bioconductor: DESeq2 | Projects | Ecosyste.ms: Papers

10.3389/fcell.2021.673765

Establishment of Repertoire of Placentome-Associated MicroRNAs and Their Appearance in Blood Plasma Could Identify Early Establishment of Pregnancy in Buffalo (Bubalus bubalis)
Cited by: 2
Author(s): Parul Sarwalia, Mustafa Raza, Apoorva Soni, Pratiksha Dubey, Rajeev Chandel, Rakesh Kumar, A. Kumaresan, Suneel Kumar Onteru, Ankit Pal, Kalpana Singh, Mir Asif Iquebal, Sarika Jaiswal, Dinesh Kumar, Tirtha Kumar Datta
Software Mentions: 1
Published: about 5 years ago

10.7554/eLife.56187

Sequential activation of transcriptional repressors promotes progenitor commitment by silencing stem cell identity genes
Cited by: 9
Author(s): Noemí Rives-Quinto, Hideyuki Komori, Cyrina M. Ostgaard, Derek H. Janssens, Shu Kondo, Qigen Dai, Adrian W. Moore, Cheng-Yu Lee
Software Mentions: 1
Published: almost 6 years ago

10.1038/sdata.2017.172

Transcriptomic profiling of human breast and melanoma cells selected by migration through narrow constraints
Cited by: 6
Author(s): Dominika A. Rudzka, William Clark, Ann Hedley, Gabriela Kalna, Michael F. Olson
Software Mentions: 1
Published: almost 9 years ago

10.3390/cancers12092418

Tumor Infiltrating Lymphocytes Signature as a New Pan-Cancer Predictive Biomarker of Anti PD-1/PD-L1 Efficacy
Cited by: 16
Author(s): Elise Ballot, Sylvain Ladoire, Bertrand Routy, Caroline Truntzer, François Ghiringhelli
Software Mentions: 1
Published: about 6 years ago

10.3390/vaccines9030261

Protective Effect of Nasal Colonisation with ∆cps/piaA and ∆cps/proABCStreptococcus pneumoniae Strains against Recolonisation and Invasive Infection
Cited by: 2
Author(s): Elisa Ramos‐Sevillano, Giuseppe Ercoli, José Afonso Guerra-Assunção, Philip L. Felgner, Rafael Ramiro de Assis, Rie Nakajima, David Green, Kevin Kweku Adjei Tetteh, Robert S. Heyderman, Stephen B. Gordon, Daniela Mulari Ferreria, Jeremy S. Brown
Software Mentions: 1
Published: over 5 years ago

10.1038/sdata.2018.123

Transcriptional profiling of stellate ganglia from normotensive and spontaneously hypertensive rat strains
Cited by: 9
Author(s): Harvey Davis, Emma N. Bardsley, David J. Paterson
Software Mentions: 1
Published: about 8 years ago

10.1038/sdata.2018.170

Transcriptomic analyses of murine ventricular cardiomyocytes
Cited by: 14
Author(s): Morgan Yoann Edwin Chevalier, Sarah H. Vermij, Kurt Wyler, Ludovic Gillet, Irene Keller, Hugues Abriel
Software Mentions: 1
Published: about 8 years ago

10.3389/fcell.2021.640856

Phenotypic Robustness of Epidermal Stem Cell Number in C. elegans Is Modulated by the Activity of the Conserved N-acetyltransferase nath-10/NAT10
Cited by: 7
Author(s): Mark Hintze, Dimitris Katsanos, Vahid Shahrezaei, Michalis Barkoulas
Software Mentions: 1
Published: over 5 years ago

10.7554/eLife.47549

A genetic selection reveals functional metastable structures embedded in a toxin-encoding mRNA
Cited by: 12
Author(s): Sara Masachis, Nicolas J. Tourasse, Claire Lays, Marion Faucher, Sandrine Chabas, Isabelle Iost, Fabien Darfeuille
Software Mentions: 1
Published: about 7 years ago

10.7717/peerj.6541

Comparative transcriptomics of sympatric species of coral reef fishes (genus: Haemulon)
Cited by: 4
Author(s): Moisés A. Bernal, Groves Dixon, Mikhail V. Matz, Luiz A. Rocha
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0230266

Comparison of transcriptomes from two chemosensory organs in four decapod crustaceans reveals hundreds of candidate chemoreceptor proteins
Cited by: 35
Author(s): Mihika T. Kozma, Hanh Ngo-Vu, YW Wong, Neal S. Shukla, Shrikant Pawar, Adriano Senatore, Manfred Schmidt, Charles D. Derby
Software Mentions: 1
Published: over 6 years ago

10.1128/AEM.02151-19

DNA Stable-Isotope Probing Delineates Carbon Flows from Rice Residues into Soil Microbial Communities Depending on Fertilization
Cited by: 29
Author(s): Yali Kong, Yakov Kuzyakov, Yang Ruan, Junwei Zhang, Tingting Wang, Min Wang, Shiwei Guo, Qirong Shen, Ning Ling
Software Mentions: 1
Published: over 6 years ago

10.3389/fcell.2020.604026

Rbm24a Is Necessary for Hair Cell Development Through Regulating mRNA Stability in Zebrafish
Cited by: 10
Author(s): Yan Zhang, Yanfei Wang, Xuebo Yao, Changquan Wang, Fangyi Chen, Dong Liu, Ming Shao, Zhigang Xu
Software Mentions: 1
Published: almost 6 years ago

10.3390/nu12061691

Effect of Exclusive Enteral Nutrition and Corticosteroid Induction Therapy on the Gut Microbiota of Pediatric Patients with Inflammatory Bowel Disease
Cited by: 15
Author(s): Lara Hart, Yasamin Farbod, Jake C. Szamosi, Masato Yamamoto, Philip Britz‐McKibbin, Camilla Halgren, Mary Zachos, Nikhil Pai
Software Mentions: 1
Published: over 6 years ago

10.1099/acmi.0.000121

Transcriptome profiling of Variovorax paradoxus EPS under different growth conditions reveals regulatory and structural novelty in biofilm formation
Cited by: 2
Author(s): Richard J. Fredendall, Jenny L. Stone, Michael J. Pehl, Paul M. Orwin
Software Mentions: 1
Published: over 6 years ago

10.18632/aging.103539

The circular RNA circEIF3M promotes breast cancer progression by promoting cyclin D1 expression
Cited by: 12
Author(s): Xiujuan Li, Zhao-Jun Ren, Yufeng Yao, Jun Bao, Qiao Ye
Software Mentions: 1
Published: about 6 years ago

10.1038/s41597-019-0101-y

Transcriptome profiles of three Muscat table grape cultivars to dissect the mechanism of terpene biosynthesis
Cited by: 5
Author(s): Lina Sun, Baoqing Zhu, Xuanyin Zhang, Guojun Zhang, Ailing Yan, Huiling Wang, Xiaoyue Wang, Huini Xu
Software Mentions: 1
Published: over 7 years ago

10.1080/21623945.2020.1859789

Mouse Embryonic Fibroblast Adipogenic Potential: A Comprehensive Transcriptome Analysis
Cited by: 6
Author(s): Mohamed Al-Sayegh, Hamad Ali, Mohammad H. Jamal, Mei ElGindi, Tina Chanyong, Khulood Al-Awadi, Mohamed Abu‐Farha
Software Mentions: 1
Published: over 5 years ago

10.3389/fcell.2021.702462

Depletion of Demethylase KDM6 Enhances Early Neuroectoderm Commitment of Human PSCs
Cited by: 5
Author(s): Yajing Meng, Tianzhe Zhang, Ran Zheng, Song Ding, Jie Yang, Ran Liu, Yingan Jiang, Wei Jiang
Software Mentions: 1
Published: about 5 years ago

10.3389/fcell.2020.580367

YTHDF2 Regulates Maternal Transcriptome Degradation and Embryo Development in Goat
Cited by: 12
Author(s): Mingtian Deng, BaoBao Chen, Zifei Liu, Yu Cai, Yongjie Wan, Guomin Zhang, Yixuan Fan, Yanli Zhang
Software Mentions: 1
Published: almost 6 years ago

10.3389/fcell.2021.644346

Bhlhe40/Sirt1 Axis-Regulated Mitophagy Is Implicated in All-Trans Retinoic Acid-Induced Spina Bifida Aperta
Cited by: 6
Author(s): Lu Zhao, Dan Liú, Wei Ma, Hui Gu, Xiaowei Wei, Wenting Luo, Zhengwei Yuan
Software Mentions: 1
Published: over 5 years ago

10.1038/s41597-019-0210-7

Transcriptomic profiling of cotton Gossypium hirsutum challenged with low-temperature gradients stress
Cited by: 13
Author(s): Zhibo Li, Zeng XiaoYan, Jianwei Xu, Ruihai Zhao, Wei Yinong
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0199083

Role of the tomato TAGL1 gene in regulating fruit metabolites elucidated using RNA sequence and metabolomics analyses
Cited by: 13
Author(s): Xiaodan Zhao, Xinyu Yuan, Sha Chen, Lanhuan Meng, Daqi Fu
Software Mentions: 1
Published: over 8 years ago

10.3389/fcell.2021.724310

Transcriptome Analysis Reveals an Inhibitory Effect of Dihydrotestosterone-Treated 2D- and 3D-Cultured Dermal Papilla Cells on Hair Follicle Growth
Cited by: 6
Author(s): Yufan Zhang, Junfei Huang, Danlan Fu, Zhen Liu, Hailin Wang, Jin Wang, Qian Qu, Kaitao Li, Zhexiang Fan, Yong Miao
Software Mentions: 1
Published: about 5 years ago

10.1098/rsob.160012

Acute stress is detrimental to heart regeneration in zebrafish
Cited by: 46
Author(s): Pauline Sallin, Anna Jaźwińska
Software Mentions: 1
Published: over 10 years ago

10.1186/s13567-019-0679-2

Xanthohumol inhibits PRRSV proliferation and alleviates oxidative stress induced by PRRSV via the Nrf2–HMOX1 axis
Cited by: 29
Author(s): Xuewei Liu, Zhongbao Song, Juan Bai, Hans Nauwynck, Yongxiang Zhao, Ping Jiang
Software Mentions: 1
Published: about 7 years ago

10.3389/fcell.2020.585879

RAD-Deficient Human Cardiomyocytes Develop Hypertrophic Cardiomyopathy Phenotypes Due to Calcium Dysregulation
Cited by: 7
Author(s): Yanan Li, Yun Chang, Xiaolei Li, Xiaowei Li, Jian Gao, Yuanyuan Zhou, Fujian Wu, Rui Bai, Tao Dong, Shuhong Ma, Siyao Zhang, Wenjing Lü, Xiaoqiu Tan, Yongming Wang, Feng Lan
Software Mentions: 1
Published: almost 6 years ago

10.3389/fcell.2021.709280

B Cell Subset Analysis and Gene Expression Characterization in Mid-Luteal Endometrium
Cited by: 5
Author(s): Mengni Shen, Tim Child, Monica Mittal, Geet Sarodey, Rehan Salim, Ingrid Granne, Jennifer H. Southcombe
Software Mentions: 1
Published: about 5 years ago

10.1098/rsob.160293

Peripheral self-reactivity regulates antigen-specific CD8 T-cell responses and cell division under physiological conditions
Cited by: 6
Author(s): Lee Kim Swee, Zhen Tan, Anna Smerdel-Ramoya, Norimasa Yoshida, Harshil Patel, Gijsbert M. Grotenbreg, Eva‐Maria Frickel, Hidde L. Ploegh
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pgen.1005295

Non-reciprocal Interspecies Hybridization Barriers in the Capsella Genus Are Established in the Endosperm
Cited by: 83
Author(s): Carolin A. Rebernig, Clément Lafon‐Placette, Marcelinus Rocky Hatorangan, Tanja Slotte, Claudia Köhler
Software Mentions: 1
Published: over 11 years ago

10.1093/aobpla/plab043

Transcriptome profiling of two rice genotypes under mild field drought stress during grain-filling stage
Cited by: 17
Author(s): Yuya Liang, Rodante E. Tabien, Lee Tarpley, Abdul Razack Mohammed, Endang M. Septiningsih
Software Mentions: 1
Published: about 5 years ago

10.1093/aobpla/plaa041

Transcriptome analysis in osmo-primed tomato seeds with enhanced longevity by heat shock treatment
Cited by: 2
Author(s): Thiago Barbosa Batista, Geysson Javier Fernández, Edvaldo Aparecido Amaral da Silva, Júlio Maia, Edvaldo Aparecido Amaral da Silva
Software Mentions: 1
Published: about 6 years ago

10.1186/s13567-021-00912-2

MicroRNA expression profile in bovine mammary gland parenchyma infected by coagulase-positive or coagulase-negative staphylococci
Cited by: 9
Author(s): Emilia Bagnicka, Ewelina Kawecka-Grochocka, Klaudia Pawlina-Tyszko, Magdalena Zalewska, Aleksandra Kapusta, Ewa M. Kościuczuk, Sylwester Marczak, Tomasz Ząbek
Software Mentions: 1
Published: over 5 years ago

10.1038/srep11126

Co-existence of intact stemness and priming of neural differentiation programs in mES cells lacking Trim71
Cited by: 38
Author(s): Sibylle Mitschka, Thomas Ulas, Tobias Goller, Karin Schneider, Angela Egert, Jérôme Mertens, Oliver Brüstle, Hubert Schorle, Marc Beyer, Kathrin Klee, Jia Xue, Patrick Günther, Kevin Baßler, Joachim L. Schultze, Waldemar Kolanus
Software Mentions: 1
Published: over 11 years ago

10.3390/cancers13164117

Algorithmically Deduced FREM2 Molecular Pathway Is a Potent Grade and Survival Biomarker of Human Gliomas
Cited by: 9
Author(s): Marianna Zolotovskaia, Victor Tkachev, Maxim Sorokin, Andrew Garazha, Ella Kim, Sven R. Kantelhardt, Sven-Ernö Bikar, Alja Zottel, Neja Šamec, Denis Kuzmin, Bettina Sprang, Alexey Moisseev, Alf Giese, Victor Efimov, Ivana Jovčevska, Anton Buzdin
Software Mentions: 1
Published: about 5 years ago

10.3389/fcell.2021.691050

Hormone-Responsive BMP Signaling Expands Myoepithelial Cell Lineages and Prevents Alveolar Precocity in Mammary Gland
Cited by: 4
Author(s): Chunlei Shao, Pengbo Lou, Ruiqi Liu, Xueyun Bi, Guilin Li, Yang Xu, Xiaole Sheng, Jiuzhi Xu, Cong Lv, Zhengquan Yu
Software Mentions: 1
Published: about 5 years ago

10.1038/srep13443

CADBURE: A generic tool to evaluate the performance of spliced aligners on RNA-Seq data
Cited by: 7
Author(s): Praveen Kumar, Thanh Hoang, Michael L. Robinson, Panagiotis A. Tsonis, Chun Liang
Software Mentions: 1
Published: about 11 years ago

10.1186/s12985-017-0871-9

In silico analysis of the grapefruit sRNAome, transcriptome and gene regulation in response to CTV-CDVd co-infection
Cited by: 8
Author(s): Marike Visser, Glynnis Cook, Johan T. Burger, Hans J. Maree
Software Mentions: 1
Published: almost 9 years ago

10.1111/pbi.13566

Repressed <i>OsMESL</i> expression triggers reactive oxygen species‐mediated broad‐spectrum disease resistance in rice
Cited by: 16
Author(s): Bin Hu, Yong Zhou, Zaihui Zhou, Bo Sun, Fei Zhou, Changxi Yin, Weihua Ma
Software Mentions: 1
Published: over 5 years ago

10.1038/srep14976

A high-throughput RNA-seq approach to profile transcriptional responses
Cited by: 23
Author(s): Gregory A Moyerbrailean, Gordon O Davis, Chris T. Harvey, Donovan Watza, Xiaoquan Wen, Roger Piqué-Regi, Francesca Luca
Software Mentions: 1
Published: almost 11 years ago

10.3389/fcell.2021.641891

Integrated Characterization of lncRNA-Immune Interactions in Prostate Cancer
Cited by: 13
Author(s): Wei Hu, Yanru Wang, Zhixiao Fang, Wei He, Shengli Li
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms21083009

Human NANOS1 Represses Apoptosis by Downregulating Pro-Apoptotic Genes in the Male Germ Cell Line
Cited by: 5
Author(s): Damian Mikolaj Janecki, Erkut Ilaslan, Maciej Jerzy Smialek, Marcin Sajek, Maciej Kotecki, Barbara Ginter-Matuszewska, Patryk Kraiński, Kamila Kusz-Zamelczyk
Software Mentions: 1
Published: over 6 years ago

10.1038/srep20316

Dictyocaulus viviparus genome, variome and transcriptome elucidate lungworm biology and support future intervention
Cited by: 21
Author(s): Samantha N. McNulty, Christina Strübe, Bruce A. Rosa, John Martin, Rahul Tyagi, Young Jun Choi, Qi Wang, Kymberlie H. Pepin, Xu Zhang, Philip Ozersky, Richard K. Wilson, Paul W. Sternberg, Robin B. Gasser, Makedonka Mitreva
Software Mentions: 1
Published: over 10 years ago

10.1038/srep21962

Improved lipids, diastolic pressure and kidney function are potential contributors to familial longevity: a study on 60 Chinese centenarian families
Cited by: 13
Author(s): Yonghan He, Shao-Yan Pu, Fu-Hui Xiao, Xiao‐Qiong Chen, Dongjing Yan, Yaowen Liu, Rong Lin, Xiaoping Liao, Qin Yu, Libin Yang, Xiaoxi Yang, Ming-Xia Ge, Ying Liu, Jianjun Jiang, Wei Cai, Qing‐Peng Kong
Software Mentions: 1
Published: over 10 years ago

10.1038/srep22416

RNA sequencing reveals region-specific molecular mechanisms associated with epileptogenesis in a model of classical hippocampal sclerosis
Cited by: 18
Author(s): André Schwambach Vieira, A. H. de Matos, Amanda Morato do Canto, Cristiane S. Rocha, Benilton Carvalho, Vinícius D'Ávila Bitencourt Pascoal, Braxton A. Norwood, Sebastian Bauer, Felix Rosenow, Rovílson Gilioli, Fernando Cendes, Íscia Lopes‐Cendes
Software Mentions: 1
Published: over 10 years ago

10.1038/srep22611

Dispersal of Bacillus subtilis and its effect on strawberry phyllosphere microbiota under open field and protection conditions
Cited by: 53
Author(s): Feng Wei, Xiaoping Hu, Xiangming Xu
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pntd.0007052

Genomic instability at the locus of sterol C24-methyltransferase promotes amphotericin B resistance in Leishmania parasites
Cited by: 38
Author(s): Andrew W. Pountain, Stefan Weidt, Clément Regnault, Paul A. Bates, Anne M. Donachie, Nicholas J. Dickens, Michael P. Barrett
Software Mentions: 1
Published: over 7 years ago

10.7554/eLife.35037

A genetic program mediates cold-warming response and promotes stress-induced phenoptosis in C. elegans
Cited by: 37
Author(s): Wei Jiang, Yuehua Wei, Yong Long, Arthur Owen, Bingying Wang, Xuebing Wu, Shuo Luo, Yongjun Dang, K. Dengke
Software Mentions: 1
Published: over 8 years ago

10.1186/s12864-021-07715-x

De novo transcriptome sequencing and anthocyanin metabolite analysis reveals leaf color of Acer pseudosieboldianum in autumn
Cited by: 16
Author(s): Yufu Gao, Dong-Hui Zhao, Jiaqi Zhang, Jia-Shuo Chen, Jialin Li, Zhuo Weng, Liping Rong
Software Mentions: 1
Published: over 5 years ago

10.3389/fcell.2021.693742

Immature Follicular Origins and Disrupted Oocyte Growth Pathways Contribute to Decreased Gamete Quality During Reproductive Juvenescence in Mice
Cited by: 4
Author(s): Atsuko Kusuhara, Elnur Babayev, Luhan T. Zhou, Vijay Pratap Singh, Jennifer L. Gerton, Francesca E. Duncan
Software Mentions: 1
Published: over 5 years ago

10.3389/fcell.2021.604232

SIN3A Regulates Porcine Early Embryonic Development by Modulating CCNB1 Expression
Cited by: 2
Author(s): Lei Luo, Yanna Dang, Yan Shi, Panpan Zhao, Yunhai Zhang, Kun Zhang
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0177932

Zebrafish exposure to environmentally relevant concentration of depleted uranium impairs progeny development at the molecular and histological levels
Cited by: 23
Author(s): Olivier Armant, Kewin Gombeau, Sophia Murat El Houdigui, Magali Floriani, Virginie Camilleri, Isabelle Cavalié, Christelle Adam-Guillermin
Software Mentions: 1
Published: over 9 years ago

10.18632/aging.103205

Chestnut polysaccharides benefit spermatogenesis through improvement in the expression of important genes
Cited by: 10
Author(s): Shuai Yu, Yong Zhao, Fa‐Li Zhang, Ya-Qi Li, Wei Shen, Zhongyi Sun
Software Mentions: 1
Published: about 6 years ago

10.3389/fcell.2021.653724

SPTBN1 Prevents Primary Osteoporosis by Modulating Osteoblasts Proliferation and Differentiation and Blood Vessels Formation in Bone
Cited by: 8
Author(s): Xuejuan Xu, Jiayi Yang, Yanshi Ye, Guoqiang Chen, Yinhua Zhang, Hangtian Wu, Yu-Qian Song, Meichen Feng, Xiaoting Feng, Xingying Chen, Xiao Wang, Xu Lin, Xiaochun Bai, Jie Shen
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0125912

MicroRNA Expression Profile in Bovine Granulosa Cells of Preovulatory Dominant and Subordinate Follicles during the Late Follicular Phase of the Estrous Cycle
Cited by: 81
Author(s): Samuel Gebremedhn, Dessie Salilew‐Wondim, Ijaz Ahmad, Sudeep Sahadevan, Munir Hossain, M. Hoelker, F. Rings, Christiane Neuhoff, Ernst Tholen, Christian Looft, K. Schellander, Dawit Tesfaye
Software Mentions: 1
Published: over 11 years ago

10.3389/fcell.2020.601521

THBS1/CD47 Modulates the Interaction of γ-Catenin With E-Cadherin and Participates in Epithelial–Mesenchymal Transformation in Lipid Nephrotoxicity
Cited by: 6
Author(s): Li Gao, Tingting Yang, Junsheng Zhang, Hongxia Liu, Dong-Cheng Cai, Lintao Wang, Jing Wang, Xinwei Li, Kun Gao, Su-Ya Zhang, Yujia Cao, Xiaoxia Ji, Miaomiao Yang, Biao Han, Sheng Wang, Lu He, Xin Nie, Danmei Liu, Gang Ma, Chaoyong He
Software Mentions: 1
Published: over 5 years ago

10.1098/rsob.200246

Temperature modulates immune gene expression in mosquitoes during arbovirus infection
Cited by: 18
Author(s): B. M. C. Randika Wimalasiri-Yapa, Roberto A. Barrero, Liesel Stassen, Louise M. Hafner, Elizabeth A. McGraw, Alyssa T. Pyke, Cassie C. Jansen, Andreas Suhrbier, Laith Yakob, Wenbiao Hu, Gregor J. Devine, Francesca D. Frentiu
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pgen.1007571

Naturally-occurring canine invasive urothelial carcinoma harbors luminal and basal transcriptional subtypes found in human muscle invasive bladder cancer
Cited by: 28
Author(s): Deepika Dhawan, Noah M. Hahn, José A. Ramos‐Vara, Deborah W. Knapp
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0186469

Novel insights into the pathways regulating the canine hair cycle and their deregulation in alopecia X
Cited by: 19
Author(s): Magdalena A. T. Brunner, Vidhya Jagannathan, Dominik P. Waluk, Petra Roosje, Моника Линек, Lucia Panakova, Tosso Leeb, Dominique J Wiener, Monika Maria Welle
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0252221

Midgut transcriptome assessment of the cockroach-hunting wasp Ampulex compressa (Apoidea: Ampulicidae)
Cited by: 1
Author(s): Jovana M. Jasso‐Martínez, Alexander Donath, Dieter Schulten, Alejandro Zaldívar‐Riverón, Manuela Sann
Software Mentions: 1
Published: about 5 years ago

10.1186/s12864-019-6250-8

Integrated transcriptome and miRNA analysis uncovers molecular regulators of aerial stem-to-rhizome transition in the medical herb Gynostemma pentaphyllum
Cited by: 8
Author(s): Qi Yang, Shibiao Liu, Xiaoning Han, Jingyi Ma, Wenhong Deng, Xinli Wang, Hongwei Guo, Xinli Xia
Software Mentions: 1
Published: almost 7 years ago

10.18632/aging.202640

Suppression of p16 alleviates the senescence-associated secretory phenotype
Cited by: 28
Author(s): Raquel Buj, Kelly E. Leon, Marlyn A Anguelov, Katherine M. Aird
Software Mentions: 1
Published: over 5 years ago

10.1038/srep33660

Characterization of the mechanism of prolonged adaptation to osmotic stress of Jeotgalibacillus malaysiensis via genome and transcriptome sequencing analyses
Cited by: 36
Author(s): Amira Suriaty Yaakop, Kok‐Gan Chan, Robson Ee, Yan Lue Lim, Siew Kim Lee, Fazilah Abd Manan, Kian Mau Goh
Software Mentions: 1
Published: almost 10 years ago

10.7554/eLife.65484

Cytosolic aggregation of mitochondrial proteins disrupts cellular homeostasis by stimulating the aggregation of other proteins
Cited by: 37
Author(s): Urszula Nowicka, Piotr Chrościcki, Karen Stroobants, Maria Sladowska, Michał Turek, Barbara Uszczyńska-Ratajczak, Rishika Kundra, Tomasz Góral, Michele Perni, Christopher M. Dobson, Agnieszka Chacińska
Software Mentions: 1
Published: about 5 years ago

10.1038/srep35323

Effects of aged garlic extract and FruArg on gene expression and signaling pathways in lipopolysaccharide-activated microglial cells
Cited by: 15
Author(s): Hailong Song, Yuan Lu, Zhe Qu, Valeri V. Mossine, Matthew B. Martin, Jie Hou, Jiankun Cui, Brenda A. Peculis, Thomas P. Mawhinney, Jianlin Cheng, C. Michael Greenlief, Kevin L. Fritsche, Francis J. Schmidt, Ronald B. Walter, Dennis B. Lubahn, Grace Y. Sun
Software Mentions: 1
Published: almost 10 years ago

10.3389/fcell.2020.613540

CircRNAs Dysregulated in Juvenile Myelomonocytic Leukemia: CircMCTP1 Stands Out
Cited by: 10
Author(s): Anna Dal Molin, Mattias Hofmans, Enrico Gaffo, Alessia Buratin, Hélène Cavé, Christian Flotho, Valérie de Haas, Charlotte M. Niemeyer, Jan Starý, Pieter Van Vlierberghe, Jan Philippé, Barbara De Moerloose, G. te Kronnie, Silvia Bresolin, Tim Lammens, Stefania Bortoluzzi
Software Mentions: 1
Published: over 5 years ago

10.1038/srep35852

Extensive transcriptome analysis correlates the plasticity of Entamoeba histolytica pathogenesis to rapid phenotype changes depending on the environment
Cited by: 38
Author(s): Christian Weber, Mikael Koutero, Marie‐Agnès Dillies, Hugo Varet, César López‐Camarillo, Jean Yves Coppée, Chung-Chau Hon, Nancy Guillén
Software Mentions: 1
Published: almost 10 years ago

10.1038/srep35830

Establishment of a translational endothelial cell model using directed differentiation of induced pluripotent stem cells from Cynomolgus monkey
Cited by: 8
Author(s): Eva C. Thoma, Tobias Heckel, David M. Keller, Nicolas Giroud, Brian C. Leonard, Klaus Christensen, Adrian Roth, Cristina Bertinetti-Lapatki, Martin Gräf, Christoph Patsch
Software Mentions: 1
Published: almost 10 years ago

10.1038/srep36007

Analyses of RNA-Seq and sRNA-Seq data reveal a complex network of anti-viral defense in TCV-infected Arabidopsis thaliana
Cited by: 16
Author(s): Chao Wu, Xinyue Li, Song Guo, Sek‐Man Wong
Software Mentions: 1
Published: almost 10 years ago

10.1523/ENEURO.0232-21.2021

Heterogeneous Expression of Nuclear Encoded Mitochondrial Genes Distinguishes Inhibitory and Excitatory Neurons
Cited by: 10
Author(s): Meghan E. Wynne, Alicia R. Lane, Kaela S. Singleton, Stephanie A. Zlatic, Avanti Gokhale, Erica Werner, Duc M. Duong, Jennifer Q. Kwong, Amanda Crocker, Víctor Faúndez
Software Mentions: 1
Published: about 5 years ago

10.7554/eLife.47929

Cardiac neural crest contributes to cardiomyocytes in amniotes and heart regeneration in zebrafish
Cited by: 44
Author(s): Weiyi Tang, Megan L. Martik, Yuwei Li, Marianne E. Bronner
Software Mentions: 1
Published: about 7 years ago

10.1038/srep37110

The caste- and sex-specific DNA methylome of the termite Zootermopsis nevadensis
Cited by: 104
Author(s): Karl M. Glastad, Kaustubh Gokhale, Jürgen Liebig, Michael A. D. Goodisman
Software Mentions: 1
Published: almost 10 years ago

10.7554/eLife.63300

PIE-1 SUMOylation promotes germline fates and piRNA-dependent silencing in C. elegans
Cited by: 8
Author(s): Hee-Sun Kim, Yue-He Ding, Shan Lu, Mei-Qing Zuo, Wendy D Tan, Darryl Conte, Meng‐Qiu Dong, Craig C. Mello
Software Mentions: 1
Published: over 5 years ago

10.7554/eLife.33498

LRRTM1 underlies synaptic convergence in visual thalamus
Cited by: 29
Author(s): Aboozar Monavarfeshani, Gail Stanton, Jonathan Van Name, Kaiwen Su, William A. Mills, Kenya Swilling, Alicia Kerr, Natalie A Huebschman, Jianmin Su, Michael A. Fox
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0131650

Gender and Obesity Specific MicroRNA Expression in Adipose Tissue from Lean and Obese Pigs
Cited by: 46
Author(s): Caroline M. Junker Mentzel, Christian Anthon, Mette Juul Jacobsen, Peter Karlskov-Mortensen, Camilla S. Bruun, Claus B. Jørgensen, Jan Gorodkin, Susanna Cirera, Merete Fredholm
Software Mentions: 1
Published: about 11 years ago

10.3389/fcell.2020.618796

Modeling Uremic Vasculopathy With Induced Pluripotent Stem Cell-Derived Endothelial Cells as a Drug Screening System
Cited by: 3
Author(s): Hye Ryoun Jang, Hyung Joon Cho, Yang Zhou, Ning‐Yi Shao, Kyung-Ho Lee, Hoai Huong Thi Le, Junseok Jeon, Jung Eun Lee, Wooseong Huh, Sang-Ging Ong, Won Hee Lee, Yoon-Goo Kim
Software Mentions: 1
Published: over 5 years ago

10.3389/fcell.2020.565355

LncRNA AC010789.1 Promotes Colorectal Cancer Progression by Targeting MicroRNA-432-3p/ZEB1 Axis and the Wnt/β-Catenin Signaling Pathway
Cited by: 15
Author(s): Weili Duan, Xue Kong, Juan Li, Peilong Li, Yinghui Zhao, Tong Liu, Helen Binang, Yunshan Wang, Du Li, Chuanxin Wang
Software Mentions: 1
Published: almost 6 years ago

10.1038/srep37770

Genome-wide transcriptome analysis revealed organelle specific responses to temperature variations in algae
Cited by: 34
Author(s): HyeonSeok Shin, Seong-Joo Hong, Chan Yul Yoo, Mi-Ae Han, Hookeun Lee, Hyung‐Kyoon Choi, Suhyung Cho, Choul-Gyun Lee, Byung-Kwan Cho
Software Mentions: 1
Published: almost 10 years ago

10.18632/aging.202971

LncRNAs induce oxidative stress and spermatogenesis by regulating endoplasmic reticulum genes and pathways
Cited by: 13
Author(s): Tie-Cheng Sun, Yi Zhang, Kun Yu, Li Yao, Haiyang Yu, Shan-Jie Zhou, Yapeng Wang, Shoulong Deng, Li Tian
Software Mentions: 1
Published: over 5 years ago

10.1098/rsob.200182

Genetic regulation and heritability of miRNA and mRNA expression link to phosphorus utilization and gut microbiome
Cited by: 4
Author(s): Siriluck Ponsuksili, Michael Oster, Henry Reyer, Frieder Hadlich, Nares Trakooljul, M. Rodehutscord, Amélia Camarinha‐Silva, Jörn Bennewitz, Klaus Wimmers
Software Mentions: 1
Published: over 5 years ago

10.1038/srep40325

KANK1 inhibits cell growth by inducing apoptosis through regulating CXXC5 in human malignant peripheral nerve sheath tumors
Cited by: 22
Author(s): Zelin Cui, Yingjia Shen, Kenny H Chen, Suresh K. Mittal, Jer-Yen Yang, Guangjun Zhang
Software Mentions: 1
Published: over 9 years ago

10.3389/fcell.2020.00173

Inhibition of Gamma-Secretase Promotes Axon Regeneration After a Complete Spinal Cord Injury
Cited by: 13
Author(s): Daniel Sobrido‐Cameán, Diego Robledo, Daniel Romaus-Sanjurjo, Vanessa Pérez-Cedrón, Laura Sánchez, Marı́a Celina Rodicio, Antón Barreiro‐Iglesias
Software Mentions: 1
Published: over 6 years ago

Projects: bioconductor: DESeq2

Enhanced Analysis

Science Score: 100/100

Bonuses:

Papers Mentioning DESeq2 9,583