bioconductor: DESeq2 | Projects | Ecosyste.ms: Papers

10.1186/s12864-015-1907-4

Early transcriptional events linked to induction of diapause revealed by RNAseq in larvae of drosophilid fly, Chymomyza costata
Cited by: 74
Author(s): Rodolphe Poupardin, Konrad Schöttner, Jaroslava Korbelová, Jan Provazník, David Doležel, Dinko Pavlinic, Vladimı́r Beneš, Vladimı́r Košťál
Software Mentions: 1
Published: about 11 years ago

10.1038/s41438-019-0206-7

Effective genome editing and identification of a regiospecific gallic acid 4-O-glycosyltransferase in pomegranate (Punica granatum L.)
Cited by: 28
Author(s): Liming Chang, Sheng Wu, Li Tian
Software Mentions: 1
Published: almost 7 years ago

10.3390/jof7060463

MoGLN2 Is Important for Vegetative Growth, Conidiogenesis, Maintenance of Cell Wall Integrity and Pathogenesis of Magnaporthe oryzae
Cited by: 12
Author(s): Osakina Aron, Min Wang, Lian‐Yu Lin, Wajjiha Batool, Birong Lin, Abdul Shabbir, Zonghua Wang, Wei Tang
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0230266

Comparison of transcriptomes from two chemosensory organs in four decapod crustaceans reveals hundreds of candidate chemoreceptor proteins
Cited by: 35
Author(s): Mihika T. Kozma, Hanh Ngo-Vu, YW Wong, Neal S. Shukla, Shrikant Pawar, Adriano Senatore, Manfred Schmidt, Charles D. Derby
Software Mentions: 1
Published: over 6 years ago

10.1186/s12915-020-00925-x

Comparative analysis of morabine grasshopper genomes reveals highly abundant transposable elements and rapidly proliferating satellite DNA repeats
Cited by: 29
Author(s): Octavio M. Palacios-Gimenez, Julia Koelman, Marc Palmada-Flores, Tessa M. Bradford, Karl K. Jones, Steven J. Cooper, Takeshi Kawakami, Alexander Suh
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41438-020-00455-1

Chromosome-scale genome assembly provides insights into the evolution and flavor synthesis of passion fruit (Passiflora edulis Sims)
Cited by: 52
Author(s): Zhiqiang Xia, Dongmei Huang, Shengkui Zhang, Wenquan Wang, Funing Ma, Bin Wu, Yi Xu, Biao Xu, Di Chen, Meiling Zou, Hongtao Xu, Xiaojin Zhou, Rulin Zhan, Santai Song
Software Mentions: 1
Published: over 5 years ago

10.1186/s13100-021-00243-1

Upregulation of selected HERVW loci in multiple sclerosis
Cited by: 2
Author(s): Sofía Macías-Redondo, Mark Strunk, Alberto Cebollada, Jahan Ara, Javier Montero Martín, Jon Schoorlemmer
Software Mentions: 1
Published: about 5 years ago

10.7150/thno.54824

Downregulation of death receptor 4 is tightly associated with positive response of EGFR mutant lung cancer to EGFR-targeted therapy and improved prognosis
Cited by: 14
Author(s): Shuo Zhang, Zhe Chen, Pengpeng Shi, Songqing Fan, Yong He, Qiming Wang, Yixiang Li, Suresh S. Ramalingam, Taofeek K. Owonikoko, Shi‐Yong Sun
Software Mentions: 1
Published: over 5 years ago

10.3390/v12091003

Maternal Influenza A Virus Infection Restricts Fetal and Placental Growth and Adversely Affects the Fetal Thymic Transcriptome
Cited by: 12
Author(s): Hana Van Campen, Jeanette V. Bishop, Vikki M. Abrahams, Helle Bielefeldt‐Ohmann, Candace K. Mathiason, Gerrit J. Bouma, Quinton A. Winger, Christie Mayo, Richard A. Bowen, Thomas Hansen
Software Mentions: 1
Published: about 6 years ago

10.1038/s41438-021-00576-1

DNA repair- and nucleotide metabolism-related genes exhibit differential CHG methylation patterns in natural and synthetic polyploids (Brassica napus L.)
Cited by: 10
Author(s): Ling Yin, Zhendong Zhu, Liangjun Huang, Xuan Luo, Yun Li, Chaowen Xiao, Jin Yang, Jisheng Wang, Qiong Zou, Lanrong Tao, Zeming Kang, Rong Tang, Maolin Wang, Shaohong Fu
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0143161

Tumor Repression of VCaP Xenografts by a Pyrrole-Imidazole Polyamide
Cited by: 25
Author(s): Amanda E. Hargrove, Thomas F. Martínez, Alissa A. Hare, Alexis A. Kurmis, John W. Phillips, Sudha Sud, Kenneth J. Pienta, Peter B. Dervan
Software Mentions: 1
Published: almost 11 years ago

10.1186/s12864-020-06884-5

Identification of candidate genes and regulatory factors related to growth rate through hypothalamus transcriptome analyses in broiler chickens
Cited by: 9
Author(s): Katarzyna Piórkowska, Kacper Żukowski, Katarzyna Połtowicz, Joanna Nowak, Katarzyna Ropka‐Molik, Natalia Derebecka, Joanna Wesoły, Dorota Wojtysiak
Software Mentions: 1
Published: about 6 years ago

10.1038/s41438-020-0262-z

Lipidomic and transcriptomic analysis reveals reallocation of carbon flux from cuticular wax into plastid membrane lipids in a glossy “Newhall” navel orange mutant
Cited by: 20
Author(s): Hu Wan, Hongbo Liu, Jingyu Zhang, Yi Lyu, Zhuoran Li, Yuan He, Xiaoliang Zhang, Xiuxin Deng, Yariv Brotman, Alisdair R. Fernie, Yunjiang Cheng, Weiwei Wen
Software Mentions: 1
Published: over 6 years ago

10.3390/microorganisms8020283

Adaptation to Photooxidative Stress: Common and Special Strategies of the Alphaproteobacteria Rhodobacter sphaeroides and Rhodobacter capsulatus
Cited by: 11
Author(s): Mathieu K. Licht, Aaron M. Nuss, Marcel Volk, Anne Konzer, Michael Beckstette, Bork A. Berghoff, Gabriele Klug
Software Mentions: 1
Published: over 6 years ago

10.1038/s41419-021-04018-7

The regulation of ferroptosis by MESH1 through the activation of the integrative stress response
Cited by: 19
Author(s): Chao-Chieh Lin, Chien‐Kuang Cornelia Ding, Tianai Sun, Jianli Wu, Kai-Yuan Chen, Pei Zhou, Jen-Tsan Chi
Software Mentions: 1
Published: about 5 years ago

10.1038/s41419-021-03654-3

Synergistic effect of the TLR5 agonist CBLB502 and its downstream effector IL-22 against liver injury
Cited by: 9
Author(s): Nicolas Melin, Daniel Sánchez-Taltavull, René Fahrner, Adrian Keogh, Michel Dosch, Isabel Büchi, Yitzhak Zimmer, Michaela Medová, Guido Beldi, Daniel M. Aebersold, Daniel Candinas, Deborah Stroka
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0220365

Transcriptomic differences noted in Glaesserella parasuis between growth in broth and on agar
Cited by: 2
Author(s): Samantha J. Hau, Kathy T. Mou, Darrell O. Bayles, Susan L. Brockmeier
Software Mentions: 1
Published: about 7 years ago

10.1038/s41438-020-00366-1

The GAMYB-like gene SlMYB33 mediates flowering and pollen development in tomato
Cited by: 28
Author(s): Yan Zhang, Bo Zhang, Yang Tao, Jie Zhang, Bin Liu, Xiangqiang Zhan, Yan Liang
Software Mentions: 1
Published: about 6 years ago

10.3390/nu12123701

Understanding the Heterogeneity of Obesity and the Relationship to the Brain-Gut Axis
Cited by: 6
Author(s): Tony Hung, Tien S. Dong, Zixi Chen, David Elashoff, Janet S. Sinsheimer, Jonathan P. Jacobs, Venu Lagishetty, Priten Vora, Jean Stains, Emeran A. Mayer, Abha R. Gupta
Software Mentions: 1
Published: almost 6 years ago

10.7150/thno.55939

Therapeutic effects of dihydroartemisinin in multiple stages of colitis-associated colorectal cancer
Cited by: 23
Author(s): Bingjun Bai, Fei Wu, Kangkang Ying, Yuzi Xu, Lina Shan, Yiming Lv, Xing Gao, Dengyong Xu, Jun Lü, Binbin Xie
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0237023

Ultraviolet B irradiation enhances the secretion of exosomes by human primary melanocytes and changes their exosomal miRNA profile
Cited by: 17
Author(s): Zeren Shen, Jiaqi Sun, Jinjin Shao, Jinghong Xu
Software Mentions: 1
Published: about 6 years ago

10.1038/s41438-021-00518-x

A gene that underwent adaptive evolution, LAC2 (LACCASE), in Populus euphratica improves drought tolerance by improving water transport capacity
Cited by: 20
Author(s): Zhimin Niu, Guiting Li, Hongbo Hu, Jiaojiao Lv, Qiwei Zheng, Jianquan Liu, Dongshi Wan
Software Mentions: 1
Published: over 5 years ago

10.3390/microorganisms9030604

Effects of the Inclusion of Fermented Mulberry Leaves and Branches in the Gestational Diet on the Performance and Gut Microbiota of Sows and Their Offspring
Cited by: 5
Author(s): Yuping Zhang, Chang Yin, Martine Schroyen, Nadia Everaert, Teng Ma, Hongfu Zhang
Software Mentions: 1
Published: over 5 years ago

10.1128/AEM.00483-18

Enrichment of Clinically Relevant Organisms in Spontaneous Preterm-Delivered Placentas and Reagent Contamination across All Clinical Groups in a Large Pregnancy Cohort in the United Kingdom
Cited by: 60
Author(s): Lydia J. Leon, Ronan Doyle, Ernest Diez Benavente, Taane G. Clark, Nigel Klein, Philip Stanier, Gudrun E. Moore
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0238380

Transcriptional and immunohistological assessment of immune infiltration in pancreatic cancer
Cited by: 8
Author(s): Brady Bernard, Venkatesh Rajamanickam, Christopher Dubay, Brian D. Piening, Emilio Alonso, Zeljka Jutric, Ephraim Tang, Pippa Newell, Paul Hansen, Terry R. Medler, Andrew Gunderson, Kristina H. Young, Carlo Bifulco, Joanna Pucliowska, Marka R. Crittenden, Michael Gough
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0230110

Comparative transcriptomic analysis reveals novel roles of transcription factors and hormones during the flowering induction and floral bud differentiation in sweet cherry trees (Prunus avium L. cv. Bing)
Cited by: 22
Author(s): Luis Villar, Ixia Lienqueo, Analía Llanes, Pamela Rojas, J. Pérez, Francisco Correa, Boris Sagredo, Oscar Masciarelli, Virginia Luna, Rubén Almada
Software Mentions: 1
Published: over 6 years ago

10.1038/s41438-020-00451-5

Lignin provides mechanical support to herbaceous peony (Paeonia lactiflora Pall.) stems
Cited by: 26
Author(s): Daqiu Zhao, Yuting Luan, Xing Xia, Wanliang Shi, Yuhan Tang, Jun Tao
Software Mentions: 1
Published: almost 6 years ago

10.3390/jof7070525

Micafungin-Induced Cell Wall Damage Stimulates Morphological Changes Consistent with Microcycle Conidiation in Aspergillus nidulans
Cited by: 5
Author(s): Samantha Reese, Cynthia Chelius, Wayne R. Riekhof, Mark R. Marten, Steven D. Harris
Software Mentions: 1
Published: about 5 years ago

10.1111/1759-7714.13442

Relationship between intestinal flora structure and metabolite analysis and immunotherapy efficacy in Chinese <scp>NSCLC</scp> patients
Cited by: 41
Author(s): Peng Song, Dongliang Yang, Hanping Wang, Xiaoxia Cui, Xiaoyan Si, Xiaolin Zhang, Li Zhang
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms21144823

Distal-Less Homeobox 5 Is a Therapeutic Target for Attenuating Hypertrophy and Apoptosis of Mesenchymal Progenitor Cells
Cited by: 6
Author(s): John Twomey‐Kozak, Salomi Desai, Wenguang Liu, Neill Y. Li, Nicholas J. Lemme, Qian Chen, Brett D. Owens, Chathuraka T. Jayasuriya
Software Mentions: 1
Published: about 6 years ago

10.3390/v10120713

Transcriptional and Small RNA Responses of the White Mold Fungus Sclerotinia sclerotiorum to Infection by a Virulence-Attenuating Hypovirus
Cited by: 27
Author(s): Shin-Yi Lee Marzano, Achal Neupane, Leslie L. Domier
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41438-021-00520-3

The histone variant Sl_H2A.Z regulates carotenoid biosynthesis and gene expression during tomato fruit ripening
Cited by: 13
Author(s): Xuedong Yang, Xuelian Zhang, Youxin Yang, Hui Zhang, Weimin Zhu, Wen-Feng Nie
Software Mentions: 1
Published: over 5 years ago

10.3390/v10060332

Transcriptomic Analysis of the Campylobacter jejuni Response to T4-Like Phage NCTC 12673 Infection
Cited by: 39
Author(s): Jessica Sacher, Annika Flint, James Butcher, Bob Blasdel, Hayley M Reynolds, Rob Lavigne, Alain Stintzi, Christine M. Szymanski
Software Mentions: 1
Published: over 8 years ago

10.1016/j.tiv.2021.105198

CD34+ derived macrophage and dendritic cells display differential responses to paraquat
Cited by: 3
Author(s): Leonie Francina Hendrina Fransen, Martin O. Leonard
Software Mentions: 1
Published: about 5 years ago

10.1038/s41438-019-0231-6

The ability to manipulate ROS metabolism in pepper may affect aphid virulence
Cited by: 8
Author(s): Mengjing Sun, Roeland E. Voorrips, Martijn van Kaauwen, Richard G. F. Visser, Ben Vosman
Software Mentions: 1
Published: over 6 years ago

10.1177/0192623320905803

Assessment of the Mode of Action Underlying the Effects of GenX in Mouse Liver and Implications for Assessing Human Health Risks
Cited by: 32
Author(s): Grace A. Chappell, Chad M. Thompson, Jeffrey C. Wolf, John M. Cullen, James E. Klaunig, Laurie C. Haws
Software Mentions: 1
Published: over 6 years ago

10.1038/s41438-021-00588-x

Dynamic changes in transposable element and gene methylation in mulberry (Morus notabilis) in response to Botrytis cinerea
Cited by: 15
Author(s): Youchao Xin, Bi Ma, Qiwei Zeng, Wenmin He, Meiling Qin, Ningjia He
Software Mentions: 1
Published: about 5 years ago

10.1038/s41419-021-03453-w

Identification of a long non-coding RNA regulator of liver carcinoma cell survival
Cited by: 4
Author(s): Yulia Rybakova, John Gonzalez, Roman L. Bogorad, Vikash P. Chauhan, Yize L. Dong, Charles A. Whittaker, Timofei S. Zatsepin, Victor Koteliansky, Daniel G. Anderson
Software Mentions: 1
Published: over 5 years ago

10.3390/toxics9030048

Transcriptomic and Histopathological Effects of Bifenthrin to the Brain of Juvenile Rainbow Trout (Oncorhynchus mykiss)
Cited by: 14
Author(s): Jason T. Magnuson, Kara E. Huff Hartz, Corie A. Fulton, Michael J. Lydy, Daniel Schlenk
Software Mentions: 1
Published: over 5 years ago

10.3390/toxics9080179

Effect of Polystyrene Microplastics on Rice Seed Germination and Antioxidant Enzyme Activity
Cited by: 43
Author(s): Qiuge Zhang, Mengsai Zhao, Fansong Meng, Yongli Xiao, Wei Dai, Yaning Luan
Software Mentions: 1
Published: about 5 years ago

10.1038/s41438-020-00387-w

Depicting the battle between nectarine and Monilinia laxa: the fruit developmental stage dictates the effectiveness of the host defenses and the pathogen’s infection strategies
Cited by: 21
Author(s): Marta Balsells-Llauradó, Christian J. Silva, J. Usall, Núria Vall‐llaura, Sandra Serrano-Prieto, Neus Teixidó, Saskia D Mesquida-Pesci, Antonieta De Cal, Bárbara Blanco-Ulate, Rosário Torres
Software Mentions: 1
Published: almost 6 years ago

10.1016/j.ibror.2018.06.001

The transcriptome of the rat subfornical organ is altered in response to early postnatal overnutrition
Cited by: 7
Author(s): Colleen S. Peterson, Shuo Huang, Samantha A. Lee, Alastair V. Ferguson, Mark Fry
Software Mentions: 1
Published: almost 8 years ago

10.3390/microorganisms9030575

Transcriptome Signatures in Pseudomonas simiae WCS417 Shed Light on Role of Root-Secreted Coumarins in Arabidopsis-Mutualist Communication
Cited by: 9
Author(s): Ke Yu, Ioannis A. Stringlis, Sietske van Bentum, Ronnie de Jonge, L. Basten Snoek, Corné M. J. Pieterse, Peter A. H. M. Bakker, Roeland L. Berendsen
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms21145076

Expression Profiling and Functional Characterization of miR-26a and miR-130a in Regulating Zhongwei Goat Hair Development via the TGF-β/SMAD Pathway
Cited by: 9
Author(s): Yangyang Ding, Xianglan Xue, Zhanfa Liu, Yong Ye, Ping Xiao, Yong‐Jin Pu, Weijun Guan, Joram M. Mwacharo, Yuehui Ma, Qianjun Zhao
Software Mentions: 1
Published: about 6 years ago

10.1002/iid3.366

Transcriptomic analysis reveals novel mechanisms of SARS‐CoV‐2 infection in human lung cells
Cited by: 12
Author(s): Shaomin Yang, Songbin Wu, Zhijian Yu, Jia-Bin Huang, X.Y. Zhong, Xiao Dong Liu, Hua Zhu, Lizu Xiao, Qi Deng, Wuping Sun
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12915-020-0764-z

DDX39B interacts with the pattern recognition receptor pathway to inhibit NF-κB and sensitize to alkylating chemotherapy
Cited by: 14
Author(s): Szymon J. Szymura, Giovanna M. Bernal, Longtao Wu, Zhongqin Zhang, Clayton D. Crawley, David J. Voce, Paige-Ashley Campbell, Diana E. Ranoa, Ralph R. Weichselbaum, Bakhtiar Yamini
Software Mentions: 1
Published: over 6 years ago

10.3390/v10010013

Regulation of CD4 Receptor and HIV-1 Entry by MicroRNAs-221 and -222 during Differentiation of THP-1 Cells
Cited by: 11
Author(s): Robert Lodge, Julian C. Gilmore, Jérémy A. Ferreira Barbosa, Félix Lombard‐Vadnais, Éric A. Cohen
Software Mentions: 1
Published: over 8 years ago

10.3390/microorganisms7100436

Helicobacter pylori Stress-Response: Definition of the HrcA Regulon
Cited by: 11
Author(s): Davide Roncarati, Eva Pinatel, Elisabetta Fiore, Clelia Peano, Stefany Loibman, Vincenzo Scarlato
Software Mentions: 1
Published: almost 7 years ago

10.1098/rsob.160012

Acute stress is detrimental to heart regeneration in zebrafish
Cited by: 46
Author(s): Pauline Sallin, Anna Jaźwińska
Software Mentions: 1
Published: over 10 years ago

10.1016/j.immuni.2018.06.012

PD-1 Controls Follicular T Helper Cell Positioning and Function
Cited by: 294
Author(s): Jingwen Shi, Shiyue Hou, Qian Fang, Xin Liu, Xiaolong Liu, Hai Qi
Software Mentions: 1
Published: about 8 years ago

10.3390/toxins10040135

Phenotypic Variation in Mojave Rattlesnake (Crotalus scutulatus) Venom Is Driven by Four Toxin Families
Cited by: 32
Author(s): Jason L. Strickland, Andrew J. Mason, Darin R. Rokyta, Christopher L. Parkinson
Software Mentions: 1
Published: over 8 years ago

10.1016/j.immuni.2019.01.009

Chemokine Receptor Redundancy and Specificity Are Context Dependent
Cited by: 83
Author(s): Douglas P. Dyer, Laura Medina-Ruiz, Robin Bartolini, Fabian Schuette, Catherine E. Hughes, Kenneth Pallas, Francesca Vidler, Megan K. L. MacLeod, Christopher J. Kelly, Kit Ming Lee, Christopher A.H. Hansell, Gerard J. Graham
Software Mentions: 1
Published: over 7 years ago

10.1186/s12864-019-5524-5

The NAC family transcription factor GmNAC42–1 regulates biosynthesis of the anticancer and neuroprotective glyceollins in soybean
Cited by: 21
Author(s): Asraful Jahan, Brianna Harris, Matthew Lowery, Katie Coburn, Aniello M. Infante, Ryan Percifield, Amanda G. Ammer, Nik Kovinich
Software Mentions: 1
Published: over 7 years ago

10.1016/j.immuni.2019.05.004

The Intestine Harbors Functionally Distinct Homeostatic Tissue-Resident and Inflammatory Th17 Cells
Cited by: 202
Author(s): Sara Omenetti, Claudio Bussi, Amina Metidji, Andrea Iseppon, Sunjae Lee, Mauro Tolaini, Ying Liu, Gavin Kelly, Probir Chakravarty, Saeed Shoaie, Maximiliano G. Gutiérrez, Brigitta Stockinger
Software Mentions: 1
Published: about 7 years ago

10.3390/toxins11020097

Aequipecten opercularis) Digestive Gland after Exposure to Domoic Acid-Producing Pseudo-nitzschia
Cited by: 13
Author(s): Pablo Ventoso, A. Pazos, M. Luz Pérez‐Parallé, Juan Blanco, Juan Carlos Triviño, José Manuel Otón Sánchez
Software Mentions: 1
Published: over 7 years ago

10.3390/cells9040874

Small Non-Coding RNA Profiling Identifies miR-181a-5p as a Mediator of Estrogen Receptor Beta-Induced Inhibition of Cholesterol Biosynthesis in Triple-Negative Breast Cancer
Cited by: 22
Author(s): Elena Alexandrova, Jessica Lamberti, Pasquale Saggese, Giovanni Pecoraro, Domenico Memoli, Valeria Mirici Cappa, Maria Ravo, Roberta Iorio, Roberta Tarallo, Francesca Rizzo, Francesca Collina, Monica Cantile, Maurizio Di Bonito, Gerardo Botti, Giovanni Nassa, Alessandro Weisz, Giorgio Giurato
Software Mentions: 1
Published: over 6 years ago

10.3390/toxins11070400

Distinct Transcriptional Changes in Response to Patulin Underlie Toxin Biosorption Differences in Saccharomyces cerevisiae
Cited by: 8
Author(s): Christian I. Oporto, Carlos A. Villarroel, Sebastián M. Tapia, Verónica García, Francisco A. Cubillos
Software Mentions: 1
Published: about 7 years ago

10.4049/immunohorizons.1900099

The Taste Receptor TAS1R3 Regulates Small Intestinal Tuft Cell Homeostasis
Cited by: 42
Author(s): Michael R. Howitt, Ying Cao, Matthew B Gologorsky, Jessica A. Li, Adam L. Haber, Moshe Biton, Jessica Lang, Monia Michaud, Aviv Regev, Wendy S. Garrett
Software Mentions: 1
Published: over 6 years ago

10.3390/toxins11090536

The Effect of Blue Light on the Production of Citrinin in Monascus purpureus M9 by Regulating the mraox Gene through lncRNA AOANCR
Cited by: 18
Author(s): Hua Yang, Xufeng Wang, Zhenjing Li, Qingbin Guo, Mingguan Yang, Di Chen, Changlu Wang
Software Mentions: 1
Published: about 7 years ago

10.3390/toxins11100553

Effects of Essential Oil Citral on the Growth, Mycotoxin Biosynthesis and Transcriptomic Profile of Alternaria alternata
Cited by: 36
Author(s): Liuqing Wang, Nan Jiang, Duo Wang, Meng Wang
Software Mentions: 1
Published: about 7 years ago

10.1098/rsob.160293

Peripheral self-reactivity regulates antigen-specific CD8 T-cell responses and cell division under physiological conditions
Cited by: 6
Author(s): Lee Kim Swee, Zhen Tan, Anna Smerdel-Ramoya, Norimasa Yoshida, Harshil Patel, Gijsbert M. Grotenbreg, Eva‐Maria Frickel, Hidde L. Ploegh
Software Mentions: 1
Published: almost 10 years ago

10.1016/j.virusres.2020.198293

Transcriptome analysis provides insights into the responses of sweet potato to sweet potato virus disease (SPVD)
Cited by: 10
Author(s): Ryland Bednarek, Maria David, Segundo Fuentes, Jan Kreuze, Zhangjun Fei
Software Mentions: 1
Published: over 5 years ago

10.1128/IAI.00866-16

The Rhomboid Protease GlpG Promotes the Persistence of Extraintestinal Pathogenic Escherichia coli within the Gut
Cited by: 18
Author(s): Colin W. Russell, Amanda C Richards, Alexander S. Chang, Matthew Mulvey
Software Mentions: 1
Published: over 9 years ago

10.1128/IAI.01423-15

Genes Required for the Fitness of Salmonella enterica Serovar Typhimurium during Infection of Immunodeficient gp91 −/− phox Mice
Cited by: 22
Author(s): A. Grant, Olusegun Oshota, Roy R. Chaudhuri, Matthew Mayho, Sarah Peters, Simon Clare, Duncan J. Maskell, Pietro Mastroeni
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0190075

The impact of persistent bacterial bronchitis on the pulmonary microbiome of children
Cited by: 22
Author(s): Leah Cuthbertson, Vanessa Craven, Lynne Bingle, William Cookson, Mark L. Everard, Miriam F. Moffatt
Software Mentions: 1
Published: over 8 years ago

10.1128/IAI.00661-18

Characterization of Host Responses during Pseudomonas aeruginosa Acute Infection in the Lungs and Blood and after Treatment with the Synthetic Immunomodulatory Peptide IDR-1002
Cited by: 15
Author(s): Kelli Wuerth, Ahwon Lee, Reza Falsafi, Erin E. Gill, Robert E. W. Hancock
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0201278

Parental high dietary arachidonic acid levels modulated the hepatic transcriptome of adult zebrafish (Danio rerio) progeny
Cited by: 14
Author(s): Anne‐Catrin Adam, Kaja H. Skjærven, Paul Whatmore, Mari Moren, Kai Kristoffer Lie
Software Mentions: 1
Published: about 8 years ago

10.3390/ijms21155284

Shade Effects on Peanut Yield Associate with Physiological and Expressional Regulation on Photosynthesis and Sucrose Metabolism
Cited by: 18
Author(s): Tingting Chen, Huajian Zhang, Ruier Zeng, Xinyue Wang, Lüping Huang, Leidi Wang, Xuewen Wang, Lei Zhang
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0152792

Identifying Cancer Subtypes from miRNA-TF-mRNA Regulatory Networks and Expression Data
Cited by: 57
Author(s): Taosheng Xu, Thuc Duy Le, Lin Liu, Rujing Wang, Bingyu Sun, Jiuyong Li
Software Mentions: 1
Published: over 10 years ago

10.3390/toxins13050339

Transcriptional Response in the Digestive Gland of the King Scallop (Pecten maximus) After the Injection of Domoic Acid
Cited by: 5
Author(s): Pablo Ventoso, A. Pazos, Juan Blanco, M. Luz Pérez‐Parallé, Juan Carlos Triviño, José Manuel Otón Sánchez
Software Mentions: 1
Published: over 5 years ago

10.3390/insects11020139

Transcriptomic Analysis of the Brown Planthopper, Nilaparvata lugens, at Different Stages after Metarhizium anisopliae Challenge
Cited by: 5
Author(s): Yifan Peng, Jifeng Tang, Jiaqin Xie
Software Mentions: 1
Published: over 6 years ago

10.3390/antiox10091435

Comparative Transcriptome Analysis of the Expression of Antioxidant and Immunity Genes in the Spleen of a Cyanidin 3-O-Glucoside-Treated Alzheimer’s Mouse Model
Cited by: 11
Author(s): Varun Jaiswal, Miey Park, Hae‐Jeung Lee
Software Mentions: 1
Published: about 5 years ago

10.3390/insects11030171

Transcriptome Analyses of Diaphorina citri Midgut Responses to Candidatus Liberibacter Asiaticus Infection
Cited by: 28
Author(s): Hai‐Zhong Yu, Ning‐Yan Li, Xiang-Dong Zeng, Jian-Chun Song, Yu Xj, Huanan Su, Ci-Xiang Chen, Long Yi, Zhanjun Lu
Software Mentions: 1
Published: over 6 years ago

10.1186/s12864-018-4570-8

Loss of stomach, loss of appetite? Sequencing of the ballan wrasse (Labrus bergylta) genome and intestinal transcriptomic profiling illuminate the evolution of loss of stomach function in fish
Cited by: 35
Author(s): Kai Kristoffer Lie, Ole K. Tørresen, Monica Hongrø Solbakken, Ivar Rønnestad, Ave Tooming‐Klunderud, Alexander Johan Nederbragt, Sissel Jentoft, Øystein Sæle
Software Mentions: 1
Published: over 8 years ago

10.3390/insects12030237

Regulation of Juvenile Hormone on Summer Diapause of Geleruca daurica and Its Pathway Analysis
Cited by: 32
Author(s): Hong-Yue Ma, Yanyan Li, Ling Li, Yao Tan, Bao-Ping Pang
Software Mentions: 1
Published: over 5 years ago

10.3390/microorganisms9030468

The Two-Component System 09 Regulates Pneumococcal Carbohydrate Metabolism and Capsule Expression
Cited by: 7
Author(s): Stephanie Hirschmann, Alejandro Gómez-Mejía, Ulrike Mäder, Julia Karsunke, Dominik Driesch, Manfred Rohde, Susanne Häußler, Gerhard Burchhardt, Sven Hammerschmidt
Software Mentions: 1
Published: over 5 years ago

10.1186/s12964-021-00757-4

Differential RNA packaging into small extracellular vesicles by neurons and astrocytes
Cited by: 10
Author(s): Xuan Luo, Renée Jean‐Toussaint, Ahmet Saçan, Seena K. Ajit
Software Mentions: 1
Published: about 5 years ago

10.3390/insects12080661

Identification and Expression Profile of Chemosensory Genes in the Small Hive Beetle Aethina tumida
Cited by: 8
Author(s): Lixian Wu, Xin Zhai, Liangbin Li, Qiang Li, Fang Liu, Hongxia Zhao
Software Mentions: 1
Published: about 5 years ago

10.3390/insects12080736

Transcriptome Analysis of Hormone-and Cuticle-Related Genes in the Development Process of Deutonymph in Tetranychus urticae
Cited by: 2
Author(s): Gang Li, Xinyao Gu, Shun‐Hua Gui, Jianjun Guo, Tian‐Ci Yi, Dao‐Chao Jin
Software Mentions: 1
Published: about 5 years ago

10.1186/s12915-019-0634-8

Oxygen induces the expression of invasion and stress response genes in the anaerobic salmon parasite Spironucleus salmonicida
Cited by: 9
Author(s): Courtney W. Stairs, Anna Kokla, Ásgeir Ástvaldsson, Jon Jerlström-Hultqvist, Staffan G. Svärd, Thijs J. G. Ettema
Software Mentions: 1
Published: over 7 years ago

10.1038/tp.2016.173

Consistently altered expression of gene sets in postmortem brains of individuals with major psychiatric disorders
Cited by: 56
Author(s): Miranda M. Darby, Robert H. Yolken, Sarven Sabunciyan
Software Mentions: 1
Published: about 10 years ago

10.1186/s40635-021-00406-7

Progranulin signaling in sepsis, community-acquired bacterial pneumonia and COVID-19: a comparative, observational study
Cited by: 6
Author(s): Florian Brandes, Melanie Borrmann, Dominik Buschmann, Agnes S. Meidert, Marlene Reithmair, Markus Langkamp, Lutz Pridzun, Benedikt Kirchner, Jean-Noël Billaud, Nirav M. Amin, Joseph C. Pearson, Matthias Klein, Daniela Hauer, Clarissa Gevargez Zoubalan, Anja Lindemann, Alexander Choukèr, Thomas W. Felbinger, Ortrud K. Steinlein, Michael W. Pfaffl, Inès Kaufmann, Gustav Schelling
Software Mentions: 1
Published: about 5 years ago

Projects: bioconductor: DESeq2

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Science Score: 100/100

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Papers Mentioning DESeq2 9,583