bioconductor: DESeq2 | Projects | Ecosyste.ms: Papers

10.3389/fgene.2021.594285

New Structural and Single Nucleotide Mutations in Type I and Type II Collagens in Taiwanese Children With Type I and Type II Collagenopathies
Cited by: 0
Author(s): Meng‐Che Tsai, Yen-Yin Chou, Chia-Yi Li, Yi-Chieh Wang, Huang Yu, Chia‐Hsiang Chen, Peng Chen
Software Mentions: 1
Published: about 5 years ago

10.1186/s12864-018-5416-0

Expression analysis of lung miRNAs responding to ovine VM virus infection by RNA-seq
Cited by: 11
Author(s): Martin Bilbao‐Arribas, Naiara Abendaño, Endika Varela-Martínez, Ramsés Reina, Damián F. de Andrés, Begoña M. Jugo
Software Mentions: 1
Published: almost 8 years ago

10.3389/fgene.2017.00163

Identification and Characterization of MicroRNAs in the Goat (Capra hircus) Rumen during Embryonic Development
Cited by: 13
Author(s): Tao Zhong, Jiangtao Hu, Ping Xiao, Siyuan Zhan, Linjie Wang, Jiazhong Guo, Li Li, Hongping Zhang, Lili Niu
Software Mentions: 1
Published: almost 9 years ago

10.3389/fgene.2021.678194

Differentially Expressed MiRNAs of Goat Submandibular Glands Among Three Developmental Stages Are Involved in Immune Functions
Cited by: 5
Author(s): Aili Wang, Zhibin Ji, Rong Xuan, Xiaodong Zhao, Lei Hou, Qing Li, Yunpeng Chu, Tianle Chao, Jianmin Wang
Software Mentions: 1
Published: over 5 years ago

10.3389/fgene.2020.00278

A Systematic Way to Infer the Regulation Relations of miRNAs on Target Genes and Critical miRNAs in Cancers
Cited by: 35
Author(s): Peng Xu, Qian Wu, Jing Yu, Yongsheng Rao, Zheng Kou, Gang Fang, Xiaolong Shi, Wenbin Liu, Henry Han
Software Mentions: 1
Published: over 6 years ago

10.3389/fgene.2021.728177

Updated Genome Assembly of Bighead Carp (Hypophthalmichthys nobilis) and Its Differences Between Male and Female on Genomic, Transcriptomic, and Methylation Level
Cited by: 5
Author(s): Bishi Fu, Ying Zhou, Haiyang Liu, Xin Yu, Jingou Tong
Software Mentions: 1
Published: about 5 years ago

10.7554/eLife.28046

Ubiquitination-dependent control of sexual differentiation in fission yeast
Cited by: 15
Author(s): Fabrizio Simonetti, Tito Candelli, Sébastien Léon, Domenico Libri, Mathieu Rougemaille
Software Mentions: 1
Published: about 9 years ago

10.1038/s41597-019-0101-y

Transcriptome profiles of three Muscat table grape cultivars to dissect the mechanism of terpene biosynthesis
Cited by: 5
Author(s): Lina Sun, Baoqing Zhu, Xuanyin Zhang, Guojun Zhang, Ailing Yan, Huiling Wang, Xiaoyue Wang, Huini Xu
Software Mentions: 1
Published: over 7 years ago

10.3389/fgene.2019.01360

Transcriptional Profiling Reveals the Regulatory Role of CXCL8 in Promoting Colorectal Cancer
Cited by: 16
Author(s): Jie Li, Qin Liu, Xuan Huang, Yurui Cai, Song Li, Qianrong Xie, Fuchuan Liu, Xiaochun Chen, Peng Xu, Fanwei Zeng, Yanpeng Chu, Fanxin Zeng
Software Mentions: 1
Published: almost 7 years ago

10.3389/fgene.2020.00246

Identification of MicroRNAs and Their Targets That Respond to Powdery Mildew Infection in Cucumber by Small RNA and Degradome Sequencing
Cited by: 13
Author(s): Xuewen Xu, Cailian Zhong, Min Keng Tan, Ya Kun Song, Xiaohua Qi, Qiang Xu, Xuehao Chen
Software Mentions: 1
Published: over 6 years ago

10.3389/fbioe.2020.00490

The Construction and Analysis of lncRNA–miRNA–mRNA Competing Endogenous RNA Network of Schwann Cells in Diabetic Peripheral Neuropathy
Cited by: 17
Author(s): Wang Cheng, Xiang Xu, Jing Chen, Yu Kang, Jiahe Guo, Dominik Duscher, Xiaofan Yang, Guojun Guo, Sen Ren, Hairong Xiong, Meng Yuan, Tao Jiang, Hans‐Günther Machens, Zhenbing Chen, Yanhua Chen
Software Mentions: 1
Published: over 6 years ago

10.3389/fbioe.2019.00249

Cinnamic Acid and Sorbic acid Conversion Are Mediated by the Same Transcriptional Regulator in Aspergillus niger
Cited by: 19
Author(s): Ronnie J.M. Lubbers, Adiphol Dilokpimol, Jorge C. Navarro-Muñoz, Mao Peng, Mei Wang, Anna Lipzen, Vivian Ng, Igor V. Grigoriev, Jaap Visser, Kristiina Hildén
Software Mentions: 1
Published: about 7 years ago

10.1038/s41597-019-0210-7

Transcriptomic profiling of cotton Gossypium hirsutum challenged with low-temperature gradients stress
Cited by: 13
Author(s): Zhibo Li, Zeng XiaoYan, Jianwei Xu, Ruihai Zhao, Wei Yinong
Software Mentions: 1
Published: about 7 years ago

10.1186/s12864-018-5135-6

Identification of transcription factor genes involved in anthocyanin biosynthesis in carrot (Daucus carota L.) using RNA-Seq
Cited by: 35
Author(s): Miyako Kodama, Henrik Brinch-Pedersen, Sheena Sharma, Inger Bæksted Holme, Bjarne Joernsgaard, Tsaneta Dzhanfezova, Daniel Buchvaldt Amby, Filipe Garrett Vieira, Shanlin Liu, M. Thomas P. Gilbert
Software Mentions: 1
Published: almost 8 years ago

10.3389/fbioe.2020.00809

Single-Sample Node Entropy for Molecular Transition in Pre-deterioration Stage of Cancer
Cited by: 7
Author(s): Chongyin Han, Jiayuan Zhong, Jiaqi Hu, Huisheng Liu, Rui Li, Fei Ling
Software Mentions: 1
Published: over 6 years ago

10.3389/fbioe.2019.00438

Identification of PGRMC1 as a Candidate Oncogene for Head and Neck Cancers and Its Involvement in Metabolic Activities
Cited by: 15
Author(s): Yue Zhao, Xiangyan Ruan
Software Mentions: 1
Published: almost 7 years ago

10.3389/fnbeh.2021.678102

Adolescent Stress Reduces Adult Morphine-Induced Behavioral Sensitization in C57BL/6J Mice
Cited by: 4
Author(s): Helen M. Kamens, Carley N. Miller, Jasmine I. Caulfield, Dana Zeid, W. J. Horton, Constanza P. Silva, Aswathy Sebastian, István Albert, Thomas J. Gould, Diana Fishbein, Patricia S. Grigson, Sonia A. Cavigelli
Software Mentions: 1
Published: over 5 years ago

10.3389/fnagi.2020.576678

Longitudinal Characterization of Transcriptomic, Functional, and Morphological Features in Human iPSC-Derived Neurons and Their Application to Investigate Translational Progranulin Disease Biology
Cited by: 3
Author(s): Gaëlle Robin, J. C. Evans, David N. Hauser, Paul Wren, Andreas Zembrzycki
Software Mentions: 1
Published: almost 6 years ago

10.1016/j.freeradbiomed.2020.10.322

The alarmone (p)ppGpp confers tolerance to oxidative stress during the stationary phase by maintenance of redox and iron homeostasis in Staphylococcus aureus
Cited by: 22
Author(s): Verena Nadin Fritsch, Vu Van Loi, Tobias Busche, Quach Ngoc Tung, Roland Lill, Petra Horvatek, Christiane Wolz, Jörn Kalinowski, Haike Antelmann
Software Mentions: 1
Published: almost 6 years ago

10.1080/20961790.2017.1349639

RNA-seq profiling reveals differentially expressed genes as potential markers for vital reaction in skin contusion: a pilot study
Cited by: 17
Author(s): Jian Xu, Rui Zhao, Ye Xue, Huan-Qin Xiao, Yanliang Sheng, Dong Zhao, Jie-Tao He, Hongyan Huang, Qi Wang, Huijun Wang
Software Mentions: 1
Published: over 9 years ago

10.1186/s12987-021-00255-2

Reduction in pericyte coverage leads to blood–brain barrier dysfunction via endothelial transcytosis following chronic cerebral hypoperfusion
Cited by: 32
Author(s): Zhengyu Sun, Chenhao Gao, Dandan Gao, Ruihua Sun, Wei Li, Feng‐Yu Wang, Yanliang Wang, Huixia Cao, Guoyu Zhou, Jiewen Zhang, Junkui Shang
Software Mentions: 1
Published: over 5 years ago

10.1093/femsec/fiy095

Cold adaptation and replicable microbial community development during long-term low-temperature anaerobic digestion treatment of synthetic sewage
Cited by: 25
Author(s): Ciara Keating, Dermot Hughes, Thérèse Mahony, Denise Cysneiros, Umer Zeeshan Ijaz, Colette Smith, Vincent O'Flaherty
Software Mentions: 1
Published: over 8 years ago

10.1002/2211-5463.13076

Gene expression profile of human follicle dermal papilla cells in response to Camellia japonica phytoplacenta extract
Cited by: 3
Author(s): Won Kyong Cho, Hyein Kim, Seung Hye Paek, Sooyun Kim, Hyo Hyun Seo, Jihyeok Song, Ok Hwa Lee, Jiae Min, Sang Jun Lee, Yeonhwa Jo, Hoseong Choi, Jeong Hun Lee, Sang Hyun Moh
Software Mentions: 1
Published: over 5 years ago

10.7554/eLife.46703

A Myt1 family transcription factor defines neuronal fate by repressing non-neuronal genes
Cited by: 21
Author(s): Joo Lee, Christina Taylor, Kristopher M. Barnes, Ao Shen, Emerson V. Stewart, Allison Chen, Yang Xiang, Zhejing Bao, Kang Shen
Software Mentions: 1
Published: about 7 years ago

10.1038/srep11126

Co-existence of intact stemness and priming of neural differentiation programs in mES cells lacking Trim71
Cited by: 38
Author(s): Sibylle Mitschka, Thomas Ulas, Tobias Goller, Karin Schneider, Angela Egert, Jérôme Mertens, Oliver Brüstle, Hubert Schorle, Marc Beyer, Kathrin Klee, Jia Xue, Patrick Günther, Kevin Baßler, Joachim L. Schultze, Waldemar Kolanus
Software Mentions: 1
Published: over 11 years ago

10.1186/s12864-019-6442-2

Identification of a novel anthocyanin synthesis pathway in the fungus Aspergillus sydowii H-1
Cited by: 25
Author(s): Congfan Bu, Qian Zhang, Jie Zeng, Xiyue Cao, Zhaonan Hao, Dan Qiao, Yi Cao, Hui Xu
Software Mentions: 1
Published: almost 7 years ago

10.1002/2211-5463.13019

Methylthioadenosine (MTA) boosts cell‐specific productivities of Chinese hamster ovary cultures: dosage effects on proliferation, cell cycle and gene expression
Cited by: 2
Author(s): Natascha Verhagen, Julia Zieringer, Ralf Takors
Software Mentions: 1
Published: almost 6 years ago

10.1038/srep13443

CADBURE: A generic tool to evaluate the performance of spliced aligners on RNA-Seq data
Cited by: 7
Author(s): Praveen Kumar, Thanh Hoang, Michael L. Robinson, Panagiotis A. Tsonis, Chun Liang
Software Mentions: 1
Published: about 11 years ago

10.1186/s12864-015-1788-6

High-throughput and quantitative genome-wide messenger RNA sequencing for molecular phenotyping
Cited by: 20
Author(s): John Collins, Neha Wali, Ian Sealy, James A. Morris, Richard White, Steven Leonard, David Jackson, Matthew C. Jones, Nathalie Smerdon, Jorge Zamora, Christopher M. Dooley, Samantha Carruthers, Jeffrey C. Barrett, Derek L. Stemple, Elisabeth M Busch-Nentwich
Software Mentions: 1
Published: about 11 years ago

10.1002/2211-5463.13132

Dkk1 inhibits malignant transformation induced by Bmi1 via the β‐catenin signaling axis in WB‐F344 oval cells
Cited by: 2
Author(s): Jinjun Ye, Le Xin, Jidong Liu, Tao Tang, Xiaoyong Bao, Yukuang Yan
Software Mentions: 1
Published: over 5 years ago

10.1038/srep14976

A high-throughput RNA-seq approach to profile transcriptional responses
Cited by: 23
Author(s): Gregory A Moyerbrailean, Gordon O Davis, Chris T. Harvey, Donovan Watza, Xiaoquan Wen, Roger Piqué-Regi, Francesca Luca
Software Mentions: 1
Published: almost 11 years ago

10.1096/fj.201701098R

Analysis of chromatin accessibility in decidualizing human endometrial stromal cells
Cited by: 28
Author(s): Pavle Vrljicak, Emma S. Lucas, Lauren Lansdowne, Raffaella Lucciola, Joanne Muter, Nigel P. Dyer, Jan J. Brosens, Sascha Ott
Software Mentions: 1
Published: almost 9 years ago

10.1186/s40662-020-00221-3

The critical role of m6A methylation in the pathogenesis of Graves' ophthalmopathy
Cited by: 13
Author(s): Liangru Zhu, Siyan Li, Shikun He, Qizhe Tong, Lejin Wang, Xiaohua Li, Xi Wu, Qingyu Meng, Enzhong Jin, Chuan Zhang, Tianyuan Li, Ningda Xu, Lvzhen Huang, Yi Wang, Mingwei Zhao
Software Mentions: 1
Published: almost 6 years ago

10.1038/srep20316

Dictyocaulus viviparus genome, variome and transcriptome elucidate lungworm biology and support future intervention
Cited by: 21
Author(s): Samantha N. McNulty, Christina Strübe, Bruce A. Rosa, John Martin, Rahul Tyagi, Young Jun Choi, Qi Wang, Kymberlie H. Pepin, Xu Zhang, Philip Ozersky, Richard K. Wilson, Paul W. Sternberg, Robin B. Gasser, Makedonka Mitreva
Software Mentions: 1
Published: over 10 years ago

10.1038/srep21962

Improved lipids, diastolic pressure and kidney function are potential contributors to familial longevity: a study on 60 Chinese centenarian families
Cited by: 13
Author(s): Yonghan He, Shao-Yan Pu, Fu-Hui Xiao, Xiao‐Qiong Chen, Dongjing Yan, Yaowen Liu, Rong Lin, Xiaoping Liao, Qin Yu, Libin Yang, Xiaoxi Yang, Ming-Xia Ge, Ying Liu, Jianjun Jiang, Wei Cai, Qing‐Peng Kong
Software Mentions: 1
Published: over 10 years ago

10.1038/srep22416

RNA sequencing reveals region-specific molecular mechanisms associated with epileptogenesis in a model of classical hippocampal sclerosis
Cited by: 18
Author(s): André Schwambach Vieira, A. H. de Matos, Amanda Morato do Canto, Cristiane S. Rocha, Benilton Carvalho, Vinícius D'Ávila Bitencourt Pascoal, Braxton A. Norwood, Sebastian Bauer, Felix Rosenow, Rovílson Gilioli, Fernando Cendes, Íscia Lopes‐Cendes
Software Mentions: 1
Published: over 10 years ago

10.1038/srep22611

Dispersal of Bacillus subtilis and its effect on strawberry phyllosphere microbiota under open field and protection conditions
Cited by: 53
Author(s): Feng Wei, Xiaoping Hu, Xiangming Xu
Software Mentions: 1
Published: over 10 years ago

10.1038/s12276-019-0352-x

Bach2 deficiency leads autoreactive B cells to produce IgG autoantibodies and induce lupus through a T cell-dependent extrafollicular pathway
Cited by: 44
Author(s): Eunkyeong Jang, Un Kyo Kim, Kiseok Jang, Young Soo Song, Ji Young, Hansol Yi, Jeehee Youn
Software Mentions: 1
Published: almost 7 years ago

10.18632/oncotarget.18328

A keratinocyte life cycle model identifies novel host genome regulation by human papillomavirus 16 relevant to HPV positive head and neck cancer
Cited by: 36
Author(s): Michael R. Evans, Claire D. James, Öonagh Loughran, Tara J. Nulton, Xu Wang, Molly L. Bristol, Brad Windle, Iain M. Morgan
Software Mentions: 1
Published: over 9 years ago

10.1038/s12276-020-0425-x

The interdependence of mammary-specific super-enhancers and their native promoters facilitates gene activation during pregnancy
Cited by: 1
Author(s): Xianke Zeng, Hye Kyung Lee, Chaochen Wang, Precious Achikeh, Chengyu Liu, Lothar Hennighausen
Software Mentions: 1
Published: over 6 years ago

10.1111/eva.13162

The molecular mechanisms that determine different degrees of polyphagy in the Bemisia tabaci species complex
Cited by: 11
Author(s): Osnat Malka, Ester Feldmesser, Sharon van Brunschot, Diego Santos-García, Wenfeng Han, Susan Seal, John Colvin, Shai Morin
Software Mentions: 1
Published: almost 6 years ago

10.1111/eva.13129

Comparison of anadromous and landlocked Atlantic salmon genomes reveals signatures of parallel and relaxed selection across the Northern Hemisphere
Cited by: 11
Author(s): Erik Kjærner-Semb, Rolf B. Edvardsen, Fernando Ayllón, Petra Vogelsang, Tomasz Furmanek, Carl-Johan Rubin, А. Е. Веселов, Tom Ole Nilsen, Stephen D. McCormick, Craig R. Primmer, Anna Wargelius
Software Mentions: 1
Published: about 6 years ago

10.1186/s12864-020-06799-1

Chi-miR-30b-5p inhibits dermal papilla cells proliferation by targeting CaMKIIδ gene in cashmere goat
Cited by: 10
Author(s): Yuelang Zhang, Sizhe Xia, Tianci Wang, Shanhe Wang, Dan Yuan, Fang Li, Xin Wang
Software Mentions: 1
Published: over 6 years ago

10.7554/eLife.65234

A non-genetic, cell cycle-dependent mechanism of platinum resistance in lung adenocarcinoma
Cited by: 13
Author(s): Álvaro González-Rajal, Kamila A. Marzec, Rachael A. McCloy, Max Nobis, Venessa T. Chin, Jordan F. Hastings, Kaitao Lai, Marina Kennerson, William E. Hughes, Vijesh Vaghjiani, Paul Timpson, Jason E. Cain, D. Neil Watkins, David R. Croucher, Andrew Burgess
Software Mentions: 1
Published: over 5 years ago

10.1111/eva.12487

Transcriptional mechanisms underlying life-history responses to climate change in the three-spined stickleback
Cited by: 22
Author(s): Sin‐Yeon Kim, María M. Costa, Anna Esteve‐Codina, Alberto Velando
Software Mentions: 1
Published: over 9 years ago

10.1111/acel.13295

Ageing promotes early T follicular helper cell differentiation by modulating expression of RBPJ
Cited by: 17
Author(s): Louise M. C. Webb, Sigrid Fra-Bidó, Silvia Innocentin, Louise S. Matheson, Noudjoud Attaf, Alexandre Bignon, Julien Novarino, Nicolas Fazilleau, Michelle A. Linterman
Software Mentions: 1
Published: almost 6 years ago

10.1155/2021/6637513

Transcriptome Profiling of Human Follicle Dermal Papilla Cells in response to Porphyra-334 Treatment by RNA-Seq
Cited by: 6
Author(s): Su Yeon Kim, Won Kyong Cho, Hyein Kim, Seung Hye Paek, Sung Joo Jang, Yeonhwa Jo, Hoseong Choi, Jeong Hun Lee, Sang Hyun Moh
Software Mentions: 1
Published: almost 6 years ago

10.1155/2019/7182865

Sensitive Biomarker Analysis of Xue-Fu-Zhu-Yu Capsule for Patients with Qi Stagnation and Blood Stasis Pattern: A Nested Case-Control Study
Cited by: 1
Author(s): Guang Chen, Hong He, Kun Hu, Jialiang Gao, Jun Li, Mei Han, Jie Wang
Software Mentions: 1
Published: almost 7 years ago

10.1186/s40478-020-00932-7

Common gene expression signatures in Parkinson’s disease are driven by changes in cell composition
Cited by: 34
Author(s): Gonzalo S. Nido, Fiona Dick, Lilah Toker, Kjell Petersen, Guido Alves, Ole‐Bjørn Tysnes, Inge Jonassen, Kristoffer Haugarvoll, Charalampos Tzoulis
Software Mentions: 1
Published: over 6 years ago

10.7554/eLife.60939

Reprogramming of bone marrow myeloid progenitor cells in patients with severe coronary artery disease
Cited by: 19
Author(s): Marlies P. Noz, Siroon Bekkering, Laszlo Groh, Tim Mj Nielen, E. J. P. Lamfers, Andreas Schlitzer, Saloua El Messaoudi, Niels van Royen, Erik Huys, Frank Preijers, E. Smeets, Erik H.J.G. Aarntzen, Bowen Zhang, Li Yang, M.E.J. Bremmers, W.J. van der Velden, Harry Dolstra, Leo A. B. Joosten, Marc E. Gomes, Mihai G. Netea, Niels P. Riksen
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12864-017-4084-9

Transcriptome analysis reveals differences in mechanisms regulating cessation of luteal function in pregnant and non-pregnant dogs
Cited by: 18
Author(s): Sophie Zatta, Hubert Rehrauer, Aykut Gram, Alois Boos, Mariusz P. Kowalewski
Software Mentions: 1
Published: about 9 years ago

10.1155/2021/9920364

Synergistic Regulation of Microglia Gene Expression by Natural Molecules in Herbal Medicine
Cited by: 3
Author(s): Qiburi Qiburi, Temuqile Temuqile, Huricha Baigude
Software Mentions: 1
Published: about 5 years ago

10.1186/s12864-019-5617-1

Genome-wide identification and abiotic stress-responsive pattern of heat shock transcription factor family in Triticum aestivum L.
Cited by: 60
Author(s): Shuonan Duan, Binhui Liu, Yuanyuan Zhang, Guoliang Li, Xiulin Guo
Software Mentions: 1
Published: over 7 years ago

10.1038/srep33660

Characterization of the mechanism of prolonged adaptation to osmotic stress of Jeotgalibacillus malaysiensis via genome and transcriptome sequencing analyses
Cited by: 36
Author(s): Amira Suriaty Yaakop, Kok‐Gan Chan, Robson Ee, Yan Lue Lim, Siew Kim Lee, Fazilah Abd Manan, Kian Mau Goh
Software Mentions: 1
Published: about 10 years ago

10.1111/acel.13231

Age‐related differences in the translational landscape of mammalian oocytes
Cited by: 10
Author(s): Edgar Del Llano, Tomáš Mašek, Lenka Gahurová, Martin Pospíšek, Markéta Končická, Anna Jindrova, Denisa Jansová, Rajan Iyyappan, Kristina Roučová, Alexander W. Bruce, Michal Kubelka, Andrej Šušor
Software Mentions: 1
Published: about 6 years ago

10.1038/srep35323

Effects of aged garlic extract and FruArg on gene expression and signaling pathways in lipopolysaccharide-activated microglial cells
Cited by: 15
Author(s): Hailong Song, Yuan Lu, Zhe Qu, Valeri V. Mossine, Matthew B. Martin, Jie Hou, Jiankun Cui, Brenda A. Peculis, Thomas P. Mawhinney, Jianlin Cheng, C. Michael Greenlief, Kevin L. Fritsche, Francis J. Schmidt, Ronald B. Walter, Dennis B. Lubahn, Grace Y. Sun
Software Mentions: 1
Published: about 10 years ago

10.1155/2020/6052461

Morphological and Transcriptome Analyses Provide Insights into Growth Inhibition of Trichophyton rubrum Caused by Laser Irradiation
Cited by: 2
Author(s): Ruina Zhang, Zhao Jun, Lin-Feng Li
Software Mentions: 1
Published: over 6 years ago

10.1038/srep35852

Extensive transcriptome analysis correlates the plasticity of Entamoeba histolytica pathogenesis to rapid phenotype changes depending on the environment
Cited by: 38
Author(s): Christian Weber, Mikael Koutero, Marie‐Agnès Dillies, Hugo Varet, César López‐Camarillo, Jean Yves Coppée, Chung-Chau Hon, Nancy Guillén
Software Mentions: 1
Published: about 10 years ago

10.1038/srep35830

Establishment of a translational endothelial cell model using directed differentiation of induced pluripotent stem cells from Cynomolgus monkey
Cited by: 8
Author(s): Eva C. Thoma, Tobias Heckel, David M. Keller, Nicolas Giroud, Brian C. Leonard, Klaus Christensen, Adrian Roth, Cristina Bertinetti-Lapatki, Martin Gräf, Christoph Patsch
Software Mentions: 1
Published: almost 10 years ago

10.1038/srep36007

Analyses of RNA-Seq and sRNA-Seq data reveal a complex network of anti-viral defense in TCV-infected Arabidopsis thaliana
Cited by: 16
Author(s): Chao Wu, Xinyue Li, Song Guo, Sek‐Man Wong
Software Mentions: 1
Published: almost 10 years ago

10.1002/eji.201746960

Mesenteric lymph node stromal cell-derived extracellular vesicles contribute to peripheral de novo induction of Foxp3+ regulatory T cells
Cited by: 12
Author(s): Mária Pásztói, Joern Pezoldt, Michael Beckstette, Christoph Lipps, Dagmar Wirth, Manfred Rohde, Krisztina Pálóczi, Edit I. Buzás, Jochen Huehn
Software Mentions: 1
Published: about 9 years ago

10.18632/oncotarget.19386

Implications of PI3K/AKT inhibition on REST protein stability and neuroendocrine phenotype acquisition in prostate cancer cells
Cited by: 33
Author(s): Ruiqui Chen, Yinan Li, Ralph Buttyan, Xuesen Dong
Software Mentions: 1
Published: over 9 years ago

10.1038/srep37110

The caste- and sex-specific DNA methylome of the termite Zootermopsis nevadensis
Cited by: 104
Author(s): Karl M. Glastad, Kaustubh Gokhale, Jürgen Liebig, Michael A. D. Goodisman
Software Mentions: 1
Published: almost 10 years ago

10.7554/eLife.42068

Analysis of the genomic architecture of a complex trait locus in hypertensive rat models links Tmem63c to kidney damage
Cited by: 18
Author(s): Angela Schulz, Nicola Victoria Müller, Nina A. van de Lest, Andreas Eisenreich, Martina Schmidbauer, Andrei Barysenka, Bettina Purfürst, Anje Sporbert, Theodor Lorenzen, Alexander M Meyer, Laura Herlan, Anika Witten, Frank Rühle, Weibin Zhou, Emile de Heer, Marion Scharpfenecker, Daniela Panáková, Monika Stoll, Reinhold Kreutz
Software Mentions: 1
Published: over 7 years ago

10.1186/s12864-018-4694-x

Diapause in a tropical oil-collecting bee: molecular basis unveiled by RNA-Seq
Cited by: 38
Author(s): Priscila Karla Ferreira Santos, Natália de Souza Araujo, Elaine Françoso, Alexandre R. Zuntini, Maria Cristina Arias
Software Mentions: 1
Published: over 8 years ago

10.1186/s12864-017-4174-8

Transcriptional analysis of sweet orange trees co-infected with ‘Candidatus Liberibacter asiaticus’ and mild or severe strains of Citrus tristeza virus
Cited by: 9
Author(s): Shimin Fu, Jonathan Shao, Cristina Paul, Changyong Zhou, John Hartung
Software Mentions: 1
Published: almost 9 years ago

10.1186/s13072-021-00414-7

Developmental programming of DNA methylation and gene expression patterns is associated with extreme cardiovascular tolerance to anoxia in the common snapping turtle
Cited by: 7
Author(s): Ilan M. Ruhr, Jacob Bierstedt, Turk Rhen, Debojyoti Das, Sunil Kumar Singh, Soleille Miller, Dane A. Crossley, Gina L. J. Galli
Software Mentions: 1
Published: about 5 years ago

10.15252/emmm.201505088

Retracted: Haemophilus influenzae responds to glucocorticoids used in asthma therapy by modulation of biofilm formation and antibiotic resistance
Cited by: 19
Author(s): Chris Earl, Teh Wooi Keong, Shi-Qi An, Sarah Murdoch, Yvonne McCarthy, Junkal Garmendia, Joseph Ward, J. Maxwell Dow, Liang Yang, George A. O’Toole, Robert P. Ryan
Software Mentions: 1
Published: over 11 years ago

10.1038/srep37770

Genome-wide transcriptome analysis revealed organelle specific responses to temperature variations in algae
Cited by: 34
Author(s): HyeonSeok Shin, Seong-Joo Hong, Chan Yul Yoo, Mi-Ae Han, Hookeun Lee, Hyung‐Kyoon Choi, Suhyung Cho, Choul-Gyun Lee, Byung-Kwan Cho
Software Mentions: 1
Published: almost 10 years ago

10.7554/eLife.43570

Guy1, a Y-linked embryonic signal, regulates dosage compensation in Anopheles stephensi by increasing X gene expression
Cited by: 14
Author(s): Yumin Qi, Yang Wu, Randy Saunders, Xiaoguang Chen, Chunhong Mao, James K. Biedler, Zhijian Tu
Software Mentions: 1
Published: over 7 years ago

10.15252/emmm.201809976

<scp>ADAM</scp> 17 selectively activates the <scp>IL</scp> ‐6 trans‐signaling/ <scp>ERK MAPK</scp> axis in <scp>KRAS</scp> ‐addicted lung cancer
Cited by: 58
Author(s): Mohamed I. Saad, Sultan Alhayyani, Louise McLeod, Liang Yu, Mohammad Alanazi, Virginie Deswaerte, Ke Tang, Thierry Jardé, Julian A. Smith, Zdenka Prodanovic, Michelle D. Tate, Jesse J. Balic, D. Neil Watkins, Jason E. Cain, Steven Bozinovski, Elizabeth Algar, Tomohiro Kohmoto, Hiromichi Ebi, Walter Ferlin, Christoph Garbers, Saleela Ruwanpura, Irit Sagi, Stefan Rose‐John, Brendan J. Jenkins
Software Mentions: 1
Published: over 7 years ago

10.1038/srep40325

KANK1 inhibits cell growth by inducing apoptosis through regulating CXXC5 in human malignant peripheral nerve sheath tumors
Cited by: 22
Author(s): Zelin Cui, Yingjia Shen, Kenny H Chen, Suresh K. Mittal, Jer-Yen Yang, Guangjun Zhang
Software Mentions: 1
Published: almost 10 years ago

10.15252/embj.2019101552

Hyperoxidation of mitochondrial peroxiredoxin limits H 2 O 2 ‐induced cell death in yeast
Cited by: 42
Author(s): Gaetano Calabrese, Esra Peker, Prince Saforo Amponsah, Martin Hoehne, Trine Riemer, Marie Mai, Gerd Patrick Bienert, Marcel Deponte, Bruce Morgan, Jan Riemer
Software Mentions: 1
Published: about 7 years ago

10.1038/srep40618

Identification of misexpressed genetic elements in hybrids between Drosophila-related species
Cited by: 27
Author(s): Hélène Lopez-Maestre, Elias Alberto Gutierrez Carnelossi, Vincent Lacroix, Nelly Burlet, Bruno Mugat, Séverine Chambeyron, Claudia M. A. Carareto, Cristina Vieira
Software Mentions: 1
Published: almost 10 years ago

10.15252/embj.2019101533

Distinct IL‐1α‐responsive enhancers promote acute and coordinated changes in chromatin topology in a hierarchical manner
Cited by: 19
Author(s): Sinah-Sophia Weiterer, Johanna Meier-Soelch, Theodore Georgomanolis, Athanasia Mizi, Anna Beyerlein, H. Weiser, Lilija Brant, Christin Mayr-Buro, Liane Jurida, Knut Beuerlein, H.‐Arno J. Müller, Axel Weber, Ulas Tenekeci, Oliver Dittrich–Breiholz, Marek Bartkuhn, Andrea Nist, Thorsten Stiewe, Wilfred F. J. van IJcken, Tabea Riedlinger, M. Lienhard Schmitz, Argyris Papantonis, Michael Kracht
Software Mentions: 1
Published: almost 7 years ago

10.1186/s12864-020-07339-7

Identification of genes associated with the biosynthesis of unsaturated fatty acid and oil accumulation in herbaceous peony ‘Hangshao’ (Paeonia lactiflora ‘Hangshao’) seeds based on transcriptome analysis
Cited by: 15
Author(s): Jiasong Meng, Yuhan Tang, Jing Sun, Daqiu Zhao, Keliang Zhang, Jun Tao
Software Mentions: 1
Published: over 5 years ago

10.1186/s13550-019-0519-4

PET imaging of hepatocellular carcinoma with anti-1-amino-3-[18F]fluorocyclobutanecarboxylic acid in comparison with l-[S-methyl-11C]methionine
Cited by: 2
Author(s): О. Н. Сергеева, Yifan Zhang, Jonathan Kenyon, Galen Miller‐Atkins, Chunying Wu, Renuka Iyer, Sandra Sexton, Patrick Wojtylak, Amad Awadallah, Xin Wei, E. Ricky Chan, James K. O’Donnel, Zhenghong Lee
Software Mentions: 1
Published: over 7 years ago

10.1038/srep41063

Insight into the essential role of the Helicobacter pylori HP1043 orphan response regulator: genome-wide identification and characterization of the DNA-binding sites
Cited by: 30
Author(s): Simone Pelliciari, Eva Pinatel, Andrea Vannini, Clelia Peano, Simone Puccio, Gianluca De Bellis, Alberto Danielli, Vincenzo Scarlato, Davide Roncarati
Software Mentions: 1
Published: over 9 years ago

10.1186/s12864-020-07070-3

Metabolic and transcriptome responses of RNAi-mediated AMPKα knockdown in Tribolium castaneum
Cited by: 7
Author(s): Heng Jiang, Nan Zhang, Caihong Ji, Xiangkun Meng, Kun Qian, Zheng Yi, Jianjun Wang
Software Mentions: 1
Published: about 6 years ago

10.1080/10717544.2021.1986604

Alginate nanogels-based thermosensitive hydrogel to improve antidepressant-like effects of albiflorin via intranasal delivery
Cited by: 12
Author(s): Dong Xu, Tao Qiao, Yue Wang, Qiang-Song Wang, Yuan‐Lu Cui
Software Mentions: 1
Published: almost 6 years ago

10.1038/srep42225

Primary macrophages and J774 cells respond differently to infection with Mycobacterium tuberculosis
Cited by: 78
Author(s): Núria Andreu, Jody Phelan, Paola Flórez de Sessions, Jacqueline M. Cliff, Taane G. Clark, Martin L. Hibberd
Software Mentions: 1
Published: over 9 years ago

10.1242/dmm.022848

Spontaneous shaker rat mutant – a new model for X-linked tremor-ataxia
Cited by: 13
Author(s): Karla P. Figueroa, Sharan Paul, Tito Calì, Raffaele Lopreiato, Sukanya Karan, Martina Frizzarin, Darren Ames, Ginevra Zanni, Marisa Brini, Warunee Dansithong, Brett Milash, Daniel R. Scoles, Ernesto Carafoli, Stefan M. Pulst
Software Mentions: 1
Published: almost 11 years ago

Projects: bioconductor: DESeq2

Enhanced Analysis

Science Score: 100/100

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Papers Mentioning DESeq2 9,583