bioconductor: DESeq2 | Projects | Ecosyste.ms: Papers

10.3389/fcell.2021.695311

Distinct and Coordinated Regulation of Small Non-coding RNAs by E2f1 and p53 During Drosophila Development and in Response to DNA Damage
Cited by: 3
Author(s): Dong Liu, Ying Ge, Ze Zhao, Rui Zhu, Xiang Wang, Xiaolin Bi
Software Mentions: 1
Published: over 5 years ago

10.1016/j.devcel.2019.04.033

Stem Cell Proliferation Is Kept in Check by the Chromatin Regulators Kismet/CHD7/CHD8 and Trr/MLL3/4
Cited by: 21
Author(s): Louis Gervais, Marius van den Beek, Manon Josserand, Jeremy Sallé, Marine Stefanutti, Carolina N. Perdigoto, Patricia Skorski, Khalil Mazouni, Owen J. Marshall, Andrea H. Brand, François Schweisguth, Allison J. Bardin
Software Mentions: 1
Published: over 7 years ago

10.1016/j.devcel.2018.09.023

Cell Cycle Heterogeneity Can Generate Robust Cell Type Proportioning
Cited by: 26
Author(s): Nicole Gruenheit, Katie Parkinson, Christopher A. Brimson, Satoshi Kuwana, Edward J. Johnson, Koki Nagayama, Jack Llewellyn, William Salvidge, Balint Stewart, Thomas Keller, Wouter van Zon, Simon L. Cotter, Christopher Thompson
Software Mentions: 1
Published: about 8 years ago

10.1084/jem.20190301

The adjuvant GLA-SE promotes human Tfh cell expansion and emergence of public TCRβ clonotypes
Cited by: 70
Author(s): Danika L. Hill, Wim Pierson, Daniel J. Bolland, Catherine Mkindi, Edward J Carr, Jiong Wang, Sophie Houard, Steven Wingett, R Audran, Elizabeth Wallin, Said Jongo, Kassim Kamaka, Martin S. Zand, François Spertini, Claudia Daubenberger, Anne E. Corcoran, Michelle A. Linterman
Software Mentions: 1
Published: over 7 years ago

10.1530/REP-21-0209

Effect of in vitro growth on mouse oocyte competency, mitochondria and transcriptome
Cited by: 6
Author(s): Tomoya Takashima, Tsubasa Fujimaru, Yayoi Obata
Software Mentions: 1
Published: about 5 years ago

10.7717/peerj.3315

Alien vs. predator: bacterial challenge alters coral microbiomes unless controlled byHalobacteriovoraxpredators
Cited by: 59
Author(s): Rory M. Welsh, Stephanie M. Rosales, Jesse Zaneveld, Jérôme P. Payet, Ryan McMinds, Steven L Hubbs, Rebecca L. Vega Thurber
Software Mentions: 1
Published: over 9 years ago

10.1155/2021/8890176

Transcriptomic Analyses Reveal Gene Expression Profiles and Networks in Nasopharyngeal Carcinoma
Cited by: 3
Author(s): Yuwen Zhou, Weiqiang Yang, Xueshuang Mei, Hongyi Hu
Software Mentions: 1
Published: almost 6 years ago

10.7717/peerj.3408

Comparative transcriptome analysis of isonuclear-alloplasmic lines unmask key transcription factor genes and metabolic pathways involved in sterility of maize CMS-C
Cited by: 13
Author(s): Chuan Li, Zhigang Zhao, Yongming Liu, Bing Liu, Shuxian Guan, Hai Long, Jing Wang, Yanli Lu, Mengji Cao
Software Mentions: 1
Published: over 9 years ago

10.7717/peerj.8797

Pan-cancer systematic identification of lncRNAs associated with cancer prognosis
Cited by: 3
Author(s): Matthew Ung, Evelien Schaafsma, Daniel Mattox, George L. Wang, Chao Cheng
Software Mentions: 1
Published: over 6 years ago

10.3389/fcell.2021.605875

Mdfi Promotes C2C12 Cell Differentiation and Positively Modulates Fast-to-Slow-Twitch Muscle Fiber Transformation
Cited by: 14
Author(s): Bo Huang, Yiren Jiao, Yifan Zhu, Zuocheng Ning, Zijian Ye, Qing X. Li, Chen Hu, Chong Wang
Software Mentions: 1
Published: almost 6 years ago

10.7717/peerj.11081

RNA-seq analysis of antibacterial mechanism of Cinnamomum camphora essential oil against Escherichia coli
Cited by: 5
Author(s): Yutian Yu, Jing Dong, Yanlu Wang, Xiaohua Gong
Software Mentions: 1
Published: over 5 years ago

10.7717/peerj.6845

Exploring the transcriptome ofluxI−andΔainSmutants and the impact of N-3-oxo-hexanoyl-L- and N-3-hydroxy-decanoyl-L-homoserine lactones on biofilm formation inAliivibrio salmonicida
Cited by: 7
Author(s): Miriam Khider, Hilde Hansen, Erik Hjerde, Jostein Johansen, Nils Peder Willassen
Software Mentions: 1
Published: over 7 years ago

10.18632/oncotarget.13079

Acid ceramidase is upregulated in AML and represents a novel therapeutic target
Cited by: 65
Author(s): Su‐Fern Tan, Xin Liu, Todd E. Fox, Brian M. Barth, Arti Sharma, Stephen D. Turner, Andy Awwad, Alden Dewey, Kenichiro Doi, Barbara Spitzer, Mithun Vinod Shah, Samy A.F. Morad, Dhimant Desai, Shantu Amin, Junjia Zhu, Jason Liao, Jong K. Yun, Mark Kester, David F. Claxton, Hong Gang Wang, Myles C. Cabot, Edward H. Schuchman, Ross L. Levine, David J. Feith
Software Mentions: 1
Published: about 10 years ago

10.7717/peerj.5011

Comprehensive circular RNA expression profile in radiation-treated HeLa cells and analysis of radioresistance-related circRNAs
Cited by: 48
Author(s): Duo Yu, Yunfeng Li, Zhi‐Hui Ming, Hongyong Wang, Zuo-Ren Dong, Ling Qiu, Zhihui Wang
Software Mentions: 1
Published: over 8 years ago

10.1084/jem.20180019

Tissue-resident macrophages in the intestine are long lived and defined by Tim-4 and CD4 expression
Cited by: 241
Author(s): Tovah N. Shaw, Stephanie Houston, Kelly Wemyss, Hayley Bridgeman, Thomas Barbera, Tamsin Zangerle-Murray, Sheila Patrick, Amanda J L Ridley, Ping Wang, Samira Tamoutounour, Judith E. Allen, Joanne E. Konkel, John Grainger
Software Mentions: 1
Published: over 8 years ago

10.7717/peerj.10593

Transcriptome analysis reveals liver metabolism programming in kids from nutritional restricted goats during mid-gestation
Cited by: 5
Author(s): Chao Yang, Xiaoling Zhou, Hong Yang, Kefyalew Gebeyew, Qiongxian Yan, Chunfang Zhou, Zhixiong He, Zhiliang Tan
Software Mentions: 1
Published: almost 6 years ago

10.1186/s13293-021-00387-y

Sexual dimorphism of monocyte transcriptome in individuals with chronic low-grade inflammation
Cited by: 10
Author(s): Jisun So, Albert Tai, Alice H. Lichtenstein, Dayong Wu, Stefania Lamon‐Fava
Software Mentions: 1
Published: over 5 years ago

10.3389/fcell.2021.634056

Genomic and Transcriptomic Analyses Reveals ZNF124 as a Critical Regulator in Highly Aggressive Medulloblastomas
Cited by: 8
Author(s): Zaili Luo, Xinran Dong, Jianzhong Yu, Yong Xia, Kalen Berry, Rohit Rao, Lei Xu, Ping Xue, Tong Chen, Yifeng Lin, Jiyang Yu, Guoying Huang, Hao Li, Wenhao Zhou, Qi Lu
Software Mentions: 1
Published: over 5 years ago

10.3390/cancers13030480

Integrin α3β1 Promotes Invasive and Metastatic Properties of Breast Cancer Cells through Induction of the Brn-2 Transcription Factor
Cited by: 10
Author(s): Rakshitha Pandulal Miskin, Janine Warren, Abibatou Ndoye, Lei Wu, C. Michael DiPersio
Software Mentions: 1
Published: almost 6 years ago

10.3390/cancers12082285

YB-1 Knockdown Inhibits the Proliferation of Mesothelioma Cells through Multiple Mechanisms
Cited by: 9
Author(s): Thomas G. Johnson, Karin Schelch, Kaitao Lai, Kamila A. Marzec, Marina Kennerson, Michael Grusch, Glen Reid, Andrew Burgess
Software Mentions: 1
Published: over 6 years ago

10.1186/s12931-020-1295-4

Expression of SMARCD1 interacts with age in association with asthma control on inhaled corticosteroid therapy
Cited by: 4
Author(s): Michael J. McGeachie, Joanne E. Sordillo, Amber Dahlin, Alberta L. Wang, Sharon M. Lutz, Kelan G. Tantisira, Ronald Allan M Panganiban, Quan Lu, Satria Sajuthi, Cydney Urbanek, Rachel S. Kelly, Benjamin Saef, Celeste Eng, Sam S. Oh, Alvin T. Kho, Damien C. Croteau‐Chonka, Scott T. Weiss, Benjamin A. Raby, Angel C. Y. Mak, José Rodríguez‐Santana, Esteban G. Burchard, Max A. Seibold, Ann Chen Wu
Software Mentions: 1
Published: almost 7 years ago

10.7717/peerj.2819

Brain transcriptomes of harbor seals demonstrate gene expression patterns of animals undergoing a metabolic disease and a viral infection
Cited by: 5
Author(s): Stephanie M. Rosales, Rebecca L. Vega Thurber
Software Mentions: 1
Published: almost 10 years ago

10.1186/s12931-020-01402-3

T2 and T17 cytokines alter the cargo and function of airway epithelium-derived extracellular vesicles
Cited by: 12
Author(s): Elisabeth Ax, Zala Jevnikar, Aleksander Cvjetkovic, Carina Malmhäll, Henric Olsson, Madeleine Rådinger, Cecilia Lässer
Software Mentions: 1
Published: over 6 years ago

10.1186/s12931-020-01522-w

Dexamethasone rescues TGF-β1-mediated β2-adrenergic receptor dysfunction and attenuates phosphodiesterase 4D expression in human airway smooth muscle cells
Cited by: 7
Author(s): Elena Chung, Christie A. Ojiaku, Gaoyuan Cao, Vishal Parikh, B.T. Deeney, Shengjie Xu, Serena Wang, Reynold A. Panettieri, Cynthia Koziol‐White
Software Mentions: 1
Published: about 6 years ago

10.1186/s12931-021-01645-8

Qi-Long-Tian formula extract alleviates symptoms of acute high-altitude diseases via suppressing the inflammation responses in rat
Cited by: 7
Author(s): Xing Fu, Chunyan Yang, Bing Chen, Kexing Zeng, Siyuan Chen, Fujin Yi
Software Mentions: 1
Published: almost 6 years ago

10.3389/fcell.2020.00669

Further Evidence That MicroRNAs Can Play a Role in Hemophilia A Disease Manifestation: F8 Gene Downregulation by miR-19b-3p and miR-186-5p
Cited by: 6
Author(s): Katarzyna I. Jankowska, Joseph R. McGill, Behnaz Pezeshkpoor, Johannes Oldenburg, Zuben E. Sauna, Chintamani D. Atreya
Software Mentions: 1
Published: over 6 years ago

10.1084/jem.20200164

IL-33 promotes anemia during chronic inflammation by inhibiting differentiation of erythroid progenitors
Cited by: 21
Author(s): James Swann, Lada A. Koneva, Daniel Regan-Komito, Stephen N. Sansom, Fiona Powrie, Thibault Griseri
Software Mentions: 1
Published: over 6 years ago

10.1155/2019/2365416

Identification of mRNAs Related to Tibial Cartilage Development of Yorkshire Piglets
Cited by: 1
Author(s): Shuaifei Feng, Xiaoyong Du, Chao Wang, Dengdeng Ye, Guanjun Ma, Shuhong Zhao, Haiyan Wang, Xiangdong Liu
Software Mentions: 1
Published: about 7 years ago

10.1084/jem.20191393

Critical requirement for BCR, BAFF, and BAFFR in memory B cell survival
Cited by: 26
Author(s): Jennifer Müller-Winkler, Richard Mitter, J. Rappe, Lesley Vanes, Edina Schweighoffer, Hamid Mohammadi, Andreas Wack, Victor L. J. Tybulewicz
Software Mentions: 1
Published: about 6 years ago

10.18632/oncotarget.13761

Frequent silencing of the candidate tumor suppressor TRIM58 by promoter methylation in early-stage lung adenocarcinoma
Cited by: 40
Author(s): Koichiro Kajiura, Kiyoshi Masuda, Takuya Naruto, Tomohiro Kohmoto, Miki Watabnabe, Masaya Tsuboi, Hiromitsu Takizawa, Kazuya Kondo, Akira Tangoku, Issei Imoto
Software Mentions: 1
Published: almost 10 years ago

10.1186/s12977-016-0275-8

Innate immune defects in HIV permissive cell lines
Cited by: 17
Author(s): Antonio Rausell, Miguel Muñoz, Raquel Martínez, Thierry Roger, Amalio Telenti, Angela Ciuffi
Software Mentions: 1
Published: over 10 years ago

10.1186/s12977-018-0436-z

Proceedings of the Frontiers in Retrovirology Conference 2018
Cited by: 0
Author(s):
Software Mentions: 1
Published: about 8 years ago

10.1155/2020/5762932

Transcriptome Analysis Reveals the Negative Effect of 16 T High Static Magnetic Field on Osteoclastogenesis of RAW264.7 Cells
Cited by: 3
Author(s): Ting Huyan, Hourong Peng, Suna Cai, Qi Li, Di Dong, Zhouqi Yang, Peng Shang
Software Mentions: 1
Published: over 6 years ago

10.1186/s12977-020-00533-1

Dynamic nanopore long-read sequencing analysis of HIV-1 splicing events during the early steps of infection
Cited by: 18
Author(s): Nam Nguyen Quang, Sophie Goudey, Emmanuel Ségéral, Ammara Mohammad, Sophie Lemoine, Corinne Blugeon, Margaux Versapuech, Jean-Christophe Paillart, Clarisse Berlioz‐Torrent, Stéphane Emiliani, Sarah Gallois-Montbrun
Software Mentions: 1
Published: about 6 years ago

10.1084/jem.20200504

Efficient homing of antibody-secreting cells to the bone marrow requires RNA-binding protein ZFP36L1
Cited by: 15
Author(s): Alexander Saveliev, Sarah E. Bell, Martin Turner
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12284-020-00436-x

RGG1, Involved in the Cytokinin Regulatory Pathway, Controls Grain Size in Rice
Cited by: 21
Author(s): Yajun Tao, Jun Miao, Jun Wang, Wenqi Li, Yongsheng Xu, Fangquan Wang, Jiang Yanjie, Zhihui Chen, Fangjun Fan, Mingliang Xu, Jie Yang
Software Mentions: 1
Published: about 6 years ago

10.1186/s12284-020-00446-9

The Amino Acid Transporter OsAAP4 Contributes to Rice Tillering and Grain Yield by Regulating Neutral Amino Acid Allocation through Two Splicing Variants
Cited by: 32
Author(s): Zhongming Fang, Bowen Wu, Yuanyuan Ji
Software Mentions: 1
Published: almost 6 years ago

10.7554/eLife.20420

Ribosomal mutations promote the evolution of antibiotic resistance in a multidrug environment
Cited by: 50
Author(s): James Gómez, Benjamin B Kaufmann-Malaga, Carl N. Wivagg, Peter B Kim, Melanie R. Silvis, Nikolai Renedo, Thomas R. Ioerger, Rushdy Ahmad, Jonathan Livny, Skye Fishbein, James C. Sacchettini, Steven A. Carr, Deborah T. Hung
Software Mentions: 1
Published: over 9 years ago

10.3389/fimmu.2019.00222

Expression of the Phosphatase Ppef2 Controls Survival and Function of CD8+ Dendritic Cells
Cited by: 3
Author(s): Markus Zwick, Thomas Ulas, Yi-Li Cho, Christine Ried, Leonie Grosse, C. Robson Simon, Caroline Bernhard, Dirk H. Busch, Joachim L. Schultze, Veit R. Buchholz, Susanne Stutte, Thomas Brocker
Software Mentions: 1
Published: almost 8 years ago

10.7717/peerj.8895

Comparative transcriptomics characterized the distinct biosynthetic abilities of terpenoid and paeoniflorin biosynthesis in herbaceous peony strains
Cited by: 4
Author(s): Bao-Wei Lu, Fengxia An, Liangjing Cao, Qian Gao, Xuan Wang, Yongjian Yang, Pengming Liu, Baoliang Yang, Tong Chen, Xin-Chang Li, Qinghua Chen, Jun Li
Software Mentions: 1
Published: over 6 years ago

10.1155/2021/9958745

The Potential Genes Mediate the Pathogenicity of Allogeneic CD4+T Cell in aGVHD Mouse Model
Cited by: 2
Author(s): Zhengyu Yu, Chenchen Qin, Min Cao, Xiaoya He, Hanyun Ren, Huihui Liu
Software Mentions: 1
Published: over 5 years ago

10.1084/jem.20191766

Antibodies against human endogenous retrovirus K102 envelope activate neutrophils in systemic lupus erythematosus
Cited by: 19
Author(s): Maria Tokuyama, Bronwyn M. Gunn, Arvind Venkataraman, Yong Kong, Insoo Kang, Tasfia Rakib, Michael J. Townsend, Karen H. Costenbader, Galit Alter, Akiko Iwasaki
Software Mentions: 1
Published: over 5 years ago

10.1186/s12864-017-4361-7

Training the salmon’s genes: influence of aerobic exercise, swimming performance and selection on gene expression in Atlantic salmon
Cited by: 12
Author(s): Nick Robinson, Gerrit Timmerhaus, Matthew Baranski, Øivind Andersen, Harald Takle, Aleksei Krasnov
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-018-32374-6

GWAS and eQTL analysis identifies a SNP associated with both residual feed intake and GFRA2 expression in beef cattle
Cited by: 38
Author(s): Marc G. Higgins, Claire Fitzsimons, Matthew McClure, Clare McKenna, Stephen Conroy, David A. Kenny, M. McGee, Sinéad M. Waters, Derek W. Morris
Software Mentions: 1
Published: about 8 years ago

10.3389/fimmu.2020.590870

The Neat Dance of COVID-19: NEAT1, DANCR, and Co-Modulated Cholinergic RNAs Link to Inflammation
Cited by: 32
Author(s): Chanan Meydan, Nimrod Madrer, Hermona Soreq
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-018-32941-x

The imprinted gene Pw1/Peg3 regulates skeletal muscle growth, satellite cell metabolic state, and self-renewal
Cited by: 17
Author(s): Rosa Maria Correra, David Ollitrault, Mariana Valente, Alessia Mazzola, Bjorn T. Adalsteinsson, Anne C. Ferguson-Smith, Giovanna Marazzi, David Sassoon
Software Mentions: 1
Published: about 8 years ago

10.1186/s12864-019-5987-4

Deep RNA-Seq reveals miRNome differences in mammary tissue of lactating Holstein and Montbéliarde cows
Cited by: 24
Author(s): Pierre-Alexis Billa, Yannick Faulconnier, T. Ye, Mathilde Chervet, Fabienne Le Provost, José Pires, Christine Leroux
Software Mentions: 1
Published: over 7 years ago

10.3389/fimmu.2020.01311

“Small” Intestinal Immunopathology Plays a “Big” Role in Lethal Cytokine Release Syndrome, and Its Modulation by Interferon-γ, IL-17A, and a Janus Kinase Inhibitor
Cited by: 9
Author(s): Shiv D. Kale, Brittney N. Mehrkens, Molly M. Stegman, Bridget Kastelberg, Henry Carnes, Rachel J. McNeill, Amy Rizzo, Saikumar Karyala, Sheryl Coutermarsh-Ott, Jackie A. Fretz, Ying Sun, Jonathan L. Koff, Govindarajan Rajagopalan
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-018-33383-1

The Duality of the MAPK Signaling Pathway in the Control of Metabolic Processes and Cellulase Production in Trichoderma reesei
Cited by: 30
Author(s): Renato Graciano de Paula, Amanda Cristina Campos Antoniêto, Cláudia Batista Carraro, Douglas Christian Borges Lopes, Gabriela Félix Persinoti, Nalu Teixeira Aguiar Peres, Nilce Maria Martinez-Rossi, Rafael Silva‐Rocha, Roberto Nascimento Silva
Software Mentions: 1
Published: about 8 years ago

10.3389/fimmu.2021.686462

Enhanced Expression of Autoantigens During SARS-CoV-2 Viral Infection
Cited by: 17
Author(s): Narjes Saheb Sharif-Askari, Fatemeh Saheb Sharif-Askari, Samrein B M Ahmed, Suad Hannawi, Rifat Hamoudi, Qutayba Hamid, Rabih Halwani
Software Mentions: 1
Published: over 5 years ago

10.3389/fcell.2020.00173

Inhibition of Gamma-Secretase Promotes Axon Regeneration After a Complete Spinal Cord Injury
Cited by: 13
Author(s): Daniel Sobrido‐Cameán, Diego Robledo, Daniel Romaus-Sanjurjo, Vanessa Pérez-Cedrón, Laura Sánchez, Marı́a Celina Rodicio, Antón Barreiro‐Iglesias
Software Mentions: 1
Published: over 6 years ago

10.3389/fcell.2020.565355

LncRNA AC010789.1 Promotes Colorectal Cancer Progression by Targeting MicroRNA-432-3p/ZEB1 Axis and the Wnt/β-Catenin Signaling Pathway
Cited by: 15
Author(s): Weili Duan, Xue Kong, Juan Li, Peilong Li, Yinghui Zhao, Tong Liu, Helen Binang, Yunshan Wang, Du Li, Chuanxin Wang
Software Mentions: 1
Published: about 6 years ago

10.1186/s12864-021-07528-y

Transcriptional profiling reveals potential involvement of microvillous TRPM5-expressing cells in viral infection of the olfactory epithelium
Cited by: 14
Author(s): B. Dnate’ Baxter, Eric D. Larson, Laëtitia Merle, Paul Feinstein, Arianna Gentile Polese, Andrew N. Bubak, Christy S. Niemeyer, James E. Hassell, Doug P. Shepherd, Vijay R. Ramakrishnan, Maria A. Nagel, Diego Restrepo
Software Mentions: 1
Published: over 5 years ago

10.1155/2019/2951427

Transcriptome Analysis Reveals the Effect of Long Intergenic Noncoding RNAs on Pig Muscle Growth and Fat Deposition
Cited by: 9
Author(s): Guoting Chen, Xiangdong Cheng, Gaoli Shi, Cheng Zou, Lin Chen, Jingxuan Li, Mengxun Li, Fang Cui, Changchun Li
Software Mentions: 1
Published: over 7 years ago

10.7717/peerj.8768

Transcriptome sequencing and analysis reveals the molecular response to selenium stimuli in Pueraria lobata (willd.) Ohwi
Cited by: 7
Author(s): Kunyuan Guo, Yiming Yao, Meng Yang, Yanni Li, Bin Wu, Xianming Lin
Software Mentions: 1
Published: over 6 years ago

10.3390/cancers12020418

Ductal Carcinoma In Situ Progression in Dog Model of Breast Cancer
Cited by: 12
Author(s): Sabira Mohammed, Sagar M. Utturkar, Maxwell Lee, Li Yang, Zelin Cui, Nadia M. Atallah, Guangjun Zhang, Xavier E Ramos Cardona, Suresh K. Mittal, Margaret A. Miller
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-018-34637-8

Dysregulated gene expression predicts tumor aggressiveness in African-American prostate cancer patients
Cited by: 21
Author(s): Hamdy Ali, Pei-Yau Lung, Andrew B. Sholl, Shaimaa A. Gad, Juan J. Bustamante, Johng S. Rhim, Gagan Deep, Jinfeng Zhang, Zakaria Y. Abd Elmageed
Software Mentions: 1
Published: about 8 years ago

10.3389/fimmu.2020.00405

Transcriptomic Analysis of Monocyte-Derived Non-Phagocytic Macrophages Favors a Role in Limiting Tissue Repair and Fibrosis
Cited by: 23
Author(s): Sergei Butenko, Senthil Kumaran Satyanarayanan, Simaan Assi, Sagie Schif-Zuck, Dalit Barkan, Noa Sher, Amiram Ariel
Software Mentions: 1
Published: over 6 years ago

10.1111/jfb.14649

Modulation of hepatic <scp>miRNA</scp> expression in Atlantic salmon ( <scp> Salmo salar </scp> ) by family background and dietary fatty acid composition
Cited by: 6
Author(s): Tone-Kari K Østbye, Nardos Tesfaye Woldemariam, Camilla Lundberg, Gerd Marit Berge, Bente Ruyter, Rune Andreassen
Software Mentions: 1
Published: almost 6 years ago

10.1002/ijc.32058

Preclinical evaluation of the first intravenous small molecule MDM2 antagonist alone and in combination with temozolomide in neuroblastoma
Cited by: 22
Author(s): Lindi Chen, Fabio Pastorino, Philip Berry, Jennifer J. Bonner, Calum Kirk, Katrina Wood, Huw D. Thomas, Yan Zhao, Antonio Daga, Gareth J. Veal, John Lunec, David R. Newell, Mirco Ponzoni, Deborah A. Tweddle
Software Mentions: 1
Published: almost 8 years ago

10.3389/fcell.2020.618796

Modeling Uremic Vasculopathy With Induced Pluripotent Stem Cell-Derived Endothelial Cells as a Drug Screening System
Cited by: 3
Author(s): Hye Ryoun Jang, Hyung Joon Cho, Yang Zhou, Ning‐Yi Shao, Kyung-Ho Lee, Hoai Huong Thi Le, Junseok Jeon, Jung Eun Lee, Wooseong Huh, Sang-Ging Ong, Won Hee Lee, Yoon-Goo Kim
Software Mentions: 1
Published: almost 6 years ago

10.1002/ijc.31170

The arginine metabolome in acute lymphoblastic leukemia can be targeted by the pegylated-recombinant arginase I BCT-100
Cited by: 41
Author(s): Carmela De Santo, Sarah Booth, Ashley Vardon, Antony Cousins, Vanessa Tubb, Tracey Perry, Boris Noyvert, Andrew D Beggs, Margaret H.L. Ng, Christina Halsey, Pamela Kearns, Paul Cheng, Francis Mussai
Software Mentions: 1
Published: almost 9 years ago

10.18632/oncotarget.15815

Clinical relevance of the transcriptional signature regulated by CDC42 in colorectal cancer
Cited by: 12
Author(s): Fátima Valdés-Mora, Warwick J. Locke, Eva Bandrés, David Gallego‐Ortega, Paloma Cejas, Miguel Ángel García‐Cabezas, Yolanda Colino‐Sanguino, Jaime Feliú, Teresa Gómez del Pulgar, Juan Carlos Lacal
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-018-36008-9

Pathway sensor-based functional genomics screening identifies modulators of neuronal activity
Cited by: 3
Author(s): Alexander Herholt, Ben Brankatschk, Nirmal Kannaiyan, Sergi Papiol, Sven P. Wichert, Michael C. Wehr, Moritz J. Rossner
Software Mentions: 1
Published: almost 8 years ago

10.1007/s00384-017-2819-3

Study protocol on the role of intestinal microbiota in colorectal cancer treatment: a pathway to personalized medicine 2.0
Cited by: 18
Author(s): Romy Aarnoutse, J. M. P. G. M. de Vos-Geelen, John Penders, Evert-Jan G. Boerma, Fabienne Warmerdam, B. Goorts, Steven W. M. Olde Damink, Zita Soons, Sander S. Rensen, Marjolein L. Smidt
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-018-36316-0

Deep sequencing and transcriptome analysis to identify genes related to biosynthesis of aristolochic acid in Asarum heterotropoides
Cited by: 13
Author(s): Xiaohan Wang, Hui Fang, Yong-Cheng Yang, Shihai Yang
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41598-018-36932-w

Metabolome and transcriptome-wide effects of the carbon storage regulator A in enteropathogenic Escherichia coli
Cited by: 26
Author(s): Volker Berndt, Michael Beckstette, Marcel Volk, Petra Dersch, Mark Brönstrup
Software Mentions: 1
Published: almost 8 years ago

10.7717/peerj.9661

Sequencing, assembly, annotation, and gene expression: novel insights into browning-resistant Luffa cylindrica
Cited by: 4
Author(s): Yahui Wang, Xiaohong Liu, Rongrong Zhang, Zhiming Yan, Ai‐Sheng Xiong, Xiaojun Su
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-018-36841-y

Discovery and evaluation of inhibitor of LARP6 as specific antifibrotic compound
Cited by: 29
Author(s): Branko Stefanovic, Zarko Manojlovic, Cynthia Vied, C H Badger, Lela Stefanovic
Software Mentions: 1
Published: almost 8 years ago

10.1186/s12864-021-07888-5

Research on the drought tolerance mechanism of Pennisetum glaucum (L.) in the root during the seedling stage
Cited by: 14
Author(s): Ailing Zhang, Jicheng Yang, Min Sun, Chuang Lin, Puding Zhou, Juncai Ren, Dan Luo, Xiaoshan Wang, Congyu Ma, Xinquan Zhang, Guangyan Feng, Gang Nie, Linkai Huang
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-018-36953-5

Effects of the long-term storage of human fecal microbiota samples collected in RNAlater
Cited by: 34
Author(s): Julien Tap, Stéphanie Cools-Portier, Sonia Pavan, Anne Druesne, Lena Öhman, Hans Törnblom, Magnus Simrén, Muriel Derrien
Software Mentions: 1
Published: almost 8 years ago

10.3390/dj6040058

Substantial Differences in the Subgingival Microbiome Measured by 16S Metagenomics According to Periodontitis Status in Older Women
Cited by: 11
Author(s): Michael J. LaMonte, Robert J. Genco, Wei Zheng, Daniel McSkimming, Chris Andrews, Kathleen M. Hovey, Lü Li, Yijun Sun, Michael Buck, Amy E. Millen, Karen L. Falkner, Jean Wactawski‐Wende
Software Mentions: 1
Published: about 8 years ago

10.7717/peerj.10529

Identification and analysis of lncRNA, microRNA and mRNA expression profiles and construction of ceRNA network in Talaromyces marneffei-infected THP-1 macrophage
Cited by: 8
Author(s): Yueqi Li, Wudi Wei, Sanqi An, Junjun Jiang, Jinhao He, Hong Zhang, Gang Wang, Jing Han, Bingyu Liang, Ye Li, Hao Liang
Software Mentions: 1
Published: almost 6 years ago

10.3389/fcell.2020.613540

CircRNAs Dysregulated in Juvenile Myelomonocytic Leukemia: CircMCTP1 Stands Out
Cited by: 10
Author(s): Anna Dal Molin, Mattias Hofmans, Enrico Gaffo, Alessia Buratin, Hélène Cavé, Christian Flotho, Valérie de Haas, Charlotte M. Niemeyer, Jan Starý, Pieter Van Vlierberghe, Jan Philippé, Barbara De Moerloose, G. te Kronnie, Silvia Bresolin, Tim Lammens, Stefania Bortoluzzi
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-018-36785-3

Exon junction complex components Y14 and Mago still play a role in budding yeast
Cited by: 3
Author(s): Anita Boisramé, Hugo Devillers, Djamila Onésime, François Brunel, Juliette Pouch, Mathieu Piot, Cécile Neuveglise
Software Mentions: 1
Published: almost 8 years ago

10.3390/jof7010030

Aspergillus fumigatus, One Uninucleate Species with Disparate Offspring
Cited by: 13
Author(s): François Danion, Norman van Rhijn, Alexandre Dufour, Rachel Legendre, Odile Sismeiro, Hugo Varet, Jean‐Christophe Olivo‐Marin, Isabelle Mouyna, Georgios Chamilos, Michael Bromley, Anne Beauvais, Jean‐Paul Latgé
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12864-016-3334-6

Transcriptome profiling in the damselfly Ischnura elegans identifies genes with sex-biased expression
Cited by: 24
Author(s): Pallavi Chauhan, Maren Wellenreuther, Bengt Hansson
Software Mentions: 1
Published: almost 10 years ago

10.1038/s41598-018-37761-7

Telencephalon transcriptome analysis of chronically stressed adult zebrafish
Cited by: 12
Author(s): Victoria Huang, Anderson A. Butler, Farah D. Lubin
Software Mentions: 1
Published: almost 8 years ago

10.3390/cancers13123017

Prognostic Significance of KIF11 and KIF14 Expression in Pancreatic Adenocarcinoma
Cited by: 7
Author(s): Anna Klimaszewska‐Wiśniewska, Izabela Neska−Długosz, Karolina Buchholz, Justyna Durślewicz, Dariusz Grzanka, Anna Kasperska, Paulina Antosik, Jan Zabrzyński, Alina Grzanka, Maciej Gagat
Software Mentions: 1
Published: over 5 years ago

10.20411/pai.v3i2.250

Fecal Host Transcriptomics for Non-invasive Human Mucosal Immune Profiling: Proof of Concept in Clostridium difficile Infection
Cited by: 8
Author(s): Robert Salais, Amanda Barrett, Kornelia Edes, Michael C. Graves, Litty Paul, Jenna Rychert, Bert K. Lopansri, Daniel T. Leung
Software Mentions: 1
Published: about 8 years ago

10.7554/eLife.66687

Respiratory and intestinal epithelial cells exhibit differential susceptibility and innate immune responses to contemporary EV-D68 isolates
Cited by: 15
Author(s): Megan Culler Freeman, Alexandra I. Wells, Jessica Ciomperlik-Patton, Michael M. Myerburg, Liheng Yang, Jennifer L. Konopka-Anstadt, Carolyn B. Coyne
Software Mentions: 1
Published: over 5 years ago

10.3390/pathogens9060479

Identification of lncRNAs Involved in PCV2 Infection of PK-15 Cells
Cited by: 5
Author(s): Jin He, Chaoliang Leng, Jiazhen Pan, Aoqi Li, Hua Zhang, Cong Feng, Huanan Wang
Software Mentions: 1
Published: over 6 years ago

Projects: bioconductor: DESeq2

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Science Score: 100/100

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Papers Mentioning DESeq2 9,583