bioconductor: DEGseq | Projects | Ecosyste.ms: Papers

10.7717/peerj.7621

Analysis of small RNA changes in different Brassica napus synthetic allopolyploids
Cited by: 6
Author(s): Yunxiao Wei, Fēi Li, Shujiang Zhang, Shifan Zhang, Hui Zhang, Rifei Sun
Software Mentions: 1
Published: about 5 years ago

10.1038/srep46563

Transcriptome profiling of sulfate deprivation responses in two agarophytes Gracilaria changii and Gracilaria salicornia (Rhodophyta)
Cited by: 15
Author(s): Wei-Kang Lee, Parameswari Namasivayam, Janna Ong Abdullah, Chai Ling Ho
Software Mentions: 1
Published: over 7 years ago

10.1111/pbi.12980

The auxin receptor <scp>TIR</scp>1 homolog (Pag<scp>FBL</scp> 1) regulates adventitious rooting through interactions with Aux/<scp>IAA</scp>28 in Populus
Cited by: 46
Author(s): Wenbo Shu, Houjun Zhou, Cheng Jiang, Shutang Zhao, Wang Rui, Quanzi Li, Zhangqi Yang, Andrew Groover
Software Mentions: 1
Published: over 6 years ago

10.1111/pbi.12571

Subgenome‐specific assembly of vitamin E biosynthesis genes and expression patterns during seed development provide insight into the evolution of oat genome
Cited by: 18
Author(s): Juan J. Gutiérrez-González, David F. Garvin
Software Mentions: 1
Published: over 8 years ago

10.1111/pbi.12843

MuMADS1 and MaOFP1 regulate fruit quality in a tomato ovate mutant
Cited by: 24
Author(s): Juhua Liu, Jing Zhang, Jingyi Wang, Jianbin Zhang, Hongxia Miao, Caihong Jia, Zhuo Wang, Biao Xu, Zhiqiang Jin
Software Mentions: 1
Published: about 7 years ago

10.1111/pbi.12533

Small <scp>RNA</scp> and degradome deep sequencing reveals drought‐and tissue‐specific micrornas and their important roles in drought‐sensitive and drought‐tolerant tomato genotypes
Cited by: 129
Author(s): Bilgin Candar-Cakir, Ercan Arıcan, Baohong Zhang
Software Mentions: 1
Published: almost 9 years ago

10.1002/brb3.2272

Candidate <scp>l</scp>‐methionine target piRNA regulatory networks analysis response to cocaine‐conditioned place preference in mice
Cited by: 1
Author(s): Kunlin Zhang, Guanyu Ji, Mei Zhao, Yan Wang
Software Mentions: 1
Published: over 3 years ago

10.1007/s11103-012-9924-z

Large-scale collection and annotation of gene models for date palm (Phoenix dactylifera, L.)
Cited by: 24
Author(s): Guangyu Zhang, Li-Long Pan, Yuxin Yin, Wanfei Liu, Dawei Huang, Tongwu Zhang, Lei Wang, Chengqi Xin, Qiang Lin, Gaoyuan Sun, Mohammed Ba Abdullah, Xiaowei Zhang, Songnian Hu, Ibrahim S. Al-Mssallem, Jun Yu
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pbio.3000696

Rab5c-mediated endocytic trafficking regulates hematopoietic stem and progenitor cell development via Notch and AKT signaling
Cited by: 16
Author(s): Jian Heng, Ping Lv, Yifan Zhang, Xinjie Cheng, Lu Wang, Dongyuan Ma, Feng Liu
Software Mentions: 1
Published: over 4 years ago

10.1038/s41416-019-0608-1

EWS-FLI1-mediated tenascin-C expression promotes tumour progression by targeting MALAT1 through integrin α5β1-mediated YAP activation in Ewing sarcoma
Cited by: 27
Author(s): Shaohui He, Quan Huang, Jinbo Hu, Lei Li, Xiao Ye, Hongyu Yu, Zhitao Han, Ting Wang, Zhou Wang, Haifeng Wei, Jianru Xiao
Software Mentions: 1
Published: about 5 years ago

10.3390/ijms20205057

Identification of miRNAs Involved in Bacillus velezensis FZB42-Activated Induced Systemic Resistance in Maize
Cited by: 13
Author(s): Shanshan Xie, Hengguo Yu, Enze Li, Yu Wang, Juan Liu, Haiyang Jiang
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-017-01357-4

The MAPKKK and MAPKK gene families in banana: identification, phylogeny and expression during development, ripening and abiotic stress
Cited by: 32
Author(s): Lianzhe Wang, Wei Hu, Weiwei Tie, Zehong Ding, Xuezhi Ding, Yang Liu, Yan Yan, Chunlai Wu, Ming Peng, Biao Xu, Zhiqiang Jin
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pgen.1004590

Differential Responses to Wnt and PCP Disruption Predict Expression and Developmental Function of Conserved and Novel Genes in a Cnidarian
Cited by: 44
Author(s): Pascal Lapébie, Antonella Ruggiero, Carine Barreau, Sandra Chevalier, Patrick Chang, Philippe Dru, Evelyn Houliston, Tsuyoshi Momose
Software Mentions: 1
Published: about 10 years ago

10.1186/s13068-020-01831-8

Metabolism, morphology and transcriptome analysis of oscillatory behavior of Clostridium butyricum during long-term continuous fermentation for 1,3-propanediol production
Cited by: 5
Author(s): Junhu Zhou, Jianjian Shen, Xiaoli Wang, Yaqin Sun, Zhilong Xiu
Software Mentions: 1
Published: almost 4 years ago

10.1371/journal.pgen.1004180

An Interspecific Fungal Hybrid Reveals Cross-Kingdom Rules for Allopolyploid Gene Expression Patterns
Cited by: 43
Author(s): Murray P. Cox, Ting Dong, GengGeng Shen, Yogesh Bharat Dalvi, David B. Scott, Austen R. D. Ganley
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pntd.0006343

Host gene expression profiles in ferrets infected with genetically distinct henipavirus strains
Cited by: 17
Author(s): Alberto J. León, Viktoriya Borisevich, Nahal Boroumand, Robert L. Seymour, Rebecca J. Nusbaum, Olivier Escaffre, Luoling Xu, David J. Kelvin, Barry Rockx
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pntd.0004309

Effects of Argentilactone on the Transcriptional Profile, Cell Wall and Oxidative Stress of Paracoccidioides spp.
Cited by: 17
Author(s): Felipe Souto Araújo, Luciene Melo Coelho, Lívia do Carmo Silva, Benedito Rodrigues da Silva Neto, Juliana Alves Parente-Rocha, Alexandre Melo Bailão, Cecília Maria Alves de Oliveira, Gabriel da Rocha Fernandes, Orville Hernández, Juan G. McEwen, Célia Maria de Almeida Soares, Maristela Pereira
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pntd.0002855

Transcriptional and Proteomic Responses to Carbon Starvation in Paracoccidioides
Cited by: 59
Author(s): Patrícia de Sousa Lima, Luciana Casaletti, Alexandre Melo Bailão, Ana Tereza Ribeiro de Vasconcelos, Gabriel da Rocha Fernandes, Célia Maria de Almeida Soares
Software Mentions: 1
Published: over 10 years ago

10.1186/s13068-014-0128-4

Overexpression of the soybean transcription factor GmDof4 significantly enhances the lipid content of Chlorella ellipsoidea
Cited by: 41
Author(s): Jianhui Zhang, Qiang Hao, Lili Bai, Jin Xu, Wei-Bo Yin, Liying Song, Ling Xu, Xuejie Guo, Chengming Fan, Yuhong Chen, Jue Ruan, Shanting Hao, Yuanguang Li, Richard R.‐C. Wang, Zhongliang Hu
Software Mentions: 1
Published: about 10 years ago

10.1186/s13068-020-01813-w

β-Glucosidase genes differentially expressed during composting
Cited by: 7
Author(s): Xinyue Zhang, Bo Ma, Jiawen Liu, Xiehui Chen, Li S, Erlie Su, Liyuan Gao, Hongtao Li
Software Mentions: 1
Published: about 4 years ago

10.1007/s41048-015-0005-0

Transcriptomic analysis of human breast cancer cells reveals differentially expressed genes and related cellular functions and pathways in response to gold nanorods
Cited by: 4
Author(s): Teng Zhou, Yipeng Du, Taotao Wei
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0040028

Novel MicroRNAs Differentially Expressed during Aging in the Mouse Brain
Cited by: 123
Author(s): Sachi Inukai, Alexandre de Lencastre, Michael J. Turner, Frank J. Slack
Software Mentions: 1
Published: over 12 years ago

10.1038/s41598-017-02225-x

Identification and comparative analysis of the ovarian microRNAs of prolific and non-prolific goats during the follicular phase using high-throughput sequencing
Cited by: 23
Author(s): Xiang-Dong Zi, Jing Lü, Lan Ma
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-017-02876-w

Understanding the mechanisms of dormancy in an invasive alien Sycamore lace bug, Corythucha ciliata through transcript and metabolite profiling
Cited by: 27
Author(s): Fengqi Li, Ningning Fu, Cheng Qu, Ran Wang, Yang Xu, Chen Luo
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0096642

Transcriptional Response of Virus-Infected Cassava and Identification of Putative Sources of Resistance for Cassava Brown Streak Disease
Cited by: 74
Author(s): M. N. Maruthi, Sophie Bouvaine, Hale Tufan, Ibrahim Umar Mohammed, R. J. Hillocks
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0107672

Thermal Stress Triggers Broad Pocillopora damicornis Transcriptomic Remodeling, while Vibrio coralliilyticus Infection Induces a More Targeted Immuno-Suppression Response
Cited by: 59
Author(s): Jérémie Vidal-Dupiol, Nolwenn M. Dheilly, Rodolfo Rondon, Christoph Grunau, Céline Cosseau, Kristina M. Smith, Michael Freitag, Mehdi Adjeroud, Guillaume Mitta
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0084292

Secretome Analysis of Human Oligodendrocytes Derived from Neural Stem Cells
Cited by: 21
Author(s): Woo Kyung Kim, Deokhoon Kim, Jun Cui, Ho Hee Jang, Kwang Sei Kim, Hong Jun Lee, Seung Up Kim, Sung‐Min Ahn
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0117507

Identification of Novel miRNAs and miRNA Expression Profiling in Wheat Hybrid Necrosis
Cited by: 14
Author(s): Jianping Zhou, Yan Cheng, Meiqi Yin, Ennian Yang, Wenping Gong, Cheng Liu, Xuelian Zheng, Kejun Deng, Zhenglong Ren, Yong Zhang
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-017-03897-1

Genome-wide analysis of banana MADS-box family closely related to fruit development and ripening
Cited by: 33
Author(s): Juhua Liu, Jing Zhang, Jianbin Zhang, Hongxia Miao, Jingyi Wang, Pengzhao Gao, Wei Hu, Caihong Jia, Zhuo Wang, Biao Xu, Zhiqiang Jin
Software Mentions: 1
Published: over 7 years ago

10.3390/biom11040536

Co-Therapy of Albendazole and Dexamethasone Reduces Pathological Changes in the Cerebral Parenchyma of Th-1 and Th-2 Dominant Mice Heavily Infected with Angiostrongylus cantonensis: Histopathological and RNA-seq Analyses
Cited by: 6
Author(s): Kai-Yuan Jhan, Chien-Ju Cheng, Shih‐Ming Jung, Yi-Jen Lai, Kuang-Yao Chen, Lian-Chen Wang
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pone.0100046

Whole Genome Wide Expression Profiles on Germination of Verticillium dahliae Microsclerotia
Cited by: 25
Author(s): Dongfang Hu, Chunsheng Wang, Fei Tao, Qian Cui, Xiangming Xu, Wenjing Shang, Xiaoping Hu
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0175234

RNA-seq-based analysis of drug-resistant Salmonella enterica serovar Typhimurium selected in vivo and in vitro
Cited by: 7
Author(s): Lin Li, Xingyang Dai, Ying Wang, Yanfei Yang, Xia Zhao, Lei Wang, Ming‐Hua Zeng
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0043592

Characterization and Differential Gene Expression between Two Phenotypic Phase Variants in Salmonella enterica Serovar Typhimurium
Cited by: 15
Author(s): Sheila K. Patterson, Klaudyna Borewicz, Timothy J. Johnson, Wayne Xu, Richard E. Isaacson
Software Mentions: 1
Published: about 12 years ago

10.1038/s41598-017-03937-w

De novo assembly and annotation of the Zhe-Maidong (Ophiopogon japonicus (L.f.) Ker-Gawl) transcriptome in different growth stages
Cited by: 12
Author(s): Huijun Liu, Ying Wang, Tingzhang Wang, Xuhui Ying, Rongrong Wu, Huan Chen
Software Mentions: 1
Published: over 7 years ago

10.1155/2020/2346369

Expression Profiles and Ontology Analysis of Circular RNAs in a Mouse Model of Myocardial Ischemia/Reperfusion Injury
Cited by: 6
Author(s): Zhaoqing Sun, Yasuyuki Takata, Yundi Jiao, Dongxu He, Jiake Wu, Weili Duan, Zhaoqing Sun
Software Mentions: 1
Published: over 4 years ago

10.1155/2020/7461727

Exosomes Derived from Brain Metastatic Breast Cancer Cells Destroy the Blood-Brain Barrier by Carrying lncRNA GS1-600G8.5
Cited by: 54
Author(s): Yunhe Lu, Lei Chen, Liangdong Li, Yiqun Cao
Software Mentions: 1
Published: over 4 years ago

10.1128/AAC.02097-19

Omadacycline Efficacy against Enterococcus faecalis Isolated in China: In Vitro Activity, Heteroresistance, and Resistance Mechanisms
Cited by: 12
Author(s): Qisheng Wang, Zhaoxia Pu, Guangjian Xu, Bing Bai, Zhong Chen, Xinghuai Sun, Jinxin Zheng, Peiyu Li, Di Qu, Qi Deng, Ziming Yu
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pone.0071110

De Novo Transcriptome of Brassica juncea Seed Coat and Identification of Genes for the Biosynthesis of Flavonoids
Cited by: 42
Author(s): Xianjun Liu, Ying Lu, Yuan Yu-hui, Shuyan Liu, Chunyun Guan, Chen She-yuan, Zhongsong Liu
Software Mentions: 1
Published: over 11 years ago

10.1038/s41598-017-05887-9

Transcriptome Analysis of Rice Seedling Roots in Response to Potassium Deficiency
Cited by: 30
Author(s): Xiaoqin Zhang, Hua Jiang, Hua Wang, Jun Cui, Jiahui Wang, Jiang Hu, Longbiao Guo, Qian Qian, Dawei Xue
Software Mentions: 1
Published: over 7 years ago

10.3390/ijms20215419

Genome-Wide Identification of Long Non-coding RNA in Trifoliate Orange (Poncirus trifoliata (L.) Raf) Leaves in Response to Boron Deficiency
Cited by: 14
Author(s): Gaofeng Zhou, Liping Zhang, Bixian Li, Ou Sheng, Qingjiang Wei, Fengxian Yao, Guan Guan, Guidong Liu
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0171451

Transcriptome analysis of hexaploid hulless oat in response to salinity stress
Cited by: 38
Author(s): Bin Wu, Yixin Hu, Pengjie Huo, Qian Zhang, Xin Chen, Sheng Zhang
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0145702

Differential Expression of Hepatic Genes of the Greater Horseshoe Bat (Rhinolophus ferrumequinum) between the Summer Active and Winter Torpid States
Cited by: 15
Author(s): Yanhong Xiao, Yeming Wu, Keping Sun, Hui Wang, Bing Zhang, Shuhui Song, Zhenglin Du, Tinglei Jiang, Limin Shi, Lei Wang, Aiqing Lin, Xinke Yue, Chenji Li, Tingting Chen, Feng Jiang
Software Mentions: 1
Published: almost 9 years ago

10.1155/2021/8112783

A Biological Insight into the Susceptibility to Influenza Infection in Junior Rats by Comprehensive Analysis of lncRNA Profiles
Cited by: 2
Author(s): Fen-Sheng Qiu, Hao-Kun Chen, Hua‐Zhong Ying, Wen-Ying Yu, Mei-Ying Guo, Wenwei Zhou
Software Mentions: 1
Published: over 3 years ago

10.1155/2020/3170927

Differential Expression of Urinary Exosomal Small RNAs in Idiopathic Membranous Nephropathy
Cited by: 12
Author(s): Jinshi Zhang, Yifan Zhu, Ruyi Cai, Juan Jin, Qiang He
Software Mentions: 1
Published: almost 4 years ago

10.1155/2021/6278526

Comprehensive Analysis of the Profiles of Differentially Expressed mRNAs, lncRNAs, and circRNAs in Phosgene-Induced Acute Lung Injury
Cited by: 2
Author(s): Yuchao Shao, Zhongnong Jiang, Daikun He, Jie Shen
Software Mentions: 1
Published: almost 4 years ago

10.1371/journal.pone.0050777

Mechanism Analysis of Acid Tolerance Response of Bifidobacterium longum subsp. longum BBMN 68 by Gene Expression Profile Using RNA-Sequencing
Cited by: 70
Author(s): Junhua Jin, Bing Zhang, Huiyuan Guo, Jian Cui, Lu Jiang, Shuhui Song, Min Sun, Fazheng Ren
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0231117

Plant hormonal changes and differential expression profiling reveal seed dormancy removal process in double dormant plant-herbaceous peony
Cited by: 7
Author(s): Xueting Li, Riwen Fei, Zhijing Chen, Chuanzhu Fan, Xiulan Sun
Software Mentions: 1
Published: over 4 years ago

10.3390/ijms21010180

Comparative Transcriptome Analysis of the Molecular Mechanism of the Hairy Roots of Brassica campestris L. in Response to Cadmium Stress
Cited by: 18
Author(s): Yaping Sun, Qianyun Lu, Yushen Cao, Menghua Wang, Xian Cheng, Qiliang Yan
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pone.0143525

Unusually Large Number of Mutations in Asexually Reproducing Clonal Planarian Dugesia japonica
Cited by: 39
Author(s): Osamu Nishimura, Kazutaka Hosoda, Eri Kawaguchi, Shogo Yazawa, Tetsutaro Hayashi, Takeshi Inoue, Yoshihiko Umesono, Kiyokazu Agata
Software Mentions: 1
Published: about 9 years ago

10.1155/2014/291067

Gonadal Transcriptome Analysis of Male and Female Olive Flounder (Paralichthys olivaceus)
Cited by: 50
Author(s): Zusen Fan, Feng You, Lijuan Wang, Weng Shenda, Zhihao Wu, Jian Hu, Yuxia Zou, Xungang Tan, Peijun Zhang
Software Mentions: 1
Published: almost 11 years ago

10.1186/s12918-018-0548-z

The mRNA and miRNA transcriptomic landscape of Panax ginseng under the high ambient temperature
Cited by: 9
Author(s): Il Bong Jung, Hyejin Kang, Jang Uk Kim, Hyeonsook Chang, Sun Kim, Wi Hoon Jung
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0144927

Global Transcriptome Analysis Reveals Distinct Aluminum-Tolerance Pathways in the Al-Accumulating Species Hydrangea macrophylla and Marker Identification
Cited by: 26
Author(s): Hạixia Chen, LU Chang-ping, Huihui Jiang, Jinhui Peng
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0113724

Transcriptome Analysis on the Inflammatory Cell Infiltration of Nonalcoholic Steatohepatitis in Bama Minipigs Induced by a Long-Term High-Fat, High-Sucrose Diet
Cited by: 26
Author(s): Ji‐Han Xia, Jing Yuan, Leilei Xin, Yuanyuan Zhang, Siyuan Kong, Yaoxing Chen, Shulin Yang, Kui Li
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0036463

High-Throughput Sequencing to Reveal Genes Involved in Reproduction and Development in Bactrocera dorsalis (Diptera: Tephritidae)
Cited by: 56
Author(s): Weiwei Zheng, Tao Peng, Wei He, Hongyu Zhang
Software Mentions: 1
Published: over 12 years ago

10.3390/ijms21041431

Transcriptome Analysis and Identification of Genes Associated with Starch Metabolism in Castanea henryi Seed (Fagaceae)
Cited by: 16
Author(s): Bin Liu, Ru-Qiang Lin, Yuting Jiang, Shuzhen Jiang, Yuan-Fang Xiong, Hui Lian, Qin-Meng Zeng, Xuedie Liu, Zhong‐Jian Liu, Shi-Pin Chen
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-017-13464-3

Insights into grapevine defense response against drought as revealed by biochemical, physiological and RNA-Seq analysis
Cited by: 86
Author(s): Muhammad Salman Haider, Cheng Zhang, Mahantesh Kurjogi, Tariq Pervaiz, Ting Zheng, Chaobo Zhang, Chen Lide, Lingfie Shangguan, Jinggui Fang
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0142542

Transcriptome Analysis of Syringa oblata Lindl. Inflorescence Identifies Genes Associated with Pigment Biosynthesis and Scent Metabolism
Cited by: 33
Author(s): Jian Zheng, Zenghui Hu, Xuelian Guan, Deqiang Dou, Baoqiang Guo, Yu Wang, Yang-Dong Guo, Wei Li, Pei Leng
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-017-14084-7

Analyzing homoeolog expression provides insights into the rediploidization event in gynogenetic hybrids of Carassius auratus red var. × Cyprinus carpio
Cited by: 10
Author(s): Li Ren, Jialin Cui, Jing Wang, Hui Tan, Wuhui Li, Chenchen Tang, Qinbo Qin, Shaojun Liu
Software Mentions: 1
Published: about 7 years ago

10.1186/s12870-021-03106-2

GA3 is superior to GA4 in promoting bud endodormancy release in tree peony (Paeonia suffruticosa) and their potential working mechanism
Cited by: 15
Author(s): Yuxi Zhang, Yuan Yang, Zejun Liu, Zhang Tao, Li Feng, Chunying Liu, Shupeng Gai
Software Mentions: 1
Published: over 3 years ago

10.1186/s12870-016-0898-x

A novel mutant allele of SSI2 confers a better balance between disease resistance and plant growth inhibition on Arabidopsis thaliana
Cited by: 21
Author(s): Wei Yang, Ran Dong, Li Liu, Zhubing Hu, Jing Li, Yong Wang, Xinhua Ding, Chu Zhang
Software Mentions: 1
Published: about 8 years ago

10.1186/s12870-020-02383-7

Transcriptome and metabolome reveal redirection of flavonoids in a white testa peanut mutant
Cited by: 26
Author(s): Ling‐Shu Wan, Yong Lei, Liying Yan, Yue Liu, Manish K. Pandey, Xia Wan, Rajeev K. Varshney, Jiahai Fang, Boshou Liao
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pone.0112320

Transcriptome Sequencing and De Novo Analysis of Cytoplasmic Male Sterility and Maintenance in JA-CMS Cotton
Cited by: 23
Author(s): Peng Yang, Jinfeng Han, Jinling Huang
Software Mentions: 1
Published: about 10 years ago

10.1038/s41598-017-14217-y

Integrated analysis of mRNA and viral miRNAs in the kidney of Carassius auratus gibelio response to cyprinid herpesvirus 2
Cited by: 15
Author(s): Jian-Fei Lu, Dan Xu, Yousheng Jiang, Shanyun Kong, Zhaoyuan Shen, Siyao Xia, Liqun Lu
Software Mentions: 1
Published: about 7 years ago

10.1186/s12870-019-1663-8

Comparative transcriptome analysis reveals K+ transporter gene contributing to salt tolerance in eggplant
Cited by: 23
Author(s): Jing Li, Zhen Gao, Lu Zhou, Linzhi Li, Junhao Zhang, Yang Liu, Huoying Chen
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0146946

Integrative Analysis of the microRNAome and Transcriptome Illuminates the Response of Susceptible Rice Plants to Rice Stripe Virus
Cited by: 49
Author(s): Jian Yang, Fen Zhang, Jing Li, Jianping Chen, Heng-Mu Zhang
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-13988-8

The MAPKKK gene family in cassava: Genome-wide identification and expression analysis against drought stress
Cited by: 28
Author(s): Jianqiu Ye, Hai Yang, Haitao Shi, Yunxie Wei, Weiwei Tie, Zehong Ding, Yan Yan, Ying Luo, Zhiqiang Xia, Wenquan Wang, Ming Peng, Kaimian Li, Zhonghu He, Wei Hu
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0064267

Comparative Transcriptome Profiling Reveals Different Expression Patterns in Xanthomonas oryzae pv. oryzae Strains with Putative Virulence-Relevant Genes
Cited by: 17
Author(s): Fan Zhang, Zhenglin Du, Liying Huang, Casiana Vera Cruz, Yongli Zhou, Zhikang Li
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0064485

De Novo Characterization of Japanese Scallop Mizuhopecten yessoensis Transcriptome and Analysis of Its Gene Expression following Cadmium Exposure
Cited by: 40
Author(s): Xiaolin Meng, Mei Liu, Keyong Jiang, Baojie Wang, Tian Xue, Shengsi Sun, Zhenhua Luo, Chao Qiu, Lei Wang
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0022913

Toward an Understanding of the Molecular Mechanisms of Barnacle Larval Settlement: A Comparative Transcriptomic Approach
Cited by: 71
Author(s): Zhangfan Chen, Keisuke Matsumura, Hao Wang, Shawn M. Arellano, Xingcheng Yan, Intikhab Álam, John Archer, Vladimir B. Bajic, Pei‐Yuan Qian
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0110623

Transcriptome Sequencing and Profiling of Expressed Genes in Phloem and Xylem of Ramie (Boehmeria nivea L. Gaud)
Cited by: 17
Author(s): Jianrong Chen, Fang Liu, Yuxuan Tang, Youmei Yuan, Qingquan Guo
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0139359

Comparative Characterization of Cardiac Development Specific microRNAs: Fetal Regulators for Future
Cited by: 10
Author(s): Yashika Rustagi, Hitesh Kumar Jaiswal, Kamal Rawal, Gopal C. Kundu, Vibha Rani
Software Mentions: 1
Published: about 9 years ago

10.1186/1471-2229-12-38

Chestnut resistance to the blight disease: insights from transcriptome analysis
Cited by: 68
Author(s): Abdelali Barakat, Meg Staton, Cuixia Cheng, Joseph Park, Norzawani M Buang Yassin, Stephen P. Ficklin, Chia-Chun Yeh, Frederick V. Hebard, Kathleen Baier, William A. Powell, Stephan C. Schuster, Nicholas R. Wheeler, Albert G. Abbott, John E. Carlson, Ronald R. Sederoff
Software Mentions: 1
Published: almost 13 years ago

10.1186/s12870-018-1458-3

Molecular mechanism of the extended oil accumulation phase contributing to the high seed oil content for the genotype of tung tree (Vernicia fordii)
Cited by: 8
Author(s): Lingling Zhang, Pan Wu, Wenying Lu, Shiyou Lü
Software Mentions: 1
Published: about 6 years ago

10.18632/aging.202704

Licochalcone A improves the cognitive ability of mice by regulating T- and B-cell proliferation
Cited by: 5
Author(s): Yougui Wu, Jianbo Zhu, Haifeng Liu, Hailiang Liu
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pone.0128659

De novo Transcriptome Analysis of Portunus trituberculatus Ovary and Testis by RNA-Seq: Identification of Genes Involved in Gonadal Development
Cited by: 64
Author(s): Xianliang Meng, Ping Liu, Jia Fu, Jian Li, Bingbo Gao
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-017-18990-8

Transcriptome analysis reveals carbohydrate-mediated liver immune responses in Epinephelus akaara
Cited by: 26
Author(s): Yunxia Yang, Tao Han, Jia Xiao, Xinyu Li, Jiteng Wang
Software Mentions: 1
Published: almost 7 years ago

10.1186/s12870-017-0990-x

De novo sequencing and comparative transcriptome analysis of the male and hermaphroditic flowers provide insights into the regulation of flower formation in andromonoecious Taihangia rupestris
Cited by: 14
Author(s): Weiguo Li, Lihui Zhang, Zhan Ding, Wang Guo-dong, Yandi Zhang, Hongmei Gong, Tianjun Chang, Zhang YanWen
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0086821

Identification and Characterization of MicroRNAs in Ovary and Testis of Nile Tilapia (Oreochromis niloticus) by Using Solexa Sequencing Technology
Cited by: 66
Author(s): Jun Xiao, Huan Zhong, Yi Zhou, Fan Yu, Yun Gao, Yang Luo, Zhongjie Tang, Zekun Guo, Guo EnYan, Gan Xi, Ming Zhang, Yaping Zhang
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0112722

De novo Assembly of the Grass Carp Ctenopharyngodon idella Transcriptome to Identify miRNA Targets Associated with Motile Aeromonad Septicemia
Cited by: 25
Author(s): Xiaoyan Xu, Yubang Shen, Jianjun Fu, Liqun Lu, Jiale Li
Software Mentions: 1
Published: about 10 years ago

10.1186/s12870-017-1091-6

Comparative transcriptome analysis reveals differentially expressed genes associated with sex expression in garden asparagus (Asparagus officinalis)
Cited by: 28
Author(s): Shufen Li, Guojun Zhang, Xuejin Zhang, Jinhong Yuan, Chuan‐Liang Deng, Wu‐Jun Gao
Software Mentions: 1
Published: over 7 years ago

10.1186/s12870-016-0934-x

Comparative transcriptome profiling of the fertile and sterile flower buds of a dominant genic male sterile line in sesame (Sesamum indicum L.)
Cited by: 18
Author(s): Hongyan Liu, Tan Ming, Haijuan Yu, Li Liang, Fang Zhou, Ming Yang, Ting Zhou, Yingzhong Zhao
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0181378

Analysis of the differential gene and protein expression profile of the rolled leaf mutant of transgenic rice (Oryza sativa L.)
Cited by: 5
Author(s): Zhu Qiuqiang, Shu-Guang Yu, Guanshui Chen, Lanlan Ke, Pan Dong-ming
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0016516

A Comparative Transcriptomic Analysis of Uveal Melanoma and Normal Uveal Melanocyte
Cited by: 26
Author(s): Jianhong An, Haolei Wan, Xiangtian Zhou, Dan‐Ning Hu, Ledan Wang, Lili Hao, Dongsheng Yan, Fanjun Shi, Zhongxin Zhou, Jiao Wang, Songnian Hu, Jun Yu, Jia Qu
Software Mentions: 1
Published: almost 14 years ago

10.1186/s12870-020-02585-z

Genome-wide sRNA and mRNA transcriptomic profiling insights into dynamic regulation of taproot thickening in radish (Raphanus sativus L.)
Cited by: 7
Author(s): Yang Xie, Jiali Ying, Liang Xu, Yan Wang, Junhui Dong, Yinglong Chen, Mingjia Tang, Cui Li, Everlyne M. Muleke, Liwang Liu
Software Mentions: 1
Published: over 4 years ago

10.1186/s12870-017-1093-4

The core regulatory network of the abscisic acid pathway in banana: genome-wide identification and expression analyses during development, ripening, and abiotic stress
Cited by: 38
Author(s): Wei Hu, Yan Yan, Haitao Shi, Juhua Liu, Hongxia Miao, Weiwei Tie, Zehong Ding, Xuezhi Ding, Chunlai Wu, Yang Liu, Jiashui Wang, Biao Xu, Zhiqiang Jin
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0245933

Study on the region-specific expression of epididymis mRNA in the rams
Cited by: 7
Author(s): Chunli Wu, Chunxin Wang, Bo Zhai, Yongju Zhao, Zhuo Zhao, Zhiyu Yuan, Xuefeng Fu, Mingxin Zhang
Software Mentions: 1
Published: almost 4 years ago

10.1371/journal.pone.0111982

RNA-Seq Analysis and De Novo Transcriptome Assembly of Jerusalem Artichoke (Helianthus tuberosus Linne)
Cited by: 21
Author(s): Won Yong Jung, Sang Sook Lee, Chul Wook Kim, Hyun-Soon Kim, Sung Ran Min, Jae Sun Moon, Suk‐Yoon Kwon, Jun Ho Jeon, Hye Sun Cho
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0093560

Whole Genome and Global Gene Expression Analyses of the Model Mushroom Flammulina velutipes Reveal a High Capacity for Lignocellulose Degradation
Cited by: 100
Author(s): Youngjin Park, Jeong Hun Baek, Seonwook Lee, Changhoon Kim, Hwanseok Rhee, Hyungtae Kim, Jeong‐Sun Seo, Hae‐Ran Park, Dae-Eun Yoon, Jae Do Nam, Hong-Il Kim, Jong-Guk Kim, Hye-Kyung Yoon, Hee‐Wan Kang, Jae-Yong Cho, Eun-Sung Song, Gi‐Ho Sung, Young‐Bok Yoo, Chang‐Soo Lee, Byoung-Moo Lee, Won-Sik Kong
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0116406

Transcriptome Sequencing and Characterization of Japanese Scallop Patinopecten yessoensis from Different Shell Color Lines
Cited by: 45
Author(s): Jun Ding, Li-Jun Zhao, Yaqing Chang, Wenming Zhao, Zhenlin Du, Zhenlin Hao
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0095986

Cytokine Diversity in the Th1-Dominated Human Anti-Influenza Response Caused by Variable Cytokine Expression by Th1 Cells, and a Minor Population of Uncommitted IL-2+IFNγ- Thpp Cells
Cited by: 22
Author(s): Nan Deng, Jason M. Weaver, Tim R. Mosmann
Software Mentions: 1
Published: over 10 years ago

10.1186/s12870-016-0903-4

Strand-specific RNA-Seq transcriptome analysis of genotypes with and without low-phosphorus tolerance provides novel insights into phosphorus-use efficiency in maize
Cited by: 37
Author(s): Qingguo Du, Kai Wang, Cheng Xu, Cheng Zou, Chuanxiao Xie, Yunbi Xu, Wenxue Li
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0053617

Comparative Analysis of the Transcriptome in Tissues Secreting Purple and White Nacre in the Pearl Mussel Hyriopsis cumingii
Cited by: 75
Author(s): Zhiyi Bai, Hanfeng Zheng, Jing-Yun Lin, Guiling Wang, Jiale Li
Software Mentions: 1
Published: almost 12 years ago

10.1038/s41598-018-25271-5

Transcription Elongation Factor GreA Plays a Key Role in Cellular Invasion and Virulence of Francisella tularensis subsp. novicida
Cited by: 9
Author(s): Guolin Cui, Jun Wang, Xinyi Qi, Jingliang Su
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0140499

Differential Regulation of Gene and Protein Expression by Zinc Oxide Nanoparticles in Hen’s Ovarian Granulosa Cells: Specific Roles of Nanoparticles
Cited by: 29
Author(s): Yong Zhao, Lan Li, Peng-Fei Zhang, Wei Shen, Jing Liu, Fenfang Yang, Hongbo Liu, Zhihui Hao
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0123245

MicroRNA-Like Small RNAs Prediction in the Development of Antrodia cinnamomea
Cited by: 24
Author(s): Yen‐Ting Lin, Li‐Ting Ma, Yi-Ru Lee, Shih-Shun Lin, Sheng-Yang Wang, Tun-Tschu Chang, Jei‐Fu Shaw, Wen-Hsiung Li, Fang-Hua Chu
Software Mentions: 1
Published: over 9 years ago

10.1155/2021/7184760

The Effects of Dandelion Polysaccharides on Iron Metabolism by Regulating Hepcidin via JAK/STAT Signaling Pathway
Cited by: 13
Author(s): Feng Ren, Yingying Yang, Kaixuan Wu, Tiesuo Zhao, Yinghao Shi, Moxuan Song, Jian Li
Software Mentions: 1
Published: almost 4 years ago

10.1186/s12870-019-2189-9

MicroRNA-mRNA expression profiles and their potential role in cadmium stress response in Brassica napus
Cited by: 36
Author(s): Ying Fu, Annaliese S. Mason, Yaofeng Zhang, Baogang Lin, Meili Xiao, Donghui Fu, Han‐Qing Yu
Software Mentions: 1
Published: almost 5 years ago

Projects: bioconductor: DEGseq

Papers Mentioning DEGseq 697