul Karim, Pingzhao Hu, Naoaki Ono, Shigehiko Kanaya
Software Mentions: 1
Published: almost 5 years ago

10.1155/2020/4030915

Identification of Key Genes and Prognostic Analysis between Chromophobe Renal Cell Carcinoma and Renal Oncocytoma by Bioinformatic Analysis
Cited by: 7
Author(s): Hongwei Wu, Lijing Fan, Haiping Li, Baozhang Guan, Bo Hu, Fanna Liu, Berthold Hocher, Yin Li
Software Mentions: 1
Published: almost 5 years ago

10.1186/s12859-019-3123-8

Identifying Cancer genes by combining two-rounds RWR based on multiple biological data
Cited by: 4
Author(s): Wenxiang Zhang, Xiujuan Lei, Chen Bian
Software Mentions: 1
Published: about 5 years ago

10.1186/s12859-016-1080-z

Generalized enrichment analysis improves the detection of adverse drug events from the biomedical literature
Cited by: 9
Author(s): Rainer Winnenburg, Nigam H. Shah
Software Mentions: 1
Published: over 8 years ago

Projects: bioconductor: DOSE

Papers Mentioning DOSE 138