bioconductor: DMRcate | Projects | Ecosyste.ms: Papers

10.1038/s41598-017-03434-0

Identification of differentially methylated BRCA1 and CRISP2 DNA regions as blood surrogate markers for cardiovascular disease
Cited by: 34
Author(s): Geoffrey Istas, Ken Declerck, Maria Pudenz, Katarzyna Szarc vel Szic, Verónica Lendinez-Tortajada, Montserrat León-Latre, Karen Heyninck, Guy Haegeman, José A. Casasnovas, María Téllez-Plaza, Clarissa Gerhäuser, Christian Heiß, Ana Rodriguez-Mateos, Wim Vanden Berghe
Software Mentions: 2
Published: about 7 years ago

10.1038/s41598-018-24505-w

Exposure to Phthalate, an Endocrine Disrupting Chemical, Alters the First Trimester Placental Methylome and Transcriptome in Women
Cited by: 113
Author(s): Natalia M. Grindler, Lauren A. Vanderlinden, Rajendiran Karthikraj, Kurunthachalam Kannan, Stephanie Teal, Alex J. Polotsky, Theresa L. Powell, Ivana V. Yang, Thomas Jansson
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0212043

Epigenome-wide analysis of sperm cells identifies IL22 as a possible germ line risk locus for psoriatic arthritis
Cited by: 21
Author(s): Remy Pollock, Laila Zaman, Vinod Chandran, Dafna D. Gladman
Software Mentions: 2
Published: over 5 years ago

10.1186/s12859-017-1986-0

Redundancy analysis allows improved detection of methylation changes in large genomic regions
Cited by: 7
Author(s): Carlos Ruiz‐Arenas, Juan R. González
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41598-020-58093-5

DNA hypomethylation during MSC chondrogenesis occurs predominantly at enhancer regions
Cited by: 14
Author(s): M.J. Barter, Catherine Bui, Kathleen Cheung, Julia Falk, Rodolfo Gómez, Andrew Skelton, Hannah R Elliott, Louise N. Reynard, David A. Young
Software Mentions: 2
Published: over 4 years ago

10.1038/s41598-020-66797-x

Genome-wide DNA methylation analysis of KRAS mutant cell lines
Cited by: 6
Author(s): Ben Yi Tew, Joel Durand, Kirsten L. Bryant, Tikvah K. Hayes, Sen Peng, Nhan L. Tran, Gerald C. Gooden, David N. Buckley, Channing J. Der, Albert S. Baldwin, Bodour Salhia
Software Mentions: 2
Published: over 4 years ago

10.1038/s41598-020-67301-1

Ursodeoxycholic acid improves feto-placental and offspring metabolic outcomes in hypercholanemic pregnancy
Cited by: 10
Author(s): Luiza Borges Manna, Georgia Papacleovoulou, Flavia Flaviani, Vanessa Pataia, Asaad Qadri, Shadi Abu‐Hayyeh, Saraid McIlvride, Eugène Jansen, Peter H. Dixon, Jennifer Chambers, Marta Vazquez-Lopez, Annika Wahlström, Negusse Tadesse Kitaba, Hanns‐Ulrich Marschall, Keith M. Godfrey, Karen A. Lillycrop, Catherine Williamson
Software Mentions: 2
Published: over 4 years ago

10.1038/s41598-020-72068-6

Heterogeneous ozone effects on the DNA methylome of bronchial cells observed in a crossover study
Cited by: 11
Author(s): Marie‐Abèle Bind, Donald B. Rubin, Andrés Cárdenas, Radhika Dhingra, Cavin Ward‐Caviness, Liu Z, Jaime E. Mirowsky, Joel Schwartz, David Díaz-Sánchez, Robert B. Devlin
Software Mentions: 2
Published: about 4 years ago

10.3390/ijms22168967

Aflatoxin Exposure during Early Life Is Associated with Differential DNA Methylation in Two-Year-Old Gambian Children
Cited by: 3
Author(s): Akram Ghantous, Alexei Novoloaca, Liacine Bouaoun, Cyrille Cuenin, Marie Pierre Cros, Yong Xu, Héctor Hernandez-Vargas, Momodou K. Darboe, Andrew M. Prentice, Sophie E. Moore, Yun Gong, Zdenko Herceg, Michael N. Routledge
Software Mentions: 2
Published: about 3 years ago

10.1161/HYPERTENSIONAHA.119.12634

Hypertensive Disorders of Pregnancy and DNA Methylation in Newborns
Cited by: 64
Author(s): Nabila Kazmi, Gemma C Sharp, Sarah E. Reese, Florianne O L Vehmeijer, Jari Lahti, Christian M. Page, Weimin Zhang, Sheryl L. Rifas‐Shiman, Faisal I. Rezwan, Andrew Simpkin, Kimberley Burrows, Tom G Richardson, Diana L. Santos Ferreira, Abigail Fraser, Quaker E. Harmon, Shanshan Zhao, Vincent W. V. Jaddoe, Darina Czamara, Elisabeth B. Binder, Maria C Magnus, Siri Eldevik Håberg, Wenche Nystad, Ellen Aagaard Nøhr, Anne P. Starling, Katerina Kechris, Ivana V. Yang, Dawn L. DeMeo, Augusto A. Litonjua, Andrea A. Baccarelli, Emily Oken, John W. Holloway, Wilfried Karmaus, Syed Hasan Arshad, Dana Dabelea, Thorkild I A Sørensen, Hannele Laivuori, Katri Räikkönen, Janine F. Felix, Stephanie J. London, Marie‐France Hivert, Tom R. Gaunt, Debbie A. Lawlor, Caroline L Relton
Software Mentions: 2
Published: about 5 years ago

10.3390/ijerph17186775

Neonatal Lead (Pb) Exposure and DNA Methylation Profiles in Dried Bloodspots
Cited by: 23
Author(s): Luke Montrose, Jaclyn M. Goodrich, Masako Morishita, Joseph Kochmanski, Zachary Klaver, Raymond G. Cavalcante, Julie C. Lumeng, Karen E. Peterson, Dana C. Dolinoy
Software Mentions: 2
Published: about 4 years ago

10.1186/s13148-019-0653-x

Prenatal maternal antidepressants, anxiety, and depression and offspring DNA methylation: epigenome-wide associations at birth and persistence into early childhood
Cited by: 40
Author(s): Andrés Cárdenas, Sabrina Faleschini, Andrea Cortes Hidalgo, Sheryl L. Rifas–Shiman, Andrea A. Baccarelli, Dawn L. DeMeo, Augusto A. Litonjua, Alexander Neumann, Janine F. Felix, Vincent W. V. Jaddoe, Hanan El Marroun, Henning Tiemeier, Emily Oken, Marie‐France Hivert, Heather H. Burris
Software Mentions: 2
Published: over 5 years ago

10.1186/s13148-019-0684-3

Functional DNA methylation signatures for autism spectrum disorder genomic risk loci: 16p11.2 deletions and CHD8 variants
Cited by: 49
Author(s): Michelle Siu, Darci T. Butcher, Andrei L. Turinsky, Cheryl Cytrynbaum, Dimitri J. Stavropoulos, Susan Walker, Oana Caluseriu, M. Carter, Youliang Lou, Rob Nicolson, Stelios Georgiades, Péter Szatmári, Evdokia Anagnostou, Stephen W. Scherer, Sanaa Choufani, Michael Brudno, Rosanna Weksberg
Software Mentions: 2
Published: about 5 years ago

10.1038/s41388-021-01923-1

Integration of genome-level data to allow identification of subtype-specific vulnerability genes as novel therapeutic targets
Cited by: 1
Author(s): Ed C. Schwalbe, H Lalchungnunga, Fadhel M. Lafta, Timothy M. Barrow, Gordon Strathdee
Software Mentions: 2
Published: over 3 years ago

10.1186/s13073-020-0716-9

Epigenome-wide meta-analysis of blood DNA methylation in newborns and children identifies numerous loci related to gestational age
Cited by: 76
Author(s): Simon Kebede Merid, Alexei Novoloaca, Gemma C Sharp, Leanne K. Küpers, Alvin T. Kho, Ritu Roy, Lu Gao, Isabella Annesi‐Maesano, Pooja Jain, Michelle Plusquin, Manolis Kogevinas, Catherine Allard, Florianne O L Vehmeijer, Nabila Kazmi, Lucas A. Salas, Faisal I. Rezwan, Hongmei Zhang, Sylvain Sebért, Darina Czamara, Sheryl L. Rifas–Shiman, Phillip E. Melton, Debbie A. Lawlor, Göran Pershagen, Carrie V. Breton, Karen Huen, Nour Baïz, Luigi Gagliardi, Tim S. Nawrot, Eva Corpeleijn, Patrice Perron, Liesbeth Duijts, Ellen Aagaard Nøhr, Mariona Bustamante, Susan Ewart, Wilfried Karmaus, Shanshan Zhao, Christian M. Page, Zdenko Herceg, Marjo‐Riitta Järvelin, Jari Lahti, Andrea A. Baccarelli, Denise Anderson, Priyadarshini Kachroo, Caroline L Relton, Anna Bergström, Brenda Eskenazi, Munawar Hussain Soomro, Paolo Víneis, Harold Snieder, Luigi Bouchard, Vincent W.V. Jaddoe, Thorkild I A Sørensen, Martine Vrijheid, Syed Hasan Arshad, John W. Holloway, Siri Eldevik Håberg, Per Magnus, Terence Dwyer, Elisabeth B. Binder, Dawn L. DeMeo, Judith M. Vonk, John P. Newnham, Kelan G. Tantisira, Inger Kull, Joseph L. Wiemels, Barbara Heude, Jordi Sunyer, Wenche Nystad, Monica Cheng Munthe‐Kaas, Katri Räikkönen, Emily Oken, Rae‐Chi Huang, Scott T. Weiss, Josep M. Antó, Jean Bousquet, Ashish Kumar, Cilla Söderhäll, Catarina Almqvist, Andrés Cárdenas, Olena Gruzieva, Cheng‐Jian Xu, Sarah E. Reese, Juha Kere, Petter Brodin, Olivia Solomon, Matthias Wielscher, Nina Holland, Akram Ghantous, Marie‐France Hivert, Janine F. Felix, Gerard H. Koppelman, Stephanie J. London, Erik Melén
Software Mentions: 1
Published: over 4 years ago

10.1038/s41398-018-0252-1

Exposure to childhood abuse is associated with human sperm DNA methylation
Cited by: 54
Author(s): Andrea L. Roberts, Nicole Gladish, Evan Gatev, Meaghan J. Jones, Mingyang Song, Julia L. MacIsaac, Shelley S. Tworoger, S. Bryn Austin, Cigdem Tanrikut, Jorge E. Chavarro, Andrea A. Baccarelli, Michæl S. Kobor
Software Mentions: 1
Published: about 6 years ago

10.1186/s13148-019-0635-z

Genome-wide DNA methylation and long-term ambient air pollution exposure in Korean adults
Cited by: 66
Author(s): Mi Kyeong Lee, Cheng‐Jian Xu, Megan U. Carnes, C.E. Nichols, James M. Ward, Seungwon Kwon, Sun‐Young Kim, Woo Jin Kim, Stephanie J. London
Software Mentions: 1
Published: over 5 years ago

10.1186/s12940-019-0533-z

Serum dioxin and DNA methylation in the sperm of operation ranch hand veterans exposed to Agent Orange
Cited by: 11
Author(s): Karl T. Kelsey, Matthew Rytel, Edward Dere, Rondi A. Butler, Melissa Eliot, Susan M. Huse, E. Andrés Houseman, Devin C. Koestler, Kim Boekelheide
Software Mentions: 1
Published: almost 5 years ago

10.3390/genes10040274

Perinatal Lead (Pb) Exposure and Cortical Neuron-Specific DNA Methylation in Male Mice
Cited by: 31
Author(s): John Dou, Zishaan Farooqui, Christopher Faulk, Amanda Barks, Tamara R. Jones, Dana C. Dolinoy, Kelly M. Bakulski
Software Mentions: 1
Published: over 5 years ago

10.3389/fgene.2015.00088

Computational epigenomics: challenges and opportunities
Cited by: 6
Author(s): Mark D. Robinson, Mattia Pelizzola
Software Mentions: 1
Published: over 9 years ago

10.1186/s13148-019-0638-9

A comparison of DNA methylation in newborn blood samples from infants with and without orofacial clefts
Cited by: 14
Author(s): Zongli Xu, Rolv Terje Lie, Allen J. Wilcox, Ola Didrik Saugstad, Jack A. Taylor
Software Mentions: 1
Published: over 5 years ago

10.1155/2018/1070645

Data-Driven-Based Approach to Identifying Differentially Methylated Regions Using Modified 1D Ising Model
Cited by: 5
Author(s): Yuanyuan Zhang, Shudong Wang, Xinzeng Wang
Software Mentions: 1
Published: almost 6 years ago

10.1186/s13148-020-00975-6

Association of variably methylated tumour DNA regions with overall survival for invasive lobular breast cancer
Cited by: 10
Author(s): Medha Suman, Pierre Antoine Dugué, Ee Ming Wong, Ji Hoon Eric Joo, John L. Hopper, Tú Nguyen-Dumont, Graham G. Giles, Roger L. Milne, Catriona McLean, Melissa C. Southey
Software Mentions: 1
Published: over 3 years ago

10.1186/s13148-021-01030-8

DNA methylation and cancer incidence: lymphatic–hematopoietic versus solid cancers in the Strong Heart Study
Cited by: 6
Author(s): Arce Domingo‐Relloso, Tianxiao Huan, Karin Haack, Ángela L. Riffo‐Campos, Daniel Levy, M. Daniele Fallin, Mary Beth Terry, Ying Zhang, Dorothy A. Rhoades, Miguel Herreros-Martinez, Esther García‐Esquinas, Shelley A. Cole, María Téllez-Plaza, Ana Navas-Acién
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-020-61241-6

Telomere length correlates with subtelomeric DNA methylation in long-term mindfulness practitioners
Cited by: 20
Author(s): Maite Mendioroz, Marta Puebla‐Guedea, Jesús Montero-Marín, Amaya Urdánoz‐Casado, Idoia Blanco‐Luquin, Miren Roldán, Alberto Labarga, Javier García‐Campayo
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-017-06847-z

DNA methylation signatures of chronic alcohol dependence in purified CD3+ T-cells of patients undergoing alcohol treatment
Cited by: 9
Author(s): Christof Brückmann, Shofiq Islam, Julia L. MacIsaac, Alexander M. Morin, Kathrin N. Karle, Adriana Di Santo, Richard Wüst, Immanuel Lang, Anil Batra, Michæl S. Kobor, Vanessa Nieratschker
Software Mentions: 1
Published: about 7 years ago

10.1186/s13601-020-00365-4

Epigenome-wide association study identifies DNA methylation markers for asthma remission in whole blood and nasal epithelium
Cited by: 10
Author(s): Cancan Qi, Judith M. Vonk, Diana A van der Plaat, Maartje A.E. Nieuwenhuis, F. Nicole Dijk, Dylan Aïssi, Valérie Siroux, H. Marike Boezen, Cheng‐Jian Xu, Gerard H. Koppelman
Software Mentions: 1
Published: almost 4 years ago

10.1186/s13072-017-0128-2

Differential DNA methylation and lymphocyte proportions in a Costa Rican high longevity region
Cited by: 26
Author(s): Lisa M. McEwen, Alexander M. Morin, Rachel D. Edgar, Julia L. MacIsaac, Meaghan J. Jones, William H. Dow, Luis Rosero-Bixby, Michæl S. Kobor, David H. Rehkopf
Software Mentions: 1
Published: over 7 years ago

10.2217/epi-2017-0095

Maternal alcohol consumption and offspring DNA methylation: findings from six general population-based birth cohorts
Cited by: 51
Author(s): Gemma C Sharp, Ryan Arathimos, Sarah E. Reese, Christian M. Page, Janine F. Felix, Leanne K. Küpers, Sheryl L. Rifas‐Shiman, Chunyu Liu, Kimberley Burrows, Shanshan Zhao, Maria C Magnus, Liesbeth Duijts, Eva Corpeleijn, Dawn L. DeMeo, Augusto A. Litonjua, Andrea A. Baccarelli, Marie‐France Hivert, Emily Oken, Harold Snieder, Vincent W. V. Jaddoe, Wenche Nystad, Stephanie J. London, Caroline L Relton, Luisa Zuccolo
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-017-05713-2

Viral driven epigenetic events alter the expression of cancer-related genes in Epstein-Barr-virus naturally infected Burkitt lymphoma cell lines
Cited by: 20
Author(s): Héctor Hernandez-Vargas, Henri Gruffat, Marie Pierre Cros, Audrey Diederichs, Cécilia Sirand, Romina C. Vargas-Ayala, Antonin Jay, G. Durand, Florence Le Calvez-Kelm, Zdenko Herceg, Évelyne Manet, Christopher P. Wild, Massimo Tommasino, Rosita Accardi
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-021-84214-9

Whole genome methylation and transcriptome analyses to identify risk for cerebral palsy (CP) in extremely low gestational age neonates (ELGAN)
Cited by: 7
Author(s): An N. Massaro, Theo K. Bammler, James W. MacDonald, Krystle Perez, Bryan A. Comstock, Sandra E. Juul
Software Mentions: 1
Published: over 3 years ago

10.1016/j.stemcr.2017.05.023

TET-Catalyzed 5-Hydroxymethylation Precedes HNF4A Promoter Choice during Differentiation of Bipotent Liver Progenitors
Cited by: 31
Author(s): Pierre‐Benoit Ancey, Szilvia Ecsedi, Marie-Pierre Lambert, Fazlur Rahman Talukdar, Marie-Pierre Cros, Denise Glaise, Diana María Narváez, Véronique Chauvet, Zdenko Herceg, Anne Corlu, Héctor Hernandez-Vargas
Software Mentions: 1
Published: over 7 years ago

Ecosyste.ms: Papers

Projects: bioconductor: DMRcate

Papers Mentioning DMRcate 132