bioconductor: DESeq2 | Projects | Ecosyste.ms: Papers

10.7717/peerj.5011

Comprehensive circular RNA expression profile in radiation-treated HeLa cells and analysis of radioresistance-related circRNAs
Cited by: 48
Author(s): Duo Yu, Yunfeng Li, Zhi‐Hui Ming, Hongyong Wang, Zuo-Ren Dong, Ling Qiu, Zhihui Wang
Software Mentions: 1
Published: over 8 years ago

10.3389/fphar.2020.570450

Transcriptome Profiling and Cytological Assessments for Identifying Regulatory Pathways Associated With Diorcinol N-Induced Autophagy in A3 Cells
Cited by: 6
Author(s): Xiaolong Yuan, Xiuqi Li, Kuo Xu, Xiaodong Hou, Zhongfeng Zhang, Xue Lü, Xinmin Liu, Peng Zhang
Software Mentions: 1
Published: almost 6 years ago

10.7717/peerj.10593

Transcriptome analysis reveals liver metabolism programming in kids from nutritional restricted goats during mid-gestation
Cited by: 5
Author(s): Chao Yang, Xiaoling Zhou, Hong Yang, Kefyalew Gebeyew, Qiongxian Yan, Chunfang Zhou, Zhixiong He, Zhiliang Tan
Software Mentions: 1
Published: over 5 years ago

10.1186/s40425-019-0643-8

Tumor regression mediated by oncogene withdrawal or erlotinib stimulates infiltration of inflammatory immune cells in EGFR mutant lung tumors
Cited by: 20
Author(s): Deborah Ayeni, Braden Miller, Alexandra Kuhlmann, Ping‐Chih Ho, Camila Robles-Oteiza, Mmaserame Gaefele, Stellar Levy, Fernando J. de Miguel, Curtis J. Perry, Tianxia Guan, Gerald Krystal, William W. Lockwood, Daniel Zelterman, Robert J. Homer, Zongzhi Liu, Susan M. Kaech, Katerina Politi
Software Mentions: 1
Published: about 7 years ago

10.7717/peerj.2819

Brain transcriptomes of harbor seals demonstrate gene expression patterns of animals undergoing a metabolic disease and a viral infection
Cited by: 5
Author(s): Stephanie M. Rosales, Rebecca L. Vega Thurber
Software Mentions: 1
Published: almost 10 years ago

10.1186/s12977-016-0275-8

Innate immune defects in HIV permissive cell lines
Cited by: 17
Author(s): Antonio Rausell, Miguel Muñoz, Raquel Martínez, Thierry Roger, Amalio Telenti, Angela Ciuffi
Software Mentions: 1
Published: over 10 years ago

10.1186/s12977-018-0436-z

Proceedings of the Frontiers in Retrovirology Conference 2018
Cited by: 0
Author(s):
Software Mentions: 1
Published: about 8 years ago

10.7717/peerj.8895

Comparative transcriptomics characterized the distinct biosynthetic abilities of terpenoid and paeoniflorin biosynthesis in herbaceous peony strains
Cited by: 4
Author(s): Bao-Wei Lu, Fengxia An, Liangjing Cao, Qian Gao, Xuan Wang, Yongjian Yang, Pengming Liu, Baoliang Yang, Tong Chen, Xin-Chang Li, Qinghua Chen, Jun Li
Software Mentions: 1
Published: over 6 years ago

10.1186/s12977-020-00533-1

Dynamic nanopore long-read sequencing analysis of HIV-1 splicing events during the early steps of infection
Cited by: 18
Author(s): Nam Nguyen Quang, Sophie Goudey, Emmanuel Ségéral, Ammara Mohammad, Sophie Lemoine, Corinne Blugeon, Margaux Versapuech, Jean-Christophe Paillart, Clarisse Berlioz‐Torrent, Stéphane Emiliani, Sarah Gallois-Montbrun
Software Mentions: 1
Published: about 6 years ago

10.3390/ijms21041371

Deconvolution of RNA-Seq Analysis of Hyperbaric Oxygen-Treated Mice Lungs Reveals Mesenchymal Cell Subtype Changes
Cited by: 9
Author(s): Yuan Yuan, Yilu Zhou, Yali Li, Catherine M. Hill, Rob M. Ewing, Mark G. Jones, Donna E. Davies, Zheng‐Lin Jiang, Yihua Wang
Software Mentions: 1
Published: over 6 years ago

10.1186/s12284-020-00436-x

RGG1, Involved in the Cytokinin Regulatory Pathway, Controls Grain Size in Rice
Cited by: 21
Author(s): Yajun Tao, Jun Miao, Jun Wang, Wenqi Li, Yongsheng Xu, Fangquan Wang, Jiang Yanjie, Zhihui Chen, Fangjun Fan, Mingliang Xu, Jie Yang
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12284-020-00446-9

The Amino Acid Transporter OsAAP4 Contributes to Rice Tillering and Grain Yield by Regulating Neutral Amino Acid Allocation through Two Splicing Variants
Cited by: 32
Author(s): Zhongming Fang, Bowen Wu, Yuanyuan Ji
Software Mentions: 1
Published: over 5 years ago

10.3389/fphar.2020.00199

Real-Ambient Particulate Matter Exposure-Induced Cardiotoxicity in C57/B6 Mice
Cited by: 23
Author(s): Lianhua Cui, Limei Shi, Daochuan Li, Xiaobo Li, Xuan Su, Liping Chen, Qixiao Jiang, Menghui Jiang, Jing Luo, Andong Ji, Chen Chen, Jianxun Wang, Jinglong Tang, Jingbo Pi, Rui Chen, Wen Chen, Rong Zhang, Yuxin Zheng
Software Mentions: 1
Published: over 6 years ago

10.3389/fphar.2020.01146

7-Hydroxycoumarin Attenuates Colistin-Induced Kidney Injury in Mice Through the Decreased Level of Histone Deacetylase 1 and the Activation of Nrf2 Signaling Pathway
Cited by: 14
Author(s): Jian Wang, Muhammad Ishfaq, Qianqian Fan, Chunli Chen, Jichang Li
Software Mentions: 1
Published: about 6 years ago

10.3389/fphar.2021.714556

MicroRNA-221-3p Suppresses the Microglia Activation and Seizures by Inhibiting of HIF-1α in Valproic Acid-Resistant Epilepsy
Cited by: 9
Author(s): Meng Fu, Yiqing Zhu, Junqi Zhang, Wei Wu, Yunxia Sun, Xuemei Zhang, Jie Tao, Zhiping Li
Software Mentions: 1
Published: about 5 years ago

10.3389/fphar.2020.614024

Paeoniflorin and Hydroxysafflor Yellow A in Xuebijing Injection Attenuate Sepsis-Induced Cardiac Dysfunction and Inhibit Proinflammatory Cytokine Production
Cited by: 16
Author(s): Xin-Tong Wang, Zhen Peng, Yingying An, Tao Shang, Guangxu Xiao, Shuang He, Xi Chen, Han Zhang, Yuefei Wang, Tao Wang, Junhua Zhang, Xiumei Gao, Yan Zhu, Yi Feng
Software Mentions: 1
Published: over 5 years ago

10.7717/peerj.8768

Transcriptome sequencing and analysis reveals the molecular response to selenium stimuli in Pueraria lobata (willd.) Ohwi
Cited by: 7
Author(s): Kunyuan Guo, Yiming Yao, Meng Yang, Yanni Li, Bin Wu, Xianming Lin
Software Mentions: 1
Published: over 6 years ago

10.7717/peerj.9661

Sequencing, assembly, annotation, and gene expression: novel insights into browning-resistant Luffa cylindrica
Cited by: 4
Author(s): Yahui Wang, Xiaohong Liu, Rongrong Zhang, Zhiming Yan, Ai‐Sheng Xiong, Xiaojun Su
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-018-32374-6

GWAS and eQTL analysis identifies a SNP associated with both residual feed intake and GFRA2 expression in beef cattle
Cited by: 38
Author(s): Marc G. Higgins, Claire Fitzsimons, Matthew McClure, Clare McKenna, Stephen Conroy, David A. Kenny, M. McGee, Sinéad M. Waters, Derek W. Morris
Software Mentions: 1
Published: about 8 years ago

10.1155/2021/5516399

Immune Characters and Plasticity of the Sentinel Lymph Node in Colorectal Cancer Patients
Cited by: 2
Author(s): Xiaoyun Li, Jingling Tang, Hang Du, Xinjun Wang, Liyun Wu, Peng Hu, Hua Zhang, Ruyi Zhang, Yuan Yang
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-018-32941-x

The imprinted gene Pw1/Peg3 regulates skeletal muscle growth, satellite cell metabolic state, and self-renewal
Cited by: 17
Author(s): Rosa Maria Correra, David Ollitrault, Mariana Valente, Alessia Mazzola, Bjorn T. Adalsteinsson, Anne C. Ferguson-Smith, Giovanna Marazzi, David Sassoon
Software Mentions: 1
Published: about 8 years ago

10.3389/fphar.2021.680081

Prediction of Srebp-1 as a Key Target of Qing Gan San Against MAFLD in Rats via RNA-Sequencing Profile Analysis
Cited by: 5
Author(s): Bendong Yang, Jingyue Sun, Shufei Liang, Peixuan Wu, Rui Lv, Ying He, Deqi Li, Wenlong Sun, Xinhua Song
Software Mentions: 1
Published: over 5 years ago

10.1155/2020/8873261

Genes Induced by Panax Notoginseng in a Rodent Model of Ischemia-Reperfusion Injury
Cited by: 2
Author(s): Li Meng, Qing Huang, LI Xue-bin, Ping Liang, Yueyong Li, Xiaohua Huang, Jingjie Zhao, Qiuping Chen, Rong Qiu, Lan Li, Chongdong Jian, Hanyu Yao, Jianmin Huang, Xionglin Tang, Zechen Wang, Zhongheng Wei, Jun Wu, Liuzhi Wei, Qiuju Wei, Qianli Tang, Lu Huang, Jihua Wei, Dinggui Lu, Qunqiang Luo, Keqin Xie, Yuanxin Ouyang, Jian Chen, Genliang Li, Linxue Luo, Limin He, Chenyi Zhuo, Anding Xu, Lingzhang Meng
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-018-33383-1

The Duality of the MAPK Signaling Pathway in the Control of Metabolic Processes and Cellulase Production in Trichoderma reesei
Cited by: 30
Author(s): Renato Graciano de Paula, Amanda Cristina Campos Antoniêto, Cláudia Batista Carraro, Douglas Christian Borges Lopes, Gabriela Félix Persinoti, Nalu Teixeira Aguiar Peres, Nilce Maria Martinez-Rossi, Rafael Silva‐Rocha, Roberto Nascimento Silva
Software Mentions: 1
Published: almost 8 years ago

10.3389/fphar.2021.695687

The Mitochondrial Na+/Ca2+ Exchanger Inhibitor CGP37157 Preserves Muscle Structure and Function to Increase Lifespan and Healthspan in Caenorhabditis elegans
Cited by: 4
Author(s): Paloma García-Casas, Pilar Álvarez-Illera, Eva Gómez-Orte, Juan Cabello, Rosalba I. Fonteríz, Mayte Montero, Javier Soto Álvarez
Software Mentions: 1
Published: over 5 years ago

10.3389/fphar.2021.729414

Naringin Exerts Therapeutic Effects on Mice Colitis: A Study Based on Transcriptomics Combined With Functional Experiments
Cited by: 9
Author(s): Jianyi Dong, Yuanyuan Chen, Fang Yang, Weidong Zhang, Kun Wei, Yongjian Xiong, Liang Wang, Zijuan Zhou, Changyi Li, Jingyu Wang, Dapeng Chen
Software Mentions: 1
Published: about 5 years ago

10.1093/infdis/jiy740

Longitudinal Analysis of Infant Stool Bacteria Communities Before and After Acute Febrile Malaria and Artemether-Lumefantrine Treatment
Cited by: 16
Author(s): Rabindra K. Mandal, Rosie J Crane, James A. Berkley, Wilson Gumbi, Juliana Wambua, Joyce M. Ngoi, Francis M. Ndungu, Nathan W. Schmidt
Software Mentions: 1
Published: almost 8 years ago

10.3389/fped.2021.618267

Oxidative Phosphorylation-Mediated E-Selectin Upregulation Is Associated With Endothelia–Monocyte Adhesion in Human Coronary Artery Endothelial Cells Treated With Sera From Patients With Kawasaki Disease
Cited by: 4
Author(s): Danfeng Zhang, Lingjuan Liu, Yuxing Yuan, Tiewei Lv, Xupei Huang, Jie Tian
Software Mentions: 1
Published: over 5 years ago

10.3389/fped.2020.00459

The SLC25A42 Transcript Is a Biomarker for Fetal Reprogramming in Response to Placental Insufficiency in Preterm Newborns Under 32 Weeks Gestation—A Pilot Study
Cited by: 3
Author(s): Fu‐Sheng Chou, Pei-Shan Wang
Software Mentions: 1
Published: about 6 years ago

10.3389/fped.2020.542413

Acquisition, Divergence, and Personalization of the Female Perineal Microbiomes Are Driven by Developmental Milestones and Disrupted by Urinary Tract Infection: A Pilot Study
Cited by: 2
Author(s): Elizabeth Lucas, Christina B. Ching, Shweta Saraswat, Shareef M Dabdoub, Purnima P Kumar, Sheryl S. Justice
Software Mentions: 1
Published: almost 6 years ago

10.1089/omi.2021.0068

Traces of SARS-CoV-2 RNA in Peripheral Blood Cells of Patients with COVID-19
Cited by: 8
Author(s): Ahmed Moustafa, Rana Salah Khalel, Ramy K. Aziz
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-018-34637-8

Dysregulated gene expression predicts tumor aggressiveness in African-American prostate cancer patients
Cited by: 21
Author(s): Hamdy Ali, Pei-Yau Lung, Andrew B. Sholl, Shaimaa A. Gad, Juan J. Bustamante, Johng S. Rhim, Gagan Deep, Jinfeng Zhang, Zakaria Y. Abd Elmageed
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41388-018-0197-0

LMTK3 confers chemo-resistance in breast cancer
Cited by: 29
Author(s): Justin Stebbing, Kalpit Shah, Lei Cheng Lit, Teresa Gagliano, Angeliki Ditsiou, Tingting Wang, Franz Wendler, Thomas R. Simon, Krisztián Szabó, Timothy O’Hanlon, Michael Dean, April Camilla Roslani, Swee Hung Cheah, Soo‐Chin Lee, Georgios Giamas
Software Mentions: 1
Published: over 8 years ago

10.7717/peerj.10529

Identification and analysis of lncRNA, microRNA and mRNA expression profiles and construction of ceRNA network in Talaromyces marneffei-infected THP-1 macrophage
Cited by: 8
Author(s): Yueqi Li, Wudi Wei, Sanqi An, Junjun Jiang, Jinhao He, Hong Zhang, Gang Wang, Jing Han, Bingyu Liang, Ye Li, Hao Liang
Software Mentions: 1
Published: over 5 years ago

10.20411/pai.v3i2.250

Fecal Host Transcriptomics for Non-invasive Human Mucosal Immune Profiling: Proof of Concept in Clostridium difficile Infection
Cited by: 8
Author(s): Robert Salais, Amanda Barrett, Kornelia Edes, Michael C. Graves, Litty Paul, Jenna Rychert, Bert K. Lopansri, Daniel T. Leung
Software Mentions: 1
Published: about 8 years ago

10.3389/fped.2021.669116

Genetic Signatures From RNA Sequencing of Pediatric Localized Scleroderma Skin
Cited by: 14
Author(s): Emily Mirizio, Christopher Liu, Qi Yan, Julia Waltermire, Roosha Mandel, Kaila L. Schollaert, Liza Konnikova, Xinjun Wang, Wei Chen, Kathryn S. Torok
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms20225726

Depletion of KNL2 Results in Altered Expression of Genes Involved in Regulation of the Cell Cycle, Transcription, and Development in Arabidopsis
Cited by: 6
Author(s): Anastassia Boudichevskaia, Andreas Houben, Anne Fiebig, Klára Procházková, Aleš Pečinka, Inna Lermontová
Software Mentions: 1
Published: almost 7 years ago

10.3389/fonc.2021.683725

Downregulation of miR-181b-5p Inhibits the Viability, Migration, and Glycolysis of Gallbladder Cancer by Upregulating PDHX Under Hypoxia
Cited by: 8
Author(s): Yiyu Qin, Yongliang Zheng, Cheng Huang, Yuanyuan Li, Min Gu, Qin Wu
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-018-36008-9

Pathway sensor-based functional genomics screening identifies modulators of neuronal activity
Cited by: 3
Author(s): Alexander Herholt, Ben Brankatschk, Nirmal Kannaiyan, Sergi Papiol, Sven P. Wichert, Michael C. Wehr, Moritz J. Rossner
Software Mentions: 1
Published: almost 8 years ago

10.3389/fonc.2019.01346

Intestinal Flora Disruption and Novel Biomarkers Associated With Nasopharyngeal Carcinoma
Cited by: 13
Author(s): Haiye Jiang, Jian Li, Bin Zhang, Rong Huang, Junhua Zhang, Ziwei Chen, Xueling Shang, Xisheng Li, Xin Nie
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-018-36316-0

Deep sequencing and transcriptome analysis to identify genes related to biosynthesis of aristolochic acid in Asarum heterotropoides
Cited by: 13
Author(s): Xiaohan Wang, Hui Fang, Yong-Cheng Yang, Shihai Yang
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41598-018-36932-w

Metabolome and transcriptome-wide effects of the carbon storage regulator A in enteropathogenic Escherichia coli
Cited by: 26
Author(s): Volker Berndt, Michael Beckstette, Marcel Volk, Petra Dersch, Mark Brönstrup
Software Mentions: 1
Published: over 7 years ago

10.3389/fonc.2021.619013

Overexpression of RhoV Promotes the Progression and EGFR-TKI Resistance of Lung Adenocarcinoma
Cited by: 12
Author(s): Hongjin Chen, Ruixue Xia, Long Jiang, Yong Zhou, Haojun Xu, Weiwei Peng, Chengyun Yao, Guoren Zhou, Yijie Zhang, Hongping Xia, Yongsheng Wang
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-018-36841-y

Discovery and evaluation of inhibitor of LARP6 as specific antifibrotic compound
Cited by: 29
Author(s): Branko Stefanovic, Zarko Manojlovic, Cynthia Vied, C H Badger, Lela Stefanovic
Software Mentions: 1
Published: over 7 years ago

10.3389/fonc.2021.649323

The ETS Inhibitor YK-4-279 Suppresses Thyroid Cancer Progression Independent of TERT Promoter Mutations
Cited by: 7
Author(s): Junyu Xue, Shiyong Li, Peijie Shi, Mengke Chen, Shuang Yu, Shubin Hong, Yanbing Li, Rengyun Liu, Hang Xiao
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-018-36953-5

Effects of the long-term storage of human fecal microbiota samples collected in RNAlater
Cited by: 34
Author(s): Julien Tap, Stéphanie Cools-Portier, Sonia Pavan, Anne Druesne, Lena Öhman, Hans Törnblom, Magnus Simrén, Muriel Derrien
Software Mentions: 1
Published: over 7 years ago

10.3389/fonc.2021.645979

HOXA13, Negatively Regulated by miR-139-5p, Decreases the Sensitivity of Gastric Cancer to 5-Fluorouracil Possibly by Targeting ABCC4
Cited by: 3
Author(s): Zhengqian Chen, Zhiwei Qin, Lei Li, Qi Wo, Chen Xia
Software Mentions: 1
Published: over 5 years ago

10.3389/fonc.2021.681250

Transcriptomic Analyses Reveal B-Cell Translocation Gene 2 as a Potential Therapeutic Target in Ovarian Cancer
Cited by: 3
Author(s): Wang Jia, Haonan Li, Liang Wang, Jing Zhang, Man Li, Liang Qiao, Jun Zhang, Likun Liu, Cuili Zhang, Jingchun Gao, Weiling Li
Software Mentions: 1
Published: about 5 years ago

10.3389/fonc.2021.617621

YBX3 Mediates the Metastasis of Nasopharyngeal Carcinoma via PI3K/AKT Signaling
Cited by: 11
Author(s): Xiaoqin Fan, Xina Xie, Ming Yang, Yujie Wang, Hanwei Wu, Tingting Deng, Xin Weng, Wang Wen, Guohui Nie
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-018-36785-3

Exon junction complex components Y14 and Mago still play a role in budding yeast
Cited by: 3
Author(s): Anita Boisramé, Hugo Devillers, Djamila Onésime, François Brunel, Juliette Pouch, Mathieu Piot, Cécile Neuveglise
Software Mentions: 1
Published: over 7 years ago

10.3389/fmicb.2020.532447

Impact of Ocean Warming and Acidification on Symbiosis Establishment and Gene Expression Profiles in Recruits of Reef Coral Acropora intermedia
Cited by: 10
Author(s): Yuhan Sun, Lei Jiang, Sanqiang Gong, Ming Guo, Xiangcheng Yuan, Guowei Zhou, Xinming Lei, Yuyang Zhang, Tao Yuan, Lian Ji, Pei‐Yuan Qian, Hui Huang
Software Mentions: 1
Published: about 6 years ago

10.3389/fmicb.2019.02769

Physiology and Transcriptional Analysis of (p)ppGpp-Related Regulatory Effects in Corynebacterium glutamicum
Cited by: 7
Author(s): Matthias Ruwe, Marcus Persicke, Tobias Busche, Benjamin Müller, Joern Kalinowski
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-018-37761-7

Telencephalon transcriptome analysis of chronically stressed adult zebrafish
Cited by: 12
Author(s): Victoria Huang, Anderson A. Butler, Farah D. Lubin
Software Mentions: 1
Published: over 7 years ago

10.3389/fmicb.2020.590325

A Cross-Sectional Study of Dairy Cattle Metagenomes Reveals Increased Antimicrobial Resistance in Animals Farmed in a Heavy Metal Contaminated Environment
Cited by: 12
Author(s): Natália Carrillo Gaeta, Emily Bean, Asha M. Miles, Daniel Ubriaco Oliveira Gonçalves de Carvalho, Mario Augusto Reyes Alemán, Jeferson Silva Carvalho, Lílian Gregory, Erika Ganda
Software Mentions: 1
Published: almost 6 years ago

10.3389/fmicb.2016.01592

A Sample-to-Sequence Protocol for Genus Targeted Transcriptomic Profiling: Application to Marine Synechococcus
Cited by: 1
Author(s): Frances Diana Pitt, Andrew Millard, Martin Ostrowski, Suat Dervish, Sophie Mazard, Ian T. Paulsen, Mikhail V. Zubkov, David J. Scanlan
Software Mentions: 1
Published: almost 10 years ago

10.3389/fmicb.2020.604485

More Than a Methanotroph: A Broader Substrate Spectrum for Methylacidiphilum fumariolicum SolV
Cited by: 18
Author(s): Nunzia Picone, Sepehr S. Mohammadi, Annemiek C. Waajen, Theo A. van Alen, Mike S. M. Jetten, Arjan Pol, Huub J. M. Op den Camp
Software Mentions: 1
Published: almost 6 years ago

10.3389/fmicb.2017.02114

Analysis of Microbiome Data in the Presence of Excess Zeros
Cited by: 191
Author(s): Abhishek Kaul, Siddhartha Mandal, Ori Davidov, Shyamal D. Peddada
Software Mentions: 1
Published: almost 9 years ago

10.3390/pathogens9060479

Identification of lncRNAs Involved in PCV2 Infection of PK-15 Cells
Cited by: 5
Author(s): Jin He, Chaoliang Leng, Jiazhen Pan, Aoqi Li, Hua Zhang, Cong Feng, Huanan Wang
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-018-36605-8

Transcriptomic profiles of tumor-associated neutrophils reveal prominent roles in enhancing angiogenesis in liver tumorigenesis in zebrafish
Cited by: 29
Author(s): Xiaojing Huo, Hankun Li, Zhen Li, Chuan Yan, Ira Agrawal, Sinnakaruppan Mathavan, Jing Liu, Zhiyuan Gong
Software Mentions: 1
Published: over 7 years ago

10.3389/fmicb.2020.591926

GapB Is Involved in Biofilm Formation Dependent on LrgAB but Not the SinI/R System in Bacillus cereus 0-9
Cited by: 6
Author(s): Juanmei Zhang, Meng Li, Yubing Zhang, Lidan Sang, Qing Liu, Linlin Zhao, Fengying Liu, Gang Wang
Software Mentions: 1
Published: almost 6 years ago

10.3389/fmicb.2021.557180

Distinct Changes Occur in the Human Breast Milk Microbiome Between Early and Established Lactation in Breastfeeding Guatemalan Mothers
Cited by: 21
Author(s): Emmanuel González, Nicholas J. B. Brereton, Chen Li, Lilian Lopez Leyva, Noel W. Solomons, Luis B. Agellon, Marilyn Scott, Kristine G. Koski
Software Mentions: 1
Published: over 5 years ago

10.1038/s41388-020-1259-7

Loss of the nuclear Wnt pathway effector TCF7L2 promotes migration and invasion of human colorectal cancer cells
Cited by: 40
Author(s): Janna Wenzel, Katja Rose, Elham Bavafaye Haghighi, Constanze Lamprecht, Gilles Rauen, Vivien Freihen, Rebecca Kesselring, Melanie Boerries, Andreas Hecht
Software Mentions: 1
Published: over 6 years ago

10.3389/fmicb.2021.628269

Burkholderiaceae Are Key Acetate Assimilators During Complete Denitrification in Acidic Cryoturbated Peat Circles of the Arctic Tundra
Cited by: 23
Author(s): Stefanie A. Hetz, Marcus A. Horn
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2018.02251

Comparative Time-Scale Gene Expression Analysis Highlights the Infection Processes of Two Amoebophrya Strains
Cited by: 10
Author(s): Sarah Farhat, Isabelle Florent, Benjamin Noël, Ehsan Kayal, Corinne Da Silva, Estelle Bigeard, Adriana Alberti, Karine Labadie, Erwan Corre, Jean‐Marc Aury, Stéphane Rombauts, Patrick Wincker, Laure Guillou, Betina M. Porcel
Software Mentions: 1
Published: about 8 years ago

10.3390/ijms21030774

Transcriptome Analysis Reveals the Different Response to Toxic Stress in Rootstock Grafted and Non-Grafted Cucumber Seedlings
Cited by: 14
Author(s): Xuemei Xiao, Jian Lv, Jianming Xie, Feng Zhi, Ning Ma, Li Ju, Jiangnan Yu, Alejandro Calderón-Urrea
Software Mentions: 1
Published: over 6 years ago

10.3390/pathogens7040092

Relation between Biofilm and Virulence in Vibrio tapetis: A Transcriptomic Study
Cited by: 13
Author(s): Sophie Rodrigues, Christine Paillard, Sabine van Dillen, Ali Tahrioui, Jean‐Marc Berjeaud, Alain Dufour, Alexis Bazire
Software Mentions: 1
Published: almost 8 years ago

10.3389/fmicb.2018.01602

Genetically Obese Human Gut Microbiota Induces Liver Steatosis in Germ-Free Mice Fed on Normal Diet
Cited by: 36
Author(s): Ruirui Wang, Hui Li, Xin Yang, Xinhe Xue, Liman Deng, Jian Shen, Menghui Zhang, Liping Zhao, Chenhong Zhang
Software Mentions: 1
Published: about 8 years ago

10.7554/eLife.62585

Proteomic and transcriptomic profiling reveal different aspects of aging in the kidney
Cited by: 52
Author(s): Yuka Takemon, Joel M. Chick, Isabela Gerdes Gyuricza, Daniel A. Skelly, Olivier Devuyst, Steven P. Gygi, Gary A. Churchill, Ron Korstanje
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2019.02829

A Similar Secretome Disturbance as a Hallmark of Non-pathogenic Botrytis cinerea ATMT-Mutants?
Cited by: 15
Author(s): Amélie de Vallée, Pascal Bally, Christophe Bruel, Lucie Chandat, Mathias Choquer, Cindy Dieryckx, Jean-William Dupuy, Sophie Kaiser, Marie‐Pascale Latorse, Elise Loisel, Géraldine Mey, Georges Morgant, Christine Rascle, Julia Schumacher, Adeline Simon, Eytham Souibgui, Muriel Viaud, François Villalba, Nathalie Poussereau
Software Mentions: 1
Published: almost 7 years ago

10.3389/fmicb.2021.718487

Resource Allocation During the Transition to Diazotrophy in Klebsiella oxytoca
Cited by: 5
Author(s): Christopher Waite, Anya Lindström Battle, Mark H. Bennett, Matthew Carey, Chun K Hong, Ioly Kotta‐Loizou, Martin Buck, Julia Schumacher
Software Mentions: 1
Published: about 5 years ago

10.3389/fmicb.2020.556064

Transcriptomic and Phenotypic Analysis of a spoIIE Mutant in Clostridium beijerinckii
Cited by: 7
Author(s): Mamou Diallo, Nicolas Kint, Marc Monot, Florent Collas, Isabelle Martin‐Verstraete, John van der Oost, S.W.M. Kengen, Ana M. López-Contreras
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-019-39089-2

Blubber transcriptome responses to repeated ACTH administration in a marine mammal
Cited by: 16
Author(s): Jared Deyarmin, Molly McCormley, Cory D. Champagne, Alicia Stephan, Laura Pujade Busqueta, Daniel E. Crocker, Dorian S. Houser, Jane Khudyakov
Software Mentions: 1
Published: over 7 years ago

10.3389/fmicb.2018.02558

Mechanistic Insights Into the Cross-Feeding of Ruminococcus gnavus and Ruminococcus bromii on Host and Dietary Carbohydrates
Cited by: 99
Author(s): Emmanuelle H. Crost, Gwénaëlle Le Gall, Jenny A. Laverde-Gomez, Indrani Mukhopadhya, Harry J. Flint, Nathalie Juge
Software Mentions: 1
Published: almost 8 years ago

10.3389/fmicb.2018.03201

Early Response of Sulfolobus acidocaldarius to Nutrient Limitation
Cited by: 18
Author(s): Lisa Franziska Bischof, M. Florencia Haurat, Lena Hoffmann, Andreas Albersmeier, Jacqueline Wolf, Astrid Neu, Trong Khoa Pham, Stefan P. Albaum, Tobias Jakobi, Stefan Schouten, Meina Neumann‐Schaal, Phillip C. Wright, Jörn Kalinowski, Bettina Siebers, Sonja Albers
Software Mentions: 1
Published: over 7 years ago

10.3389/fmicb.2020.01617

Diversity of Cellulase-Producing Filamentous Fungi From Tibet and Transcriptomic Analysis of a Superior Cellulase Producer Trichoderma harzianum LZ117
Cited by: 18
Author(s): Jiaxiang Li, Fei Zhang, Dan-Dan Jiang, Jun Li, Feng-Lou Wang, Zhang Zhang, Wei Wang, Xin‐Qing Zhao
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-019-39111-7

Towards Improving Embryo Prioritization: Parallel Next Generation Sequencing of DNA and RNA from a Single Trophectoderm Biopsy
Cited by: 11
Author(s): Noga Fuchs Weizman, Brandon A. Wyse, Ran Antes, Zenon Ibarrientos, Mugundhine Sangaralingam, Gelareh Motamedi, Valeriy Kuznyetsov, Svetlana Madjunkova, Clifford L. Librach
Software Mentions: 1
Published: over 7 years ago

10.3389/fmicb.2020.00151

The Epipeptide YydF Intrinsically Triggers the Cell Envelope Stress Response of Bacillus subtilis and Causes Severe Membrane Perturbations
Cited by: 26
Author(s): Philipp F. Popp, Alhosna Benjdia, Henrik Strahl, Olivier Berteau, Thorsten Mascher
Software Mentions: 1
Published: over 6 years ago

10.3390/pathogens10091179

Intestinal Transcriptomic and Histologic Profiling Reveals Tissue Repair Mechanisms Underlying Resistance to the Parasite Ceratonova shasta
Cited by: 8
Author(s): Damien Barrett, Itziar Estensoro, Ariadna Sitjà‐Bobadilla, Jerri L. Bartholomew
Software Mentions: 1
Published: about 5 years ago

10.3389/fmicb.2017.01811

Transcriptomic Analysis of the Adaptation of Listeria monocytogenes to Lagoon and Soil Matrices Associated with a Piggery Environment: Comparison of Expression Profiles
Cited by: 16
Author(s): Anne-Laure Vivant, Jérémy Desneux, Anne‐Marie Pourcher, Pascal Piveteau
Software Mentions: 1
Published: about 9 years ago

10.3390/pathogens10010063

Plant Health and Sound Vibration: Analyzing Implications of the Microbiome in Grape Wine Leaves
Cited by: 10
Author(s): Birgit Wassermann, Lisé Korsten, Gabriele Berg
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2017.02489

Physiological and Pathological Transcriptional Activation of Endogenous Retroelements Assessed by RNA-Sequencing of B Lymphocytes
Cited by: 29
Author(s): Jan Attig, George R. Young, Jonathan P. Stoye, George Kassiotis
Software Mentions: 1
Published: almost 9 years ago

10.3390/biom10010150

Identification of miRNAs Enriched in Extracellular Vesicles Derived from Serum Samples of Breast Cancer Patients
Cited by: 33
Author(s): Patrícia Midori Murobushi Ozawa, Evelyn Vieira, Débora S. Lemos, Ingrid L.M. Souza, Sı́lvio M. Zanata, Vânia C. S. Pankievicz, Thalita Regina Tuleski, Emanuel Maltempi de Souza, Pryscilla Fanini Wowk, Cı́cero de Andrade Urban, Fusakuni Kuroda, Rubens Silveira de Lima, Rodrigo Coutinho de Almeida, Daniela Fiori Gradia, Iglenir João Cavalli, Luciane R. Cavalli, Danielle Malheiros, Enilze M.S.F. Ribeiro
Software Mentions: 1
Published: over 6 years ago

Projects: bioconductor: DESeq2

Enhanced Analysis

Science Score: 100/100

Bonuses:

Papers Mentioning DESeq2 9,583