bioconductor: DESeq2 | Projects | Ecosyste.ms: Papers

10.1038/s41598-020-63537-z

Efficient differentiation and polarization of primary cultured neurons on poly(lactic acid) scaffolds with microgrooved structures
Cited by: 6
Author(s): Asako Otomo, Mahoko Takahashi Ueda, Toshinori Fujie, Arihiro Hasebe, Yoshitaka Suematsu, Yosuke Okamura, Shinji Takeoka, Shinji Hadano, So Nakagawa
Software Mentions: 1
Published: over 5 years ago

10.3390/genes10100821

Non-Coding RNA Sequencing of Equine Endometrium During Maternal Recognition of Pregnancy
Cited by: 7
Author(s): K.M. Klohonatz, Stephen J. Coleman, Ashley D. Cameron, Ann Hess, Kailee J. Reed, Ángela Cánovas, Juan F. Medrano, Alma Islas–Trejo, Theodore S. Kalbfleisch, Gerrit J. Bouma, J.E. Bruemmer
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-020-63602-7

Establishment of macaque trophoblast stem cell lines derived from cynomolgus monkey blastocysts
Cited by: 10
Author(s): Shoma Matsumoto, Christopher J. Porter, Naomi Ogasawara, Chizuru Iwatani, Hideaki Tsuchiya, Yasunari Seita, Yung-Sheng Chang, Ikuhiro Okamoto, Mitinori Saitou, Masatsugu Ema, Theodore J. Perkins, William L. Stanford, Satoshi Tanaka
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-020-63950-4

Transcriptome profiling of spike provides expression features of genes related to terpene biosynthesis in lavender
Cited by: 9
Author(s): Danli Guo, Kaicheng Kang, Pu Wang, Min Li, Xianzhong Huang
Software Mentions: 1
Published: over 5 years ago

10.1155/2019/2503924

Transcriptome Analysis and Emerging Driver Identification of CD8+ T Cells in Patients with Vitiligo
Cited by: 7
Author(s): Qiancheng Deng, Jingchao Wei, Puyu Zou, Yangfan Xiao, Zhuotong Zeng, Yaqian Shi, Yi Zhan, Huiming Zhang, Boyu Tang, Qinghai Zeng, Rong Xiao
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-020-63514-6

Development of a new macrophage-specific TRAP mouse (MacTRAP) and definition of the renal macrophage translational signature
Cited by: 2
Author(s): Andreas Hofmeister, Maximilian C. Thomaßen, Sabrina Markert, André Marquardt, Mathieu Preußner, Martin Rußwurm, Ralph T. Schermuly, Ulrich Steinhoff, Hermann Josef Gröne, Joachim Hoyer, Benjamin D. Humphreys, Ivica Grgic
Software Mentions: 1
Published: about 5 years ago

10.3390/genes10100749

Coding RNA Sequencing of Equine Endometrium during Maternal Recognition of Pregnancy
Cited by: 12
Author(s): K.M. Klohonatz, Stephen J. Coleman, Alma Islas–Trejo, Juan F. Medrano, Ann Hess, Theodore S. Kalbfleisch, M. G. Thomas, Gerrit J. Bouma, J.E. Bruemmer
Software Mentions: 1
Published: almost 6 years ago

10.3390/genes10100824

Implications of Gene Inheritance Patterns on the Heterosis of Abdominal Fat Deposition in Chickens
Cited by: 13
Author(s): Chunning Mai, Chaoliang Wen, Chang Sun, Zhi‐Yuan Xu, Sirui Chen, Ning Yang
Software Mentions: 1
Published: almost 6 years ago

10.3390/ijms21144823

Distal-Less Homeobox 5 Is a Therapeutic Target for Attenuating Hypertrophy and Apoptosis of Mesenchymal Progenitor Cells
Cited by: 6
Author(s): John Twomey‐Kozak, Salomi Desai, Wenguang Liu, Neill Y. Li, Nicholas J. Lemme, Qian Chen, Brett D. Owens, Chathuraka T. Jayasuriya
Software Mentions: 1
Published: about 5 years ago

10.3390/genes10090712

The Pituitary Transcriptional Response Related to Feed Conversion in Pigs
Cited by: 6
Author(s): Katarzyna Piórkowska, Kacper Żukowski, M. Tyra, Magdalena Szyndler-Nędza, K. Szulc, E. Skrzypczak, Katarzyna Ropka‐Molik
Software Mentions: 1
Published: almost 6 years ago

10.3390/genes10080601

Genetic Potential of the Biocontrol Agent Pseudomonas brassicacearum (Formerly P. trivialis) 3Re2-7 Unraveled by Genome Sequencing and Mining, Comparative Genomics and Transcriptomics
Cited by: 30
Author(s): Johanna Nelkner, Gonzalo Arturo Torres Tejerizo, Julia Hassa, Timo Wentong Lin, J. Witte, Bart Verwaaijen, Anderson M. Winkler, Boyke Bunk, Cathrin Spröer, Jörg Overmann, Rita Grosch, Alfred Pühler, Andreas Schlüter
Software Mentions: 1
Published: almost 6 years ago

10.3390/genes10060465

Transcriptome Changes during Major Developmental Transitions Accompanied with Little Alteration of DNA Methylome in Two Pleurotus Species
Cited by: 8
Author(s): Jiawei Wen, Zhibin Zhang, Lei Gong, Hongwei Xun, Juzuo Li, Qiyu Bao, Qi Wang, Yongming Li, Li Yu, Liu B
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-020-65680-z

Differential miRNAs expression pattern of irradiated breast cancer cell lines is correlated with radiation sensitivity
Cited by: 17
Author(s): Nastaran Masoudi-Khoram, Parviz Abdolmaleki, Nazanin Hosseinkhan, Alireza Nikoofar, Seyed Javad Mowla, Hamideh Monfared, Gustavo Baldassarre
Software Mentions: 1
Published: about 5 years ago

10.1111/mmi.14156

Characterisation of the <i>Toxoplasma gondii</i> tyrosine transporter and its phosphorylation by the calcium‐dependent protein kinase 3
Cited by: 17
Author(s): Bethan A. Wallbank, Caia Dominicus, Malgorzata Broncel, Nathalie Legrave, Gavin Kelly, James I. MacRae, Henry M. Staines, Moritz Treeck
Software Mentions: 1
Published: over 6 years ago

10.3390/genes10020111

Identification of Genes Involved in Low Temperature-Induced Senescence of Panicle Leaf in Litchi chinensis
Cited by: 2
Author(s): Congcong Wang, Hao Liu, Shanlin Yu, Houbin Chen, Fuchu Hu, Huiling Zhan, Xifen Pan, Yuhua Lao, Silin Zhong, Biyan Zhou
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms21145076

Expression Profiling and Functional Characterization of miR-26a and miR-130a in Regulating Zhongwei Goat Hair Development via the TGF-β/SMAD Pathway
Cited by: 9
Author(s): Yangyang Ding, Xianglan Xue, Zhanfa Liu, Yong Ye, Ping Xiao, Yong‐Jin Pu, Weijun Guan, Joram M. Mwacharo, Yuehui Ma, Qianjun Zhao
Software Mentions: 1
Published: about 5 years ago

10.1186/s12920-021-00957-4

Robust biomarker discovery for hepatocellular carcinoma from high-throughput data by multiple feature selection methods
Cited by: 13
Author(s): Zishuang Zhang, Zhi-Ping Liu
Software Mentions: 1
Published: almost 4 years ago

10.3390/genes10020145

Dynamic Expression of Interferon Lambda Regulated Genes in Primary Fibroblasts and Immune Organs of the Chicken
Cited by: 10
Author(s): Arslan Mehboob, Xin Yang, Diwakar Santhakumar, Xingjian Liu, Xiaoyuan Hu, Muhammad Munir, Yinü Li, Zhifang Zhang
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms21155284

Shade Effects on Peanut Yield Associate with Physiological and Expressional Regulation on Photosynthesis and Sucrose Metabolism
Cited by: 18
Author(s): Tingting Chen, Huajian Zhang, Ruier Zeng, Xinyue Wang, Lüping Huang, Leidi Wang, Xuewen Wang, Lei Zhang
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-020-66622-5

Antibiotic effect and microbiome persistence vary along the European seabass gut
Cited by: 29
Author(s): Fotini Kokou, Goor Sasson, Itzhak Mizrahi, Avner Cnaani
Software Mentions: 1
Published: about 5 years ago

10.3390/genes9120624

Transcriptome Analysis Reveals Candidate Genes for Cold Tolerance in Drosophila ananassae
Cited by: 18
Author(s): Annabella Königer
Software Mentions: 1
Published: over 6 years ago

10.3390/genes9120627

A-to-I RNA Editing Affects lncRNAs Expression after Heat Shock
Cited by: 4
Author(s): Roni Haas, Nabeel S. Ganem, Ayya Keshet, Angela Orlov, Ayelet Fishman, Ayelet T. Lamm
Software Mentions: 1
Published: over 6 years ago

10.3389/fonc.2021.712849

ER-α36 Promotes the Malignant Progression of Cervical Cancer Mediated by Estrogen via HMGA2
Cited by: 4
Author(s): Chunyan Wang, Tianli Zhang, Kun Wang, Shuo Zhang, Qing Sun, Xinggang Yang
Software Mentions: 1
Published: about 4 years ago

10.1016/j.molmet.2021.101227

The Mediator complex kinase module is necessary for fructose regulation of liver glycogen levels through induction of glucose-6-phosphatase catalytic subunit (G6pc)
Cited by: 3
Author(s): Dou Yeon Youn, Alus M. Xiaoli, Haihong Zong, Junichi Okada, Li Liu, Jacob B. Pessin, Jeffrey E. Pessin, Fajun Yang
Software Mentions: 1
Published: about 4 years ago

10.3389/fonc.2020.00338

Discovery of Pancreatic Ductal Adenocarcinoma-Related Aberrant Glycosylations: A Multilateral Approach of Lectin Microarray-Based Tissue Glycomic Profiling With Public Transcriptomic Datasets
Cited by: 16
Author(s): Takanori Wagatsuma, Chiaki Nagai‐Okatani, Atsushi Matsuda, Yohei Masugi, Masako Imaoka, Ken Yamazaki, Michiie Sakamoto, Atsushi Kuno
Software Mentions: 1
Published: over 5 years ago

10.3389/fonc.2019.01172

Telomere Length Maintenance and Its Transcriptional Regulation in Lynch Syndrome and Sporadic Colorectal Carcinoma
Cited by: 28
Author(s): Lilit Nersisyan, Lydia Hopp, Henry Loeffler‐Wirth, Joerg Galle, Markus Loeffler, Arsen Arakelyan, Hans Binder
Software Mentions: 1
Published: over 5 years ago

10.3389/fonc.2021.629665

Transcriptomic Profiling of In Vitro Tumor-Stromal Cell Paracrine Crosstalk Identifies Involvement of the Integrin Signaling Pathway in the Pathogenesis of Mesenteric Fibrosis in Human Small Intestinal Neuroendocrine Neoplasms
Cited by: 5
Author(s): Faidon-Marios Laskaratos, Ana Levi, Gert Schwach, Roswitha Pfragner, Andrew Hall, Dong Xia, Conrad von Stempel, Josephine Bretherton, Kessarin Thanapirom, Sarah Alexander, Olagunju Ogunbiyi, Jennifer Watkins, Tu Vinh Luong, Christos Toumpanakis, Dalvinder Mandair, Martyn Caplin, Krista Rombouts
Software Mentions: 1
Published: over 4 years ago

10.3389/fonc.2020.584330

BaBao Dan Suppresses Tumor Growth of Pancreatic Cancer Through Modulating Transcriptional Reprogramming of Cancer-Related Genes
Cited by: 2
Author(s): Liang Song, Zhixiao Fang, Pan Chuan-fang, Xiangyuan Chen, Qian Xiang, Yunyun Cai, Xiumei Zhang, Luming Liu
Software Mentions: 1
Published: over 4 years ago

10.3389/fonc.2019.00185

CACNA2D3 Enhances the Chemosensitivity of Esophageal Squamous Cell Carcinoma to Cisplatin via Inducing Ca2+-Mediated Apoptosis and Suppressing PI3K/Akt Pathways
Cited by: 17
Author(s): Changjun Nie, Xiaohui Qin, Xiaoyan Li, Baoqing Tian, Ying Zhao, Jing Yuan, Yadan Li, Qiang Wang, Dingyuan Zeng, Hongyu An, Xiaojia Chen
Software Mentions: 1
Published: over 6 years ago

10.1016/j.molmet.2017.07.014

Single-cell RNA-sequencing reveals a distinct population of proglucagon-expressing cells specific to the mouse upper small intestine
Cited by: 64
Author(s): Leslie Glass, Fernando J. Calero-Nieto, Wajid Jawaid, Pierre Larraufie, Richard G. Kay, Berthold Göttgens, Frank Reimann, Fiona M. Gribble
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41598-020-67603-4

Microinjection induces changes in the transcriptome of bovine oocytes
Cited by: 2
Author(s): Minjie Tan, Helena T A van Tol, Michal Mokrý, T.A.E. Stout, Bernard A.J. Roelen
Software Mentions: 1
Published: about 5 years ago

10.1155/2020/7370157

Elevated Glutathione Peroxidase 2 Expression Promotes Cisplatin Resistance in Lung Adenocarcinoma
Cited by: 29
Author(s): Du He, Chen Bi, Nanlin Jiao, Yanhua Liu, Shuai Sun, Youwei Zhang
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-020-67966-8

Environmental enrichment during forced abstinence from cocaine self-administration opposes gene network expression changes associated with the incubation effect
Cited by: 11
Author(s): Gregory L. Powell, Annika Vannan, Ryan M. Bastle, Melissa A. Wilson, Michela Dell’Orco, Nora I. Perrone‐Bizzozero, Janet L. Neisewander
Software Mentions: 1
Published: about 5 years ago

10.1016/j.molmet.2017.08.016

Host–microbiota interaction induces bi-phasic inflammation and glucose intolerance in mice
Cited by: 29
Author(s): Antonio Molinaro, Robert Caesar, Louise Mannerås Holm, Valentina Tremaroli, Patrice D. Cani, Fredrik Bäckhed
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-020-67728-6

To gel or not to gel: differential expression of carrageenan-related genes between the gametophyte and tetasporophyte life cycle stages of the red alga Chondrus crispus
Cited by: 19
Author(s): Agnieszka P. Lipinska, Jonas Collén, Stacy A. Krueger‐Hadfield, Theo Mora, E. Ficko-Blean
Software Mentions: 1
Published: about 5 years ago

10.3389/fonc.2021.651796

Long Non-coding RNA LINC02474 Affects Metastasis and Apoptosis of Colorectal Cancer by Inhibiting the Expression of GZMB
Cited by: 15
Author(s): Tiantian Du, Qinglun Gao, Yinghui Zhao, Jie Gao, Juan Li, Lili Wang, Peilong Li, Yunshan Wang, Du Li, Chuanxin Wang
Software Mentions: 1
Published: over 4 years ago

10.1155/2020/7895293

Bu-Shen-Yi-Sui Capsule, an Herbal Medicine Formula, Promotes Remyelination by Modulating the Molecular Signals via Exosomes in Mice with Experimental Autoimmune Encephalomyelitis
Cited by: 10
Author(s): Peiyuan Zhao, Jing Ji, Xihong Liu, Hui Zhao, Bin Xue, Liang-Yun Jin, Yongping Fan, Wenjing Zhao, Lei Wang
Software Mentions: 1
Published: about 5 years ago

10.3389/fonc.2021.665192

Identification METTL18 as a Potential Prognosis Biomarker and Associated With Immune Infiltrates in Hepatocellular Carcinoma
Cited by: 8
Author(s): Tianhao Li, Qi Cheng, Bangbo Zhao, Hongtao Cao, Xiaoying Yang, Yuanyang Wang, Zeru Li, Xingtong Zhou, Weibin Wang
Software Mentions: 1
Published: about 4 years ago

10.3389/fonc.2018.00594

Loss of Nuclear Functions of HOXA10 Is Associated With Testicular Cancer Proliferation
Cited by: 12
Author(s): Ruiqi Chen, Haolong Li, Yinan Li, Ladan Fazli, Martin Gleave, Lucia Nappi, Xuesen Dong
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-021-88052-7

Central nervous system (CNS) transcriptomic correlates of human immunodeficiency virus (HIV) brain RNA load in HIV-infected individuals
Cited by: 11
Author(s): Pietro Paolo Sanna, Yu Fu, Eliezer Masliah, Céline Lefèbvre, Vez Repunte‐Canonigo
Software Mentions: 1
Published: about 4 years ago

10.3389/fonc.2021.632181

The Protozoan Inhibitor Atovaquone Affects Mitochondrial Respiration and Shows In Vitro Efficacy Against Glucocorticoid-Resistant Cells in Childhood B-Cell Acute Lymphoblastic Leukaemia
Cited by: 4
Author(s): Yordan Sbirkov, Т. П. Иванова, Hasan Burnusuzov, Kalina Gercheva, Kevin Petrie, Tino Schenk, Victoria Sarafian
Software Mentions: 1
Published: over 4 years ago

10.3389/fonc.2020.584280

Age and Tumor Differentiation-Associated Gene Expression Based Analysis of Non-Familial Prostate Cancers
Cited by: 3
Author(s): Shashwat Sharad, Travis Allemang, Hua Li, Darryl Nousome, Anson T. Ku, Nichelle C. Whitlock, Adam G. Sowalsky, Jennifer Cullen, Isabell A. Sesterhenn, David G. McLeod, Shiv Srivastava, Albert Dobi
Software Mentions: 1
Published: over 4 years ago

10.3389/fonc.2021.663221

Low miR-214-5p Expression Correlates With Aggressive Subtypes of Pediatric ALCL With Non-Common Histology
Cited by: 3
Author(s): Piero Di Battista, Federica Lovisa, Enrico Gaffo, Ilaria Gallingani, Carlotta C. Damanti, Anna Garbin, Lavinia Ferrone, Elisa Carraro, Marta Pillon, Luca Lo Nigro, Rossella Mura, Marco Pizzi, Vincenza Guzzardo, Angelo Paolo Dei Tos, Alessandra Biffi, Stefania Bortoluzzi, Lara Mussolin
Software Mentions: 1
Published: about 4 years ago

10.3390/ijms21176137

Photosystem Disorder Could be the Key Cause for the Formation of Albino Leaf Phenotype in Pecan
Cited by: 2
Author(s): Jiyu Zhang, Tao Wang, Zhemin Jia, Xuehua Zhang, Yongzhi Liu, Gang Wang
Software Mentions: 1
Published: almost 5 years ago

10.3389/fonc.2020.544956

Identification of Subtype-Specific Metastasis-Related Genetic Signatures in Sarcoma
Cited by: 6
Author(s): Yaling Li, Yali Gao, Xueli Niu, Yutong Wu, Yi-Mei Du, Mingsui Tang, Jingyi Li, Xiu-Hao Guan, Bing Song
Software Mentions: 1
Published: almost 5 years ago

10.3389/fonc.2020.01509

miR-452 Reverses Abnormal Glycosylation Modification of ERα and Estrogen Resistance in TNBC (Triple-Negative Breast Cancer) Through Targeting UGT1A1
Cited by: 9
Author(s): Yan Li, Yidong Zhou, Feng Mao, Songjie Shen, Bin Zhao, Yali Xu, Lin Yang, Xiaohui Zhang, Xi Cao, Ying Xu, Chang Chen, Jinqian Zhang, Qiang Sun
Software Mentions: 1
Published: almost 5 years ago

10.3389/fnut.2021.667622

Lipidomic and Transcriptomic Analysis of the Longissimus Muscle of Luchuan and Duroc Pigs
Cited by: 24
Author(s): Zhiwang Zhang, Qichao Liao, Yu Sun, Tingli Pan, Siqi Liu, Weiwei Miao, Yixing Li, Lei Zhou, Guoqiang Xu
Software Mentions: 1
Published: about 4 years ago

10.3389/fnut.2018.00046

Inefficient Metabolism of the Human Milk Oligosaccharides Lacto-N-tetraose and Lacto-N-neotetraose Shifts Bifidobacterium longum subsp. infantis Physiology
Cited by: 38
Author(s): Ezgi Özcan, David A. Sela
Software Mentions: 1
Published: about 7 years ago

10.3389/fnut.2020.00067

Intestinal Microbiota and Immune Modulation in Zebrafish by Fucoidan From Okinawa Mozuku (Cladosiphon okamuranus)
Cited by: 29
Author(s): Wakako Ikeda-Ohtsubo, Adrià López Nadal, Edoardo Zaccaria, Masahiko Iha, Haruki Kitazawa, Michiel Kleerebezem, Sylvia Brugman
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-021-92504-5

Comparative transcriptomic and physiological analyses of weedy rice and cultivated rice to identify vital differentially expressed genes and pathways regulating the ABA response
Cited by: 4
Author(s): Hong Lang, Yuting He, Faliang Zeng, Fan Xu, Mingzhu Zhao, Dianrong Ma
Software Mentions: 1
Published: about 4 years ago

10.3390/ijms21176180

Early Molecular Events during Onset of Diapause in Silkworm Eggs Revealed by Transcriptome Analysis
Cited by: 20
Author(s): Jing Gong, Xiaokun Zheng, Shan Zhao, Lingzhen Yang, Xue Zhao, Zhiping Fan, Miao Tang
Software Mentions: 1
Published: almost 5 years ago

10.3389/fnut.2021.746684

Determination of the Heterogeneity of Intramuscular Fat and Visceral Adipose Tissue From Dezhou Donkey by Lipidomics and Transcriptomics Profiling
Cited by: 10
Author(s): Mengmeng Li, Mingxia Zhu, Wenqiong Chai, Yonghui Wang, Yinghua Song, Baoxiu Liu, Changyun Cai, Yingzi Song, Xue Sun, Peng Xue, Changfa Wang
Software Mentions: 1
Published: almost 4 years ago

10.3389/fnut.2021.733197

Combined Transcriptomic and Lipidomic Analysis Reveals Dysregulated Genes Expression and Lipid Metabolism Profiles in the Early Stage of Fatty Liver Disease in Rats
Cited by: 3
Author(s): Ruina Zhai, Lei Feng, Yu Zhang, Wei Liu, Shengli Li, Zhiyong Hu
Software Mentions: 1
Published: almost 4 years ago

10.3390/ijms21176376

MBNL1-Associated Mitochondrial Dysfunction and Apoptosis in C2C12 Myotubes and Mouse Skeletal Muscle
Cited by: 6
Author(s): Susumu Yokoyama, Yoshitaka Ohno, Tatsuro Egawa, Kazuya Ohashi, Ryota Ito, Huascar Pedro Ortuste Quiroga, Tomohiro Yamashita, Katsumasa Goto
Software Mentions: 1
Published: almost 5 years ago

10.3389/fnins.2021.627945

Identification of Slc6a19os and SOX11 as Two Novel Essential Genes in Neuropathic Pain Using Integrated Bioinformatic Analysis and Experimental Verification
Cited by: 6
Author(s): Peng Chen, Chen Wang, Dongsheng Lin, Bing Li, Shuai Ye, Jinglian Qu, Wenjing Wang
Software Mentions: 1
Published: over 4 years ago

10.3389/fnins.2021.705160

A Neuroprotective Locus Modulates Ischemic Stroke Infarction Independent of Collateral Vessel Anatomy
Cited by: 3
Author(s): Han Kyu Lee, Sarah E. Wetzel-Strong, David L. Aylor, Douglas A. Marchuk
Software Mentions: 1
Published: almost 4 years ago

10.1038/s41598-021-92938-x

Unraveling regulatory divergence, heterotic malleability, and allelic imbalance switching in rice due to drought stress
Cited by: 3
Author(s): Nelzo C. Ereful, Antonio C. Laurena, Liyu Liu, Shu‐Fang Kao, Eric Tsai, Andy Greenland, W. Powell, Ian Mackay, Hei Leung
Software Mentions: 1
Published: about 4 years ago

10.3389/fnins.2017.00731

Small RNA Sequencing of Sporadic Amyotrophic Lateral Sclerosis Cerebrospinal Fluid Reveals Differentially Expressed miRNAs Related to Neural and Glial Activity
Cited by: 74
Author(s): Rachel Waller, Matthew Wyles, Paul R. Heath, Mbombe Kazoka, Helen Wollff, Pamela J. Shaw, Janine Kirby
Software Mentions: 1
Published: over 7 years ago

10.3389/fnins.2017.00702

The Endosomal–Lysosomal Pathway Is Dysregulated by APOE4 Expression in Vivo
Cited by: 85
Author(s): Tal Nuriel, Katherine Y. Peng, Archana Ashok, Allissa Dillman, Helen Y. Figueroa, Justin Apuzzo, Jayanth Ambat, Efrat Levy, Mark Cookson, Paul M. Mathews, Karen Duff
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-021-93107-w

A kinome-centered CRISPR-Cas9 screen identifies activated BRAF to modulate enzalutamide resistance with potential therapeutic implications in BRAF-mutated prostate cancer
Cited by: 6
Author(s): Sander Palit, Jeroen van Dorp, Daniël J. Vis, Cor Lieftink, Simon Linder, Roderick L. Beijersbergen, Andries M. Bergman, Wilbert Zwart, Michiel S. van der Heijden
Software Mentions: 1
Published: about 4 years ago

10.3389/fnins.2021.601850

Suppression of miR-130a-3p Attenuates Oxygen–Glucose Deprivation/Reoxygenation-Induced Dendritic Spine Loss by Promoting APP
Cited by: 4
Author(s): Liang Zhu, Liangliang Zhu, Jinyun Tan, Kui Chen, Bo Yu
Software Mentions: 1
Published: almost 4 years ago

10.3389/fnins.2020.00924

Epilepsy miRNA Profile Depends on the Age of Onset in Humans and Rats
Cited by: 14
Author(s): Jiří Baloun, Petra Bencúrová, Tereza Totkova, Hana Kubová, Markéta Hermanová, Michal Hendrych, Martin Pail, Šárka Pospı́šilová, Milan Brázdil
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-021-93364-9

Transcriptomic analysis of the black tiger shrimp (Penaeus monodon) reveals insights into immune development in their early life stages
Cited by: 5
Author(s): Pacharaporn Angthong, Tanaporn Uengwetwanit, Sopacha Arayamethakorn, Wanilada Rungrassamee
Software Mentions: 1
Published: about 4 years ago

10.1186/s10020-018-0009-6

Analysis of menstrual effluent: diagnostic potential for endometriosis
Cited by: 44
Author(s): Laura Warren, Andrew Shih, Susana Marquez Renteira, Tamer Seckin, Brandon Blau, Kim R. Simpfendorfer, Annette Lee, Christine N. Metz, Peter K. Gregersen
Software Mentions: 1
Published: over 7 years ago

10.1007/s00438-020-01674-w

Disruption of carotene biosynthesis leads to abnormal plastids and variegated leaves in Brassica napus
Cited by: 5
Author(s): Xiaobin Zhao, Kaining Hu, Mei Yan, Bin Yi, Jing Wen, Chaozhi Ma, Tingdong Fu, Jinxing Tu
Software Mentions: 1
Published: over 5 years ago

10.3389/fneur.2021.719354

Integrated Bioinformatics Analysis of Potential mRNA and miRNA Regulatory Networks in Mice With Ischemic Stroke Treated by Electroacupuncture
Cited by: 0
Author(s): Chengyuan Wu, Lijun Zhao, Xinrong Li, Yingshan Xu, Hongji Guo, Zifeng Huang, Qizhang Wang, Helu Liu, Dongfeng Chen, Meiling Zhu
Software Mentions: 1
Published: almost 4 years ago

10.3390/ijms21176295

Immune Modulation of Platelet-Derived Mitochondria on Memory CD4+ T Cells in Humans
Cited by: 15
Author(s): Haibo Yu, Wei Hu, Xiang Song, Yong Zhao
Software Mentions: 1
Published: almost 5 years ago

10.1002/mgg3.1451

<i>NPC1</i> silent variant induces skipping of exon 11 (p.V562V) and unfolded protein response was found in a specific Niemann‐Pick type C patient
Cited by: 5
Author(s): Marisa Encarnação, Maria Francisca Coutinho, Soo Min Cho, Maria Teresa Cardoso, Isaura Ribeiro, Paulo H.M. Chaves, Juliana Inês Santos, Dulce Quelhas, Lúcia Lacerda, Elisa Leão‐Teles, Anthony H. Futerman, Laura Vilarinho, Sandra Alves
Software Mentions: 1
Published: almost 5 years ago

10.3389/fnmol.2020.567084

Lack of Desmin in Mice Causes Structural and Functional Disorders of Neuromuscular Junctions
Cited by: 10
Author(s): Nane Eiber, Franziska Fröb, Mirjam Schowalter, Christian T. Thiel, Christoph S. Clemen, Rolf Schröder, Said Hashemolhosseini
Software Mentions: 1
Published: almost 5 years ago

10.3389/fnmol.2021.616642

Increased Abundance of Nuclear HDAC4 Impairs Neuronal Development and Long-Term Memory
Cited by: 11
Author(s): Patrick Main, Wei Jun Tan, David A. Wheeler, Helen L. Fitzsimons
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-021-93820-6

Physiological and transcriptome analyses for assessing the effects of exogenous uniconazole on drought tolerance in hemp (Cannabis sativa L.)
Cited by: 13
Author(s): Ying Jiang, Yufeng Sun, Dianfeng Zheng, Chengwei Han, Kun Cao, Lei Xu, Shuxia Liu, Yongsong Cao, Naijie Feng
Software Mentions: 1
Published: about 4 years ago

10.3389/fmicb.2019.02070

Listeria monocytogenes σA Is Sufficient to Survive Gallbladder Bile Exposure
Cited by: 6
Author(s): Atsadang Boonmee, Haley F. Oliver, Soraya Chaturongakul
Software Mentions: 1
Published: almost 6 years ago

10.3389/fmicb.2018.02284

Biomarkers for Early Stages of Johne’s Disease Infection and Immunization in Goats
Cited by: 11
Author(s): Aubrey Berry, Chia-Wei Wu, Amanda J. Venturino, Adel M. Talaat
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-021-94113-8

Circulating miRNome of Trachemys scripta after elective gonadectomy under general anesthesia
Cited by: 1
Author(s): Edoardo Bardi, Stefano Brizzola, Giuliano Ravasio, S. Romussi, P. DallʼAra, Valentina Zamarian, Maddalena Arigoni, Raffaele Calogero, Cristina Lecchi
Software Mentions: 1
Published: about 4 years ago

10.3390/molecules25020354

The Effects of Ultraviolet A/B Treatments on Anthocyanin Accumulation and Gene Expression in Dark-Purple Tea Cultivar ‘Ziyan’ (Camellia sinensis)
Cited by: 49
Author(s): Li Wei, Liqiang Tan, Yao Zou, Xiaoqin Tan, Jiacheng Huang, Wei Chen, Qian Tang
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2020.619542

Transcriptomic Basis of Serum Resistance and Virulence Related Traits in XDR P. aeruginosa Evolved Under Antibiotic Pressure in a Morbidostat Device
Cited by: 5
Author(s): Mumina Javed, Benedikt Jentzsch, Maximilian Heinrich, Viola Ueltzhoeffer, Silke Peter, Ulrich Schoppmeier, Angel Angelov, Sandra Schwarz, Matthias Willmann
Software Mentions: 1
Published: over 4 years ago

10.3389/fmicb.2016.00995

Plants Rather than Mineral Fertilization Shape Microbial Community Structure and Functional Potential in Legacy Contaminated Soil
Cited by: 35
Author(s): Jakub Rídl, Michal Kolář, Michal Strejcek, Hynek Strnad, Petr Stursa, Jan Pačes, Tomáš Macek, Ondřej Uhlík
Software Mentions: 1
Published: about 9 years ago

10.1186/s12920-018-0469-0

Regulatory network analysis reveals the oncogenesis roles of feed-forward loops and therapeutic target in T-cell acute lymphoblastic leukemia
Cited by: 6
Author(s): Mengxuan Xia, Qiong Zhang, Mei Luo, Pan Li, Yingxue Wang, Qian Lei, An‐Yuan Guo
Software Mentions: 1
Published: over 6 years ago

10.3389/fmicb.2019.02227

LC-MS-Based Metabolomic Approach Revealed the Significantly Different Metabolic Profiles of Five Commercial Truffle Species
Cited by: 32
Author(s): Xin Li, Xiaoping Zhang, Lei Ye, Zongjing Kang, Dinghong Jia, Yang Lan, Bo Zhang
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-021-94552-3

Transcriptome analysis of flowering regulation by sowing date in Japonica Rice (Oryza sativa L.)
Cited by: 1
Author(s): Min Yin, Hengyu Ma, Wang Meng-jia, Guang Chu, Yuanhui Liu, Chunmei Xu, Xiufu Zhang, Danying Wang, Chen Song
Software Mentions: 1
Published: about 4 years ago

10.1038/s41598-021-94332-z

Context-dependent effects of whole-genome duplication during mammary tumor recurrence
Cited by: 7
Author(s): R. Newcomb, E. Jedediah Dean, Brock J. McKinney, James V. Alvarez
Software Mentions: 1
Published: about 4 years ago

10.3389/fmicb.2021.671852

Small Non-coding RNA Expression Following Respiratory Syncytial Virus or Measles Virus Infection of Neuronal Cells
Cited by: 0
Author(s): Abhijeet Bakre, Catherine Duffy, Hani’ah Abdullah, S. L. Cosby, Ralph A. Tripp
Software Mentions: 1
Published: almost 4 years ago

Projects: bioconductor: DESeq2

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Science Score: 100/100

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Papers Mentioning DESeq2 9,583