bioconductor: DESeq2 | Projects | Ecosyste.ms: Papers

10.3390/ijms22147557

A Complex Network of Sigma Factors and sRNA StsR Regulates Stress Responses in R. sphaeroides
Cited by: 1
Author(s): Katrin M. H. Eisenhardt, Bernhardt Remes, Julian Grützner, Daniel-Timon Spanka, Andreas Jäger, Gabriele Klug
Software Mentions: 1
Published: about 5 years ago

10.1111/eva.13162

The molecular mechanisms that determine different degrees of polyphagy in the Bemisia tabaci species complex
Cited by: 11
Author(s): Osnat Malka, Ester Feldmesser, Sharon van Brunschot, Diego Santos-García, Wenfeng Han, Susan Seal, John Colvin, Shai Morin
Software Mentions: 1
Published: almost 6 years ago

10.1111/jcmm.16060

SLC1A3 promotes gastric cancer progression via the PI3K/AKT signalling pathway
Cited by: 37
Author(s): Liyi Xu, Jiamin Chen, Litao Jia, Xiao Chen, Faycal Awaleh Moumin, Jianting Cai
Software Mentions: 1
Published: almost 6 years ago

10.1111/eva.13129

Comparison of anadromous and landlocked Atlantic salmon genomes reveals signatures of parallel and relaxed selection across the Northern Hemisphere
Cited by: 11
Author(s): Erik Kjærner-Semb, Rolf B. Edvardsen, Fernando Ayllón, Petra Vogelsang, Tomasz Furmanek, Carl-Johan Rubin, А. Е. Веселов, Tom Ole Nilsen, Stephen D. McCormick, Craig R. Primmer, Anna Wargelius
Software Mentions: 1
Published: about 6 years ago

10.1111/jcmm.16142

Analysis of differentially expressed genes in oral epithelial cells infected with Fusobacterium nucleatum for revealing genes associated with oral cancer
Cited by: 18
Author(s): Shuwei Zhang, Chen Li, Zhiying Zhang, Yuchao Li, Qian Li, Fei Geng, Junchao Liu, Yaping Pan
Software Mentions: 1
Published: almost 6 years ago

10.1111/eva.12487

Transcriptional mechanisms underlying life-history responses to climate change in the three-spined stickleback
Cited by: 22
Author(s): Sin‐Yeon Kim, María M. Costa, Anna Esteve‐Codina, Alberto Velando
Software Mentions: 1
Published: over 9 years ago

10.1155/2021/6637513

Transcriptome Profiling of Human Follicle Dermal Papilla Cells in response to Porphyra-334 Treatment by RNA-Seq
Cited by: 6
Author(s): Su Yeon Kim, Won Kyong Cho, Hyein Kim, Seung Hye Paek, Sung Joo Jang, Yeonhwa Jo, Hoseong Choi, Jeong Hun Lee, Sang Hyun Moh
Software Mentions: 1
Published: over 5 years ago

10.1155/2019/7182865

Sensitive Biomarker Analysis of Xue-Fu-Zhu-Yu Capsule for Patients with Qi Stagnation and Blood Stasis Pattern: A Nested Case-Control Study
Cited by: 1
Author(s): Guang Chen, Hong He, Kun Hu, Jialiang Gao, Jun Li, Mei Han, Jie Wang
Software Mentions: 1
Published: almost 7 years ago

10.1111/jcmm.16499

Potential role of FoxO3a in the regulation of trophoblast development and pregnancy complications
Cited by: 7
Author(s): Hao Chen, Xin Tang, Ting-Li Han, Jing Zhu, Wei Zhou, Philip N. Baker, Chen Chang, Hua Zhang
Software Mentions: 1
Published: over 5 years ago

10.1186/s12864-017-4084-9

Transcriptome analysis reveals differences in mechanisms regulating cessation of luteal function in pregnant and non-pregnant dogs
Cited by: 18
Author(s): Sophie Zatta, Hubert Rehrauer, Aykut Gram, Alois Boos, Mariusz P. Kowalewski
Software Mentions: 1
Published: about 9 years ago

10.1155/2021/9920364

Synergistic Regulation of Microglia Gene Expression by Natural Molecules in Herbal Medicine
Cited by: 3
Author(s): Qiburi Qiburi, Temuqile Temuqile, Huricha Baigude
Software Mentions: 1
Published: about 5 years ago

10.1111/jcmm.16406

The circulatory small non‐coding RNA landscape in community‐acquired pneumonia on intensive care unit admission
Cited by: 3
Author(s): Hina Khan, Aldo Jongejan, Lonneke A. van Vught, Janneke Horn, Marcus J. Schultz, Aeilko H. Zwinderman, Olaf L. Cremer, Marc J. M. Bonten, Tom van der Poll, Brendon P. Scicluna
Software Mentions: 1
Published: about 5 years ago

10.1111/acel.13231

Age‐related differences in the translational landscape of mammalian oocytes
Cited by: 10
Author(s): Edgar Del Llano, Tomáš Mašek, Lenka Gahurová, Martin Pospíšek, Markéta Končická, Anna Jindrova, Denisa Jansová, Rajan Iyyappan, Kristina Roučová, Alexander W. Bruce, Michal Kubelka, Andrej Šušor
Software Mentions: 1
Published: about 6 years ago

10.1155/2020/6052461

Morphological and Transcriptome Analyses Provide Insights into Growth Inhibition of Trichophyton rubrum Caused by Laser Irradiation
Cited by: 2
Author(s): Ruina Zhang, Zhao Jun, Lin-Feng Li
Software Mentions: 1
Published: over 6 years ago

10.1002/eji.201746960

Mesenteric lymph node stromal cell-derived extracellular vesicles contribute to peripheral de novo induction of Foxp3+ regulatory T cells
Cited by: 12
Author(s): Mária Pásztói, Joern Pezoldt, Michael Beckstette, Christoph Lipps, Dagmar Wirth, Manfred Rohde, Krisztina Pálóczi, Edit I. Buzás, Jochen Huehn
Software Mentions: 1
Published: about 9 years ago

10.1186/s12864-019-5617-1

Genome-wide identification and abiotic stress-responsive pattern of heat shock transcription factor family in Triticum aestivum L.
Cited by: 60
Author(s): Shuonan Duan, Binhui Liu, Yuanyuan Zhang, Guoliang Li, Xiulin Guo
Software Mentions: 1
Published: over 7 years ago

10.1242/jcs.190959

REV-ERBα influences stability and nuclear localization of the glucocorticoid receptor
Cited by: 25
Author(s): Takashi Okabe, Rohit Chavan, Sara Simões Costa, Andrea Brenna, Jürgen A. Ripperger, Urs Albrecht
Software Mentions: 1
Published: over 10 years ago

10.1242/jcs.203612

The requirement of IRE1-XBP1 in resolving physiological stress during Drosophila development
Cited by: 31
Author(s): Huai-Wei Huang, Xiaomei Zeng, Taiyoun Rhim, David Ron, Hyung Don Ryoo
Software Mentions: 1
Published: over 9 years ago

10.1242/jcs.223453

The ER membrane protein complex (EMC) promotes biogenesis of sterol-related enzymes maintaining cholesterol homeostasis
Cited by: 72
Author(s): Norbert Volkmar, Maria-Laetitia Thezenas, Sharon M. Louie, Szymon Juszkiewicz, Daniel K. Nomura, Ramanujan S. Hegde, Benedikt M. Kessler, John C. Christianson
Software Mentions: 1
Published: over 8 years ago

10.1186/s13072-021-00414-7

Developmental programming of DNA methylation and gene expression patterns is associated with extreme cardiovascular tolerance to anoxia in the common snapping turtle
Cited by: 7
Author(s): Ilan M. Ruhr, Jacob Bierstedt, Turk Rhen, Debojyoti Das, Sunil Kumar Singh, Soleille Miller, Dane A. Crossley, Gina L. J. Galli
Software Mentions: 1
Published: about 5 years ago

10.1186/s40793-019-0344-4

Fast response of fungal and prokaryotic communities to climate change manipulation in two contrasting tundra soils
Cited by: 11
Author(s): Jana Voříšková, Bo Elberling, Anders Priemé
Software Mentions: 1
Published: about 7 years ago

10.1186/s12974-015-0431-4

Minocycline counter-regulates pro-inflammatory microglia responses in the retina and protects from degeneration
Cited by: 112
Author(s): Rebecca Scholz, Markus Sobotka, Albert Caramoy, Thomas Stempfl, Christoph Moehle, Thomas Langmann
Software Mentions: 1
Published: almost 11 years ago

10.1242/jcs.252973

M. tuberculosisinfection of human iPSDM reveals complex membrane dynamics during xenophagy evasion
Cited by: 30
Author(s): Elliott M. Bernard, Antony Fearns, Claudio Bussi, Pierre Santucci, Christopher J. Peddie, Rachel J. Lai, Lucy Collinson, Maximiliano G. Gutierrez
Software Mentions: 1
Published: over 6 years ago

10.1186/s12864-018-4694-x

Diapause in a tropical oil-collecting bee: molecular basis unveiled by RNA-Seq
Cited by: 38
Author(s): Priscila Karla Ferreira Santos, Natália de Souza Araujo, Elaine Françoso, Alexandre R. Zuntini, Maria Cristina Arias
Software Mentions: 1
Published: over 8 years ago

10.1186/s12199-019-0840-6

Transcriptome analysis of the hippocampus in environmental noise-exposed SAMP8 mice reveals regulatory pathways associated with Alzheimer’s disease neuropathology
Cited by: 10
Author(s): Donghong Su, Wenlong Li, Huimin Chi, Honglian Yang, Xiaojun She, Kun Wang, Xiujie Gao, Kefeng Ma, Ming Zhang, Bo Cui
Software Mentions: 1
Published: over 6 years ago

10.1186/s12940-019-0535-x

Transcriptome-wide analysis of changes in the fetal placenta associated with prenatal arsenic exposure in the New Hampshire Birth Cohort Study
Cited by: 19
Author(s): Emily F. Winterbottom, Yuguang Ban, Xiaodian Sun, Anthony J. Capobianco, Carmen J. Marsit, Xi Chen, Lily Wang, Margaret R. Karagas, David J. Robbins
Software Mentions: 1
Published: almost 7 years ago

10.1530/ERC-18-0134

Oncometabolite induced primary cilia loss in pheochromocytoma
Cited by: 7
Author(s): Samuel O'Toole, David S. Watson, Tatiana Novoselova, Lisa E.L. Romano, Peter King, Teisha Y. Bradshaw, Claire Thompson, Martin M. Knight, Tyson V. Sharp, Michael R. Barnes, Umasuthan Srirangalingam, William M Drake, J. Paul Chapple
Software Mentions: 1
Published: over 7 years ago

10.1080/22221751.2019.1700762

Transcriptional response to metal starvation in the emerging pathogen Mycoplasma genitalium is mediated by Fur-dependent and –independent regulatory pathways
Cited by: 6
Author(s): Carlos Martínez-Torró, Sergi Torres-Puig, Marta Monge, Lucía Sánchez-Alba, Miguel González-Martín, Marina Marcos-Silva, Alex Perálvarez‐Marín, Françesc Canals, Enrique Querol, Jaume Piñol, Óscar Q. Pich
Software Mentions: 1
Published: almost 7 years ago

10.1002/ece3.7966

Extensive alternative splicing triggered by mitonuclear mismatch in naturally introgressed Rhinolophus bats
Cited by: 2
Author(s): Wenli Chen, Xiuguang Mao
Software Mentions: 1
Published: about 5 years ago

10.3390/ijms22147473

Global Transcriptional Analyses of the Wnt-Induced Development of Neural Stem Cells from Human Pluripotent Stem Cells
Cited by: 5
Author(s): Bingchun Liu, Fang-Yuan Liu, Xinyue Gao, Yang-Lin Chen, Qiao-Qiao Meng, Yongli Song, Xihe Li, Siqin Bao
Software Mentions: 1
Published: about 5 years ago

10.1172/JCI130340

Extrahypothalamic GABAergic nociceptin–expressing neurons regulate AgRP neuron activity to control feeding behavior
Cited by: 19
Author(s): Mark A. Smith, Agharul I. Choudhury, Justyna Glegola, Paulius Viskaitis, Elaine E. Irvine, pedro caldas custodio de campos silva, Sanjay Khadayate, Hanns Ulrich Zeilhofer, Dominic J. Withers
Software Mentions: 1
Published: almost 7 years ago

10.1186/s12864-017-4174-8

Transcriptional analysis of sweet orange trees co-infected with ‘Candidatus Liberibacter asiaticus’ and mild or severe strains of Citrus tristeza virus
Cited by: 9
Author(s): Shimin Fu, Jonathan Shao, Cristina Paul, Changyong Zhou, John Hartung
Software Mentions: 1
Published: almost 9 years ago

10.1186/s12284-021-00512-w

Characterization and Evaluation of Transgenic Rice Pyramided with the Pi Genes Pib, Pi25 and Pi54
Cited by: 8
Author(s): Peng Ma, Lin X, Xingjia Xiang, Haiyan Ren, Xiaoqin Fan, Kegui Chen
Software Mentions: 1
Published: about 5 years ago

10.1002/ece3.5100

The harmful algae,Cochlodinium polykrikoidesandAureococcus anophagefferens, elicit stronger transcriptomic and mortality response in larval bivalves (Argopecten irradians) than climate change stressors
Cited by: 7
Author(s): Andrew W. Griffith, Matthew J. Harke, Elizabeth DePasquale, Dianna L. Berry, Christopher J. Gobler
Software Mentions: 1
Published: over 7 years ago

10.1016/j.xpro.2021.100447

Application of high-throughput 5′P sequencing for the study of co-translational mRNA decay
Cited by: 4
Author(s): Yujie Zhang, Vicent Pelechano
Software Mentions: 1
Published: over 5 years ago

10.1002/ece3.5413

Gene expression correlates of facultative predation in the blow flyChrysomya rufifacies(Diptera: Calliphoridae)
Cited by: 6
Author(s): Meaghan L. Pimsler, Sing‐Hoi Sze, Sunday Saenz, Shuhua Fu, Jeffery K. Tomberlin, Aaron M. Tarone
Software Mentions: 1
Published: about 7 years ago

10.1016/j.xpro.2021.100716

Protocol to generate and characterize biofouling transformants of a model marine diatom
Cited by: 0
Author(s): Weiqi Fu, Bushra Dohai, Diana Charles El Assal, Sarah Daakour, Amnah Alzahmi, David R. Nelson, Ashish Jaiswal, Alexandra Mystikou, Mehar Sultana, James Weston, Kourosh Salehi‐Ashtiani
Software Mentions: 1
Published: about 5 years ago

10.1002/ece3.5563

Little evidence of adaptation potential to ocean acidification in sea urchins living in “Future Ocean” conditions at a CO2 vent
Cited by: 16
Author(s): Sven Uthicke, Nandan P. Deshpande, Michelle Liddy, Frances Patel, Miles D. Lamare, Marc R. Wilkins
Software Mentions: 1
Published: about 7 years ago

10.1093/schbul/sby017.541

F10. DIFFERENTIAL EXPRESSION OF MICRORNAS IN CEREBROSPINAL FLUID AND PLASMA SAMPLES IN SCHIZOPHRENIA
Cited by: 5
Author(s): Juan Gallego, Eric Alsop, Todd Lencz, Kendall Van Keuren‐Jensen, Anil K. Malhotra
Software Mentions: 1
Published: over 8 years ago

10.1126/sciadv.aau7314

Improving the metabolic fidelity of cancer models with a physiological cell culture medium
Cited by: 226
Author(s): Johan Vande Voorde, Tobias Ackermann, Nadja Pfetzer, David Sumpton, Gillian Mackay, Gabriela Kalna, Colin Nixon, Karen Blyth, Eyal Gottlieb, Saverio Tardito
Software Mentions: 1
Published: over 7 years ago

10.15252/embr.201948354

A distinct metabolic state arises during the emergence of 2‐cell‐like cells
Cited by: 34
Author(s): Diego Rodriguez-Terrones, Götz Hartleben, Xavier Gaume, André Eid, Manuel Guthmann, Ane Iturbide, Maria-Elena Torres-Padilla
Software Mentions: 1
Published: almost 7 years ago

10.7554/eLife.28046

Ubiquitination-dependent control of sexual differentiation in fission yeast
Cited by: 15
Author(s): Fabrizio Simonetti, Tito Candelli, Sébastien Léon, Domenico Libri, Mathieu Rougemaille
Software Mentions: 1
Published: about 9 years ago

10.15252/embr.201949583

Lipoic acid rejuvenates aged intestinal stem cells by preventing age‐associated endosome reduction
Cited by: 22
Author(s): Gang Du, Yicheng Qiao, Zhangpeng Zhuo, Jiaqi Zhou, Xiaorong Li, Zhiming Liu, Li Yang, Haiyang Chen
Software Mentions: 1
Published: about 6 years ago

10.1186/s12864-020-07339-7

Identification of genes associated with the biosynthesis of unsaturated fatty acid and oil accumulation in herbaceous peony ‘Hangshao’ (Paeonia lactiflora ‘Hangshao’) seeds based on transcriptome analysis
Cited by: 15
Author(s): Jiasong Meng, Yuhan Tang, Jing Sun, Daqiu Zhao, Keliang Zhang, Jun Tao
Software Mentions: 1
Published: over 5 years ago

10.15252/embr.201948789

Non‐apoptotic TRAIL function modulates NK cell activity during viral infection
Cited by: 11
Author(s): Ludmila Cardoso Alves, Michael Berger, Θεόδωρος Κουτσανδρέας, Nick Kirschke, Christoph Lauer, Roman Spörri, Aristotelis Chatziioannou, Nadia Corazza, Philippe Krebs
Software Mentions: 1
Published: almost 7 years ago

10.1126/sciadv.abb3713

GADL1 is a multifunctional decarboxylase with tissue-specific roles in β-alanine and carnosine production
Cited by: 23
Author(s): Elaheh Mahootchi, Selina Cannon Homaei, Rune Kleppe, Ingeborg Winge, Tor‐Arne Hegvik, Ricardo Pérez, Christian Totland, Floriana Mogavero, Anne Baumann, Jeffrey Glennon, Hrvoje Miletić, Petri Kursula, Jan Haavik
Software Mentions: 1
Published: about 6 years ago

10.1126/sciadv.aba0353

Metabolic multistability and hysteresis in a model aerobe-anaerobe microbiome community
Cited by: 23
Author(s): Tahmineh Khazaei, Rory L. Williams, Said R. Bogatyrev, John C. Doyle, Christopher S. Henry, Rustem F. Ismagilov
Software Mentions: 1
Published: about 6 years ago

10.15252/emmm.202012005

COCO/DAND5 inhibits developmental and pathological ocular angiogenesis
Cited by: 4
Author(s): Natalija Popović, Erika Hooker, A Barabino, Anthony Flamier, Frédéric Provost, Manuel Buscarlet, Gilbert Bernier, Bruno Larrivée
Software Mentions: 1
Published: over 5 years ago

10.15252/emmm.201707825

The diphenylpyrazole compound anle138b blocks Aβ channels and rescues disease phenotypes in a mouse model for amyloid pathology
Cited by: 58
Author(s): Ana Martinez Hernandez, Hendrik Urbanke, Alan L. Gillman, Joon Lee, Sergey Ryazanov, Hope Yao Agbemenyah, Eva Benito, Gaurav Jain, Lalit Kaurani, Gayane Grigorian, Andrei Leonov, Nasrollah Rezaei‐Ghaleh, Petra Wilken, Fernando Terán Arce, Jens A. Wagner, Martin Fuhrman, Mario Caruana, Angelique Camilleri, Neville Vassallo, Markus Zweckstetter, Roland Benz, Armin Giese, Anja Schneider, Martin Körte, Ratnesh Lal, Christian Griesinger, Gregor Eichele, André Fischer
Software Mentions: 1
Published: almost 9 years ago

10.15252/emmm.201606743

<scp>ROCK</scp> signaling promotes collagen remodeling to facilitate invasive pancreatic ductal adenocarcinoma tumor cell growth
Cited by: 100
Author(s): Nicola Rath, Jennifer P. Morton, Linda Julian, Lena Helbig, Shereen Kadir, Ewan J. McGhee, Kurt I. Anderson, Gabriela Kalna, Margaret Mullin, Andreia V. Pinho, Ilse Rooman, Michael S. Samuel, Michael F. Olson
Software Mentions: 1
Published: almost 10 years ago

10.15252/emmm.201708184

Loss of kallikrein‐related peptidase 7 exacerbates amyloid pathology in Alzheimer's disease model mice
Cited by: 34
Author(s): Kiwami Kidana, Takuya Tatebe, Kaori Ito, Norikazu Hara, Akiyoshi Kakita, Takashi Saito, Sho Takatori, Yasuyoshi Ouchi, Takeshi Ikeuchi, Mitsuhiro Makino, Takaomi C. Saido, Masahiro Akishita, Takeshi Iwatsubo, Yukiko Hori, Taisuke Tomita
Software Mentions: 1
Published: over 8 years ago

10.15252/emmm.202012088

BAM15‐mediated mitochondrial uncoupling protects against obesity and improves glycemic control
Cited by: 41
Author(s): Christopher L. Axelrod, W. T. King, Gangarao Davuluri, Robert C. Noland, J.Denny Hall, Michaela Hull, Wagner Silva Dantas, Elizabeth R. M. Zunica, Stephanie J. Alexopoulos, Kyle L. Hoehn, Ingeborg M. Langohr, Krisztián Stadler, Haylee Doyle, Éva Schmidt, Stephan Nieuwoudt, Kelly Fitzgerald, Kathryn Pergola, Hisashi Fujioka, Jacob T. Mey, Ciarán E. Fealy, Anny Mulya, Robbie A. Beyl, Charles L. Hoppel, John P. Kirwan
Software Mentions: 1
Published: over 6 years ago

10.15252/emmm.202013144

Upfront admixing antibodies and EGFR inhibitors preempts sequential treatments in lung cancer models
Cited by: 13
Author(s): Ilaria Marrocco, Donatella Romaniello, Ilan Vaknin, Diana Drago-García, Roni Oren, Mary Luz Uribe, Nishanth Belugali Nataraj, Soma Ghosh, Raya Eilam, Tomer-Meir Salame, Moshit Lindzen, Yosef Yarden
Software Mentions: 1
Published: over 5 years ago

10.3390/cells9040987

FTO Intronic SNP Strongly Influences Human Neck Adipocyte Browning Determined by Tissue and PPARγ Specific Regulation: A Transcriptome Analysis
Cited by: 23
Author(s): Beáta Tóth, Rini Arianti, Abhirup Shaw, Attila Vámos, Zoltán Veréb, Szilárd Póliska, Ferenc Győry, Zsolt Bacsó, László Fésüs, Endre Kristóf
Software Mentions: 1
Published: over 6 years ago

10.3390/cells10030522

Role of Heme-Oxygenase-1 in Biology of Cardiomyocytes Derived from Human Induced Pluripotent Stem Cells
Cited by: 4
Author(s): Mateusz Jeż, Alicja Martyniak, Kalina Andrysiak, Olga Mucha, Krzysztof Szade, Alan Kania, Łukasz Chrobok, Katarzyna Palus-Chramiec, Anna Magdalena Sanetra, M.H. Lewandowski, Ewelina Pośpiech, Jacek Stępniewski, Józef Dulak
Software Mentions: 1
Published: over 5 years ago

10.3390/cells10082011

The Role of Galanin during Bacterial Infection in Larval Zebrafish
Cited by: 1
Author(s): Natalia Nowik, Tomasz K. Prajsnar, A. Przyborowska, Krzysztof Rakus, Waldemar Sienkiewicz, Herman P. Spaink, Piotr Podlasz
Software Mentions: 1
Published: about 5 years ago

10.1126/sciadv.abg5283

Human tumor microenvironment chip evaluates the consequences of platelet extravasation and combinatorial antitumor-antiplatelet therapy in ovarian cancer
Cited by: 35
Author(s): Biswajit Saha, Tanmay Mathur, James J. Tronolone, Mithil Chokshi, Giriraj Lokhande, Amirali Selahi, Akhilesh K. Gaharwar, Vahid Afshar-Kharghan, Anil K. Sood, Gang Bao, Abhishek Jain
Software Mentions: 1
Published: about 5 years ago

10.1016/j.stem.2018.07.002

Phospho-regulation of ATOH1 Is Required for Plasticity of Secretory Progenitors and Tissue Regeneration
Cited by: 68
Author(s): Goran Tomić, Edward Morrissey, Sarah Kozar, Shani Ben‐Moshe, Alice Hoyle, Roberta Azzarelli, Richard Kemp, Chandra Sekhar Reddy Chilamakuri, Shalev Itzkovitz, Anna Philpott, Douglas J. Winton
Software Mentions: 1
Published: about 8 years ago

10.1016/j.stem.2018.05.001

Exit from Naive Pluripotency Induces a Transient X Chromosome Inactivation-like State in Males
Cited by: 31
Author(s): Elsa Joana Sousa, Hannah Stuart, Lawrence E. Bates, Mohammadmersad Ghorbani, Jennifer Nichols, Sabine Dietmann, José C.R. Silva
Software Mentions: 1
Published: over 8 years ago

10.7554/eLife.46703

A Myt1 family transcription factor defines neuronal fate by repressing non-neuronal genes
Cited by: 21
Author(s): Joo Lee, Christina Taylor, Kristopher M. Barnes, Ao Shen, Emerson V. Stewart, Allison Chen, Yang Xiang, Zhejing Bao, Kang Shen
Software Mentions: 1
Published: about 7 years ago

10.1186/s12864-020-07070-3

Metabolic and transcriptome responses of RNAi-mediated AMPKα knockdown in Tribolium castaneum
Cited by: 7
Author(s): Heng Jiang, Nan Zhang, Caihong Ji, Xiangkun Meng, Kun Qian, Zheng Yi, Jianjun Wang
Software Mentions: 1
Published: about 6 years ago

10.1126/sciadv.abc8145

NSG-Pro mouse model for uncovering resistance mechanisms and unique vulnerabilities in human luminal breast cancers
Cited by: 9
Author(s): Yunguang Sun, Ning Yang, Fransiscus E. Utama, Sameer S. Udhane, Junling Zhang, Amy R. Peck, Alicia F Yanac, Katherine E. Duffey, John F. Langenheim, Vindhya Udhane, Guanjun Xia, Jess F. Peterson, Julie M. Jorns, Marja T. Nevalainen, Romain Rouet, Peter Schofield, Daniel Christ, Christopher J. Ormandy, Anne Rosenberg, Inna Chervoneva, Shirng‐Wern Tsaih, Michael J. Flister, Serge Y. Fuchs, Kay Uwe Wagner, Hallgeir Rui
Software Mentions: 1
Published: about 5 years ago

10.1038/s41422-020-0338-1

Three-dimensional bioprinted glioblastoma microenvironments model cellular dependencies and immune interactions
Cited by: 135
Author(s): Min Tang, Qi Xie, Ryan C. Gimple, Zheng Zhong, Trevor Tam, Jing Tian, Reilly L. Kidwell, Qiulian Wu, Briana C. Prager, Zhixin Qiu, Aaron Yu, Zhe Zhu, Pinar Mesci, Hui Jing, Jacob Schimelman, Pengrui Wang, Derrick Lee, Michael H. Lorenzini, Deobrat Dixit, Linjie Zhao, Shruti Bhargava, Tyler E. Miller, Xueyi Wan, Jing Tang, Bingjie Sun, Benjamin F. Cravatt, Alysson R. Muotri, Shaochen Chen, Jeremy Rich
Software Mentions: 1
Published: over 6 years ago

10.1016/j.xcrm.2021.100206

Effects of Lactobacillus reuteri supplementation on the gut microbiota in extremely preterm infants in a randomized placebo-controlled trial
Cited by: 28
Author(s): Magalí Martí, Johanne E. Spreckels, Purnika Damindi Ranasinghe, Erik Wejryd, Giovanna Marchini, Eva Sverremark-Ekström, Maria C. Jenmalm, Thomas Abrahamsson
Software Mentions: 1
Published: over 5 years ago

10.1016/j.xcrm.2021.100239

Transcriptional firing represses bactericidal activity in cystic fibrosis airway neutrophils
Cited by: 21
Author(s): Camilla Margaroli, Diego Moncada Giraldo, Dalia Gulick, Brian Dobosh, Vincent D. Giacalone, Osric Forrest, Fangxu Sun, C.D. Gu, Amit Gaggar, Haydn Kissick, Ronghu Wu, Greg Gibson, Rabindra Tirouvanziam
Software Mentions: 1
Published: over 5 years ago

10.1038/sdata.2016.101

ROCK signalling induced gene expression changes in mouse pancreatic ductal adenocarcinoma cells
Cited by: 7
Author(s): Nicola Rath, Gabriela Kalna, William Clark, Michael F. Olson
Software Mentions: 1
Published: almost 10 years ago

10.1016/j.celrep.2017.06.091

Dual RNA Processing Roles of Pat1b via Cytoplasmic Lsm1-7 and Nuclear Lsm2-8 Complexes
Cited by: 32
Author(s): Caroline Vindry, Aline Marnef, Helen Broomhead, Laure Twyffels, Sevim Ozgur, Georg Stoecklin, Miriam Llorian, Christopher C.W. Smith, Juan Mata, Dominique Weil, Nancy Standart
Software Mentions: 1
Published: about 9 years ago

10.1016/j.celrep.2020.108460

Master Regulators and Cofactors of Human Neuronal Cell Fate Specification Identified by CRISPR Gene Activation Screens
Cited by: 32
Author(s): Joshua B. Black, Sean R. McCutcheon, Shataakshi Dube, Alejandro Barrera, Tyler S. Klann, Grayson A. Rice, Shaunak S. Adkar, Scott H. Soderling, Timothy E. Reddy, Charles A. Gersbach
Software Mentions: 1
Published: almost 6 years ago

10.1016/j.celrep.2020.108278

PPARα Inhibition Overcomes Tumor-Derived Exosomal Lipid-Induced Dendritic Cell Dysfunction
Cited by: 72
Author(s): Xiaozhe Yin, Wenfeng Zeng, Bowen Wu, Luoyang Wang, Zihao Wang, Hongjian Tian, Luyao Wang, Yunhan Jiang, Ricky P. Clay, Xiuli Wei, Qin Yan, Fayun Zhang, Chunyu Zhang, Lingtao Jin, Wei Liang
Software Mentions: 1
Published: almost 6 years ago

10.1016/j.celrep.2021.109233

Probing the signaling requirements for naive human pluripotency by high-throughput chemical screening
Cited by: 24
Author(s): Shafqat Ali Khan, Kyoung Mi Park, Laura A. Fischer, Chen Dong, Tenzin Lungjangwa, Marta Jiménez, Dominick Casalena, Brian Chew, Sabine Dietmann, Douglas S. Auld, Rudolf Jaenisch, Thorold W. Theunissen
Software Mentions: 1
Published: over 5 years ago

10.1186/s12864-016-3189-x

The founder-cell transcriptome in the Arabidopsis apetala1 cauliflower inflorescence meristem
Cited by: 13
Author(s): Anneke Frerichs, Rahere Thoma, Ali T. Abdallah, Peter Frommolt, Wolfgang Werr, John W. Chandler
Software Mentions: 1
Published: almost 10 years ago

10.1038/sdata.2017.172

Transcriptomic profiling of human breast and melanoma cells selected by migration through narrow constraints
Cited by: 6
Author(s): Dominika A. Rudzka, William Clark, Ann Hedley, Gabriela Kalna, Michael F. Olson
Software Mentions: 1
Published: almost 9 years ago

10.1002/advs.202002228

ICAM‐1 Activates Platelets and Promotes Endothelial Permeability through VE‐Cadherin after Insufficient Radiofrequency Ablation
Cited by: 21
Author(s): Jian Kong, Changyu Yao, Shuying Dong, Shilun Wu, Yangkai Xu, Ké Li, Liang Ji, Qiang Shen, Qi Zhang, Rui Zhan, Hongtu Cui, Changping Zhou, Hai-Gang Niu, Guoming Li, Wenbing Sun, Lemin Zheng
Software Mentions: 1
Published: over 5 years ago

10.1016/j.celrep.2015.11.026

Regulation of mRNA Levels by Decay-Promoting Introns that Recruit the Exosome Specificity Factor Mmi1
Cited by: 65
Author(s): Cornelia Kilchert, Sina Wittmann, Monica Passoni, Sneha Shah, Sander Granneman, Lidia Vasiljeva
Software Mentions: 1
Published: almost 11 years ago

10.1038/sdata.2018.123

Transcriptional profiling of stellate ganglia from normotensive and spontaneously hypertensive rat strains
Cited by: 9
Author(s): Harvey Davis, Emma N. Bardsley, David J. Paterson
Software Mentions: 1
Published: over 8 years ago

10.1038/sdata.2018.170

Transcriptomic analyses of murine ventricular cardiomyocytes
Cited by: 14
Author(s): Morgan Yoann Edwin Chevalier, Sarah H. Vermij, Kurt Wyler, Ludovic Gillet, Irene Keller, Hugues Abriel
Software Mentions: 1
Published: about 8 years ago

10.1016/j.celrep.2017.07.009

Single-Cell Landscape of Transcriptional Heterogeneity and Cell Fate Decisions during Mouse Early Gastrulation
Cited by: 261
Author(s): Hisham Mohammed, Irene Hernando-Herraez, Aurora Savino, Antonio Scialdone, Iain C. Macaulay, Carla Mulas, Tamir Chandra, Thierry Voet, Wendy Dean, Jennifer Nichols, John C. Marioni, Wolf Reik
Software Mentions: 1
Published: about 9 years ago

10.1186/s12864-018-4716-8

Expansion of the SOS regulon of Vibrio cholerae through extensive transcriptome analysis and experimental validation
Cited by: 30
Author(s): Evelyne Krin, Sebastián Aguilar Pierlé, Odile Sismeiro, Bernd Jagla, Marie‐Agnès Dillies, Hugo Varet, Oihane Irazoki, Susana Campoy, Zoé Rouy, Stéphane Cruveiller, Claudine Médigue, Jean‐Yves Coppée, Didier Mazel
Software Mentions: 1
Published: over 8 years ago

10.1016/j.celrep.2018.01.054

Chloroplast Signaling Gates Thermotolerance in Arabidopsis
Cited by: 71
Author(s): Patrick Dickinson, Manoj Kumar, Cláudia Martinho, Seong Jeon Yoo, Hui Y. Lan, George Artavanis, Varodom Charoensawan, Mark Aurel Schöttler, Ralph Bock, Katja E. Jaeger, Philip A. Wigge
Software Mentions: 1
Published: over 8 years ago

10.7554/eLife.65234

A non-genetic, cell cycle-dependent mechanism of platinum resistance in lung adenocarcinoma
Cited by: 13
Author(s): Álvaro González-Rajal, Kamila A. Marzec, Rachael A. McCloy, Max Nobis, Venessa T. Chin, Jordan F. Hastings, Kaitao Lai, Marina Kennerson, William E. Hughes, Vijesh Vaghjiani, Paul Timpson, Jason E. Cain, D. Neil Watkins, David R. Croucher, Andrew Burgess
Software Mentions: 1
Published: over 5 years ago

10.1111/cpr.12836

ITGBL1 promotes cell migration and invasion through stimulating the TGF‐β signalling pathway in hepatocellular carcinoma
Cited by: 26
Author(s): Wei Huang, Demin Yu, Mingjie Wang, Yue Han, Junyu Lin, Dong Wei, Jialin Cai, Bin Li, Peizhan Chen, Xinxin Zhang
Software Mentions: 1
Published: over 6 years ago

10.1111/cpr.12872

Dibenzazepine promotes cochlear supporting cell proliferation and hair cell regeneration in neonatal mice
Cited by: 4
Author(s): Jing Wu, Xinran Dong, Wen Li, Liping Zhao, Li Zhou, Shan Sun, Huawei Li
Software Mentions: 1
Published: about 6 years ago

Projects: bioconductor: DESeq2

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Science Score: 100/100

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Papers Mentioning DESeq2 9,583