Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: bioconductor: DEGseq

https://packages.ecosyste.ms/registries/bioconductor.org/packages/DEGseq

Identify Differentially Expressed Genes from RNA-seq data
1 version
Latest release: about 1 year ago
96,712 downloads total

Papers Mentioning DEGseq 697

10.3390/genes11010015
A New Insight into Flowering Regulation: Molecular Basis of Flowering Initiation in Magnolia × soulangeana ‘Changchun’
Cited by: 11
Author(s): Zheng Jiang, Liyong Sun, Qiang Wei, Ye Ju, Xuan Zou, Xiaoxia Wan, Xu Liu, Zengfang Yin
Software Mentions: 1
Published: almost 5 years ago
10.1186/s12863-017-0485-7
Comparative profiling of hepatopancreas transcriptomes in satiated and starving Pomacea canaliculata
Cited by: 9
Author(s): Lei Yang, Tao Cheng, Fengjiao Zhao
Software Mentions: 1
Published: over 7 years ago
10.3390/genes11020187
Metabolome and Transcriptome Analysis of Hexaploid Solidago canadensis Roots Reveals its Invasive Capacity Related to Polyploidy
Cited by: 12
Author(s): Miao Wu, Yimeng Ge, Xu Chen, Jianbo Wang
Software Mentions: 1
Published: almost 5 years ago
10.1186/s13018-020-01677-8
Deciphering the potential pharmaceutical mechanism of Guzhi Zengsheng Zhitongwan on rat bone and kidney based on the “kidney governing bone” theory
Cited by: 3
Author(s): Baojin Yao, Jia Liu, Mei Zhang, Xiangyang Leng, Daqing Zhao
Software Mentions: 1
Published: over 4 years ago
10.1186/s12864-016-2532-6
RNA sequencing to characterize transcriptional changes of sexual maturation and mating in the female oriental fruit fly Bactrocera dorsalis
Cited by: 20
Author(s): Weiwei Zheng, Deye Luo, Fensheng Wu, Jialu Wang, Hongyu Zhang
Software Mentions: 1
Published: over 8 years ago
10.1186/1471-2164-12-552
Exploring the gonad transcriptome of two extreme male pigs with RNA-seq
Cited by: 83
Author(s): Anna Esteve‐Codina, Robert Kofler, Nicola Palmieri, Giovanni Bussotti, Cédric Notredame, Miguel Pérez‐Enciso
Software Mentions: 1
Published: about 13 years ago
10.18632/genesandcancer.216
Pairwise correlation of genes involved in glucose metabolism: a potential diagnostic marker of cancer?
Cited by: 3
Author(s): Meena Kishore Sakharkar, Karthic Rajamanickam, Shaoping Ji, Sarinder Kaur Dhillon, Jian Yang
Software Mentions: 1
Published: over 3 years ago
10.1590/1678-4685-GMB-2015-0327
Gene expression analysis reveals important pathways for drought response in leaves and roots of a wheat cultivar adapted to rainfed cropping in the Cerrado biome
Cited by: 22
Author(s): Poersch-Bortolon Lb, Pereira Jf, A. Nhani, Gonzáles Hh, Torres Ga, Luciano Consoli, Arenhart Ra, Bodanese-Zanettini Mh, Márcia Margis‐Pinheiro
Software Mentions: 1
Published: about 8 years ago
10.1186/s12864-019-6022-5
Candidates for chemosensory genes identified in the Chinese citrus fly, Bactrocera minax, through a transcriptomic analysis
Cited by: 17
Author(s): Zhongzhen Wu, CongBao Kang, Meng-Qiu Qu, Junlong Chen, Ming‐Shun Chen, Shuying Bin, Jintian Lin
Software Mentions: 1
Published: over 5 years ago
10.1186/s13059-019-1848-3
Pharmacogenomic analysis of patient-derived tumor cells in gynecologic cancers
Cited by: 14
Author(s): K. Jason, Jae Ryoung Hwang, Young Jae Cho, Ji Yoon Ryu, Ji Yoon Choi, Seri Jeong, Jihye Kim, Myeong Seon Kim, E Sun Paik, Yoo-Young Lee, Chel Hun Choi, Tae Joong Kim, Byoung Gie Kim, Duk Soo Bae, Yeri Lee, Nam Gu Her, Yong Jae Shin, Hee Jin Cho, Ja Yeon Kim, Yun Jee Seo, Harim Koo, Jeong Woo Oh, Taebum Lee, Hyun Soo Kim, Sang Yong Song, Joon Seol Bae, Woong-Yang Park, Hee Dong Han, Hyung Jun Ahn, Anil K. Sood, Raúl Rabadán, Jin Ku Lee, Do Hyun Nam, Jeong Won Lee
Software Mentions: 1
Published: almost 5 years ago
10.1186/s12864-020-6698-6
Transcriptomic analysis of sea cucumber (Holothuria leucospilota) coelomocytes revealed the echinoderm cytokine response during immune challenge
Cited by: 9
Author(s): Xiaofen Wu, Ting Chen, Da Huo, Zonghe Yu, Yao Ruan, Chuhang Cheng, Xiao Jiang, Chen Ren
Software Mentions: 1
Published: over 4 years ago
10.1186/s13059-020-02140-x
Transcriptional regulatory networks of tumor-associated macrophages that drive malignancy in mesenchymal glioblastoma
Cited by: 68
Author(s): K. Jason, Nakho Chang, Hye Won Lee, Hee Jin Cho, Michele Ceccarelli, Luigi Cerulo, Jinlong Yin, Sung Soo Kim, Francesca Pia Caruso, Mijeong Lee, Donggeon Kim, Young Taek Oh, Yeri Lee, Nam Gu Her, Byeongkwi Min, Hye Jin Kim, Da Eun Jeong, Hye Mi Kim, Hyunho Kim, Seok Chung, Hyun Goo Woo, Jeongwu Lee, Doo Sik Kong, Ho Jun Seol, Jung Il Lee, Jin-Ho Kim, Woong-Yang Park, Qianghu Wang, Erik P. Sulman, Amy B. Heimberger, Michael Lim, Jong Bae Park, Antonio Iavarone, Roel G.W. Verhaak, Do Hyun Nam
Software Mentions: 1
Published: about 4 years ago
10.1186/s13073-020-0717-8
Comprehensive pharmacogenomic characterization of gastric cancer
Cited by: 16
Author(s): K. Jason, Jung Yong Hong, In Kyoung Lee, Ju Sun Kim, Moon Hee Sim, Ha Jung Kim, Ji Yeong An, Tae Sung Sohn, Woo Jung Lee, Jae Moon Bae, Sung Kim, Se Hoon Park, Joon Oh Park, Ho Yeong Lim, Won Ki Kang, Nam Gu Her, Yeri Lee, Hee Jin Cho, Yong Jae Shin, Misuk Kim, Harim Koo, Min-Ju Kim, Yun Jee Seo, Ja Yeon Kim, Min Gew Choi, Do Hyun Nam, Jeeyun Lee
Software Mentions: 1
Published: almost 5 years ago
10.1186/s12861-020-00213-5
The functions of ocu-miR-205 in regulating hair follicle development in Rex rabbits
Cited by: 13
Author(s): Gongyan Liu, Shu Li, Hongli Liu, Yanli Zhu, Liya Bai, Haitao Sun, Shuxia Gao, Wenxue Jiang, Fuchang Li
Software Mentions: 1
Published: over 4 years ago
10.1093/gigascience/giy113
Comparative genomics and transcriptomics of Chrysolophus provide insights into the evolution of complex plumage colouration
Cited by: 10
Author(s): Guang Gao, Meng Xu, Chunling Bai, Yulan Yang, Guangpeng Li, Junyang Xu, Zhuying Wei, Min Jiang, Guanghua Su, Xianqiang Zhou, Jun Guo, Hao Yu, Guiping Zhang, Xukui Yang, Xiaomin Xu, Randall B. Widelitz, Cheng‐Ming Chuong, Chi Zhang, Jun Yin, Yongchun Zuo
Software Mentions: 1
Published: about 6 years ago
10.1093/gigascience/giz016
The genomic basis for colonizing the freezing Southern Ocean revealed by Antarctic toothfish and Patagonian robalo genomes
Cited by: 42
Author(s): Liangbiao Chen, Ying Lu, Wenhao Li, Yandong Ren, Mengchao Yu, Shouwen Jiang, Yanhong Fu, Jian Wang, Syd S. Peng, Kevin T. Bilyk, Katherine R. Murphy, Xuan Zhuang, Mathias Hüne, Wanying Zhai, Wen Wang, Qianghua Xu, C.‐H. Christina Cheng
Software Mentions: 1
Published: almost 6 years ago
10.1186/s41065-019-0090-z
Transcriptome profiling of the fertile parent and sterile hybrid in tea plant flower buds
Cited by: 5
Author(s): Linbo Chen, Hao Qu, Lifei Xia, Yue Liu, Hong-Yan Jiang, Yanxia Sun, Liang MingZhi, Changjun Jiang
Software Mentions: 1
Published: over 5 years ago
10.3390/ijms17122043
Comparison of Small RNA Profiles of Glycine max and Glycine soja at Early Developmental Stages
Cited by: 6
Author(s): Yuzhe Sun, Zeta Mui, Xuan Li, Aldrin Kay-Yuen Yim, Hao Qin, Fuk Ling Wong, Ting‐Fung Chan, Siu Ming Yiu, Hon‐Ming Lam, Boon Leong Lim
Software Mentions: 1
Published: almost 8 years ago
10.3390/ijms18020234
RNA-Seq Analyses for Two Silkworm Strains Reveals Insight into Their Susceptibility and Resistance to Beauveria bassiana Infection
Cited by: 17
Author(s): Dongxu Xing, Qiong Yang, Liang Jiang, Qingrong Li, Yang Xiao, Mingqiang Ye, Qingyou Xia
Software Mentions: 1
Published: almost 8 years ago
10.3390/ijms18081581
The AGPase Family Proteins in Banana: Genome-Wide Identification, Phylogeny, and Expression Analyses Reveal Their Involvement in the Development, Ripening, and Abiotic/Biotic Stress Responses
Cited by: 31
Author(s): Hongxia Miao, Ping Sun, Qing Liu, Juhua Liu, Biao Xu, Zhiqiang Jin
Software Mentions: 1
Published: over 7 years ago
10.3390/insects10120430
Potential Pathways and Genes Involved in Lac Synthesis and Secretion in Kerria chinensis (Hemiptera: Kerriidae) Based on Transcriptomic Analyses
Cited by: 5
Author(s): Weiwei Wang, Pengfei Liu, Qin Lu, Xiaofei Ling, Zhang Jin-wen, Ming‐Shun Chen, Hang Chen, Xiaoming Chen
Software Mentions: 1
Published: almost 5 years ago
10.1186/s12906-021-03240-2
The enzymatic hydrolysates from deer sinew promote MC3T3-E1 cell proliferation and extracellular matrix synthesis by regulating multiple functional genes
Cited by: 7
Author(s): Zhenwei Zhou, Deyu Zhao, Pengcheng Zhang, Mei Zhang, Xiangyang Leng, Baojin Yao
Software Mentions: 1
Published: almost 4 years ago
10.3390/insects12030226
Comparative Transcriptomic Analysis of Riptortus pedestris (Hemiptera: Alydidae) to Characterize Wing Formation across All Developmental Stages
Cited by: 5
Author(s): Siying Fu, Yujie Duan, Siqi Wang, Yipeng Ren, Wenjun Bu
Software Mentions: 1
Published: over 3 years ago
10.3390/insects12080739
Comparative Transcriptome Analysis Reveals bmo-miR-6497-3p Regulate Circadian Clock Genes during the Embryonic Diapause Induction Process in Bivoltine Silkworm
Cited by: 1
Author(s): Lulu Liu, Zhiyong Pan, Qiang Gao, Xiaoge Feng, Lan Han, Fengbin Zhang, Yanmin Bai, Minjin Han, Hai Hu, Fangyin Dai, Zhang Gao-jun, Xiaoling Tong
Software Mentions: 1
Published: over 3 years ago
10.1186/1471-2164-14-541
Genome-wide transcriptional response of Trichoderma reesei to lignocellulose using RNA sequencing and comparison with Aspergillus niger
Cited by: 85
Author(s): Laure Nicolas Annick Ries, Steven T. Pullan, Stéphane Delmas, Sunir Malla, Martin Blythe, David B. Archer
Software Mentions: 1
Published: over 11 years ago
10.1186/s40104-018-0292-7
A genome-wide landscape of mRNAs, lncRNAs, and circRNAs during subcutaneous adipogenesis in pigs
Cited by: 45
Author(s): Xin Liu, Kaiqing Liu, Baosen Shan, Song Wei, Dongfeng Li, Hui Han, Wei Wei, Jie Chen, Honglin Liu, Lifan Zhang
Software Mentions: 1
Published: about 6 years ago
10.1128/JB.00219-17
PhoU2 but Not PhoU1 as an Important Regulator of Biofilm Formation and Tolerance to Multiple Stresses by Participating in Various Fundamental Metabolic Processes in Staphylococcus epidermidis
Cited by: 22
Author(s): Xiaofei Wang, Haiyan Han, Zhihui Lv, Qisheng Wang, Yongpeng Shang, Tao Xu, Yang Wu, Ying Zhang, Di Qu
Software Mentions: 1
Published: almost 7 years ago
10.1186/s12864-019-6111-5
Small RNA and degradome deep sequencing reveal respective roles of cold-related microRNAs across Chinese wild grapevine and cultivated grapevine
Cited by: 13
Author(s): Pengfei Wang, Yang Yang, Hongmei Shi, Yongmei Wang, Fengshan Ren
Software Mentions: 1
Published: about 5 years ago
10.3390/ijms19010160
Transcriptome Analysis of Flounder (Paralichthys olivaceus) Gill in Response to Lymphocystis Disease Virus (LCDV) Infection: Novel Insights into Fish Defense Mechanisms
Cited by: 26
Author(s): Ronghua Wu, Xiuzhen Sheng, Xiaoqian Tang, Jing Xing, Wenbin Zhan
Software Mentions: 1
Published: almost 7 years ago
10.1186/s12864-015-1873-x
De novo transcriptome sequencing and comprehensive analysis of the drought-responsive genes in the desert plant Cynanchum komarovii
Cited by: 35
Author(s): Xueqing Ma, Ping Wang, Sihong Zhou, Yipeng Sun, Nana Liu, Xiaoning Li, Yuxia Hou
Software Mentions: 1
Published: about 9 years ago
10.1111/jcmm.16278
The phenotypic and functional study of tissue B cells in respiratory system provided important information for diseases and development of vaccines
Cited by: 3
Author(s): Fan Li, Qiongli Wu, Shuangpeng Kang, Baofeng Yang, Changyou Wu
Software Mentions: 1
Published: almost 4 years ago
10.1111/jcmm.16721
Deletion of the miR‐25/93/106b cluster induces glomerular deposition of immune complexes and renal fibrosis in mice
Cited by: 4
Author(s): Hongchuang Ma, Xiang Li, Shanshan Yu, Yanling Hu, Meixiang Yin, Fubin Zhu, Licheng Xu, Tianhe Wang, Huiyan Wang, Lipeng Zhang, Binghai Zhao, Yadong Huang
Software Mentions: 1
Published: over 3 years ago
10.1002/jcla.23099
Expression profiling and bioinformatics analysis of circulating microRNAs in patients with acute myocardial infarction
Cited by: 13
Author(s): Zhixiong Zhong, Heming Wu, Wei Zhong, Zuo‐Feng Zhang, Zhikang Yu
Software Mentions: 1
Published: about 5 years ago
10.1093/jxb/erx311
A genome-wide survey with different rapeseed ecotypes uncovers footprints of domestication and breeding
Cited by: 38
Author(s): Dongfeng Wei, Yixin Cui, Ying He, Qing Xiong, Lunwen Qian, Chaobo Tong, Guangyuan Lu, Yijuan Ding, Jiana Li, Christian Jung, Wei Qian
Software Mentions: 1
Published: about 7 years ago
10.1186/s12885-015-1295-9
ACTN4 and the pathways associated with cell motility and adhesion contribute to the process of lung cancer metastasis to the brain
Cited by: 30
Author(s): Yufei Gao, LI Guang-hu, Lei Sun, Yichun He, Xiaoyan Li, Zhi Sun, Jihan Wang, Yang Jiang, Jingwei Shi
Software Mentions: 1
Published: over 9 years ago
10.1186/s12896-021-00716-4
Bacteriostatic effects of benzyl isothiocyanate on Vibrio parahaemolyticus: Transcriptomic analysis and morphological verification
Cited by: 4
Author(s): Jianan Liu, Ke Zhang, Jie Song, Hongyan Wu, Hongshun Hao, Jingran Bi, Hongman Hou, Gongliang Zhang
Software Mentions: 1
Published: about 3 years ago
10.1371/journal.ppat.1003102
Altered Immunity in Crowded Locust Reduced Fungal (Metarhizium anisopliae) Pathogenesis
Cited by: 75
Author(s): Yundan Wang, Pengcheng Yang, Feng Cui, Le Kang
Software Mentions: 1
Published: almost 12 years ago
10.1371/journal.ppat.1004931
A Critical Role for CLSP2 in the Modulation of Antifungal Immune Response in Mosquitoes
Cited by: 53
Author(s): Yanhong Wang, Huanming Yang, Longsheng Xing, Hong Jiang, Songnian Hu, Alexander S. Raikhel, Zhen Zou
Software Mentions: 1
Published: over 9 years ago
10.1098/rspb.2012.1952
Aphids evolved novel secreted proteins for symbiosis with bacterial endosymbiont
Cited by: 65
Author(s): Shuji Shigenobu, David L. Stern
Software Mentions: 1
Published: almost 12 years ago
10.3390/ijms19030675
Key Anti-Fibrosis Associated Long Noncoding RNAs Identified in Human Hepatic Stellate Cell via Transcriptome Sequencing Analysis
Cited by: 13
Author(s): Xianqian Li, Zhenxing Ren, Ke Li, Jingjing Huang, Zitong Huang, Tianran Zhou, Hongying Cao, Fengxue Zhang, Bo Tan
Software Mentions: 1
Published: over 6 years ago
10.1098/rsos.191052
Induction, identification and genetics analysis of tetraploid <i>Actinidia chinensis</i>
Cited by: 9
Author(s): Shengxing Li, Xiaozhen Liu, Huiming Liu, Xianang Zhang, Qinxia Ye, Hanyao Zhang
Software Mentions: 1
Published: about 5 years ago
10.1186/1471-2164-15-571
RNA-Seq for gene identification and transcript profiling of three Stevia rebaudiana genotypes
Cited by: 54
Author(s): Junwen Chen, Kai Hou, Peng Qin, Hongchang Liu, Bin Yi, Wenting Yang, Wei Wu
Software Mentions: 1
Published: over 10 years ago
10.1007/s43032-019-00095-4
Nicotine Suppresses the Invasiveness of Human Trophoblasts by Downregulation of CXCL12 Expression through the Alpha-7 Subunit of the Nicotinic Acetylcholine Receptor
Cited by: 7
Author(s): Jing Chen, Min Qu, Zirui Huang, Jimei Chen, Chunmei Zhou, Fengzhen Han, Yanji Qu, Sheng Wang, Jian Zhuang, Xiaohong Li
Software Mentions: 1
Published: almost 5 years ago
10.3390/ijms19041209
Comparative microRNA-seq Analysis Depicts Candidate miRNAs Involved in Skin Color Differentiation in Red Tilapia
Cited by: 38
Author(s): Lanmei Wang, Wenbin Zhu, Zaijie Dong, Fei Song, Juanjuan Dong, Jianjun Fu
Software Mentions: 1
Published: over 6 years ago
10.1186/s12931-021-01770-4
Ameliorative effects of eosinophil deficiency on immune response, endoplasmic reticulum stress, apoptosis, and autophagy in fungus-induced allergic lung inflammation
Cited by: 6
Author(s): Sijiao Wang, Zhilong Jiang, Liyang Li, Jun Zhang, Cuiping Zhang, Chen Shao
Software Mentions: 1
Published: over 3 years ago
10.3390/jpm11010024
Personalized beyond Precision: Designing Unbiased Gold Standards to Improve Single-Subject Studies of Personal Genome Dynamics from Gene Products
Cited by: 2
Author(s): Samir Rachid Zaim, Colleen Kenost, Hao Helen Zhang, Yves A. Lussier
Software Mentions: 1
Published: almost 4 years ago
10.1186/s12284-021-00507-7
G protein γ subunit qPE9-1 is involved in rice adaptation under elevated CO2 concentration by regulating leaf photosynthesis
Cited by: 5
Author(s): Ke Wang, Feiyun Xu, Wei Yuan, Leyun Sun, Shaoxian Wang, Mehtab Muhammad Aslam, Jianhua Zhang, Weifeng Xu
Software Mentions: 1
Published: over 3 years ago
10.1038/srep08192
Aberrant expression of maternal Plk1 and Dctn3 results in the developmental failure of human in-vivo- and in-vitro-matured oocytes
Cited by: 9
Author(s): Yong Fan, Haiquan Zhao, Jianqiao Liu, Tao Tan, Ting Ding, Rong Li, Yue Zhao, Jie Yan, Xiaofang Sun, Yang Yu, Jie Qiao
Software Mentions: 1
Published: almost 10 years ago
10.1038/srep14582
Integrative analyses reveal transcriptome-proteome correlation in biological pathways and secondary metabolism clusters in A. flavus in response to temperature
Cited by: 76
Author(s): Youhuang Bai, Sen Wang, Hong Zhong, Qi Yang, Na Zhang, Zhuang Zhang, Jun Yuan, Xiaowei Nie, Shihua Wang
Software Mentions: 1
Published: about 9 years ago
10.3390/ijms19103108
Overexpression of a Novel ROP Gene from the Banana (MaROP5g) Confers Increased Salt Stress Tolerance
Cited by: 21
Author(s): Hongxia Miao, Ping Sun, Juhua Liu, Jingyi Wang, Biao Xu, Zhiqiang Jin
Software Mentions: 1
Published: about 6 years ago
10.3390/ijms19113324
Integrated Analysis of Transcriptomic and Proteomics Data Reveals the Induction Effects of Rotenoid Biosynthesis of Mirabilis himalaica Caused by UV-B Radiation
Cited by: 3
Author(s): Li Gu, Weilie Zheng, Mingjie Li, Quan Hong, Jianming Wang, Fengji Wang, Wei Huang, Yunfang Wu, Xiaozhong Lan, Zhongyi Zhang
Software Mentions: 1
Published: about 6 years ago
10.1038/srep19405
Transcriptome assembly and expression profiling of molecular responses to cadmium toxicity in hepatopancreas of the freshwater crab Sinopotamon henanense
Cited by: 60
Author(s): Min Sun, Yi Ting Li, Yang Liu, Shao Chin Lee, Lan Wang
Software Mentions: 1
Published: almost 9 years ago
10.1038/srep20188
Subgroup J avian leukosis virus infection of chicken dendritic cells induces apoptosis via the aberrant expression of microRNAs
Cited by: 28
Author(s): Di Liu, Manman Dai, Zhengping Xu, Weijun Cao, Ming Liao
Software Mentions: 1
Published: almost 9 years ago
10.3390/ijms20020389
Regulatory Effect of Bacillus subtilis on Cytokines of Dendritic Cells in Grass Carp (Ctenopharyngodon Idella)
Cited by: 12
Author(s): Chengcong Zhou, Hui Wang, Xige Li, Yikai Luo, Mengqi Xie, Zhixin Wu, Xiaoxuan Chen
Software Mentions: 1
Published: almost 6 years ago
10.3390/ijms20061359
Comparative Transcriptome Combined with Proteome Analyses Revealed Key Factors Involved in Alfalfa (Medicago sativa) Response to Waterlogging Stress
Cited by: 22
Author(s): Ningbo Zeng, Zhijian Yang, Zhifei Zhang, Longxing Hu, Liang Chen
Software Mentions: 1
Published: over 5 years ago
10.1038/srep25929
The developmental effects of pentachlorophenol on zebrafish embryos during segmentation: A systematic view
Cited by: 16
Author(s): Ting Xu, Jing Zhao, Zhifa Xu, Ruijie Pan, Daqiang Yin
Software Mentions: 1
Published: over 8 years ago
10.3390/ijms20081974
Transcriptome Sequencing Reveals Potential Mechanisms of the Maternal Effect on Egg Diapause Induction of Locusta migratoria
Cited by: 20
Author(s): Kun Hao, Aftab Raza Jarwar, Hidayat Ullah, Xiongbing Tu, Xiangqun Nong, Zehua Zhang
Software Mentions: 1
Published: over 5 years ago
10.1038/srep27233
Heritability and Reversibility of DNA Methylation Induced by in vitro Grafting between Brassica juncea and B. oleracea
Cited by: 25
Author(s): Liwen Cao, Ningning Yu, Junxing Li, Zhenyu Qi, Dan Wang, Liping Chen
Software Mentions: 1
Published: over 8 years ago
10.3390/ijms20112694
Transcriptional Regulatory Network of GA Floral Induction Pathway in LA Hybrid Lily
Cited by: 11
Author(s): Wenqi Li, Yubing Yong, Yue Zhang, Yingmin Lyu
Software Mentions: 1
Published: over 5 years ago
10.1186/1471-2164-14-241
Comparative transcriptome analysis of Gossypium hirsutumL. in response to sap sucking insects: aphid and whitefly
Cited by: 66
Author(s): Neeraj Dubey, Ridhi Goel, Alok Ranjan, A. B. Idris, Sunil Kumar Singh, Sumit K. Bag, K. Chandrashekar, Kapil Deo Pandey, Pradhyumna Kumar Singh, Samir V. Sawant
Software Mentions: 1
Published: over 11 years ago
10.1038/srep27752
Transcriptome profiling of the salt-stress response in Triticum aestivum cv. Kharchia Local
Cited by: 78
Author(s): Etika Goyal, Singh K. Amit, Ravi S. Singh, Ajay Kumar Mahato, Suresh Chand, Kanika Kumar
Software Mentions: 1
Published: over 8 years ago
10.1038/srep30203
Genome-wide analyses of the bZIP family reveal their involvement in the development, ripening and abiotic stress response in banana
Cited by: 55
Author(s): Wei Hu, Lianzhe Wang, Weiwei Tie, Yan Yan, Zehong Ding, Juhua Liu, Meiying Li, Ming Peng, Biao Xu, Zhiqiang Jin
Software Mentions: 1
Published: over 8 years ago
10.1038/srep30281
Expression profiling and functional characterization of miR-192 throughout sheep skeletal muscle development
Cited by: 30
Author(s): Qian Zhao, Yun Ju Kang, Hongyang Wang, Weijun Guan, Xiangchen Li, Lin Jiang, Xiaohong He, Pu Yun, Jianlin Han, Yuehui Ma, Qianjun Zhao
Software Mentions: 1
Published: over 8 years ago
10.1038/srep31845
Developmental transcriptome analysis and identification of genes involved in formation of intestinal air-breathing function of Dojo loach, Misgurnus anguillicaudatus
Cited by: 17
Author(s): Weiwei Luo, Xiaojuan Cao, Xiaofei Xu, Songqian Huang, Chuanshu Liu, Tea Tomljanović
Software Mentions: 1
Published: over 8 years ago
10.1038/srep35224
Identification of candidate genes associated with porcine meat color traits by genome-wide transcriptome analysis
Cited by: 33
Author(s): Bojiang Li, Chao Dong, Pinghua Li, Zhuqing Ren, Han Wang, Fengxiang Yu, Ning Chen, Kaiqing Liu, Wei Wei, Ruihua Huang, Jie Chen, Wangjun Wu, Honglin Liu
Software Mentions: 1
Published: about 8 years ago
10.3390/ijms20122966
Determination of the MiRNAs Related to Bean Pyralid Larvae Resistance in Soybean Using Small RNA and Transcriptome Sequencing
Cited by: 11
Author(s): Weiying Zeng, Zheng Sun, Zhenguang Lai, Shou-Zhen Yang, Huaizhu Chen, Yang Xiao-ling, Jiangrong Tao, Xiangmin Tang
Software Mentions: 1
Published: over 5 years ago
10.1002/mbo3.720
Efficacy of levofloxacin against biofilms of<i>Pseudomonas aeruginosa</i>isolated from patients with respiratory tract infections in vitro
Cited by: 13
Author(s): Pengfei She, Zhen Luo, Lihua Chen, Yong Wu
Software Mentions: 1
Published: about 6 years ago
10.1002/mbo3.1019
<i>Pantoea</i> sp. P37 as a novel nonpathogenic host for the heterologous production of rhamnolipids
Cited by: 6
Author(s): Margarete Nawrath, Christoph Ottenheim, Jin Wu, Wolfgang Zimmermann
Software Mentions: 1
Published: over 4 years ago
10.1186/s40168-020-00886-x
Microbiota from alginate oligosaccharide-dosed mice successfully mitigated small intestinal mucositis
Cited by: 54
Author(s): Pengfei Zhang, Jing Liu, Bohui Xiong, Cong Zhao, Beining Kang, Yishan Gao, Zengkuan Li, Wei Ge, Shun‐Feng Cheng, Yanan Hao, Wei Shen, Shuai Yu, Liang Chen, Xiangfang Tang, Yong Zhao, Hongfu Zhang
Software Mentions: 1
Published: over 4 years ago
10.1186/s12934-019-1188-8
Enhanced acid-stress tolerance in Lactococcus lactis NZ9000 by overexpression of ABC transporters
Cited by: 33
Author(s): Zhengming Zhu, Jinhua Yang, Pei-Shan Yang, Zhimeng Wu, Juan Zhang, Guocheng Du
Software Mentions: 1
Published: over 5 years ago
10.3390/microorganisms8081136
Transcriptome Analysis of Testes and Uterus: Reproductive Dysfunction Induced by Toxoplasma gondii in Mice
Cited by: 2
Author(s): Junjie Wang, Tanghui Liu, Yasser S. Mahmmod, Zipeng Yang, Jiexing Tan, Zhaowen Ren, Xirui Zhang, Xiaoying Yang, Xiu‐Xiang Zhang, Zihao Yuan
Software Mentions: 1
Published: over 4 years ago
10.1186/s12934-015-0264-y
A preliminary study of the mechanism of nitrate-stimulated remarkable increase of rifamycin production in Amycolatopsis mediterranei U32 by RNA-seq
Cited by: 17
Author(s): Zhi Hui Shao, Shuang Ren, Xin Qiang Liu, Jian Xu, Yu Han, Guo Ping Zhao, Jing‐Zhi Wang
Software Mentions: 1
Published: over 9 years ago
10.1186/s12943-014-0285-x
Genome-wide analyses identify KLF4 as an important negative regulator in T-cell acute lymphoblastic leukemia through directly inhibiting T-cell associated genes
Cited by: 25
Author(s): Li Wei, Zhiwu Jiang, Tianzhong Li, Xinru Wei, Yi Zheng, Donghai Wu, Lijian Yang, Shaohua Chen, Bing Xu, Ming Zhong, Jue Jiang, Yufeng Hu, Hexiu Su, Minjie Zhang, Xiao‐Jun Huang, Suxia Geng, Jianyu Weng, Xin Du, Pentao Liu, Yangqiu Li, Hudan Liu, Yao Yao, Peng Li
Software Mentions: 1
Published: almost 10 years ago
10.1186/s12943-020-01206-5
RETRACTED ARTICLE: LncRNA BCRT1 promotes breast cancer progression by targeting miR-1303/PTBP3 axis
Cited by: 272
Author(s): Yiran Liang, Xinwei Song, Yaming Li, Bing Chen, Wenjing Zhao, Limin Wang, Hanwen Zhang, Ying Liu, Dianwen Han, Ning Zhang, Tingting Ma, Yajie Wang, Fangzhou Ye, Dan Luo, Xiaoyan Li
Software Mentions: 1
Published: over 4 years ago
10.1038/srep37416
Correlation analysis of the mRNA and miRNA expression profiles in the nascent synthetic allotetraploid Raphanobrassica
Cited by: 15
Author(s): Bingyuan Ye, Ruihua Wang, Jianbo Wang
Software Mentions: 1
Published: almost 8 years ago
10.1186/s12943-021-01321-x
CircNR3C2 promotes HRD1-mediated tumor-suppressive effect via sponging miR-513a-3p in triple-negative breast cancer
Cited by: 44
Author(s): Ya Fan, Jia Wang, Jing Wen, Yifei Sun, Yang Xu, Yipin Wang, Xiubin Liang, Dongming Su
Software Mentions: 1
Published: almost 4 years ago
10.1111/mec.12344
Mass flowering of the tropical tree <i><scp>S</scp>horea beccariana</i> was preceded by expression changes in flowering and drought‐responsive genes
Cited by: 65
Author(s): Masaki J. Kobayashi, Yayoi Takeuchi, Tanaka Kenta, Tomonori Kume, Bibian Diway, Kentaro Shimizu
Software Mentions: 1
Published: over 11 years ago
10.3390/molecules23051202
Identification and Expression of miRNAs Related to Female Flower Induction in Walnut (Juglans regia L.)
Cited by: 15
Author(s): Li Zhou, Shaowen Quan, Hang Xu, Lan Ma, Jianxin Niu
Software Mentions: 1
Published: over 6 years ago
10.1038/srep43007
Comparative physiological and transcriptomic analyses provide integrated insight into osmotic, cold, and salt stress tolerance mechanisms in banana
Cited by: 31
Author(s): Wei Hu, Zehong Ding, Weiwei Tie, Yan Yan, Yang Liu, Chunlai Wu, Juhua Liu, Jiashui Wang, Ming Peng, Biao Xu, Zhiqiang Jin
Software Mentions: 1
Published: over 7 years ago
10.3390/molecules22081318
Transcriptional Responses of Creeping Bentgrass to 2,3-Butanediol, a Bacterial Volatile Compound (BVC) Analogue
Cited by: 19
Author(s): Yi Shi, Kuiju Niu, Bingru Huang, Wenhui Liu, Haiching Ma
Software Mentions: 1
Published: over 7 years ago
10.3390/molecules21050560
De Novo Sequencing and Transcriptome Analysis of Pleurotus eryngii subsp. tuoliensis (Bailinggu) Mycelia in Response to Cold Stimulation
Cited by: 32
Author(s): Yongping Fu, Liang Yuan, Yueting Dai, Chentao Yang, Mingzheng Duan, Zhuo Zhang, Songnian Hu, Zhiwu Zhang, Li Yu
Software Mentions: 1
Published: over 8 years ago
10.1186/s12934-021-01570-x
Study on the mechanism of production of γ-PGA and nattokinase in Bacillus subtilis natto based on RNA-seq analysis
Cited by: 16
Author(s): Min Li, Zilong Zhang, Shenwei Li, Zhen Tian, Xinbin Ma
Software Mentions: 1
Published: over 3 years ago
10.1038/srep43215
Comparative transcriptomic analysis reveals the roles of overlapping heat-/drought-responsive genes in poplars exposed to high temperature and drought
Cited by: 66
Author(s): Jingbo Jia, Jing Zhou, Wenqiang Shi, Xu Cao, Jie Luo, Andrea Polle, Zhibin Luo
Software Mentions: 1
Published: over 7 years ago
10.1007/s00438-017-1409-y
Integrated analysis of transcriptomic and metabolomic data reveals critical metabolic pathways involved in rotenoid biosynthesis in the medicinal plant Mirabilis himalaica
Cited by: 20
Author(s): Li Gu, Zhongyi Zhang, Quan Hong, Mingjie Li, Fangyu Zhao, Yan Xu, Jiang Liu, Man Sai, Weilie Zheng, Xiaozhong Lan
Software Mentions: 1
Published: almost 7 years ago
10.1186/s12934-015-0196-6
Saccharomyces cerevisiae transcriptional reprograming due to bacterial contamination during industrial scale bioethanol production
Cited by: 51
Author(s): Osmar V Carvalho-Netto, Marcelo Falsarella Carazzolle, Luciana Souto Mofatto, Paulo José Pereira Lima Teixeira, Melline Fontes Noronha, Luige Armando Llerena Calderón, Piotr A. Mieczkowski, Juan Lucas Argueso, Gonçalo Amarante Guimarães Pereira
Software Mentions: 1
Published: almost 10 years ago
10.1111/mpp.12988
Convergent and distinctive functions of transcription factors VdYap1, VdAtf1, and VdSkn7 in the regulation of nitrosative stress resistance, microsclerotia formation, and virulence in <i>Verticillium dahliae</i>
Cited by: 13
Author(s): Chen Tang, Xianjiang Jin, Steven J. Klosterman, Yonglin Wang
Software Mentions: 1
Published: about 4 years ago
10.1097/MD.0000000000012604
Expression profiles of long noncoding RNAs and mRNAs in peripheral blood mononuclear cells of patients with acute myocardial infarction
Cited by: 12
Author(s): Pingsen Zhao, Heming Wu, Zhixiong Zhong, Zuo‐Feng Zhang, Wei Zhong, Bin Li, Cunren Li, Zhidong Liu, Min Yang
Software Mentions: 1
Published: about 6 years ago
10.1186/s13567-018-0613-z
Global discovery of small RNAs in the fish pathogen Edwardsiella piscicida: key regulator of adversity and pathogenicity
Cited by: 9
Author(s): Hehe Du, Haizhen Zhou, Peng Tang, Huiqin Huang, Min Liu, Yonghua Hu
Software Mentions: 1
Published: almost 6 years ago
10.3390/ijms20143465
Changes in Gene Expression and Metabolite Profiles in Platanus acerifolia Leaves in Response to Feeding Damage Caused by Corythucha ciliata
Cited by: 3
Author(s): Fengqi Li, Chunlei Wu, Youssef Dewer, Lijun Du, Cheng Qu, Chen Luo
Software Mentions: 1
Published: over 5 years ago
10.1186/s12985-018-0926-6
Transcriptome profiling of whitefly guts in response to Tomato yellow leaf curl virus infection
Cited by: 23
Author(s): Liang Geng, Li‐Xin Qian, Ruo-Xuan Shao, Yin-Quan Liu, Shu‐Sheng Liu, Xiaowei Wang
Software Mentions: 1
Published: almost 7 years ago
10.1038/srep44733
De novo sequencing and comparative analysis of leaf transcriptomes of diverse condensed tannin-containing lines of underutilized Psophocarpus tetragonolobus (L.) DC
Cited by: 21
Author(s): Vinayak Singh, Ridhi Goel, Veena Pande, Mehar Hasan Asif, Chandra Sekhar Mohanty
Software Mentions: 1
Published: over 7 years ago
10.1080/21505594.2017.1355660
<i>Paracoccidioides brasiliensis</i>presents metabolic reprogramming and secretes a serine proteinase during murine infection
Cited by: 28
Author(s): Laurine Lacerda Pigosso, Lílian Cristiane Baeza, Mariana Vieira Tomazett, Mariana Batista Rodrigues Faleiro, Veridiana Maria Brianezi Dignani de Moura, Alexandre Melo Bailão, Clayton Luiz Borges, Juliana Alves Parente Rocha, Gabriel R. Fernandes, Gregory M. Gauthier, Célia Maria de Almeida Soares
Software Mentions: 1
Published: over 7 years ago
10.1186/s12896-016-0325-2
Transcriptomic response of wolf spider, Pardosa pseudoannulata, to transgenic rice expressing Bacillus thuringiensis Cry1Ab protein
Cited by: 9
Author(s): Juan Wang, Yu Peng, Kaifu Xiao, Baoyang Wei, Jianwen Hu, Zhi Wang, Qisheng Song, Xuguo Zhou
Software Mentions: 1
Published: almost 8 years ago
10.1111/pim.12842
Transcriptional profiling of Microtus fortis responses to S. japonicum : New sight into Mf‐Hsp90 α resistance mechanism
Cited by: 1
Author(s): Dan Xiong, Sanchuan Luo, Kunlu Wu, Yuanjing Yu, Jun Sun, Yanpeng Wang, Jingping Hu, Weixin Hu
Software Mentions: 1
Published: over 3 years ago
10.3390/md12115698
Comparative Transcriptome Analysis of a Toxin-Producing Dinoflagellate Alexandrium catenella and Its Non-Toxic Mutant
Cited by: 59
Author(s): Yong Zhang, Shu Fei Zhang, Lin Lin, Da Zhi Wang
Software Mentions: 1
Published: almost 10 years ago
10.3390/pathogens10070823
Analysis of In Vivo Transcriptome of Intracellular Bacterial Pathogen Salmonella enterica serovar Typhmurium Isolated from Mouse Spleen
Cited by: 0
Author(s): Na Sun, Yanying Song, Cong Li, Mengda Liu, Liang Yu, Fangkun Wang
Software Mentions: 1
Published: over 3 years ago
10.7717/peerj.6538
Comparative analysis of the liver transcriptome in the red-eared slider <i>Trachemys scripta elegans</i> under chronic salinity stress
Cited by: 5
Author(s): Mingsheng Hong, Jiang AiPing, Na Li, Weihao Li, Haitao Shi, Kenneth B. Storey, Li Ding
Software Mentions: 1
Published: over 5 years ago
10.7717/peerj.8470
Transcriptome analysis and transcription factors responsive to drought stress in <i>Hibiscus cannabinus</i>
Cited by: 9
Author(s): Xiaopeng An, Guanrong Jin, Xiangdong Luo, Changli Chen, Wenlue Li, Guanlin Zhu
Software Mentions: 1
Published: over 4 years ago
10.3390/ijms20184399
Social Learning of Acquiring Novel Feeding Habit in Mandarin Fish (Siniperca chuatsi)
Cited by: 6
Author(s): Jian Peng, Yaqi Dou, Hui Liang, Shan He, Xu‐Fang Liang, Linlin Shi
Software Mentions: 1
Published: about 5 years ago
10.1186/s12944-020-01219-5
Screening and identification of MicroRNAs expressed in perirenal adipose tissue during rabbit growth
Cited by: 5
Author(s): Guoze Wang, Guo Guo, Xueting Tian, Shiyan Hu, Kun Du, Qinghai Zhang, Jingxin Mao, Xianbo Jia, Shiyi Chen, Jie Wang, Songjia Lai
Software Mentions: 1
Published: over 4 years ago