bioconductor: DESeq2 | Projects | Ecosyste.ms: Papers

10.3389/fvets.2020.552251

The Effect of Atopic Dermatitis and Diet on the Skin Transcriptome in Staffordshire Bull Terriers
Cited by: 8
Author(s): Johanna Anturaniemi, Sara Zaldívar‐López, H.F.J. Savelkoul, Kari Elo, Anna Hielm‐Björkman
Software Mentions: 1
Published: almost 6 years ago

10.3390/ijms20133321

Early Response of Radish to Heat Stress by Strand-Specific Transcriptome and miRNA Analysis
Cited by: 25
Author(s): Zifeng Yang, Li Wen, Xiao Dong Su, Pingfei Ge, Yan Zhou, Yuanyuan Hao, Huangying Shu, Chonglun Gao, Shanhan Cheng, Guopeng Zhu, Zhiwei Wang
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-020-80372-4

Parents with periodontitis impact the subgingival colonization of their offspring
Cited by: 11
Author(s): Mabelle Freitas Monteiro, Khaled Altabtbaei, Purnima Kumar, Márcio Zaffalon Casati, Karina Gonzáles Silvério, Enílson Antônio Sallum, Francisco Humberto Nociti-Júnior, Renato Corrêa Viana Casarin
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-020-80454-3

De novo assembled salivary gland transcriptome and expression pattern analyses for Rhipicephalus evertsi evertsi Neuman, 1897 male and female ticks
Cited by: 4
Author(s): Ronel Pienaar, Daniel G. de Klerk, Minique H. de Castro, Jonathan Featherston, Ben J. Mans
Software Mentions: 1
Published: over 5 years ago

10.3389/fvets.2021.650732

Exploring With Transcriptomic Approaches the Underlying Mechanisms of an Essential Oil-Based Phytogenic in the Small Intestine and Liver of Pigs
Cited by: 1
Author(s): Jérémy Le Coz, Suzana Ilic, Silvia Fibi-Smetana, Gerd Schatzmayr, Mathias Zaunschirm, Bertrand Grenier
Software Mentions: 1
Published: about 5 years ago

10.3389/fpls.2016.01905

RNA-seq Profiling Reveals Defense Responses in a Tolerant Potato Cultivar to Stem Infection by Pectobacterium carotovorum ssp. brasiliense
Cited by: 16
Author(s): Stanford Kwenda, Tshepiso V. Motlolometsi, Paul R. J. Birch, Lucy N. Moleleki
Software Mentions: 1
Published: over 9 years ago

10.3389/fpls.2021.690857

Insights Into the Mechanisms Implicated in Pinus pinaster Resistance to Pinewood Nematode
Cited by: 12
Author(s): Inês Modesto, Lieven Sterck, Vicent Arbona, Isabel Carrasquinho, Yves Van de Peer, Celia María Gonzalo Miguel
Software Mentions: 1
Published: over 5 years ago

10.1098/rstb.2019.0194

Temporary adhesion of the proseriate flatworm <i>Minona ileanae</i>
Cited by: 14
Author(s): Robert Pjeta, Julia Wunderer, Philip Bertemes, T. Hofer, Willi Salvenmoser, Birgit Lengerer, Stefan Coassin, Gertraud Erhart, Christian Beisel, Daniel Sobral, Leopold Kremser, Herbert Lindner, Marco Curini‐Galletti, Claus‐Peter Stelzer, Michael W. Hess, Peter Ladurner
Software Mentions: 1
Published: about 7 years ago

10.3389/fpls.2019.00562

GmMYB176 Regulates Multiple Steps in Isoflavonoid Biosynthesis in Soybean
Cited by: 20
Author(s): Arun Kumaran Anguraj Vadivel, Justin B. Renaud, Sateesh Kagale, Sangeeta Dhaubhadel
Software Mentions: 1
Published: over 7 years ago

10.3390/pharmaceutics13091415

Cannabidiol Effectively Promoted Cell Death in Bladder Cancer and the Improved Intravesical Adhesion Drugs Delivery Strategy Could Be Better Used for Treatment
Cited by: 9
Author(s): Shanshan Chen, Changping Deng, Wenyun Zheng, Shihui Li, Yuping Liu, Tong Zhang, Chen Zhang, Yunhui Fu, Hui Miao, Fuzheng Ren, Xiaochun Ma
Software Mentions: 1
Published: about 5 years ago

10.3390/pharmaceutics12100967

Non-Human Primate Blood–Brain Barrier and In Vitro Brain Endothelium: From Transcriptome to the Establishment of a New Model
Cited by: 10
Author(s): Catarina Chaves, Tuan-Minh Do, Céline Cegarra, Valérie Roudières, Sandrine Tolou, Gilbert Thill, Corinne Rocher, Michel Didier, Dominique Lesuisse
Software Mentions: 1
Published: almost 6 years ago

10.3389/fpls.2018.01791

Genome-Wide Transcription During Early Wheat Meiosis Is Independent of Synapsis, Ploidy Level, and the Ph1 Locus
Cited by: 26
Author(s): Azahara C. Martín, Philippa Borrill, Janet Higgins, Abdul Kader Alabdullah, Ricardo H. Ramírez-González, David Swarbreck, Cristóbal Uauy, Peter Shaw, Graham Moore
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41598-021-81276-7

Analyzing the G3BP-like gene family of Arabidopsis thaliana in early turnip mosaic virus infection
Cited by: 15
Author(s): Hendrik Reuper, Khalid Amari, Björn Krenz
Software Mentions: 1
Published: over 5 years ago

10.3389/fnmol.2019.00062

Lmx1b Influences Correct Post-mitotic Coding of Mesodiencephalic Dopaminergic Neurons
Cited by: 4
Author(s): Iris Wever, Pablo Largo‐Barrientos, Elisa J. Hoekstra, Marten P. Smidt
Software Mentions: 1
Published: over 7 years ago

10.1002/bit.27607

High‐resolution three‐dimensional chromatin profiling of the Chinese hamster ovary cell genome
Cited by: 4
Author(s): Steve Bevan, Stefan Schoenfelder, Robert J. Young, Lin Zhang, Simon Andrews, Peter Fraser, Peter M. O’Callaghan
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-021-81866-5

Vertical sleeve gastrectomy induces distinctive transcriptomic responses in liver, fat and muscle
Cited by: 7
Author(s): Chang Ho Ahn, Eun Hye Choi, Hyunjung Lee, Woochan Lee, Jong‐Il Kim, Young Min Cho
Software Mentions: 1
Published: over 5 years ago

10.7717/peerj.6541

Comparative transcriptomics of sympatric species of coral reef fishes (genus: Haemulon)
Cited by: 4
Author(s): Moisés A. Bernal, Groves Dixon, Mikhail V. Matz, Luiz A. Rocha
Software Mentions: 1
Published: over 7 years ago

10.3389/fnmol.2020.602638

Krüppel-Like Factors 9 and 13 Block Axon Growth by Transcriptional Repression of Key Components of the cAMP Signaling Pathway
Cited by: 12
Author(s): José Ávila-Mendoza, Arasakumar Subramani, Robert J. Denver
Software Mentions: 1
Published: almost 6 years ago

10.7717/peerj.6710

Automated analysis of small RNA datasets with RAPID
Cited by: 8
Author(s): Sivarajan Karunanithi, Martín Simón, Marcel H. Schulz
Software Mentions: 1
Published: over 7 years ago

10.7717/peerj.2119

Integrated microRNA, gene expression and transcription factors signature in papillary thyroid cancer with lymph node metastasis
Cited by: 30
Author(s): Nurul Syakima Ab Mutalib, Sri Noraima Othman, Azliana Mohamad Yusof, Shahrun Niza Abdullah Suhaimi, Rohaizak Muhammad, A. Rahman A. Jamal
Software Mentions: 1
Published: over 10 years ago

10.1038/s41598-021-82057-y

A risk progression breast epithelial 3D culture model reveals Cx43/hsa_circ_0077755/miR-182 as a biomarker axis for heightened risk of breast cancer initiation
Cited by: 4
Author(s): Nataly Naser Al Deen, Nadia A. Lanman, Shirisha Chittiboyina, Sophie A. Lelièvre, Rihab Nasr, Farah Nassar, Heinrich zu Dohna, Mounir G. AbouHaidar, Rabih Talhouk
Software Mentions: 1
Published: over 5 years ago

10.3389/fnmol.2019.00284

Transcriptional Profiling of Non-injured Nociceptors After Spinal Cord Injury Reveals Diverse Molecular Changes
Cited by: 10
Author(s): J. Yasko, Isaac L. Moss, Richard E. Mains
Software Mentions: 1
Published: almost 7 years ago

10.3390/ijms20184586

The miRNA–mRNA Networks Involving Abnormal Energy and Hormone Metabolisms Restrict Tillering in a Wheat Mutant dmc
Cited by: 9
Author(s): Junhang An, Hao Niu, Yongjing Ni, Yumei Jiang, Yong-Xing Zheng, Ruishi He, Junchang Li, Zhixin Jiao, Jing Zhang, Huijuan Li, Qiaoyun Li, Jishan Niu
Software Mentions: 1
Published: about 7 years ago

10.3389/fnmol.2020.00131

Antidepressant-Like Effect of Geniposide in Mice Exposed to a Chronic Mild Stress Involves the microRNA-298-5p-Mediated Nox1
Cited by: 11
Author(s): Tianyu Zou, Jielin Zhang, Yongxiu Liu, Yiming Zhang, Kazuo Sugimoto, Cheng Mei
Software Mentions: 1
Published: over 5 years ago

10.3389/fmolb.2021.618869

miR-7b-3p Exerts a Dual Role After Spinal Cord Injury, by Supporting Plasticity and Neuroprotection at Cortical Level
Cited by: 8
Author(s): Matilde Ghibaudi, Marina Boido, Darrell Green, Elena Signorino, Gaia Berto, Soraya Pourshayesteh, Archana Archana, Ferdinando Di Cunto, Tamás Dalmay, Alessandro Vercelli
Software Mentions: 1
Published: over 5 years ago

10.3389/fmolb.2021.640042

A Blood Exosomal miRNA Signature in Acute Respiratory Distress Syndrome
Cited by: 8
Author(s): Gilles Parzibut, Monique Henket, Catherine Moermans, Ingrid Struman, Édouard Louis, Michel Malaise, Renaud Louis, Michel Benoît, Makon‐Sébastien Njock, Julien Guiot
Software Mentions: 1
Published: about 5 years ago

10.3389/fmolb.2020.00055

The Small-Molecule Flunarizine in Spinal Muscular Atrophy Patient Fibroblasts Impacts on the Gemin Components of the SMN Complex and TDP43, an RNA-Binding Protein Relevant to Motor Neuron Diseases
Cited by: 3
Author(s): Delphine Sapaly, Perrine Delers, Jennifer Coridon, Badih Salman, Franck Letourneur, Florent Dumont, Suzie Lefebvre
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms20194908

Abscisic Acid Represses Rice Lamina Joint Inclination by Antagonizing Brassinosteroid Biosynthesis and Signaling
Cited by: 14
Author(s): Qianfeng Li, Jun Lü, Yu Zhou, Fan Wu, Hongning Tong, Jin-Dong Wang, Jiawen Yu, Changquan Zhang, Xiaolei Fan
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-021-82706-2

MEF2C shapes the microtranscriptome during differentiation of skeletal muscles
Cited by: 13
Author(s): Agnieszka Piasecka, Michał Sekrecki, Michał Wojciech Szcześniak, Krzysztof Sobczak
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2020.548737

Cryptosporidium parvum Infection Depletes Butyrate Producer Bacteria in Goat Kid Microbiome
Cited by: 15
Author(s): Mohamed Mammeri, Dasiel Obregón, Aurélie Chevillot, Bruno Polack, Christine Julien, Thomas V. Pollet, Alejandro Cabezas-Cruz, Karim Adjou
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-020-75432-8

Gene expression and epigenetics reveal species-specific mechanisms acting upon common molecular pathways in the evolution of task division in bees
Cited by: 9
Author(s): Natália de Souza Araujo, Maria Cristina Arias
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms20205042

Integration of Transcriptomics and Metabolomics for Pepper (Capsicum annuum L.) in Response to Heat Stress
Cited by: 41
Author(s): Jing Wang, Junheng Lv, Zhoubin Liu, Yuhua Liu, Jingshuang Song, Yanqing Ma, Lijun Ou, Xilu Zhang, Chengliang Liang, Fei Wang, Niran Juntawong, Jiao Chen, Wenchao Chen, Xuexiao Zou
Software Mentions: 1
Published: almost 7 years ago

10.3390/ijms20205176

Current Smoking is Associated with Decreased Expression of miR-335-5p in Parenchymal Lung Fibroblasts
Cited by: 12
Author(s): Jennie Ong, Anke van den Berg, Alen Faiz, Ilse M. Boudewijn, Wim Timens, Cornelis J Vermeulen, Brian G. Oliver, Klaas Kok, Martijn Terpstra, Maarten van den Berge, Corry‐Anke Brandsma, Joost Kluiver
Software Mentions: 1
Published: almost 7 years ago

10.1002/bit.27274

Overexpression of transcription factor Foxa1 and target genes remediate therapeutic protein production bottlenecks in Chinese hamster ovary cells
Cited by: 25
Author(s): Audrey Berger, Valérie Le Fourn, Jacqueline Masternak, Alexandre Regamey, Iris Bodenmann, Pierre‐Alain Girod, Nicolas Mermod
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms20225726

Depletion of KNL2 Results in Altered Expression of Genes Involved in Regulation of the Cell Cycle, Transcription, and Development in Arabidopsis
Cited by: 6
Author(s): Anastassia Boudichevskaia, Andreas Houben, Anne Fiebig, Klára Procházková, Aleš Pečinka, Inna Lermontová
Software Mentions: 1
Published: almost 7 years ago

10.3389/fmicb.2021.695572

Functional Characterization of the Cell Division Gene Cluster of the Wall-less Bacterium Mycoplasma genitalium
Cited by: 11
Author(s): Carlos Martínez-Torró, Sergi Torres-Puig, Marina Marcos-Silva, Marta Huguet-Ramón, Carmen Muñoz-Navarro, María Lluch‐Senar, Luís Serrano, Enrique Querol, Jaume Piñol, Óscar Q. Pich
Software Mentions: 1
Published: about 5 years ago

10.3389/fmicb.2018.00129

1-((2,4-Dichlorophenethyl)Amino)-3-Phenoxypropan-2-ol Kills Pseudomonas aeruginosa through Extensive Membrane Damage
Cited by: 9
Author(s): Valerie Defraine, Veerle Liebens, Evelien Loos, Toon Swings, Bram Weytjens, Carolina Bustos Fierro, Kathleen Marchal, Liam K. R. Sharkey, Alex J. O’Neill, Romuald Corbau, Arnaud Marchand, Patrick Chaltin, Maarten Fauvart, Jan Michiels
Software Mentions: 1
Published: over 8 years ago

10.1042/BSR20200187

KRT84 is a potential tumor suppressor and good prognosis signature of oral squamous cell carcinoma
Cited by: 2
Author(s): Yi Liu, Ronghua Li, Gang Ren
Software Mentions: 1
Published: over 6 years ago

10.7717/peerj.8624

Identification and validation of potential key long noncoding RNAs in sorafenib-resistant hepatocellular carcinoma cells
Cited by: 2
Author(s): Manya Wu, Xiaofeng Shen, Yanping Tang, Caifu Zhou, Haixia Li, Xi Luo
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms20225634

Identification of MicroRNAs That Respond to Soybean Cyst Nematode Infection in Early Stages in Resistant and Susceptible Soybean Cultivars
Cited by: 15
Author(s): Piao Lei, Bing Han, Yuanyuan Wang, Xiaofeng Zhu, Yue Xuan, Xiaoyu Liu, Haiyan Fan, Lijie Chen, Yuxi Duan
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-021-83267-0

Genome-wide transcriptome reveals mechanisms underlying Rlm1-mediated blackleg resistance on canola
Cited by: 3
Author(s): Chun Zhai, Xunjia Liu, Tao Song, Fengqun Yu, Gary Peng
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms20225720

A Gene Signature of Survival Prediction for Kidney Renal Cell Carcinoma by Multi-Omic Data Analysis
Cited by: 30
Author(s): Fuyan Hu, Wenying Zeng, Xiaoping Li
Software Mentions: 1
Published: almost 7 years ago

10.1042/BSR20190540

Regulatory networks of circRNAs related to transcription factors in <i>Populus euphratica</i> Oliv. heteromorphic leaves
Cited by: 7
Author(s): Lianghong Bao, Shaowei Qin, Cai-Lin Li, Zhongzhong Guo, Lei Zhao
Software Mentions: 1
Published: almost 7 years ago

10.1042/BSR20191028

miR-484 is associated with disease recurrence and promotes migration in prostate cancer
Cited by: 10
Author(s): Daniel Lee, Wei Tang, Tiffany H. Dorsey, Stefan Ambs
Software Mentions: 1
Published: over 6 years ago

10.3389/fmicb.2021.710845

The Molecular Mechanism of Hemocyte Immune Response in Marsupenaeus japonicus Infected With Decapod Iridescent Virus 1
Cited by: 15
Author(s): Zihao He, Jichen Zhao, Xieyan Chen, Minze Liao, Yuan Xue, Jianing Zhou, Haozhen Chen, Guoliang Chen, Shuang Zhang, Chengbo Sun
Software Mentions: 1
Published: about 5 years ago

10.3389/fmicb.2019.01517

miRNA-Gene Regulatory Network in Gnotobiotic Mice Stimulated by Dysbiotic Gut Microbiota Transplanted From a Genetically Obese Child
Cited by: 8
Author(s): Liman Deng, Ruirui Wang, Hui Li, Chenhong Zhang, Liping Zhao, Menghui Zhang
Software Mentions: 1
Published: about 7 years ago

10.3389/fmicb.2021.632454

A Continuous Battle for Host-Derived Glycans Between a Mucus Specialist and a Glycan Generalist in vitro and in vivo
Cited by: 13
Author(s): Ioannis Kostopoulos, Steven Aalvink, Petia Kovatcheva‐Datchary, Bart Nijsse, Fredrik Bäckhed, Jan Knol, Willem M. de Vos, Clara Belzer
Software Mentions: 1
Published: about 5 years ago

10.3389/fmicb.2021.649213

Trained Immunity in Anopheles gambiae: Antibacterial Immunity Is Enhanced by Priming via Sugar Meal Supplemented With a Single Gut Symbiotic Bacterial Strain
Cited by: 8
Author(s): Aditi Kulkarni, Ashmita Pandey, Patrick J. Trainor, Samantha M. Carlisle, Jainder Singh Chhilar, Wanqin Yu, Alex S. Moon, Jianchu Xu
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2018.01795

Genomic and Functional Characterization of Environmental Strains of SDS-Degrading Pseudomonas spp., Providing a Source of New Sulfatases
Cited by: 14
Author(s): Ewa M. Furmanczyk, Leszek Lipiński, Andrzej Dziembowski, Adam Sobczak
Software Mentions: 1
Published: about 8 years ago

10.3389/fmicb.2020.02022

Amphotericin B Specifically Induces the Two-Component System LnrJK: Development of a Novel Whole-Cell Biosensor for the Detection of Amphotericin-Like Polyenes
Cited by: 11
Author(s): Ainhoa Revilla-Guarinos, Franziska Dürr, Philipp F. Popp, Michaela Döring, Thorsten Mascher
Software Mentions: 1
Published: about 6 years ago

10.1186/s13024-021-00453-4

Modulating innate immune activation states impacts the efficacy of specific Aβ immunotherapy
Cited by: 3
Author(s): Yona Levites, Cory C. Funk, Xue Wang, Paramita Chakrabarty, Karen N. McFarland, Baxter Bramblett, Veronica O’Neal, Xufei Liu, Thomas B. Ladd, Max Robinson, Mariet Allen, Minerva M. Carrasquillo, Dennis W. Dickson, Pedro Cruz, Danny Ryu, Hong Dong Li, Nathan D. Price, Nilüfer Ertekin-Taner, Todd E. Golde
Software Mentions: 1
Published: over 5 years ago

10.1042/BSR20194041

RNA-sequencing and bioinformatics analysis of long noncoding RNAs and mRNAs in the asthenozoospermia
Cited by: 14
Author(s): Hui Lü, Dongchuan Xu, Ping Wang, Wenye Sun, Xinhuai Xue, Yuxin Hu, Chunli Xie, Yanlin Ma
Software Mentions: 1
Published: about 6 years ago

10.3389/fmicb.2020.536865

Quorum Sensing System Affects the Plant Growth Promotion Traits of Serratia fonticola GS2
Cited by: 14
Author(s): Byung Kwon Jung, Jerald Conrad Ibal, Huy Quang Pham, Min‐Chul Kim, Gun-Seok Park, Sung-Jun Hong, Hyung Woo Jo, Chang Eon Park, Seung-Dae Choi, Young Hun Jung, Setu Bazie Tagele, Jae‐Ho Shin
Software Mentions: 1
Published: almost 6 years ago

10.3390/ijms20246220

Translational Regulation of Pmt1 and Pmt2 by Bfr1 Affects Unfolded Protein O-Mannosylation
Cited by: 5
Author(s): Joan Castells-Ballester, Natalie Rinis, Ilgin Kotan, Lihi Gal, Daniela Bausewein, Ilia Kats, Ewa Zatorska, Günter Krämer, Bernd Bukau, Maya Schuldiner
Software Mentions: 1
Published: almost 7 years ago

10.3389/fmicb.2018.00366

The Response of a 16S Ribosomal RNA Gene Fragment Amplified Community to Lead, Zinc, and Copper Pollution in a Shanghai Field Trial
Cited by: 68
Author(s): Shumeng Kou, Gilles Vincent, Emmanuel González, Frédéric E. Pitre, Michel Labrecque, Nicholas J. B. Brereton
Software Mentions: 1
Published: over 8 years ago

10.3389/fmicb.2021.664598

Genomic and Transcriptomic Investigation of the Physiological Response of the Methylotroph Bacillus methanolicus to 5-Aminovalerate
Cited by: 3
Author(s): Carsten Haupka, Luciana Fernandes de Brito, Tobias Busche, Daniel Wibberg, Volker F. Wendisch
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2019.02074

The Transcription Unit Architecture of Streptomyces lividans TK24
Cited by: 23
Author(s): Yong Jae Lee, Namil Lee, Yu‐Jin Jeong, Soonkyu Hwang, Woori Kim, Suhyung Cho, Bernhard Ø. Palsson, Byung-Kwan Cho
Software Mentions: 1
Published: about 7 years ago

10.1186/s13024-019-0322-8

Hippocampal stem cells promotes synaptic resistance to the dysfunctional impact of amyloid beta oligomers via secreted exosomes
Cited by: 33
Author(s): Maria Adelaide Micci, Balaji Krishnan, Elizabeth A. Bishop, Wen Ru Zhang, Jutatip Guptarak, Ashley Grant, Olga Zolochevska, Batbayar Tumurbaatar, Whitney Franklin, Claudia Mariño, Steven G. Widen, Arjun Luthra, Steven G. Kernie, Giulio Taglialatela
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-021-84809-2

Human milk extracellular vesicle miRNA expression and associations with maternal characteristics in a population-based cohort from the Faroe Islands
Cited by: 28
Author(s): Allison Kupsco, Diddier Prada, Damaskini Valvi, Lisa Hu, Maria Skaalum Petersen, Brent A. Coull, Philippe Grandjean, Andrea A. Baccarelli
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2020.00744

Genomic and Transcriptomic Study for Screening Genes Involved in the Limonene Biotransformation of Penicillium digitatum DSM 62840
Cited by: 10
Author(s): Lulu Zhang, Wen Huang, Yingying Zhang, Gang Fan, Jin He, Jianmin Ren, Zhi Li, Xiao Li, Siyi Pan
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-021-85560-4

Germline masculinization by Phf7 in D. melanogaster requires its evolutionarily novel C-terminus and the HP1-family protein HP1D3csd
Cited by: 3
Author(s): Shu Yuan Yang
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2016.00175

Understanding the Role of the Master Regulator XYR1 in Trichoderma reesei by Global Transcriptional Analysis
Cited by: 60
Author(s): Lílian dos Santos Castro, Renato Graciano de Paula, Amanda Cristina Campos Antoniêto, Gabriela Félix Persinoti, Rafael Silva‐Rocha, Roberto do Nascimento Silva
Software Mentions: 1
Published: over 10 years ago

10.3389/fimmu.2020.580547

Single-Stranded Oligonucleotide-Mediated Inhibition of Respiratory Syncytial Virus Infection
Cited by: 7
Author(s): Sandra Pålsson, Aleksandra Dondalska, Joseph Bergenstråhle, Caroline Rolfes, Albin Björk, Laura Sedano, Ultan F. Power, Marie‐Anne Rameix‐Welti, Joakim Lundeberg, Marie Wahren‐Herlenius, Peter Mastrangelo, Jean-François Éléouët, Ronan Le Goffic, Marie Galloux, Anna-Lena Spetz
Software Mentions: 1
Published: almost 6 years ago

10.3390/ijms20246341

Genetic and Physiological Dissection of Photosynthesis in Barley Exposed to Drought Stress
Cited by: 26
Author(s): Agata Daszkowska‐Golec, Anna Collin, Krzysztof Sitko, Agnieszka Janiak, Hazem M. Kalaji, Iwona Szarejko
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-021-84501-5

Prognostic plasma exosomal microRNA biomarkers in patients with substance use disorders presenting comorbid with anxiety and depression
Cited by: 17
Author(s): Fengrong Chen, Lei Zou, Yicong Dai, Jiaxue Sun, Cheng Chen, Yongjin Zhang, Qingyan Peng, Zunyue Zhang, Zhenrong Xie, Hongjin Wu, Wen Tian, Xu Yu, Juehua Yu, Kunhua Wang
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-85707-3

A postbiotic from Aspergillus oryzae attenuates the impact of heat stress in ectothermic and endothermic organisms
Cited by: 12
Author(s): J.D. Kaufman, Yvonne Seidler, Hannah R. Bailey, Lynsey K. Whitacre, F. Bargo, Kai Lüersen, Gerald Rimbach, Gina M. Pighetti, Ignacio R. Ipharraguerre, A.G. Ríus
Software Mentions: 1
Published: over 5 years ago

10.3389/fimmu.2020.601494

Transplacental Innate Immune Training via Maternal Microbial Exposure: Role of XBP1-ERN1 Axis in Dendritic Cell Precursor Programming
Cited by: 16
Author(s): Kyle T Mincham, Anya C. Jones, Marie Bodinier, Naomi M. Scott, Jean-François Lauzon-Joset, Philip A. Stumbles, Anthony Bosco, Patrick G. Holt, Deborah H. Strickland
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-021-85930-y

Advanced bioinformatic analysis and pathway prediction of NSCLC cells upon cisplatin resistance
Cited by: 6
Author(s): A K M Nawshad Hossian, Fatema Tuz Zahra, Sagun Poudel, Camille F. Abshire, Paula Polk, Jone Garai, Jovanny Zabaleta, Constantinos M. Mikelis, George Mattheolabakis
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms20246206

Assessment of the Effects of Bisphenol A on Dopamine Synthesis and Blood Vessels in the Goldfish Brain
Cited by: 9
Author(s): Qing Wang, Fangmei Lin, Qi He, Xiaochun Liu, Shiqiang Xiao, Li Zheng, Huirong Yang, Haifeng Zhao
Software Mentions: 1
Published: almost 7 years ago

10.3389/fimmu.2018.01845

Transcriptomic Characterization of a Chicken Embryo Model Infected With Duck Hepatitis A Virus Type 1
Cited by: 16
Author(s): Jinyan Xie, Qiurui Zeng, Mingshu Wang, Xumin Ou, Yunchao Ma, Anchun Cheng, Xinxin Zhao, Mafeng Liu, Dekang Zhu, Shun Chen, Renyong Jia, Qiao Yang, Ying Wu, Shaqiu Zhang, Yunya Liu, Yanling Yu, Ling Zhang, Xiaoyue Chen
Software Mentions: 1
Published: about 8 years ago

10.3389/fimmu.2019.00222

Expression of the Phosphatase Ppef2 Controls Survival and Function of CD8+ Dendritic Cells
Cited by: 3
Author(s): Markus Zwick, Thomas Ulas, Yi-Li Cho, Christine Ried, Leonie Grosse, C. Robson Simon, Caroline Bernhard, Dirk H. Busch, Joachim L. Schultze, Veit R. Buchholz, Susanne Stutte, Thomas Brocker
Software Mentions: 1
Published: over 7 years ago

10.3389/fimmu.2021.650331

Mast Cell and Eosinophil Activation Are Associated With COVID-19 and TLR-Mediated Viral Inflammation: Implications for an Anti-Siglec-8 Antibody
Cited by: 66
Author(s): Simon Gebremeskel, Julia Schanin, Krysta M. Coyle, Melina Butuci, Thuy T. Luu, Emily C. Brock, Xu Ao-ao, Alan Wong, John Leung, Wouter Korver, Ryan D. Morin, Robert P. Schleimer, Bruce S. Bochner, Brad Youngblood
Software Mentions: 1
Published: over 5 years ago

10.3389/fimmu.2020.536442

TNFAIP3 Plays a Role in Aging of the Hematopoietic System
Cited by: 11
Author(s): Molly A. Smith, Ashley E. Culver‐Cochran, Emmalee R. Adelman, Garrett W. Rhyasen, Averil Ma, María E. Figueroa, Daniel T. Starczynowski
Software Mentions: 1
Published: almost 6 years ago

10.3390/ijms20246114

Deciphering Genetic Architecture of Adventitious Root and Related Shoot Traits in Populus Using QTL Mapping and RNA-Seq Data
Cited by: 24
Author(s): Peng Sun, Huixia Jia, Yahong Zhang, Jianbo Li, Mengzhu Lu, Jianjun Hu
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-021-86664-7

Differential reprogramming of breast cancer subtypes in 3D cultures and implications for sensitivity to targeted therapy
Cited by: 20
Author(s): Esmee Koedoot, Liesanne Wolters, Marcel Smid, Peter Stoilov, Gerhard A. Burger, Bram Herpers, Kuan Yan, Leo Price, John W.M. Martens, Sylvia E. Le Dévédec, Bob van de Water
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-86646-9

DOT1L inhibitors block abnormal self-renewal induced by cohesin loss
Cited by: 6
Author(s): Katelyn E. Heimbruch, Joseph B. Fisher, Cary Stelloh, Emily Phillips, Michael Reimer, Adam J. Wargolet, Alison E. Meyer, Kirthi Pulakanti, Aaron D. Viny, Jessica J. Loppnow, Ross L. Levine, John Anto Pulikkan, Nan Zhu, Sridhar Rao
Software Mentions: 1
Published: over 5 years ago

10.3389/fimmu.2019.01175

Evaluation of a Recombinant Flavobacterium columnare DnaK Protein Vaccine as a Means of Protection Against Columnaris Disease in Channel Catfish (Ictalurus punctatus)
Cited by: 16
Author(s): Miles D. Lange, Jason Abernathy, Bradley D. Farmer
Software Mentions: 1
Published: over 7 years ago

10.3389/fimmu.2020.01311

“Small” Intestinal Immunopathology Plays a “Big” Role in Lethal Cytokine Release Syndrome, and Its Modulation by Interferon-γ, IL-17A, and a Janus Kinase Inhibitor
Cited by: 9
Author(s): Shiv D. Kale, Brittney N. Mehrkens, Molly M. Stegman, Bridget Kastelberg, Henry Carnes, Rachel J. McNeill, Amy Rizzo, Saikumar Karyala, Sheryl Coutermarsh-Ott, Jackie A. Fretz, Ying Sun, Jonathan L. Koff, Govindarajan Rajagopalan
Software Mentions: 1
Published: about 6 years ago

10.18632/oncotarget.27575

Distinct pattern of one-carbon metabolism, a nutrient-sensitive pathway, in invasive breast cancer: A metabolomic study
Cited by: 2
Author(s): Jailma Rodrigues dos Santos, Dan Linetzky Waitzberg, Ismael Dale Cotrim Guerreiro da Silva, Tharcísio Citrângulo Tortelli, Luciana Rodrigues Carvalho Barros, Gisele André Baptista Canuto, Andréa Tedesco Faccio, Lydia F. Yamaguchi, Massuo Jorge Kato, Marina Franco Maggi Tavares, Ana Cristina Utrillas Martínez, Ângela Flávia Logullo, Raquel Susana Torrinhas, Graziela Rosa Ravacci
Software Mentions: 1
Published: over 6 years ago

10.1186/s13024-018-0297-x

Development and validation of a simplified method to generate human microglia from pluripotent stem cells
Cited by: 217
Author(s): Amanda McQuade, Morgan A. Coburn, Christina H. Tu, Jonathan Hasselmann, Hayk Davtyan, Mathew Blurton‐Jones
Software Mentions: 1
Published: almost 8 years ago

10.1186/s13024-020-00360-0

Parkinson’s disease-related Leucine-rich repeat kinase 2 modulates nuclear morphology and genomic stability in striatal projection neurons during aging
Cited by: 21
Author(s): Xi Chen, Chuanmiao Xie, Wen Tian, Lixin Sun, Zheng Wang, Sarah Hawes, Lisa Chang, Justin Kung, Jinhui Ding, Shengdi Chen, Weidong Le, Huaibin Cai
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-021-87423-4

Combination of RNA-Seq transcriptomics and iTRAQ proteomics reveal the mechanism involved in fresh-cut yam yellowing
Cited by: 6
Author(s): Shuang Guo, Dan Wang, Yue Ma, Yan Zhang, Xiaoyan Zhao
Software Mentions: 1
Published: over 5 years ago

Projects: bioconductor: DESeq2

Enhanced Analysis

Science Score: 100/100

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Papers Mentioning DESeq2 9,583